Multiple sequence alignment - TraesCS6A01G338100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G338100 chr6A 100.000 2810 0 0 1 2810 571798493 571801302 0.000000e+00 5190.0
1 TraesCS6A01G338100 chr1B 88.698 2097 211 21 729 2810 238676585 238678670 0.000000e+00 2536.0
2 TraesCS6A01G338100 chr1B 83.790 2079 306 22 750 2810 676800097 676802162 0.000000e+00 1943.0
3 TraesCS6A01G338100 chr2D 88.576 2092 213 24 732 2810 88394708 88392630 0.000000e+00 2516.0
4 TraesCS6A01G338100 chr2D 88.193 2092 223 22 731 2810 36034485 36036564 0.000000e+00 2473.0
5 TraesCS6A01G338100 chr2D 85.976 164 19 3 249 411 571078959 571079119 3.720000e-39 172.0
6 TraesCS6A01G338100 chr1D 87.948 2091 217 25 732 2810 321634867 321636934 0.000000e+00 2433.0
7 TraesCS6A01G338100 chr1D 88.595 1666 180 9 1150 2810 399182222 399183882 0.000000e+00 2015.0
8 TraesCS6A01G338100 chr1D 87.349 166 12 7 249 411 462301357 462301516 6.180000e-42 182.0
9 TraesCS6A01G338100 chr5B 88.963 1957 195 17 866 2810 227830837 227828890 0.000000e+00 2398.0
10 TraesCS6A01G338100 chr5B 84.670 2094 278 27 734 2810 520077397 520079464 0.000000e+00 2049.0
11 TraesCS6A01G338100 chr5B 79.310 87 16 2 449 534 43454713 43454628 3.020000e-05 60.2
12 TraesCS6A01G338100 chr3B 88.555 1695 189 5 1119 2810 44523187 44524879 0.000000e+00 2050.0
13 TraesCS6A01G338100 chr3B 84.091 88 11 3 448 534 260316911 260316826 6.450000e-12 82.4
14 TraesCS6A01G338100 chr3A 84.010 2095 307 25 730 2810 737126659 737128739 0.000000e+00 1988.0
15 TraesCS6A01G338100 chr3A 87.195 164 15 5 249 411 21364460 21364618 6.180000e-42 182.0
16 TraesCS6A01G338100 chr5A 96.462 961 33 1 1851 2810 631754296 631753336 0.000000e+00 1585.0
17 TraesCS6A01G338100 chr5A 85.207 169 18 6 245 411 136396941 136396778 1.730000e-37 167.0
18 TraesCS6A01G338100 chr7D 88.948 941 93 10 732 1667 615963559 615964493 0.000000e+00 1151.0
19 TraesCS6A01G338100 chr7D 92.228 772 59 1 2039 2810 615964520 615965290 0.000000e+00 1092.0
20 TraesCS6A01G338100 chr6D 90.092 434 29 8 1 429 427091503 427091927 4.090000e-153 551.0
21 TraesCS6A01G338100 chr6D 91.477 176 8 3 464 639 427091992 427092160 4.680000e-58 235.0
22 TraesCS6A01G338100 chr6B 90.341 176 10 3 464 639 642919330 642919498 1.010000e-54 224.0
23 TraesCS6A01G338100 chr6B 95.238 42 2 0 678 719 642919519 642919560 1.810000e-07 67.6
24 TraesCS6A01G338100 chr4D 86.905 168 17 4 249 414 64390472 64390636 1.720000e-42 183.0
25 TraesCS6A01G338100 chr4D 92.500 40 3 0 445 484 329302458 329302497 1.090000e-04 58.4
26 TraesCS6A01G338100 chr5D 84.916 179 20 6 249 424 241946445 241946271 1.030000e-39 174.0
27 TraesCS6A01G338100 chr2B 85.714 168 19 4 246 411 752669220 752669384 3.720000e-39 172.0
28 TraesCS6A01G338100 chr1A 85.976 164 15 6 252 411 530165956 530165797 4.810000e-38 169.0
29 TraesCS6A01G338100 chr3D 84.524 84 11 2 448 530 182029655 182029573 6.450000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G338100 chr6A 571798493 571801302 2809 False 5190.0 5190 100.0000 1 2810 1 chr6A.!!$F1 2809
1 TraesCS6A01G338100 chr1B 238676585 238678670 2085 False 2536.0 2536 88.6980 729 2810 1 chr1B.!!$F1 2081
2 TraesCS6A01G338100 chr1B 676800097 676802162 2065 False 1943.0 1943 83.7900 750 2810 1 chr1B.!!$F2 2060
3 TraesCS6A01G338100 chr2D 88392630 88394708 2078 True 2516.0 2516 88.5760 732 2810 1 chr2D.!!$R1 2078
4 TraesCS6A01G338100 chr2D 36034485 36036564 2079 False 2473.0 2473 88.1930 731 2810 1 chr2D.!!$F1 2079
5 TraesCS6A01G338100 chr1D 321634867 321636934 2067 False 2433.0 2433 87.9480 732 2810 1 chr1D.!!$F1 2078
6 TraesCS6A01G338100 chr1D 399182222 399183882 1660 False 2015.0 2015 88.5950 1150 2810 1 chr1D.!!$F2 1660
7 TraesCS6A01G338100 chr5B 227828890 227830837 1947 True 2398.0 2398 88.9630 866 2810 1 chr5B.!!$R2 1944
8 TraesCS6A01G338100 chr5B 520077397 520079464 2067 False 2049.0 2049 84.6700 734 2810 1 chr5B.!!$F1 2076
9 TraesCS6A01G338100 chr3B 44523187 44524879 1692 False 2050.0 2050 88.5550 1119 2810 1 chr3B.!!$F1 1691
10 TraesCS6A01G338100 chr3A 737126659 737128739 2080 False 1988.0 1988 84.0100 730 2810 1 chr3A.!!$F2 2080
11 TraesCS6A01G338100 chr5A 631753336 631754296 960 True 1585.0 1585 96.4620 1851 2810 1 chr5A.!!$R2 959
12 TraesCS6A01G338100 chr7D 615963559 615965290 1731 False 1121.5 1151 90.5880 732 2810 2 chr7D.!!$F1 2078
13 TraesCS6A01G338100 chr6D 427091503 427092160 657 False 393.0 551 90.7845 1 639 2 chr6D.!!$F1 638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
465 471 0.034089 GTTTGGGAGCACCTATGGCT 60.034 55.0 0.0 0.0 46.07 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1830 1862 0.25316 ATCACTGGCCACCCCTCTAA 60.253 55.0 0.0 0.0 0.0 2.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 6.514541 GCATGCTATATGCTGTGAAACTTGAT 60.515 38.462 11.37 0.00 43.37 2.57
55 56 6.769341 TGCTATATGCTGTGAAACTTGATCAT 59.231 34.615 0.00 0.00 43.37 2.45
58 59 9.486497 CTATATGCTGTGAAACTTGATCATACT 57.514 33.333 0.00 0.00 38.04 2.12
107 110 4.126437 TGTCGATCGATTATGTTTGGCAT 58.874 39.130 22.50 0.00 41.42 4.40
116 119 5.748152 CGATTATGTTTGGCATTTTGGGTAG 59.252 40.000 0.00 0.00 38.94 3.18
260 265 4.338012 CTGTTTTATAACCCCCTCCGTTT 58.662 43.478 0.00 0.00 33.15 3.60
325 331 9.471084 CATATGGATGTACATGAACGTAGTTTA 57.529 33.333 14.43 0.00 40.84 2.01
326 332 9.692749 ATATGGATGTACATGAACGTAGTTTAG 57.307 33.333 14.43 0.00 39.95 1.85
356 362 5.975344 AGATTCATTCATTTTGCTGCGTATG 59.025 36.000 0.00 0.00 0.00 2.39
373 379 9.530129 GCTGCGTATGTAGTTCATATTAAAATC 57.470 33.333 1.82 0.00 40.54 2.17
405 411 8.943909 AGAAGACTTATATTTACAAACGGAGG 57.056 34.615 0.00 0.00 0.00 4.30
406 412 8.755977 AGAAGACTTATATTTACAAACGGAGGA 58.244 33.333 0.00 0.00 0.00 3.71
407 413 9.374838 GAAGACTTATATTTACAAACGGAGGAA 57.625 33.333 0.00 0.00 0.00 3.36
408 414 8.943909 AGACTTATATTTACAAACGGAGGAAG 57.056 34.615 0.00 0.00 0.00 3.46
409 415 8.537858 AGACTTATATTTACAAACGGAGGAAGT 58.462 33.333 0.00 0.00 0.00 3.01
410 416 9.807649 GACTTATATTTACAAACGGAGGAAGTA 57.192 33.333 0.00 0.00 0.00 2.24
415 421 6.998968 TTTACAAACGGAGGAAGTAAAACA 57.001 33.333 0.00 0.00 33.29 2.83
416 422 6.607735 TTACAAACGGAGGAAGTAAAACAG 57.392 37.500 0.00 0.00 0.00 3.16
417 423 4.520179 ACAAACGGAGGAAGTAAAACAGT 58.480 39.130 0.00 0.00 0.00 3.55
418 424 5.673514 ACAAACGGAGGAAGTAAAACAGTA 58.326 37.500 0.00 0.00 0.00 2.74
419 425 6.293698 ACAAACGGAGGAAGTAAAACAGTAT 58.706 36.000 0.00 0.00 0.00 2.12
420 426 6.426025 ACAAACGGAGGAAGTAAAACAGTATC 59.574 38.462 0.00 0.00 0.00 2.24
421 427 5.082251 ACGGAGGAAGTAAAACAGTATCC 57.918 43.478 0.00 0.00 0.00 2.59
422 428 4.776308 ACGGAGGAAGTAAAACAGTATCCT 59.224 41.667 0.00 0.00 39.91 3.24
427 433 7.800300 AGGAAGTAAAACAGTATCCTCTTCT 57.200 36.000 0.00 0.00 31.83 2.85
428 434 8.208575 AGGAAGTAAAACAGTATCCTCTTCTT 57.791 34.615 0.00 0.00 31.83 2.52
429 435 8.315482 AGGAAGTAAAACAGTATCCTCTTCTTC 58.685 37.037 0.00 0.00 31.83 2.87
430 436 8.095169 GGAAGTAAAACAGTATCCTCTTCTTCA 58.905 37.037 0.00 0.00 33.14 3.02
431 437 9.660180 GAAGTAAAACAGTATCCTCTTCTTCAT 57.340 33.333 0.00 0.00 0.00 2.57
435 441 8.924511 AAAACAGTATCCTCTTCTTCATTTCA 57.075 30.769 0.00 0.00 0.00 2.69
436 442 9.525826 AAAACAGTATCCTCTTCTTCATTTCAT 57.474 29.630 0.00 0.00 0.00 2.57
438 444 9.829507 AACAGTATCCTCTTCTTCATTTCATAG 57.170 33.333 0.00 0.00 0.00 2.23
439 445 7.930865 ACAGTATCCTCTTCTTCATTTCATAGC 59.069 37.037 0.00 0.00 0.00 2.97
440 446 8.149647 CAGTATCCTCTTCTTCATTTCATAGCT 58.850 37.037 0.00 0.00 0.00 3.32
441 447 9.373450 AGTATCCTCTTCTTCATTTCATAGCTA 57.627 33.333 0.00 0.00 0.00 3.32
444 450 8.489676 TCCTCTTCTTCATTTCATAGCTATCT 57.510 34.615 2.34 0.00 0.00 1.98
445 451 8.932610 TCCTCTTCTTCATTTCATAGCTATCTT 58.067 33.333 2.34 0.00 0.00 2.40
446 452 8.991026 CCTCTTCTTCATTTCATAGCTATCTTG 58.009 37.037 2.34 0.00 0.00 3.02
447 453 9.545105 CTCTTCTTCATTTCATAGCTATCTTGT 57.455 33.333 2.34 0.00 0.00 3.16
448 454 9.896645 TCTTCTTCATTTCATAGCTATCTTGTT 57.103 29.630 2.34 0.00 0.00 2.83
451 457 8.896744 TCTTCATTTCATAGCTATCTTGTTTGG 58.103 33.333 2.34 0.00 0.00 3.28
452 458 7.572523 TCATTTCATAGCTATCTTGTTTGGG 57.427 36.000 2.34 0.00 0.00 4.12
453 459 7.345691 TCATTTCATAGCTATCTTGTTTGGGA 58.654 34.615 2.34 0.00 0.00 4.37
454 460 7.500227 TCATTTCATAGCTATCTTGTTTGGGAG 59.500 37.037 2.34 0.00 0.00 4.30
455 461 4.708177 TCATAGCTATCTTGTTTGGGAGC 58.292 43.478 2.34 0.00 0.00 4.70
456 462 4.164030 TCATAGCTATCTTGTTTGGGAGCA 59.836 41.667 2.34 0.00 32.28 4.26
457 463 2.716217 AGCTATCTTGTTTGGGAGCAC 58.284 47.619 0.00 0.00 32.28 4.40
458 464 1.745653 GCTATCTTGTTTGGGAGCACC 59.254 52.381 0.00 0.00 40.81 5.01
459 465 2.619074 GCTATCTTGTTTGGGAGCACCT 60.619 50.000 0.00 0.00 41.11 4.00
460 466 3.370527 GCTATCTTGTTTGGGAGCACCTA 60.371 47.826 0.00 0.00 41.11 3.08
461 467 4.687219 GCTATCTTGTTTGGGAGCACCTAT 60.687 45.833 0.00 0.00 41.11 2.57
462 468 3.071874 TCTTGTTTGGGAGCACCTATG 57.928 47.619 0.00 0.00 41.11 2.23
463 469 2.094675 CTTGTTTGGGAGCACCTATGG 58.905 52.381 0.00 0.00 41.11 2.74
464 470 0.323360 TGTTTGGGAGCACCTATGGC 60.323 55.000 0.00 0.00 41.11 4.40
465 471 0.034089 GTTTGGGAGCACCTATGGCT 60.034 55.000 0.00 0.00 46.07 4.75
489 495 6.029346 CAGGTGCCTGAATATTTTCTTTGT 57.971 37.500 12.66 0.00 46.30 2.83
490 496 6.458210 CAGGTGCCTGAATATTTTCTTTGTT 58.542 36.000 12.66 0.00 46.30 2.83
491 497 6.930722 CAGGTGCCTGAATATTTTCTTTGTTT 59.069 34.615 12.66 0.00 46.30 2.83
492 498 7.116805 CAGGTGCCTGAATATTTTCTTTGTTTC 59.883 37.037 12.66 0.00 46.30 2.78
493 499 6.928492 GGTGCCTGAATATTTTCTTTGTTTCA 59.072 34.615 0.00 0.00 32.78 2.69
494 500 7.116805 GGTGCCTGAATATTTTCTTTGTTTCAG 59.883 37.037 0.00 0.00 39.66 3.02
495 501 7.653311 GTGCCTGAATATTTTCTTTGTTTCAGT 59.347 33.333 8.99 0.00 38.78 3.41
496 502 7.867403 TGCCTGAATATTTTCTTTGTTTCAGTC 59.133 33.333 8.99 0.00 38.78 3.51
497 503 8.084684 GCCTGAATATTTTCTTTGTTTCAGTCT 58.915 33.333 8.99 0.00 38.78 3.24
505 511 9.750125 ATTTTCTTTGTTTCAGTCTATTGTTCC 57.250 29.630 0.00 0.00 0.00 3.62
506 512 6.877611 TCTTTGTTTCAGTCTATTGTTCCC 57.122 37.500 0.00 0.00 0.00 3.97
507 513 6.601332 TCTTTGTTTCAGTCTATTGTTCCCT 58.399 36.000 0.00 0.00 0.00 4.20
508 514 6.486657 TCTTTGTTTCAGTCTATTGTTCCCTG 59.513 38.462 0.00 0.00 0.00 4.45
509 515 5.560722 TGTTTCAGTCTATTGTTCCCTGA 57.439 39.130 0.00 0.00 0.00 3.86
510 516 5.935945 TGTTTCAGTCTATTGTTCCCTGAA 58.064 37.500 0.00 0.00 39.62 3.02
511 517 6.361433 TGTTTCAGTCTATTGTTCCCTGAAA 58.639 36.000 8.57 8.57 45.08 2.69
512 518 6.877611 TTTCAGTCTATTGTTCCCTGAAAC 57.122 37.500 8.57 0.00 43.45 2.78
513 519 4.566004 TCAGTCTATTGTTCCCTGAAACG 58.434 43.478 0.00 0.00 31.58 3.60
514 520 4.039973 TCAGTCTATTGTTCCCTGAAACGT 59.960 41.667 0.00 0.00 31.58 3.99
515 521 4.755123 CAGTCTATTGTTCCCTGAAACGTT 59.245 41.667 0.00 0.00 31.58 3.99
516 522 5.238650 CAGTCTATTGTTCCCTGAAACGTTT 59.761 40.000 14.57 14.57 31.58 3.60
517 523 5.238650 AGTCTATTGTTCCCTGAAACGTTTG 59.761 40.000 20.10 4.71 31.58 2.93
518 524 5.237779 GTCTATTGTTCCCTGAAACGTTTGA 59.762 40.000 20.10 9.52 31.58 2.69
519 525 6.001460 TCTATTGTTCCCTGAAACGTTTGAT 58.999 36.000 20.10 0.00 31.58 2.57
520 526 4.993029 TTGTTCCCTGAAACGTTTGATT 57.007 36.364 20.10 0.00 31.58 2.57
521 527 4.561735 TGTTCCCTGAAACGTTTGATTC 57.438 40.909 20.10 4.32 31.58 2.52
522 528 3.948473 TGTTCCCTGAAACGTTTGATTCA 59.052 39.130 20.10 9.29 35.80 2.57
523 529 4.201970 TGTTCCCTGAAACGTTTGATTCAC 60.202 41.667 20.10 8.37 33.83 3.18
524 530 3.546724 TCCCTGAAACGTTTGATTCACA 58.453 40.909 20.10 7.94 33.83 3.58
525 531 4.141287 TCCCTGAAACGTTTGATTCACAT 58.859 39.130 20.10 0.00 33.83 3.21
526 532 4.215399 TCCCTGAAACGTTTGATTCACATC 59.785 41.667 20.10 0.66 33.83 3.06
527 533 4.475944 CCTGAAACGTTTGATTCACATCC 58.524 43.478 20.10 0.00 33.83 3.51
528 534 4.023279 CCTGAAACGTTTGATTCACATCCA 60.023 41.667 20.10 4.96 33.83 3.41
529 535 5.506686 TGAAACGTTTGATTCACATCCAA 57.493 34.783 20.10 0.00 32.63 3.53
530 536 6.083098 TGAAACGTTTGATTCACATCCAAT 57.917 33.333 20.10 0.00 32.63 3.16
531 537 5.919707 TGAAACGTTTGATTCACATCCAATG 59.080 36.000 20.10 0.00 32.63 2.82
532 538 5.703978 AACGTTTGATTCACATCCAATGA 57.296 34.783 0.00 0.00 29.43 2.57
533 539 5.703978 ACGTTTGATTCACATCCAATGAA 57.296 34.783 0.00 0.00 40.25 2.57
534 540 5.702865 ACGTTTGATTCACATCCAATGAAG 58.297 37.500 0.00 0.00 39.36 3.02
535 541 5.241506 ACGTTTGATTCACATCCAATGAAGT 59.758 36.000 0.00 0.00 39.36 3.01
536 542 6.151691 CGTTTGATTCACATCCAATGAAGTT 58.848 36.000 0.00 0.00 39.36 2.66
537 543 7.040755 ACGTTTGATTCACATCCAATGAAGTTA 60.041 33.333 0.00 0.00 39.36 2.24
538 544 7.807433 CGTTTGATTCACATCCAATGAAGTTAA 59.193 33.333 0.00 0.00 39.36 2.01
539 545 9.643693 GTTTGATTCACATCCAATGAAGTTAAT 57.356 29.630 0.00 0.00 39.36 1.40
541 547 9.642327 TTGATTCACATCCAATGAAGTTAATTG 57.358 29.630 6.01 6.01 39.36 2.32
542 548 8.805175 TGATTCACATCCAATGAAGTTAATTGT 58.195 29.630 11.35 0.00 39.36 2.71
543 549 9.643693 GATTCACATCCAATGAAGTTAATTGTT 57.356 29.630 11.35 0.00 39.36 2.83
544 550 9.643693 ATTCACATCCAATGAAGTTAATTGTTC 57.356 29.630 11.35 0.00 39.36 3.18
545 551 8.408043 TCACATCCAATGAAGTTAATTGTTCT 57.592 30.769 11.35 0.00 33.93 3.01
546 552 8.298854 TCACATCCAATGAAGTTAATTGTTCTG 58.701 33.333 11.35 8.10 33.93 3.02
547 553 8.298854 CACATCCAATGAAGTTAATTGTTCTGA 58.701 33.333 11.35 2.94 33.93 3.27
548 554 9.028284 ACATCCAATGAAGTTAATTGTTCTGAT 57.972 29.630 11.35 4.88 33.93 2.90
549 555 9.865321 CATCCAATGAAGTTAATTGTTCTGATT 57.135 29.630 11.35 0.00 33.93 2.57
563 569 9.574516 AATTGTTCTGATTTAGTAACTTCCAGT 57.425 29.630 0.00 0.00 0.00 4.00
564 570 8.603242 TTGTTCTGATTTAGTAACTTCCAGTC 57.397 34.615 0.00 0.00 0.00 3.51
565 571 7.732025 TGTTCTGATTTAGTAACTTCCAGTCA 58.268 34.615 0.00 0.00 0.00 3.41
566 572 8.208224 TGTTCTGATTTAGTAACTTCCAGTCAA 58.792 33.333 0.00 0.00 0.00 3.18
567 573 9.220767 GTTCTGATTTAGTAACTTCCAGTCAAT 57.779 33.333 0.00 0.00 0.00 2.57
568 574 9.793259 TTCTGATTTAGTAACTTCCAGTCAATT 57.207 29.630 0.00 0.00 0.00 2.32
569 575 9.436957 TCTGATTTAGTAACTTCCAGTCAATTC 57.563 33.333 0.00 0.00 0.00 2.17
570 576 8.561738 TGATTTAGTAACTTCCAGTCAATTCC 57.438 34.615 0.00 0.00 0.00 3.01
571 577 8.160765 TGATTTAGTAACTTCCAGTCAATTCCA 58.839 33.333 0.00 0.00 0.00 3.53
572 578 8.934023 ATTTAGTAACTTCCAGTCAATTCCAA 57.066 30.769 0.00 0.00 0.00 3.53
573 579 8.934023 TTTAGTAACTTCCAGTCAATTCCAAT 57.066 30.769 0.00 0.00 0.00 3.16
575 581 7.923414 AGTAACTTCCAGTCAATTCCAATAC 57.077 36.000 0.00 0.00 0.00 1.89
576 582 7.690256 AGTAACTTCCAGTCAATTCCAATACT 58.310 34.615 0.00 0.00 0.00 2.12
577 583 7.824779 AGTAACTTCCAGTCAATTCCAATACTC 59.175 37.037 0.00 0.00 0.00 2.59
578 584 6.126863 ACTTCCAGTCAATTCCAATACTCA 57.873 37.500 0.00 0.00 0.00 3.41
579 585 6.176183 ACTTCCAGTCAATTCCAATACTCAG 58.824 40.000 0.00 0.00 0.00 3.35
580 586 4.517285 TCCAGTCAATTCCAATACTCAGC 58.483 43.478 0.00 0.00 0.00 4.26
581 587 3.629398 CCAGTCAATTCCAATACTCAGCC 59.371 47.826 0.00 0.00 0.00 4.85
582 588 3.629398 CAGTCAATTCCAATACTCAGCCC 59.371 47.826 0.00 0.00 0.00 5.19
583 589 2.614057 GTCAATTCCAATACTCAGCCCG 59.386 50.000 0.00 0.00 0.00 6.13
584 590 2.503765 TCAATTCCAATACTCAGCCCGA 59.496 45.455 0.00 0.00 0.00 5.14
585 591 3.136443 TCAATTCCAATACTCAGCCCGAT 59.864 43.478 0.00 0.00 0.00 4.18
586 592 2.910688 TTCCAATACTCAGCCCGATC 57.089 50.000 0.00 0.00 0.00 3.69
587 593 1.788229 TCCAATACTCAGCCCGATCA 58.212 50.000 0.00 0.00 0.00 2.92
588 594 2.115427 TCCAATACTCAGCCCGATCAA 58.885 47.619 0.00 0.00 0.00 2.57
589 595 2.158957 TCCAATACTCAGCCCGATCAAC 60.159 50.000 0.00 0.00 0.00 3.18
590 596 2.213499 CAATACTCAGCCCGATCAACC 58.787 52.381 0.00 0.00 0.00 3.77
591 597 1.496060 ATACTCAGCCCGATCAACCA 58.504 50.000 0.00 0.00 0.00 3.67
592 598 1.271856 TACTCAGCCCGATCAACCAA 58.728 50.000 0.00 0.00 0.00 3.67
593 599 0.321653 ACTCAGCCCGATCAACCAAC 60.322 55.000 0.00 0.00 0.00 3.77
594 600 1.361668 CTCAGCCCGATCAACCAACG 61.362 60.000 0.00 0.00 0.00 4.10
595 601 2.746277 AGCCCGATCAACCAACGC 60.746 61.111 0.00 0.00 0.00 4.84
596 602 3.810896 GCCCGATCAACCAACGCC 61.811 66.667 0.00 0.00 0.00 5.68
597 603 3.131478 CCCGATCAACCAACGCCC 61.131 66.667 0.00 0.00 0.00 6.13
598 604 2.359354 CCGATCAACCAACGCCCA 60.359 61.111 0.00 0.00 0.00 5.36
599 605 2.398554 CCGATCAACCAACGCCCAG 61.399 63.158 0.00 0.00 0.00 4.45
600 606 2.877691 GATCAACCAACGCCCAGC 59.122 61.111 0.00 0.00 0.00 4.85
601 607 1.971167 GATCAACCAACGCCCAGCA 60.971 57.895 0.00 0.00 0.00 4.41
602 608 1.926511 GATCAACCAACGCCCAGCAG 61.927 60.000 0.00 0.00 0.00 4.24
603 609 2.410322 ATCAACCAACGCCCAGCAGA 62.410 55.000 0.00 0.00 0.00 4.26
604 610 2.594592 AACCAACGCCCAGCAGAC 60.595 61.111 0.00 0.00 0.00 3.51
605 611 3.414136 AACCAACGCCCAGCAGACA 62.414 57.895 0.00 0.00 0.00 3.41
606 612 3.052082 CCAACGCCCAGCAGACAG 61.052 66.667 0.00 0.00 0.00 3.51
607 613 3.052082 CAACGCCCAGCAGACAGG 61.052 66.667 0.00 0.00 0.00 4.00
608 614 3.241530 AACGCCCAGCAGACAGGA 61.242 61.111 0.00 0.00 0.00 3.86
609 615 2.818169 AACGCCCAGCAGACAGGAA 61.818 57.895 0.00 0.00 0.00 3.36
610 616 2.435586 CGCCCAGCAGACAGGAAG 60.436 66.667 0.00 0.00 0.00 3.46
611 617 2.753029 GCCCAGCAGACAGGAAGT 59.247 61.111 0.00 0.00 0.00 3.01
612 618 1.673665 GCCCAGCAGACAGGAAGTG 60.674 63.158 0.00 0.00 0.00 3.16
613 619 1.673665 CCCAGCAGACAGGAAGTGC 60.674 63.158 0.00 0.00 37.48 4.40
615 621 0.610174 CCAGCAGACAGGAAGTGCTA 59.390 55.000 0.00 0.00 45.82 3.49
616 622 1.674221 CCAGCAGACAGGAAGTGCTAC 60.674 57.143 0.00 0.00 45.82 3.58
617 623 1.274728 CAGCAGACAGGAAGTGCTACT 59.725 52.381 0.00 0.00 45.82 2.57
618 624 2.493675 CAGCAGACAGGAAGTGCTACTA 59.506 50.000 0.00 0.00 45.82 1.82
619 625 3.131933 CAGCAGACAGGAAGTGCTACTAT 59.868 47.826 0.00 0.00 45.82 2.12
620 626 3.383185 AGCAGACAGGAAGTGCTACTATC 59.617 47.826 0.00 0.00 45.72 2.08
621 627 3.793801 GCAGACAGGAAGTGCTACTATCG 60.794 52.174 0.00 0.00 34.23 2.92
622 628 3.628032 CAGACAGGAAGTGCTACTATCGA 59.372 47.826 0.00 0.00 0.00 3.59
623 629 4.096532 CAGACAGGAAGTGCTACTATCGAA 59.903 45.833 0.00 0.00 0.00 3.71
624 630 4.336993 AGACAGGAAGTGCTACTATCGAAG 59.663 45.833 0.00 0.00 0.00 3.79
625 631 3.181485 ACAGGAAGTGCTACTATCGAAGC 60.181 47.826 0.00 0.00 39.25 3.86
626 632 2.362717 AGGAAGTGCTACTATCGAAGCC 59.637 50.000 4.45 0.00 37.97 4.35
627 633 2.546162 GGAAGTGCTACTATCGAAGCCC 60.546 54.545 4.45 0.00 37.97 5.19
628 634 1.776662 AGTGCTACTATCGAAGCCCA 58.223 50.000 4.45 0.00 37.97 5.36
629 635 2.108168 AGTGCTACTATCGAAGCCCAA 58.892 47.619 4.45 0.00 37.97 4.12
630 636 2.159085 AGTGCTACTATCGAAGCCCAAC 60.159 50.000 4.45 0.00 37.97 3.77
631 637 1.138266 TGCTACTATCGAAGCCCAACC 59.862 52.381 4.45 0.00 37.97 3.77
632 638 1.138266 GCTACTATCGAAGCCCAACCA 59.862 52.381 0.00 0.00 32.40 3.67
633 639 2.419574 GCTACTATCGAAGCCCAACCAA 60.420 50.000 0.00 0.00 32.40 3.67
634 640 3.744530 GCTACTATCGAAGCCCAACCAAT 60.745 47.826 0.00 0.00 32.40 3.16
635 641 2.919228 ACTATCGAAGCCCAACCAATC 58.081 47.619 0.00 0.00 0.00 2.67
636 642 2.238646 ACTATCGAAGCCCAACCAATCA 59.761 45.455 0.00 0.00 0.00 2.57
637 643 2.214376 ATCGAAGCCCAACCAATCAA 57.786 45.000 0.00 0.00 0.00 2.57
638 644 1.988293 TCGAAGCCCAACCAATCAAA 58.012 45.000 0.00 0.00 0.00 2.69
639 645 1.885887 TCGAAGCCCAACCAATCAAAG 59.114 47.619 0.00 0.00 0.00 2.77
640 646 1.669795 CGAAGCCCAACCAATCAAAGC 60.670 52.381 0.00 0.00 0.00 3.51
641 647 0.686789 AAGCCCAACCAATCAAAGCC 59.313 50.000 0.00 0.00 0.00 4.35
642 648 1.194121 AGCCCAACCAATCAAAGCCC 61.194 55.000 0.00 0.00 0.00 5.19
643 649 1.479368 GCCCAACCAATCAAAGCCCA 61.479 55.000 0.00 0.00 0.00 5.36
644 650 1.055040 CCCAACCAATCAAAGCCCAA 58.945 50.000 0.00 0.00 0.00 4.12
645 651 1.270785 CCCAACCAATCAAAGCCCAAC 60.271 52.381 0.00 0.00 0.00 3.77
646 652 1.415659 CCAACCAATCAAAGCCCAACA 59.584 47.619 0.00 0.00 0.00 3.33
647 653 2.158842 CCAACCAATCAAAGCCCAACAA 60.159 45.455 0.00 0.00 0.00 2.83
648 654 3.496515 CCAACCAATCAAAGCCCAACAAT 60.497 43.478 0.00 0.00 0.00 2.71
649 655 3.683365 ACCAATCAAAGCCCAACAATC 57.317 42.857 0.00 0.00 0.00 2.67
650 656 2.971330 ACCAATCAAAGCCCAACAATCA 59.029 40.909 0.00 0.00 0.00 2.57
651 657 3.390639 ACCAATCAAAGCCCAACAATCAA 59.609 39.130 0.00 0.00 0.00 2.57
652 658 3.747529 CCAATCAAAGCCCAACAATCAAC 59.252 43.478 0.00 0.00 0.00 3.18
653 659 4.503643 CCAATCAAAGCCCAACAATCAACT 60.504 41.667 0.00 0.00 0.00 3.16
654 660 5.279406 CCAATCAAAGCCCAACAATCAACTA 60.279 40.000 0.00 0.00 0.00 2.24
655 661 4.846779 TCAAAGCCCAACAATCAACTAC 57.153 40.909 0.00 0.00 0.00 2.73
656 662 3.572255 TCAAAGCCCAACAATCAACTACC 59.428 43.478 0.00 0.00 0.00 3.18
657 663 2.215942 AGCCCAACAATCAACTACCC 57.784 50.000 0.00 0.00 0.00 3.69
658 664 1.427368 AGCCCAACAATCAACTACCCA 59.573 47.619 0.00 0.00 0.00 4.51
659 665 1.818674 GCCCAACAATCAACTACCCAG 59.181 52.381 0.00 0.00 0.00 4.45
660 666 2.554344 GCCCAACAATCAACTACCCAGA 60.554 50.000 0.00 0.00 0.00 3.86
661 667 3.347216 CCCAACAATCAACTACCCAGAG 58.653 50.000 0.00 0.00 0.00 3.35
662 668 3.009033 CCCAACAATCAACTACCCAGAGA 59.991 47.826 0.00 0.00 0.00 3.10
663 669 4.256920 CCAACAATCAACTACCCAGAGAG 58.743 47.826 0.00 0.00 0.00 3.20
664 670 4.256920 CAACAATCAACTACCCAGAGAGG 58.743 47.826 0.00 0.00 37.03 3.69
665 671 3.521727 ACAATCAACTACCCAGAGAGGT 58.478 45.455 0.00 0.00 44.37 3.85
666 672 4.684724 ACAATCAACTACCCAGAGAGGTA 58.315 43.478 0.00 0.00 41.58 3.08
667 673 5.091552 ACAATCAACTACCCAGAGAGGTAA 58.908 41.667 0.00 0.00 41.85 2.85
668 674 5.546499 ACAATCAACTACCCAGAGAGGTAAA 59.454 40.000 0.00 0.00 41.85 2.01
669 675 6.043938 ACAATCAACTACCCAGAGAGGTAAAA 59.956 38.462 0.00 0.00 41.85 1.52
670 676 6.697641 ATCAACTACCCAGAGAGGTAAAAA 57.302 37.500 0.00 0.00 41.85 1.94
699 705 9.620660 AAACGATATTTTTCTTTGTACATGACC 57.379 29.630 0.00 0.00 0.00 4.02
700 706 8.330466 ACGATATTTTTCTTTGTACATGACCA 57.670 30.769 0.00 0.00 0.00 4.02
701 707 8.234546 ACGATATTTTTCTTTGTACATGACCAC 58.765 33.333 0.00 0.00 0.00 4.16
702 708 8.233868 CGATATTTTTCTTTGTACATGACCACA 58.766 33.333 0.00 0.00 0.00 4.17
703 709 9.341899 GATATTTTTCTTTGTACATGACCACAC 57.658 33.333 0.00 0.00 0.00 3.82
704 710 6.516739 TTTTTCTTTGTACATGACCACACA 57.483 33.333 0.00 0.00 0.00 3.72
705 711 5.493133 TTTCTTTGTACATGACCACACAC 57.507 39.130 0.00 0.00 0.00 3.82
706 712 4.415881 TCTTTGTACATGACCACACACT 57.584 40.909 0.00 0.00 0.00 3.55
707 713 5.538849 TCTTTGTACATGACCACACACTA 57.461 39.130 0.00 0.00 0.00 2.74
708 714 6.109156 TCTTTGTACATGACCACACACTAT 57.891 37.500 0.00 0.00 0.00 2.12
709 715 7.234661 TCTTTGTACATGACCACACACTATA 57.765 36.000 0.00 0.00 0.00 1.31
710 716 7.094631 TCTTTGTACATGACCACACACTATAC 58.905 38.462 0.00 0.00 0.00 1.47
711 717 5.986501 TGTACATGACCACACACTATACA 57.013 39.130 0.00 0.00 0.00 2.29
712 718 6.538945 TGTACATGACCACACACTATACAT 57.461 37.500 0.00 0.00 0.00 2.29
713 719 7.648039 TGTACATGACCACACACTATACATA 57.352 36.000 0.00 0.00 0.00 2.29
714 720 7.485810 TGTACATGACCACACACTATACATAC 58.514 38.462 0.00 0.00 0.00 2.39
715 721 6.538945 ACATGACCACACACTATACATACA 57.461 37.500 0.00 0.00 0.00 2.29
716 722 6.941857 ACATGACCACACACTATACATACAA 58.058 36.000 0.00 0.00 0.00 2.41
717 723 7.390823 ACATGACCACACACTATACATACAAA 58.609 34.615 0.00 0.00 0.00 2.83
718 724 7.880713 ACATGACCACACACTATACATACAAAA 59.119 33.333 0.00 0.00 0.00 2.44
719 725 7.661127 TGACCACACACTATACATACAAAAC 57.339 36.000 0.00 0.00 0.00 2.43
720 726 6.366604 TGACCACACACTATACATACAAAACG 59.633 38.462 0.00 0.00 0.00 3.60
721 727 5.121142 ACCACACACTATACATACAAAACGC 59.879 40.000 0.00 0.00 0.00 4.84
722 728 5.446741 CCACACACTATACATACAAAACGCC 60.447 44.000 0.00 0.00 0.00 5.68
723 729 4.632688 ACACACTATACATACAAAACGCCC 59.367 41.667 0.00 0.00 0.00 6.13
724 730 4.034742 CACACTATACATACAAAACGCCCC 59.965 45.833 0.00 0.00 0.00 5.80
725 731 3.246699 CACTATACATACAAAACGCCCCG 59.753 47.826 0.00 0.00 0.00 5.73
726 732 2.406596 ATACATACAAAACGCCCCGT 57.593 45.000 0.00 0.00 43.97 5.28
727 733 1.440708 TACATACAAAACGCCCCGTG 58.559 50.000 0.00 0.00 39.99 4.94
728 734 0.535553 ACATACAAAACGCCCCGTGT 60.536 50.000 0.00 0.00 39.99 4.49
774 782 2.522367 TTCTCCCGGGGCGACTTTT 61.522 57.895 23.50 0.00 0.00 2.27
784 792 2.399611 CGACTTTTCGCCGCCATC 59.600 61.111 0.00 0.00 38.71 3.51
789 797 3.599285 TTTTCGCCGCCATCGAGGT 62.599 57.895 0.00 0.00 40.61 3.85
816 830 1.472662 CCCTATCGCCGATCAACCCT 61.473 60.000 1.25 0.00 0.00 4.34
822 836 1.388065 CGCCGATCAACCCTCTCTCT 61.388 60.000 0.00 0.00 0.00 3.10
831 845 2.493973 CCTCTCTCTCGCCTGTGC 59.506 66.667 0.00 0.00 0.00 4.57
883 898 2.680352 GCCTGTGTCGAGGGAGGA 60.680 66.667 7.56 0.00 33.17 3.71
897 913 1.671379 GAGGAAGCGGCGGAAGTTT 60.671 57.895 9.78 0.00 0.00 2.66
904 920 1.918868 GCGGCGGAAGTTTAGGGTTG 61.919 60.000 9.78 0.00 0.00 3.77
927 944 2.958355 CCCACACAACCTGATCTGTTTT 59.042 45.455 0.00 0.00 0.00 2.43
974 992 1.982938 CCGGGGACTCGAGTTCCTT 60.983 63.158 36.21 7.58 43.47 3.36
977 995 0.903454 GGGGACTCGAGTTCCTTGGA 60.903 60.000 36.21 0.00 43.47 3.53
1090 1108 1.457831 GGACCGAGATGGGTAGCCT 60.458 63.158 13.11 0.00 44.64 4.58
1115 1133 3.555586 GCTAGGGTTAACACCACGAAGAA 60.556 47.826 3.66 0.00 46.43 2.52
1139 1157 6.775708 ACTATAGCCAGACTTGGTTTTACAA 58.224 36.000 0.00 0.00 46.80 2.41
1161 1179 1.072678 CATGAGAGCGGCATGGGAT 59.927 57.895 1.45 0.00 39.48 3.85
1269 1287 0.039618 ACGATGGCCCATGGAACTTT 59.960 50.000 15.22 0.00 0.00 2.66
1374 1393 6.949352 ATTCAAATCCATGATGTACCAGAC 57.051 37.500 0.00 0.00 0.00 3.51
1423 1442 2.544486 GCAGCAAAAGTGGGAGAAGTTG 60.544 50.000 0.00 0.00 0.00 3.16
1500 1519 4.641989 GTCAGCATCAATGTCCATAAACCT 59.358 41.667 0.00 0.00 0.00 3.50
1503 1522 6.057533 CAGCATCAATGTCCATAAACCTCTA 58.942 40.000 0.00 0.00 0.00 2.43
1513 1532 5.815740 GTCCATAAACCTCTAAAGAATGCGA 59.184 40.000 0.00 0.00 0.00 5.10
1524 1543 9.814899 CCTCTAAAGAATGCGATATCTATGATT 57.185 33.333 0.34 0.00 0.00 2.57
1645 1664 5.507637 GAAATGCTATCCATCCTCCATCAT 58.492 41.667 0.00 0.00 31.43 2.45
1659 1678 4.520111 CCTCCATCATCACTTGTGTTCAAA 59.480 41.667 0.46 0.00 32.87 2.69
1688 1708 2.528743 CCAGCTGGCTATGCGTTCG 61.529 63.158 22.33 0.00 35.28 3.95
1697 1717 3.993376 TATGCGTTCGGGTCGTGGC 62.993 63.158 0.00 0.00 0.00 5.01
1742 1762 3.217743 GGACGTAGAGGAGGCCGG 61.218 72.222 0.00 0.00 0.00 6.13
1778 1799 3.780173 GCCGCTCAGAGGGAAGCT 61.780 66.667 16.04 0.00 0.00 3.74
1796 1817 1.638133 CTGAGGCGACATGACAGAAG 58.362 55.000 0.00 0.00 0.00 2.85
1831 1863 2.242965 TGCAGATCATGTTGGGGATCTT 59.757 45.455 1.61 0.00 46.01 2.40
1834 1866 4.202398 GCAGATCATGTTGGGGATCTTAGA 60.202 45.833 1.61 0.00 46.01 2.10
1897 1930 1.734137 GAACGCGGGATCAGAGCTA 59.266 57.895 12.47 0.00 0.00 3.32
1916 1949 2.942604 AGGGGCTAGAGGAACTACAA 57.057 50.000 0.00 0.00 41.55 2.41
1954 1990 2.978156 ATGCAGGGGAAGAAGTGAAA 57.022 45.000 0.00 0.00 0.00 2.69
2024 2061 5.531634 GCATAGAGATCTGAAGAGAACCAG 58.468 45.833 0.00 0.00 0.00 4.00
2075 2112 6.313658 GCAAACTCAAAAGTGAAGAATTTGGT 59.686 34.615 0.00 0.00 35.36 3.67
2174 2211 4.554163 CGAGAGGTTCGCGAGTTT 57.446 55.556 9.59 0.00 42.24 2.66
2218 2263 5.523916 CCCTCTTATGTATTGTGGAAACTCG 59.476 44.000 0.00 0.00 0.00 4.18
2461 2536 5.588648 CACACCTTCGATATAAAACATGGGT 59.411 40.000 0.00 0.00 0.00 4.51
2479 2554 7.560368 ACATGGGTTACTTTGAAAAACATCAA 58.440 30.769 0.00 0.00 37.53 2.57
2644 2719 8.262227 AGATGTTGGTTATAATGGTCGTTTCTA 58.738 33.333 0.00 0.00 0.00 2.10
2664 2739 8.746751 GTTTCTAGACATTTGAAAAGAAAGTGC 58.253 33.333 0.00 0.00 34.59 4.40
2669 2750 2.060050 TTGAAAAGAAAGTGCGGGGA 57.940 45.000 0.00 0.00 0.00 4.81
2756 2839 1.751351 CTTGCGGATCTGACTCACCTA 59.249 52.381 5.48 0.00 0.00 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.979155 GCAGGTTCCCTTCCCTTGC 60.979 63.158 0.00 0.00 0.00 4.01
31 32 6.609237 TGATCAAGTTTCACAGCATATAGC 57.391 37.500 0.00 0.00 46.19 2.97
32 33 9.486497 AGTATGATCAAGTTTCACAGCATATAG 57.514 33.333 0.00 0.00 0.00 1.31
33 34 9.264719 CAGTATGATCAAGTTTCACAGCATATA 57.735 33.333 0.00 0.00 39.69 0.86
34 35 7.772292 ACAGTATGATCAAGTTTCACAGCATAT 59.228 33.333 0.00 0.00 39.69 1.78
35 36 7.105588 ACAGTATGATCAAGTTTCACAGCATA 58.894 34.615 0.00 0.00 39.69 3.14
36 37 5.942236 ACAGTATGATCAAGTTTCACAGCAT 59.058 36.000 0.00 0.00 39.69 3.79
39 40 7.425577 TCAACAGTATGATCAAGTTTCACAG 57.574 36.000 0.00 0.00 39.69 3.66
92 95 4.502962 ACCCAAAATGCCAAACATAATCG 58.497 39.130 0.00 0.00 38.34 3.34
107 110 4.237976 TCACAGGAAACACTACCCAAAA 57.762 40.909 0.00 0.00 0.00 2.44
116 119 3.119849 CGGATGGAAATCACAGGAAACAC 60.120 47.826 0.00 0.00 0.00 3.32
154 157 1.408702 TGCACCAAAAGAGCAAGAACC 59.591 47.619 0.00 0.00 39.28 3.62
248 253 6.331577 ACTTATATTTAAAACGGAGGGGGT 57.668 37.500 0.00 0.00 0.00 4.95
249 254 8.929260 AATACTTATATTTAAAACGGAGGGGG 57.071 34.615 0.00 0.00 0.00 5.40
303 309 7.094075 ACTCTAAACTACGTTCATGTACATCCA 60.094 37.037 5.07 0.00 0.00 3.41
314 320 9.570488 AATGAATCTACACTCTAAACTACGTTC 57.430 33.333 0.00 0.00 0.00 3.95
325 331 7.627939 GCAGCAAAATGAATGAATCTACACTCT 60.628 37.037 0.00 0.00 0.00 3.24
326 332 6.471519 GCAGCAAAATGAATGAATCTACACTC 59.528 38.462 0.00 0.00 0.00 3.51
330 336 5.335127 ACGCAGCAAAATGAATGAATCTAC 58.665 37.500 0.00 0.00 0.00 2.59
337 343 5.572211 ACTACATACGCAGCAAAATGAATG 58.428 37.500 5.79 0.00 0.00 2.67
339 345 5.180304 TGAACTACATACGCAGCAAAATGAA 59.820 36.000 5.79 0.00 0.00 2.57
341 347 4.968626 TGAACTACATACGCAGCAAAATG 58.031 39.130 0.00 0.00 0.00 2.32
382 388 9.379791 CTTCCTCCGTTTGTAAATATAAGTCTT 57.620 33.333 0.00 0.00 0.00 3.01
383 389 8.537858 ACTTCCTCCGTTTGTAAATATAAGTCT 58.462 33.333 0.00 0.00 0.00 3.24
396 402 6.128363 GGATACTGTTTTACTTCCTCCGTTTG 60.128 42.308 0.00 0.00 0.00 2.93
397 403 5.936372 GGATACTGTTTTACTTCCTCCGTTT 59.064 40.000 0.00 0.00 0.00 3.60
418 424 9.103582 AGATAGCTATGAAATGAAGAAGAGGAT 57.896 33.333 11.94 0.00 0.00 3.24
419 425 8.489676 AGATAGCTATGAAATGAAGAAGAGGA 57.510 34.615 11.94 0.00 0.00 3.71
420 426 8.991026 CAAGATAGCTATGAAATGAAGAAGAGG 58.009 37.037 11.94 0.00 0.00 3.69
421 427 9.545105 ACAAGATAGCTATGAAATGAAGAAGAG 57.455 33.333 11.94 0.00 0.00 2.85
422 428 9.896645 AACAAGATAGCTATGAAATGAAGAAGA 57.103 29.630 11.94 0.00 0.00 2.87
425 431 8.896744 CCAAACAAGATAGCTATGAAATGAAGA 58.103 33.333 11.94 0.00 0.00 2.87
426 432 8.133627 CCCAAACAAGATAGCTATGAAATGAAG 58.866 37.037 11.94 0.00 0.00 3.02
427 433 7.833682 TCCCAAACAAGATAGCTATGAAATGAA 59.166 33.333 11.94 0.00 0.00 2.57
428 434 7.345691 TCCCAAACAAGATAGCTATGAAATGA 58.654 34.615 11.94 0.00 0.00 2.57
429 435 7.572523 TCCCAAACAAGATAGCTATGAAATG 57.427 36.000 11.94 6.99 0.00 2.32
430 436 6.264067 GCTCCCAAACAAGATAGCTATGAAAT 59.736 38.462 11.94 0.00 0.00 2.17
431 437 5.590259 GCTCCCAAACAAGATAGCTATGAAA 59.410 40.000 11.94 0.00 0.00 2.69
432 438 5.126067 GCTCCCAAACAAGATAGCTATGAA 58.874 41.667 11.94 0.00 0.00 2.57
433 439 4.164030 TGCTCCCAAACAAGATAGCTATGA 59.836 41.667 11.94 0.00 0.00 2.15
434 440 4.274459 GTGCTCCCAAACAAGATAGCTATG 59.726 45.833 11.94 0.47 0.00 2.23
435 441 4.455606 GTGCTCCCAAACAAGATAGCTAT 58.544 43.478 5.76 5.76 0.00 2.97
436 442 3.370527 GGTGCTCCCAAACAAGATAGCTA 60.371 47.826 0.00 0.00 0.00 3.32
437 443 2.619074 GGTGCTCCCAAACAAGATAGCT 60.619 50.000 0.00 0.00 0.00 3.32
438 444 1.745653 GGTGCTCCCAAACAAGATAGC 59.254 52.381 0.00 0.00 0.00 2.97
439 445 3.356529 AGGTGCTCCCAAACAAGATAG 57.643 47.619 0.00 0.00 34.66 2.08
440 446 4.385199 CCATAGGTGCTCCCAAACAAGATA 60.385 45.833 0.00 0.00 34.66 1.98
441 447 3.624777 CATAGGTGCTCCCAAACAAGAT 58.375 45.455 0.00 0.00 34.66 2.40
442 448 2.290896 CCATAGGTGCTCCCAAACAAGA 60.291 50.000 0.00 0.00 34.66 3.02
443 449 2.094675 CCATAGGTGCTCCCAAACAAG 58.905 52.381 0.00 0.00 34.66 3.16
444 450 1.890573 GCCATAGGTGCTCCCAAACAA 60.891 52.381 0.00 0.00 34.66 2.83
445 451 0.323360 GCCATAGGTGCTCCCAAACA 60.323 55.000 0.00 0.00 34.66 2.83
446 452 0.034089 AGCCATAGGTGCTCCCAAAC 60.034 55.000 0.00 0.00 32.41 2.93
447 453 2.397815 AGCCATAGGTGCTCCCAAA 58.602 52.632 0.00 0.00 32.41 3.28
448 454 4.169452 AGCCATAGGTGCTCCCAA 57.831 55.556 0.00 0.00 32.41 4.12
453 459 4.488303 ACCTGAGCCATAGGTGCT 57.512 55.556 3.57 0.00 46.48 4.40
466 472 6.029346 ACAAAGAAAATATTCAGGCACCTG 57.971 37.500 10.60 10.60 44.86 4.00
467 473 6.670695 AACAAAGAAAATATTCAGGCACCT 57.329 33.333 0.00 0.00 38.06 4.00
468 474 6.928492 TGAAACAAAGAAAATATTCAGGCACC 59.072 34.615 0.00 0.00 38.06 5.01
469 475 7.653311 ACTGAAACAAAGAAAATATTCAGGCAC 59.347 33.333 15.32 0.00 44.90 5.01
470 476 7.725251 ACTGAAACAAAGAAAATATTCAGGCA 58.275 30.769 15.32 0.00 44.90 4.75
471 477 8.232497 GACTGAAACAAAGAAAATATTCAGGC 57.768 34.615 15.32 10.10 44.90 4.85
479 485 9.750125 GGAACAATAGACTGAAACAAAGAAAAT 57.250 29.630 0.00 0.00 0.00 1.82
480 486 8.194769 GGGAACAATAGACTGAAACAAAGAAAA 58.805 33.333 0.00 0.00 0.00 2.29
481 487 7.559897 AGGGAACAATAGACTGAAACAAAGAAA 59.440 33.333 0.00 0.00 0.00 2.52
482 488 7.013274 CAGGGAACAATAGACTGAAACAAAGAA 59.987 37.037 0.00 0.00 0.00 2.52
483 489 6.486657 CAGGGAACAATAGACTGAAACAAAGA 59.513 38.462 0.00 0.00 0.00 2.52
484 490 6.486657 TCAGGGAACAATAGACTGAAACAAAG 59.513 38.462 0.00 0.00 35.45 2.77
485 491 6.361433 TCAGGGAACAATAGACTGAAACAAA 58.639 36.000 0.00 0.00 35.45 2.83
486 492 5.935945 TCAGGGAACAATAGACTGAAACAA 58.064 37.500 0.00 0.00 35.45 2.83
487 493 5.560722 TCAGGGAACAATAGACTGAAACA 57.439 39.130 0.00 0.00 35.45 2.83
488 494 6.877611 TTTCAGGGAACAATAGACTGAAAC 57.122 37.500 12.50 0.00 46.90 2.78
490 496 4.994852 CGTTTCAGGGAACAATAGACTGAA 59.005 41.667 0.00 0.00 43.92 3.02
491 497 4.039973 ACGTTTCAGGGAACAATAGACTGA 59.960 41.667 0.00 0.00 36.49 3.41
492 498 4.315803 ACGTTTCAGGGAACAATAGACTG 58.684 43.478 0.00 0.00 0.00 3.51
493 499 4.618920 ACGTTTCAGGGAACAATAGACT 57.381 40.909 0.00 0.00 0.00 3.24
494 500 5.237779 TCAAACGTTTCAGGGAACAATAGAC 59.762 40.000 11.37 0.00 0.00 2.59
495 501 5.369833 TCAAACGTTTCAGGGAACAATAGA 58.630 37.500 11.37 0.00 0.00 1.98
496 502 5.682943 TCAAACGTTTCAGGGAACAATAG 57.317 39.130 11.37 0.00 0.00 1.73
497 503 6.263392 TGAATCAAACGTTTCAGGGAACAATA 59.737 34.615 11.37 0.00 0.00 1.90
498 504 5.068460 TGAATCAAACGTTTCAGGGAACAAT 59.932 36.000 11.37 0.00 0.00 2.71
499 505 4.399618 TGAATCAAACGTTTCAGGGAACAA 59.600 37.500 11.37 0.00 0.00 2.83
500 506 3.948473 TGAATCAAACGTTTCAGGGAACA 59.052 39.130 11.37 7.67 0.00 3.18
501 507 4.201970 TGTGAATCAAACGTTTCAGGGAAC 60.202 41.667 11.37 6.46 32.79 3.62
502 508 3.948473 TGTGAATCAAACGTTTCAGGGAA 59.052 39.130 11.37 0.00 32.79 3.97
503 509 3.546724 TGTGAATCAAACGTTTCAGGGA 58.453 40.909 11.37 5.88 32.79 4.20
504 510 3.980646 TGTGAATCAAACGTTTCAGGG 57.019 42.857 11.37 0.00 32.79 4.45
505 511 4.023279 TGGATGTGAATCAAACGTTTCAGG 60.023 41.667 11.37 0.00 32.79 3.86
506 512 5.107109 TGGATGTGAATCAAACGTTTCAG 57.893 39.130 11.37 0.79 32.79 3.02
507 513 5.506686 TTGGATGTGAATCAAACGTTTCA 57.493 34.783 11.37 0.00 0.00 2.69
508 514 6.148948 TCATTGGATGTGAATCAAACGTTTC 58.851 36.000 11.37 0.01 0.00 2.78
509 515 6.083098 TCATTGGATGTGAATCAAACGTTT 57.917 33.333 7.96 7.96 0.00 3.60
510 516 5.703978 TCATTGGATGTGAATCAAACGTT 57.296 34.783 0.00 0.00 0.00 3.99
511 517 5.241506 ACTTCATTGGATGTGAATCAAACGT 59.758 36.000 0.00 0.00 35.26 3.99
512 518 5.702865 ACTTCATTGGATGTGAATCAAACG 58.297 37.500 0.00 0.00 35.26 3.60
513 519 9.643693 ATTAACTTCATTGGATGTGAATCAAAC 57.356 29.630 0.00 0.00 35.26 2.93
515 521 9.642327 CAATTAACTTCATTGGATGTGAATCAA 57.358 29.630 0.00 0.00 33.34 2.57
516 522 8.805175 ACAATTAACTTCATTGGATGTGAATCA 58.195 29.630 1.69 0.00 33.34 2.57
517 523 9.643693 AACAATTAACTTCATTGGATGTGAATC 57.356 29.630 1.69 0.00 33.34 2.52
518 524 9.643693 GAACAATTAACTTCATTGGATGTGAAT 57.356 29.630 1.69 0.00 35.03 2.57
519 525 8.859090 AGAACAATTAACTTCATTGGATGTGAA 58.141 29.630 1.69 0.00 36.15 3.18
520 526 8.298854 CAGAACAATTAACTTCATTGGATGTGA 58.701 33.333 1.69 0.00 36.15 3.58
521 527 8.298854 TCAGAACAATTAACTTCATTGGATGTG 58.701 33.333 1.69 0.17 36.15 3.21
522 528 8.408043 TCAGAACAATTAACTTCATTGGATGT 57.592 30.769 1.69 0.00 36.15 3.06
523 529 9.865321 AATCAGAACAATTAACTTCATTGGATG 57.135 29.630 1.69 0.00 36.15 3.51
556 562 5.065731 GCTGAGTATTGGAATTGACTGGAAG 59.934 44.000 0.00 0.00 42.29 3.46
557 563 4.943705 GCTGAGTATTGGAATTGACTGGAA 59.056 41.667 0.00 0.00 0.00 3.53
558 564 4.517285 GCTGAGTATTGGAATTGACTGGA 58.483 43.478 0.00 0.00 0.00 3.86
559 565 3.629398 GGCTGAGTATTGGAATTGACTGG 59.371 47.826 0.00 0.00 0.00 4.00
560 566 3.629398 GGGCTGAGTATTGGAATTGACTG 59.371 47.826 0.00 0.00 0.00 3.51
561 567 3.682718 CGGGCTGAGTATTGGAATTGACT 60.683 47.826 0.00 0.00 0.00 3.41
562 568 2.614057 CGGGCTGAGTATTGGAATTGAC 59.386 50.000 0.00 0.00 0.00 3.18
563 569 2.503765 TCGGGCTGAGTATTGGAATTGA 59.496 45.455 0.00 0.00 0.00 2.57
564 570 2.917933 TCGGGCTGAGTATTGGAATTG 58.082 47.619 0.00 0.00 0.00 2.32
565 571 3.136443 TGATCGGGCTGAGTATTGGAATT 59.864 43.478 1.04 0.00 0.00 2.17
566 572 2.705658 TGATCGGGCTGAGTATTGGAAT 59.294 45.455 1.04 0.00 0.00 3.01
567 573 2.115427 TGATCGGGCTGAGTATTGGAA 58.885 47.619 1.04 0.00 0.00 3.53
568 574 1.788229 TGATCGGGCTGAGTATTGGA 58.212 50.000 1.04 0.00 0.00 3.53
569 575 2.213499 GTTGATCGGGCTGAGTATTGG 58.787 52.381 1.04 0.00 0.00 3.16
570 576 2.213499 GGTTGATCGGGCTGAGTATTG 58.787 52.381 1.04 0.00 0.00 1.90
571 577 1.837439 TGGTTGATCGGGCTGAGTATT 59.163 47.619 1.04 0.00 0.00 1.89
572 578 1.496060 TGGTTGATCGGGCTGAGTAT 58.504 50.000 1.04 0.00 0.00 2.12
573 579 1.066430 GTTGGTTGATCGGGCTGAGTA 60.066 52.381 1.04 0.00 0.00 2.59
574 580 0.321653 GTTGGTTGATCGGGCTGAGT 60.322 55.000 1.04 0.00 0.00 3.41
575 581 1.361668 CGTTGGTTGATCGGGCTGAG 61.362 60.000 1.04 0.00 0.00 3.35
576 582 1.375396 CGTTGGTTGATCGGGCTGA 60.375 57.895 0.00 0.00 0.00 4.26
577 583 3.039202 GCGTTGGTTGATCGGGCTG 62.039 63.158 0.00 0.00 0.00 4.85
578 584 2.746277 GCGTTGGTTGATCGGGCT 60.746 61.111 0.00 0.00 0.00 5.19
579 585 3.810896 GGCGTTGGTTGATCGGGC 61.811 66.667 0.00 0.00 0.00 6.13
580 586 3.131478 GGGCGTTGGTTGATCGGG 61.131 66.667 0.00 0.00 0.00 5.14
581 587 2.359354 TGGGCGTTGGTTGATCGG 60.359 61.111 0.00 0.00 0.00 4.18
582 588 3.039202 GCTGGGCGTTGGTTGATCG 62.039 63.158 0.00 0.00 0.00 3.69
583 589 1.926511 CTGCTGGGCGTTGGTTGATC 61.927 60.000 0.00 0.00 0.00 2.92
584 590 1.973281 CTGCTGGGCGTTGGTTGAT 60.973 57.895 0.00 0.00 0.00 2.57
585 591 2.594303 CTGCTGGGCGTTGGTTGA 60.594 61.111 0.00 0.00 0.00 3.18
586 592 2.594303 TCTGCTGGGCGTTGGTTG 60.594 61.111 0.00 0.00 0.00 3.77
587 593 2.594592 GTCTGCTGGGCGTTGGTT 60.595 61.111 0.00 0.00 0.00 3.67
588 594 3.832237 CTGTCTGCTGGGCGTTGGT 62.832 63.158 0.00 0.00 0.00 3.67
589 595 3.052082 CTGTCTGCTGGGCGTTGG 61.052 66.667 0.00 0.00 0.00 3.77
590 596 3.052082 CCTGTCTGCTGGGCGTTG 61.052 66.667 0.00 0.00 0.00 4.10
591 597 2.738213 CTTCCTGTCTGCTGGGCGTT 62.738 60.000 0.00 0.00 34.83 4.84
592 598 3.241530 TTCCTGTCTGCTGGGCGT 61.242 61.111 0.00 0.00 34.83 5.68
593 599 2.435586 CTTCCTGTCTGCTGGGCG 60.436 66.667 0.00 0.00 34.83 6.13
594 600 1.673665 CACTTCCTGTCTGCTGGGC 60.674 63.158 0.00 0.00 34.83 5.36
595 601 1.673665 GCACTTCCTGTCTGCTGGG 60.674 63.158 0.00 0.00 34.83 4.45
596 602 0.610174 TAGCACTTCCTGTCTGCTGG 59.390 55.000 1.63 0.00 37.08 4.85
597 603 1.274728 AGTAGCACTTCCTGTCTGCTG 59.725 52.381 1.63 0.00 37.08 4.41
598 604 1.638529 AGTAGCACTTCCTGTCTGCT 58.361 50.000 0.00 0.00 39.36 4.24
599 605 3.712187 GATAGTAGCACTTCCTGTCTGC 58.288 50.000 0.00 0.00 0.00 4.26
600 606 3.628032 TCGATAGTAGCACTTCCTGTCTG 59.372 47.826 0.00 0.00 37.40 3.51
601 607 3.887352 TCGATAGTAGCACTTCCTGTCT 58.113 45.455 0.00 0.00 37.40 3.41
602 608 4.602995 CTTCGATAGTAGCACTTCCTGTC 58.397 47.826 0.00 0.00 37.40 3.51
603 609 4.640789 CTTCGATAGTAGCACTTCCTGT 57.359 45.455 0.00 0.00 37.40 4.00
613 619 3.536956 TTGGTTGGGCTTCGATAGTAG 57.463 47.619 0.00 0.00 36.47 2.57
614 620 3.452990 TGATTGGTTGGGCTTCGATAGTA 59.547 43.478 0.00 0.00 37.40 1.82
615 621 2.238646 TGATTGGTTGGGCTTCGATAGT 59.761 45.455 0.00 0.00 37.40 2.12
616 622 2.917933 TGATTGGTTGGGCTTCGATAG 58.082 47.619 0.00 0.00 0.00 2.08
617 623 3.358111 TTGATTGGTTGGGCTTCGATA 57.642 42.857 0.00 0.00 0.00 2.92
618 624 2.214376 TTGATTGGTTGGGCTTCGAT 57.786 45.000 0.00 0.00 0.00 3.59
619 625 1.885887 CTTTGATTGGTTGGGCTTCGA 59.114 47.619 0.00 0.00 0.00 3.71
620 626 1.669795 GCTTTGATTGGTTGGGCTTCG 60.670 52.381 0.00 0.00 0.00 3.79
621 627 1.338105 GGCTTTGATTGGTTGGGCTTC 60.338 52.381 0.00 0.00 0.00 3.86
622 628 0.686789 GGCTTTGATTGGTTGGGCTT 59.313 50.000 0.00 0.00 0.00 4.35
623 629 1.194121 GGGCTTTGATTGGTTGGGCT 61.194 55.000 0.00 0.00 0.00 5.19
624 630 1.296392 GGGCTTTGATTGGTTGGGC 59.704 57.895 0.00 0.00 0.00 5.36
625 631 1.055040 TTGGGCTTTGATTGGTTGGG 58.945 50.000 0.00 0.00 0.00 4.12
626 632 1.415659 TGTTGGGCTTTGATTGGTTGG 59.584 47.619 0.00 0.00 0.00 3.77
627 633 2.906691 TGTTGGGCTTTGATTGGTTG 57.093 45.000 0.00 0.00 0.00 3.77
628 634 3.390639 TGATTGTTGGGCTTTGATTGGTT 59.609 39.130 0.00 0.00 0.00 3.67
629 635 2.971330 TGATTGTTGGGCTTTGATTGGT 59.029 40.909 0.00 0.00 0.00 3.67
630 636 3.681593 TGATTGTTGGGCTTTGATTGG 57.318 42.857 0.00 0.00 0.00 3.16
631 637 4.634199 AGTTGATTGTTGGGCTTTGATTG 58.366 39.130 0.00 0.00 0.00 2.67
632 638 4.961438 AGTTGATTGTTGGGCTTTGATT 57.039 36.364 0.00 0.00 0.00 2.57
633 639 4.220602 GGTAGTTGATTGTTGGGCTTTGAT 59.779 41.667 0.00 0.00 0.00 2.57
634 640 3.572255 GGTAGTTGATTGTTGGGCTTTGA 59.428 43.478 0.00 0.00 0.00 2.69
635 641 3.306019 GGGTAGTTGATTGTTGGGCTTTG 60.306 47.826 0.00 0.00 0.00 2.77
636 642 2.897326 GGGTAGTTGATTGTTGGGCTTT 59.103 45.455 0.00 0.00 0.00 3.51
637 643 2.158385 TGGGTAGTTGATTGTTGGGCTT 60.158 45.455 0.00 0.00 0.00 4.35
638 644 1.427368 TGGGTAGTTGATTGTTGGGCT 59.573 47.619 0.00 0.00 0.00 5.19
639 645 1.818674 CTGGGTAGTTGATTGTTGGGC 59.181 52.381 0.00 0.00 0.00 5.36
640 646 3.009033 TCTCTGGGTAGTTGATTGTTGGG 59.991 47.826 0.00 0.00 0.00 4.12
641 647 4.256920 CTCTCTGGGTAGTTGATTGTTGG 58.743 47.826 0.00 0.00 0.00 3.77
642 648 4.256920 CCTCTCTGGGTAGTTGATTGTTG 58.743 47.826 0.00 0.00 0.00 3.33
643 649 3.910627 ACCTCTCTGGGTAGTTGATTGTT 59.089 43.478 0.00 0.00 41.11 2.83
644 650 3.521727 ACCTCTCTGGGTAGTTGATTGT 58.478 45.455 0.00 0.00 41.11 2.71
645 651 5.677319 TTACCTCTCTGGGTAGTTGATTG 57.323 43.478 0.00 0.00 42.04 2.67
646 652 6.697641 TTTTACCTCTCTGGGTAGTTGATT 57.302 37.500 0.00 0.00 42.04 2.57
647 653 6.697641 TTTTTACCTCTCTGGGTAGTTGAT 57.302 37.500 0.00 0.00 42.04 2.57
673 679 9.620660 GGTCATGTACAAAGAAAAATATCGTTT 57.379 29.630 0.00 0.00 0.00 3.60
674 680 8.788806 TGGTCATGTACAAAGAAAAATATCGTT 58.211 29.630 0.00 0.00 0.00 3.85
675 681 8.234546 GTGGTCATGTACAAAGAAAAATATCGT 58.765 33.333 0.00 0.00 0.00 3.73
676 682 8.233868 TGTGGTCATGTACAAAGAAAAATATCG 58.766 33.333 0.00 0.00 0.00 2.92
677 683 9.341899 GTGTGGTCATGTACAAAGAAAAATATC 57.658 33.333 0.00 0.00 0.00 1.63
678 684 8.855110 TGTGTGGTCATGTACAAAGAAAAATAT 58.145 29.630 0.00 0.00 0.00 1.28
679 685 8.132362 GTGTGTGGTCATGTACAAAGAAAAATA 58.868 33.333 0.00 0.00 0.00 1.40
680 686 6.978080 GTGTGTGGTCATGTACAAAGAAAAAT 59.022 34.615 0.00 0.00 0.00 1.82
681 687 6.151985 AGTGTGTGGTCATGTACAAAGAAAAA 59.848 34.615 0.00 0.00 0.00 1.94
682 688 5.650266 AGTGTGTGGTCATGTACAAAGAAAA 59.350 36.000 0.00 0.00 0.00 2.29
683 689 5.189928 AGTGTGTGGTCATGTACAAAGAAA 58.810 37.500 0.00 0.00 0.00 2.52
684 690 4.776349 AGTGTGTGGTCATGTACAAAGAA 58.224 39.130 0.00 0.00 0.00 2.52
685 691 4.415881 AGTGTGTGGTCATGTACAAAGA 57.584 40.909 0.00 0.00 0.00 2.52
686 692 6.871492 TGTATAGTGTGTGGTCATGTACAAAG 59.129 38.462 0.00 0.00 0.00 2.77
687 693 6.760291 TGTATAGTGTGTGGTCATGTACAAA 58.240 36.000 0.00 0.00 0.00 2.83
688 694 6.347859 TGTATAGTGTGTGGTCATGTACAA 57.652 37.500 0.00 0.00 0.00 2.41
689 695 5.986501 TGTATAGTGTGTGGTCATGTACA 57.013 39.130 0.00 0.00 0.00 2.90
690 696 7.485810 TGTATGTATAGTGTGTGGTCATGTAC 58.514 38.462 0.00 0.00 0.00 2.90
691 697 7.648039 TGTATGTATAGTGTGTGGTCATGTA 57.352 36.000 0.00 0.00 0.00 2.29
692 698 6.538945 TGTATGTATAGTGTGTGGTCATGT 57.461 37.500 0.00 0.00 0.00 3.21
693 699 7.841915 TTTGTATGTATAGTGTGTGGTCATG 57.158 36.000 0.00 0.00 0.00 3.07
694 700 7.064134 CGTTTTGTATGTATAGTGTGTGGTCAT 59.936 37.037 0.00 0.00 0.00 3.06
695 701 6.366604 CGTTTTGTATGTATAGTGTGTGGTCA 59.633 38.462 0.00 0.00 0.00 4.02
696 702 6.671402 GCGTTTTGTATGTATAGTGTGTGGTC 60.671 42.308 0.00 0.00 0.00 4.02
697 703 5.121142 GCGTTTTGTATGTATAGTGTGTGGT 59.879 40.000 0.00 0.00 0.00 4.16
698 704 5.446741 GGCGTTTTGTATGTATAGTGTGTGG 60.447 44.000 0.00 0.00 0.00 4.17
699 705 5.446741 GGGCGTTTTGTATGTATAGTGTGTG 60.447 44.000 0.00 0.00 0.00 3.82
700 706 4.632688 GGGCGTTTTGTATGTATAGTGTGT 59.367 41.667 0.00 0.00 0.00 3.72
701 707 4.034742 GGGGCGTTTTGTATGTATAGTGTG 59.965 45.833 0.00 0.00 0.00 3.82
702 708 4.193865 GGGGCGTTTTGTATGTATAGTGT 58.806 43.478 0.00 0.00 0.00 3.55
703 709 3.246699 CGGGGCGTTTTGTATGTATAGTG 59.753 47.826 0.00 0.00 0.00 2.74
704 710 3.118665 ACGGGGCGTTTTGTATGTATAGT 60.119 43.478 0.00 0.00 36.35 2.12
705 711 3.246699 CACGGGGCGTTTTGTATGTATAG 59.753 47.826 0.00 0.00 38.32 1.31
706 712 3.196463 CACGGGGCGTTTTGTATGTATA 58.804 45.455 0.00 0.00 38.32 1.47
707 713 2.011222 CACGGGGCGTTTTGTATGTAT 58.989 47.619 0.00 0.00 38.32 2.29
708 714 1.270732 ACACGGGGCGTTTTGTATGTA 60.271 47.619 0.00 0.00 38.32 2.29
709 715 0.535553 ACACGGGGCGTTTTGTATGT 60.536 50.000 0.00 0.00 38.32 2.29
710 716 1.129064 GTACACGGGGCGTTTTGTATG 59.871 52.381 0.00 0.00 38.32 2.39
711 717 1.002315 AGTACACGGGGCGTTTTGTAT 59.998 47.619 0.00 0.00 38.32 2.29
712 718 0.392336 AGTACACGGGGCGTTTTGTA 59.608 50.000 0.00 0.00 38.32 2.41
713 719 0.464193 AAGTACACGGGGCGTTTTGT 60.464 50.000 0.00 0.00 38.32 2.83
714 720 0.664224 AAAGTACACGGGGCGTTTTG 59.336 50.000 0.00 0.00 38.32 2.44
715 721 1.334556 GAAAAGTACACGGGGCGTTTT 59.665 47.619 0.00 0.00 38.32 2.43
716 722 0.946528 GAAAAGTACACGGGGCGTTT 59.053 50.000 0.00 0.00 38.32 3.60
717 723 0.886043 GGAAAAGTACACGGGGCGTT 60.886 55.000 0.00 0.00 38.32 4.84
718 724 1.301953 GGAAAAGTACACGGGGCGT 60.302 57.895 0.00 0.00 42.36 5.68
719 725 2.036571 GGGAAAAGTACACGGGGCG 61.037 63.158 0.00 0.00 0.00 6.13
720 726 0.675837 GAGGGAAAAGTACACGGGGC 60.676 60.000 0.00 0.00 0.00 5.80
721 727 0.981943 AGAGGGAAAAGTACACGGGG 59.018 55.000 0.00 0.00 0.00 5.73
722 728 2.830321 ACTAGAGGGAAAAGTACACGGG 59.170 50.000 0.00 0.00 0.00 5.28
723 729 4.532314 AACTAGAGGGAAAAGTACACGG 57.468 45.455 0.00 0.00 0.00 4.94
724 730 5.648572 CCTAACTAGAGGGAAAAGTACACG 58.351 45.833 0.00 0.00 32.39 4.49
753 759 4.754667 GTCGCCCCGGGAGAACAC 62.755 72.222 26.32 7.19 32.47 3.32
774 782 3.599285 AAAACCTCGATGGCGGCGA 62.599 57.895 12.98 1.68 40.22 5.54
782 790 1.580059 TAGGGGAGCAAAACCTCGAT 58.420 50.000 0.00 0.00 35.84 3.59
784 792 1.806623 CGATAGGGGAGCAAAACCTCG 60.807 57.143 0.00 0.00 35.84 4.63
789 797 1.153249 CGGCGATAGGGGAGCAAAA 60.153 57.895 0.00 0.00 0.00 2.44
861 876 2.490217 CCTCGACACAGGCGTAGG 59.510 66.667 0.00 0.00 0.00 3.18
869 884 2.636412 CGCTTCCTCCCTCGACACA 61.636 63.158 0.00 0.00 0.00 3.72
883 898 1.376812 CCCTAAACTTCCGCCGCTT 60.377 57.895 0.00 0.00 0.00 4.68
904 920 0.962356 CAGATCAGGTTGTGTGGGGC 60.962 60.000 0.00 0.00 0.00 5.80
927 944 3.891977 CCATTAGATCTCTCACCCGAAGA 59.108 47.826 0.00 0.00 0.00 2.87
974 992 5.928976 TCTTCTCAACTTCACTGATTTCCA 58.071 37.500 0.00 0.00 0.00 3.53
977 995 7.881751 TCATCATCTTCTCAACTTCACTGATTT 59.118 33.333 0.00 0.00 0.00 2.17
1139 1157 0.813184 CCATGCCGCTCTCATGTTTT 59.187 50.000 0.00 0.00 39.60 2.43
1161 1179 1.776662 ACTTAGCCTCCTGTGCGATA 58.223 50.000 0.00 0.00 0.00 2.92
1269 1287 1.380785 AATCACCGCGTCCCCTCTA 60.381 57.895 4.92 0.00 0.00 2.43
1374 1393 1.813092 GCCACCAGATGAGCATACAGG 60.813 57.143 0.00 0.00 0.00 4.00
1423 1442 4.806330 TGTGAGTTCGGTTCTGAGAATAC 58.194 43.478 0.00 0.00 0.00 1.89
1524 1543 7.990055 TGTATATCTGTCTCTTCCCATCTCTA 58.010 38.462 0.00 0.00 0.00 2.43
1628 1647 5.012871 ACAAGTGATGATGGAGGATGGATAG 59.987 44.000 0.00 0.00 0.00 2.08
1645 1664 4.058124 CGGAGATCTTTGAACACAAGTGA 58.942 43.478 7.28 0.00 0.00 3.41
1659 1678 2.132996 CCAGCTGGCTCGGAGATCT 61.133 63.158 22.33 0.00 33.89 2.75
1742 1762 3.056328 GCTTGAACGCCCCCTGAC 61.056 66.667 0.00 0.00 0.00 3.51
1775 1796 1.217511 CTGTCATGTCGCCTCAGCT 59.782 57.895 0.00 0.00 36.60 4.24
1778 1799 1.256812 TCTTCTGTCATGTCGCCTCA 58.743 50.000 0.00 0.00 0.00 3.86
1796 1817 6.594547 ACATGATCTGCACTATGAGCATATTC 59.405 38.462 0.00 0.00 41.82 1.75
1830 1862 0.253160 ATCACTGGCCACCCCTCTAA 60.253 55.000 0.00 0.00 0.00 2.10
1831 1863 0.982852 CATCACTGGCCACCCCTCTA 60.983 60.000 0.00 0.00 0.00 2.43
1834 1866 4.052518 GCATCACTGGCCACCCCT 62.053 66.667 0.00 0.00 0.00 4.79
1897 1930 2.468915 GTTGTAGTTCCTCTAGCCCCT 58.531 52.381 0.00 0.00 0.00 4.79
1931 1967 2.376518 TCACTTCTTCCCCTGCATTCTT 59.623 45.455 0.00 0.00 0.00 2.52
2024 2061 2.495809 GAGTCCTCCTCCGTCTTCC 58.504 63.158 0.00 0.00 33.79 3.46
2174 2211 1.271102 GTAGGGGCAAATTTGTTCGCA 59.729 47.619 19.03 8.59 0.00 5.10
2218 2263 1.682323 CTACCCTCGAGCCTTCTAACC 59.318 57.143 6.99 0.00 0.00 2.85
2278 2323 5.163550 CCACTTCTACCACGACTATCAATCA 60.164 44.000 0.00 0.00 0.00 2.57
2479 2554 3.341823 CAAGGCAGATTGCTAGAAGTGT 58.658 45.455 0.00 0.00 44.28 3.55
2644 2719 4.499696 CCCGCACTTTCTTTTCAAATGTCT 60.500 41.667 0.00 0.00 0.00 3.41
2664 2739 1.912417 CTAGTGTAGGATCCTCCCCG 58.088 60.000 20.22 0.00 37.19 5.73
2756 2839 1.741770 GTCCGAAGACGCTGCCATT 60.742 57.895 0.00 0.00 38.29 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.