Multiple sequence alignment - TraesCS6A01G337900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G337900 chr6A 100.000 4513 0 0 1 4513 571792642 571788130 0.000000e+00 8335.0
1 TraesCS6A01G337900 chr6A 87.500 2584 261 28 852 3392 571701078 571698514 0.000000e+00 2926.0
2 TraesCS6A01G337900 chr6A 87.857 2273 246 16 1131 3375 572336161 572338431 0.000000e+00 2641.0
3 TraesCS6A01G337900 chr6A 85.316 2404 286 34 1010 3368 17956096 17958477 0.000000e+00 2422.0
4 TraesCS6A01G337900 chr6A 93.553 760 21 4 3782 4513 571742564 571741805 0.000000e+00 1107.0
5 TraesCS6A01G337900 chr6A 92.703 740 44 6 3782 4513 571692558 571693295 0.000000e+00 1059.0
6 TraesCS6A01G337900 chr6B 91.901 2593 155 17 849 3396 642909506 642906924 0.000000e+00 3574.0
7 TraesCS6A01G337900 chr6B 86.698 2571 283 30 852 3384 642894519 642891970 0.000000e+00 2798.0
8 TraesCS6A01G337900 chr6B 87.539 2271 257 11 1131 3375 643639417 643641687 0.000000e+00 2603.0
9 TraesCS6A01G337900 chr6B 85.222 2497 307 34 903 3365 643822550 643825018 0.000000e+00 2510.0
10 TraesCS6A01G337900 chr6B 84.609 2378 309 32 1010 3350 30457315 30454958 0.000000e+00 2311.0
11 TraesCS6A01G337900 chr6B 89.810 579 33 15 3 560 642912473 642911900 0.000000e+00 719.0
12 TraesCS6A01G337900 chr6B 85.766 274 37 2 3463 3735 120807267 120807539 5.710000e-74 289.0
13 TraesCS6A01G337900 chr6B 89.815 216 9 2 558 770 642909781 642909576 9.630000e-67 265.0
14 TraesCS6A01G337900 chr6D 92.734 2092 114 21 1396 3458 427076993 427074911 0.000000e+00 2987.0
15 TraesCS6A01G337900 chr6D 87.354 2562 274 22 852 3374 427072675 427070125 0.000000e+00 2891.0
16 TraesCS6A01G337900 chr6D 87.116 2406 259 29 1001 3375 427713251 427710866 0.000000e+00 2678.0
17 TraesCS6A01G337900 chr6D 85.238 2520 306 32 888 3365 427700766 427698271 0.000000e+00 2532.0
18 TraesCS6A01G337900 chr6D 91.959 883 42 16 1 862 427085052 427084178 0.000000e+00 1210.0
19 TraesCS6A01G337900 chr6D 79.073 1424 257 26 1966 3358 427266892 427268305 0.000000e+00 941.0
20 TraesCS6A01G337900 chr6D 83.513 1019 139 16 2375 3365 427894523 427893506 0.000000e+00 924.0
21 TraesCS6A01G337900 chr6D 90.161 559 29 10 859 1400 427082726 427082177 0.000000e+00 704.0
22 TraesCS6A01G337900 chr6D 83.575 621 71 18 2606 3217 17321444 17322042 1.830000e-153 553.0
23 TraesCS6A01G337900 chr6D 84.174 436 37 19 43 475 100371592 100371998 1.180000e-105 394.0
24 TraesCS6A01G337900 chr6D 92.453 265 17 3 1 263 14719337 14719074 4.260000e-100 375.0
25 TraesCS6A01G337900 chr6D 95.349 86 4 0 3224 3309 17322297 17322382 2.190000e-28 137.0
26 TraesCS6A01G337900 chr5A 94.872 741 29 5 3781 4513 571512597 571513336 0.000000e+00 1149.0
27 TraesCS6A01G337900 chr5A 94.324 740 33 5 3782 4513 571484345 571483607 0.000000e+00 1125.0
28 TraesCS6A01G337900 chr5A 85.984 742 65 24 3782 4513 52765213 52764501 0.000000e+00 758.0
29 TraesCS6A01G337900 chr5A 91.136 440 30 9 43 478 657265259 657264825 5.030000e-164 588.0
30 TraesCS6A01G337900 chr5A 87.785 483 44 10 1 478 74938242 74938714 6.600000e-153 551.0
31 TraesCS6A01G337900 chr7A 94.858 739 30 4 3782 4513 188136234 188135497 0.000000e+00 1147.0
32 TraesCS6A01G337900 chr7A 94.022 736 35 5 3782 4510 285702469 285703202 0.000000e+00 1107.0
33 TraesCS6A01G337900 chr7A 91.853 761 33 12 3782 4513 202762396 202763156 0.000000e+00 1035.0
34 TraesCS6A01G337900 chr3A 93.496 738 41 3 3782 4513 335186 334450 0.000000e+00 1090.0
35 TraesCS6A01G337900 chr3A 90.162 742 63 6 3780 4513 410500997 410501736 0.000000e+00 957.0
36 TraesCS6A01G337900 chr3A 85.818 275 36 3 3463 3735 689472303 689472576 5.710000e-74 289.0
37 TraesCS6A01G337900 chr1A 90.934 739 56 8 3782 4513 260905022 260905756 0.000000e+00 983.0
38 TraesCS6A01G337900 chr1A 87.523 553 37 21 18 544 465560595 465561141 1.070000e-170 610.0
39 TraesCS6A01G337900 chr2D 90.144 487 35 7 1 478 69917357 69916875 4.960000e-174 621.0
40 TraesCS6A01G337900 chr2D 89.717 389 33 7 72 456 546736168 546736553 1.460000e-134 490.0
41 TraesCS6A01G337900 chr2A 81.984 766 96 24 3782 4513 766297514 766296757 2.980000e-171 612.0
42 TraesCS6A01G337900 chr2A 85.507 276 36 3 3463 3735 762932699 762932425 7.390000e-73 285.0
43 TraesCS6A01G337900 chr5B 88.636 484 47 5 1 478 691774978 691774497 2.340000e-162 582.0
44 TraesCS6A01G337900 chr5B 88.382 482 40 11 1 478 88346753 88347222 2.360000e-157 566.0
45 TraesCS6A01G337900 chr5B 88.453 459 40 11 26 476 72250272 72250725 3.970000e-150 542.0
46 TraesCS6A01G337900 chr5B 85.507 276 35 4 3463 3735 538572228 538571955 2.660000e-72 283.0
47 TraesCS6A01G337900 chr5D 88.542 480 44 7 1 478 78793843 78794313 5.060000e-159 571.0
48 TraesCS6A01G337900 chr4B 90.719 431 34 6 49 476 66156320 66155893 1.820000e-158 569.0
49 TraesCS6A01G337900 chr1D 88.936 470 36 11 18 478 366204368 366203906 2.360000e-157 566.0
50 TraesCS6A01G337900 chr1D 86.717 527 39 20 43 543 238937004 238936483 1.420000e-154 556.0
51 TraesCS6A01G337900 chr1D 97.619 42 1 0 200 241 318100486 318100445 6.260000e-09 73.1
52 TraesCS6A01G337900 chr1B 88.621 457 41 9 26 476 658462220 658462671 3.070000e-151 545.0
53 TraesCS6A01G337900 chr1B 85.748 421 45 12 126 542 650493422 650493831 8.970000e-117 431.0
54 TraesCS6A01G337900 chr3D 90.960 354 27 5 1 352 577266677 577267027 5.280000e-129 472.0
55 TraesCS6A01G337900 chr3D 85.145 276 38 3 3462 3735 537679743 537680017 3.440000e-71 279.0
56 TraesCS6A01G337900 chr3B 86.182 275 35 3 3463 3735 64251979 64251706 1.230000e-75 294.0
57 TraesCS6A01G337900 chr2B 85.766 274 36 3 3463 3735 291371714 291371985 2.050000e-73 287.0
58 TraesCS6A01G337900 chr2B 85.145 276 37 3 3463 3735 90303062 90303336 3.440000e-71 279.0
59 TraesCS6A01G337900 chr2B 85.199 277 35 5 3463 3735 641409885 641409611 3.440000e-71 279.0
60 TraesCS6A01G337900 chr7D 78.601 486 60 23 80 543 40566276 40565813 9.560000e-72 281.0
61 TraesCS6A01G337900 chr4D 100.000 28 0 0 1090 1117 459686684 459686711 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G337900 chr6A 571788130 571792642 4512 True 8335.000000 8335 100.000000 1 4513 1 chr6A.!!$R3 4512
1 TraesCS6A01G337900 chr6A 571698514 571701078 2564 True 2926.000000 2926 87.500000 852 3392 1 chr6A.!!$R1 2540
2 TraesCS6A01G337900 chr6A 572336161 572338431 2270 False 2641.000000 2641 87.857000 1131 3375 1 chr6A.!!$F3 2244
3 TraesCS6A01G337900 chr6A 17956096 17958477 2381 False 2422.000000 2422 85.316000 1010 3368 1 chr6A.!!$F1 2358
4 TraesCS6A01G337900 chr6A 571741805 571742564 759 True 1107.000000 1107 93.553000 3782 4513 1 chr6A.!!$R2 731
5 TraesCS6A01G337900 chr6A 571692558 571693295 737 False 1059.000000 1059 92.703000 3782 4513 1 chr6A.!!$F2 731
6 TraesCS6A01G337900 chr6B 642891970 642894519 2549 True 2798.000000 2798 86.698000 852 3384 1 chr6B.!!$R2 2532
7 TraesCS6A01G337900 chr6B 643639417 643641687 2270 False 2603.000000 2603 87.539000 1131 3375 1 chr6B.!!$F2 2244
8 TraesCS6A01G337900 chr6B 643822550 643825018 2468 False 2510.000000 2510 85.222000 903 3365 1 chr6B.!!$F3 2462
9 TraesCS6A01G337900 chr6B 30454958 30457315 2357 True 2311.000000 2311 84.609000 1010 3350 1 chr6B.!!$R1 2340
10 TraesCS6A01G337900 chr6B 642906924 642912473 5549 True 1519.333333 3574 90.508667 3 3396 3 chr6B.!!$R3 3393
11 TraesCS6A01G337900 chr6D 427070125 427076993 6868 True 2939.000000 2987 90.044000 852 3458 2 chr6D.!!$R5 2606
12 TraesCS6A01G337900 chr6D 427710866 427713251 2385 True 2678.000000 2678 87.116000 1001 3375 1 chr6D.!!$R3 2374
13 TraesCS6A01G337900 chr6D 427698271 427700766 2495 True 2532.000000 2532 85.238000 888 3365 1 chr6D.!!$R2 2477
14 TraesCS6A01G337900 chr6D 427082177 427085052 2875 True 957.000000 1210 91.060000 1 1400 2 chr6D.!!$R6 1399
15 TraesCS6A01G337900 chr6D 427266892 427268305 1413 False 941.000000 941 79.073000 1966 3358 1 chr6D.!!$F2 1392
16 TraesCS6A01G337900 chr6D 427893506 427894523 1017 True 924.000000 924 83.513000 2375 3365 1 chr6D.!!$R4 990
17 TraesCS6A01G337900 chr6D 17321444 17322382 938 False 345.000000 553 89.462000 2606 3309 2 chr6D.!!$F3 703
18 TraesCS6A01G337900 chr5A 571512597 571513336 739 False 1149.000000 1149 94.872000 3781 4513 1 chr5A.!!$F2 732
19 TraesCS6A01G337900 chr5A 571483607 571484345 738 True 1125.000000 1125 94.324000 3782 4513 1 chr5A.!!$R2 731
20 TraesCS6A01G337900 chr5A 52764501 52765213 712 True 758.000000 758 85.984000 3782 4513 1 chr5A.!!$R1 731
21 TraesCS6A01G337900 chr7A 188135497 188136234 737 True 1147.000000 1147 94.858000 3782 4513 1 chr7A.!!$R1 731
22 TraesCS6A01G337900 chr7A 285702469 285703202 733 False 1107.000000 1107 94.022000 3782 4510 1 chr7A.!!$F2 728
23 TraesCS6A01G337900 chr7A 202762396 202763156 760 False 1035.000000 1035 91.853000 3782 4513 1 chr7A.!!$F1 731
24 TraesCS6A01G337900 chr3A 334450 335186 736 True 1090.000000 1090 93.496000 3782 4513 1 chr3A.!!$R1 731
25 TraesCS6A01G337900 chr3A 410500997 410501736 739 False 957.000000 957 90.162000 3780 4513 1 chr3A.!!$F1 733
26 TraesCS6A01G337900 chr1A 260905022 260905756 734 False 983.000000 983 90.934000 3782 4513 1 chr1A.!!$F1 731
27 TraesCS6A01G337900 chr1A 465560595 465561141 546 False 610.000000 610 87.523000 18 544 1 chr1A.!!$F2 526
28 TraesCS6A01G337900 chr2A 766296757 766297514 757 True 612.000000 612 81.984000 3782 4513 1 chr2A.!!$R2 731
29 TraesCS6A01G337900 chr1D 238936483 238937004 521 True 556.000000 556 86.717000 43 543 1 chr1D.!!$R1 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
983 5936 1.079819 CTGCCACTACCACACCTCG 60.080 63.158 0.00 0.0 0.0 4.63 F
1114 6073 2.122954 GGAGGTGGAGGTGGAGGT 59.877 66.667 0.00 0.0 0.0 3.85 F
2171 7136 0.100861 GAACTTCTCTCTACGCCGGG 59.899 60.000 2.18 0.0 0.0 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1943 6908 0.306533 CGTCATAAAATTCCGGGGCG 59.693 55.0 0.00 0.0 0.00 6.13 R
2528 7497 0.691078 AGAAGGCCGCCATTCTAGGA 60.691 55.0 13.15 0.0 34.04 2.94 R
3656 8914 0.037882 ATATCAGCGATGGAGCCACG 60.038 55.0 0.00 0.0 38.01 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
347 361 9.043548 AGTAAAGTGTTAGTACCATAGGTTGAT 57.956 33.333 0.00 0.00 37.09 2.57
423 437 1.674817 CGTATTGGTGAGGTGGTGTCC 60.675 57.143 0.00 0.00 0.00 4.02
457 471 5.774690 AGAGATGTATTTCAGCCCACAAAAA 59.225 36.000 0.00 0.00 32.20 1.94
465 479 4.853924 TCAGCCCACAAAAAGATTTCTC 57.146 40.909 0.00 0.00 0.00 2.87
544 577 8.403236 GGTTCTGGTAAATTTACTTATTCGCAT 58.597 33.333 23.89 0.00 34.16 4.73
566 2720 7.096189 CGCATCTGTAAACCTATGTATGTGTAC 60.096 40.741 0.00 0.00 0.00 2.90
581 2735 4.456280 TGTGTACCATTACTCTGCTCTG 57.544 45.455 0.00 0.00 0.00 3.35
826 2983 2.713154 GAGTCTCGCTCTCCGCTC 59.287 66.667 0.00 0.00 40.98 5.03
960 5913 1.138266 GCCTACTTATTCGTGCTCCCA 59.862 52.381 0.00 0.00 0.00 4.37
969 5922 4.416738 GTGCTCCCAGTCCCTGCC 62.417 72.222 0.00 0.00 0.00 4.85
983 5936 1.079819 CTGCCACTACCACACCTCG 60.080 63.158 0.00 0.00 0.00 4.63
991 5944 4.436998 CCACACCTCGACCCGCTC 62.437 72.222 0.00 0.00 0.00 5.03
1114 6073 2.122954 GGAGGTGGAGGTGGAGGT 59.877 66.667 0.00 0.00 0.00 3.85
1117 6076 2.203938 GGTGGAGGTGGAGGTGGA 60.204 66.667 0.00 0.00 0.00 4.02
1295 6254 2.144730 CTATACTCCTACTCGCACGCT 58.855 52.381 0.00 0.00 0.00 5.07
1697 6662 2.636412 CGCCGAGGACTTGGAGTCA 61.636 63.158 9.83 0.00 46.79 3.41
2153 7118 2.577059 GGCGAGACATTCACGGGA 59.423 61.111 0.00 0.00 31.23 5.14
2171 7136 0.100861 GAACTTCTCTCTACGCCGGG 59.899 60.000 2.18 0.00 0.00 5.73
2228 7193 1.668101 GAGGAGACGTGGGCTCGAAT 61.668 60.000 0.00 0.00 33.19 3.34
2498 7463 3.245315 GCGACGATCGTGTTCCGG 61.245 66.667 28.12 8.42 42.81 5.14
2852 7821 2.747686 GGTGACATGTCCACCGGT 59.252 61.111 22.85 0.00 43.80 5.28
2856 7825 0.250124 TGACATGTCCACCGGTGAAC 60.250 55.000 36.07 27.72 0.00 3.18
3386 8644 1.432251 CGTCGGGCAGGTACTACAG 59.568 63.158 0.00 0.00 36.02 2.74
3387 8645 1.310933 CGTCGGGCAGGTACTACAGT 61.311 60.000 0.00 0.00 36.02 3.55
3389 8647 1.153628 CGGGCAGGTACTACAGTGC 60.154 63.158 0.00 4.78 36.02 4.40
3390 8648 1.884075 CGGGCAGGTACTACAGTGCA 61.884 60.000 12.51 0.00 36.02 4.57
3391 8649 0.541863 GGGCAGGTACTACAGTGCAT 59.458 55.000 12.51 0.00 36.02 3.96
3392 8650 1.065418 GGGCAGGTACTACAGTGCATT 60.065 52.381 12.51 0.00 36.02 3.56
3393 8651 2.169769 GGGCAGGTACTACAGTGCATTA 59.830 50.000 12.51 0.00 36.02 1.90
3394 8652 3.181454 GGGCAGGTACTACAGTGCATTAT 60.181 47.826 12.51 0.00 36.02 1.28
3395 8653 3.809832 GGCAGGTACTACAGTGCATTATG 59.190 47.826 12.51 0.00 36.02 1.90
3396 8654 3.248602 GCAGGTACTACAGTGCATTATGC 59.751 47.826 10.65 10.65 40.36 3.14
3397 8655 4.441792 CAGGTACTACAGTGCATTATGCA 58.558 43.478 16.57 16.57 46.23 3.96
3412 8670 7.432543 GCATTATGCATCGATGTTTATCATG 57.567 36.000 25.47 21.16 44.26 3.07
3413 8671 7.025365 GCATTATGCATCGATGTTTATCATGT 58.975 34.615 25.47 10.73 44.26 3.21
3414 8672 8.177013 GCATTATGCATCGATGTTTATCATGTA 58.823 33.333 25.47 12.56 44.26 2.29
3417 8675 7.677454 ATGCATCGATGTTTATCATGTATGT 57.323 32.000 25.47 0.00 36.83 2.29
3418 8676 8.776376 ATGCATCGATGTTTATCATGTATGTA 57.224 30.769 25.47 0.00 36.83 2.29
3419 8677 8.776376 TGCATCGATGTTTATCATGTATGTAT 57.224 30.769 25.47 0.00 36.83 2.29
3420 8678 8.872845 TGCATCGATGTTTATCATGTATGTATC 58.127 33.333 25.47 3.94 36.83 2.24
3421 8679 9.091784 GCATCGATGTTTATCATGTATGTATCT 57.908 33.333 25.47 0.00 36.83 1.98
3445 8703 9.691362 TCTATGGAAAATAACTTTTGCTTCAAC 57.309 29.630 4.40 0.00 41.66 3.18
3446 8704 7.728847 ATGGAAAATAACTTTTGCTTCAACC 57.271 32.000 4.40 0.00 41.66 3.77
3447 8705 6.644347 TGGAAAATAACTTTTGCTTCAACCA 58.356 32.000 4.40 0.00 41.66 3.67
3448 8706 7.278875 TGGAAAATAACTTTTGCTTCAACCAT 58.721 30.769 4.40 0.00 41.66 3.55
3449 8707 7.772757 TGGAAAATAACTTTTGCTTCAACCATT 59.227 29.630 4.40 0.00 41.66 3.16
3450 8708 9.267084 GGAAAATAACTTTTGCTTCAACCATTA 57.733 29.630 0.00 0.00 39.01 1.90
3452 8710 9.830975 AAAATAACTTTTGCTTCAACCATTACT 57.169 25.926 0.00 0.00 33.33 2.24
3453 8711 9.476202 AAATAACTTTTGCTTCAACCATTACTC 57.524 29.630 0.00 0.00 0.00 2.59
3454 8712 5.108385 ACTTTTGCTTCAACCATTACTCG 57.892 39.130 0.00 0.00 0.00 4.18
3455 8713 3.552604 TTTGCTTCAACCATTACTCGC 57.447 42.857 0.00 0.00 0.00 5.03
3456 8714 2.472695 TGCTTCAACCATTACTCGCT 57.527 45.000 0.00 0.00 0.00 4.93
3457 8715 2.778299 TGCTTCAACCATTACTCGCTT 58.222 42.857 0.00 0.00 0.00 4.68
3458 8716 2.483877 TGCTTCAACCATTACTCGCTTG 59.516 45.455 0.00 0.00 0.00 4.01
3459 8717 2.729156 GCTTCAACCATTACTCGCTTGC 60.729 50.000 0.00 0.00 0.00 4.01
3460 8718 1.075542 TCAACCATTACTCGCTTGCG 58.924 50.000 8.87 8.87 0.00 4.85
3461 8719 0.521242 CAACCATTACTCGCTTGCGC 60.521 55.000 10.38 0.00 0.00 6.09
3462 8720 0.673644 AACCATTACTCGCTTGCGCT 60.674 50.000 9.73 0.46 0.00 5.92
3463 8721 0.673644 ACCATTACTCGCTTGCGCTT 60.674 50.000 9.73 2.01 0.00 4.68
3464 8722 0.447801 CCATTACTCGCTTGCGCTTT 59.552 50.000 9.73 0.00 0.00 3.51
3465 8723 1.135689 CCATTACTCGCTTGCGCTTTT 60.136 47.619 9.73 0.00 0.00 2.27
3466 8724 2.584791 CATTACTCGCTTGCGCTTTTT 58.415 42.857 9.73 0.00 0.00 1.94
3490 8748 8.902540 TTTTATGGTAATACGCATCTCATTCT 57.097 30.769 0.00 0.00 0.00 2.40
3491 8749 9.990360 TTTTATGGTAATACGCATCTCATTCTA 57.010 29.630 0.00 0.00 0.00 2.10
3503 8761 9.295214 ACGCATCTCATTCTATTATAAAGATCG 57.705 33.333 0.00 1.65 0.00 3.69
3504 8762 9.508567 CGCATCTCATTCTATTATAAAGATCGA 57.491 33.333 0.00 0.00 0.00 3.59
3526 8784 8.570096 TCGAAGTATAAATCACATAAAGACCG 57.430 34.615 0.00 0.00 0.00 4.79
3527 8785 8.407832 TCGAAGTATAAATCACATAAAGACCGA 58.592 33.333 0.00 0.00 0.00 4.69
3528 8786 8.477709 CGAAGTATAAATCACATAAAGACCGAC 58.522 37.037 0.00 0.00 0.00 4.79
3529 8787 9.309516 GAAGTATAAATCACATAAAGACCGACA 57.690 33.333 0.00 0.00 0.00 4.35
3530 8788 9.832445 AAGTATAAATCACATAAAGACCGACAT 57.168 29.630 0.00 0.00 0.00 3.06
3531 8789 9.261180 AGTATAAATCACATAAAGACCGACATG 57.739 33.333 0.00 0.00 0.00 3.21
3532 8790 9.256477 GTATAAATCACATAAAGACCGACATGA 57.744 33.333 0.00 0.00 0.00 3.07
3533 8791 6.422776 AAATCACATAAAGACCGACATGAC 57.577 37.500 0.00 0.00 0.00 3.06
3534 8792 4.529109 TCACATAAAGACCGACATGACA 57.471 40.909 0.00 0.00 0.00 3.58
3535 8793 4.888917 TCACATAAAGACCGACATGACAA 58.111 39.130 0.00 0.00 0.00 3.18
3536 8794 5.301555 TCACATAAAGACCGACATGACAAA 58.698 37.500 0.00 0.00 0.00 2.83
3537 8795 5.760743 TCACATAAAGACCGACATGACAAAA 59.239 36.000 0.00 0.00 0.00 2.44
3538 8796 6.261158 TCACATAAAGACCGACATGACAAAAA 59.739 34.615 0.00 0.00 0.00 1.94
3539 8797 7.040755 TCACATAAAGACCGACATGACAAAAAT 60.041 33.333 0.00 0.00 0.00 1.82
3540 8798 8.233868 CACATAAAGACCGACATGACAAAAATA 58.766 33.333 0.00 0.00 0.00 1.40
3541 8799 8.788806 ACATAAAGACCGACATGACAAAAATAA 58.211 29.630 0.00 0.00 0.00 1.40
3542 8800 9.619316 CATAAAGACCGACATGACAAAAATAAA 57.381 29.630 0.00 0.00 0.00 1.40
3544 8802 8.934507 AAAGACCGACATGACAAAAATAAAAA 57.065 26.923 0.00 0.00 0.00 1.94
3545 8803 8.574196 AAGACCGACATGACAAAAATAAAAAG 57.426 30.769 0.00 0.00 0.00 2.27
3546 8804 7.936584 AGACCGACATGACAAAAATAAAAAGA 58.063 30.769 0.00 0.00 0.00 2.52
3547 8805 7.860872 AGACCGACATGACAAAAATAAAAAGAC 59.139 33.333 0.00 0.00 0.00 3.01
3548 8806 7.484975 ACCGACATGACAAAAATAAAAAGACA 58.515 30.769 0.00 0.00 0.00 3.41
3549 8807 7.647715 ACCGACATGACAAAAATAAAAAGACAG 59.352 33.333 0.00 0.00 0.00 3.51
3550 8808 7.358352 CCGACATGACAAAAATAAAAAGACAGC 60.358 37.037 0.00 0.00 0.00 4.40
3551 8809 7.167302 CGACATGACAAAAATAAAAAGACAGCA 59.833 33.333 0.00 0.00 0.00 4.41
3552 8810 8.715191 ACATGACAAAAATAAAAAGACAGCAA 57.285 26.923 0.00 0.00 0.00 3.91
3553 8811 9.160496 ACATGACAAAAATAAAAAGACAGCAAA 57.840 25.926 0.00 0.00 0.00 3.68
3554 8812 9.985318 CATGACAAAAATAAAAAGACAGCAAAA 57.015 25.926 0.00 0.00 0.00 2.44
3555 8813 9.986833 ATGACAAAAATAAAAAGACAGCAAAAC 57.013 25.926 0.00 0.00 0.00 2.43
3556 8814 8.993121 TGACAAAAATAAAAAGACAGCAAAACA 58.007 25.926 0.00 0.00 0.00 2.83
3557 8815 9.986833 GACAAAAATAAAAAGACAGCAAAACAT 57.013 25.926 0.00 0.00 0.00 2.71
3558 8816 9.986833 ACAAAAATAAAAAGACAGCAAAACATC 57.013 25.926 0.00 0.00 0.00 3.06
3561 8819 9.822185 AAAATAAAAAGACAGCAAAACATCTCT 57.178 25.926 0.00 0.00 0.00 3.10
3562 8820 8.807667 AATAAAAAGACAGCAAAACATCTCTG 57.192 30.769 0.00 0.00 0.00 3.35
3563 8821 6.455360 AAAAAGACAGCAAAACATCTCTGA 57.545 33.333 0.00 0.00 0.00 3.27
3564 8822 5.686159 AAAGACAGCAAAACATCTCTGAG 57.314 39.130 0.00 0.00 0.00 3.35
3565 8823 3.072944 AGACAGCAAAACATCTCTGAGC 58.927 45.455 0.00 0.00 0.00 4.26
3566 8824 3.072944 GACAGCAAAACATCTCTGAGCT 58.927 45.455 0.00 0.00 0.00 4.09
3567 8825 3.484407 ACAGCAAAACATCTCTGAGCTT 58.516 40.909 0.00 0.00 0.00 3.74
3568 8826 4.645535 ACAGCAAAACATCTCTGAGCTTA 58.354 39.130 0.00 0.00 0.00 3.09
3569 8827 5.065914 ACAGCAAAACATCTCTGAGCTTAA 58.934 37.500 0.00 0.00 0.00 1.85
3570 8828 5.180868 ACAGCAAAACATCTCTGAGCTTAAG 59.819 40.000 0.00 0.00 0.00 1.85
3571 8829 5.410746 CAGCAAAACATCTCTGAGCTTAAGA 59.589 40.000 6.67 0.00 0.00 2.10
3572 8830 5.411053 AGCAAAACATCTCTGAGCTTAAGAC 59.589 40.000 6.67 0.00 0.00 3.01
3573 8831 5.391416 GCAAAACATCTCTGAGCTTAAGACC 60.391 44.000 6.67 0.00 0.00 3.85
3574 8832 5.489792 AAACATCTCTGAGCTTAAGACCA 57.510 39.130 6.67 1.89 0.00 4.02
3575 8833 5.489792 AACATCTCTGAGCTTAAGACCAA 57.510 39.130 6.67 0.00 0.00 3.67
3576 8834 5.489792 ACATCTCTGAGCTTAAGACCAAA 57.510 39.130 6.67 0.00 0.00 3.28
3577 8835 5.241662 ACATCTCTGAGCTTAAGACCAAAC 58.758 41.667 6.67 0.00 0.00 2.93
3578 8836 4.273148 TCTCTGAGCTTAAGACCAAACC 57.727 45.455 6.67 0.00 0.00 3.27
3579 8837 3.008049 TCTCTGAGCTTAAGACCAAACCC 59.992 47.826 6.67 0.00 0.00 4.11
3580 8838 2.039879 TCTGAGCTTAAGACCAAACCCC 59.960 50.000 6.67 0.00 0.00 4.95
3581 8839 1.271163 TGAGCTTAAGACCAAACCCCG 60.271 52.381 6.67 0.00 0.00 5.73
3582 8840 0.769247 AGCTTAAGACCAAACCCCGT 59.231 50.000 6.67 0.00 0.00 5.28
3583 8841 1.162698 GCTTAAGACCAAACCCCGTC 58.837 55.000 6.67 0.00 0.00 4.79
3584 8842 1.543871 GCTTAAGACCAAACCCCGTCA 60.544 52.381 6.67 0.00 0.00 4.35
3585 8843 2.148768 CTTAAGACCAAACCCCGTCAC 58.851 52.381 0.00 0.00 0.00 3.67
3586 8844 0.397564 TAAGACCAAACCCCGTCACC 59.602 55.000 0.00 0.00 0.00 4.02
3587 8845 1.350310 AAGACCAAACCCCGTCACCT 61.350 55.000 0.00 0.00 0.00 4.00
3588 8846 1.599797 GACCAAACCCCGTCACCTG 60.600 63.158 0.00 0.00 0.00 4.00
3589 8847 2.333701 GACCAAACCCCGTCACCTGT 62.334 60.000 0.00 0.00 0.00 4.00
3590 8848 1.599797 CCAAACCCCGTCACCTGTC 60.600 63.158 0.00 0.00 0.00 3.51
3591 8849 1.450211 CAAACCCCGTCACCTGTCT 59.550 57.895 0.00 0.00 0.00 3.41
3592 8850 0.179029 CAAACCCCGTCACCTGTCTT 60.179 55.000 0.00 0.00 0.00 3.01
3593 8851 0.108019 AAACCCCGTCACCTGTCTTC 59.892 55.000 0.00 0.00 0.00 2.87
3594 8852 2.095978 AACCCCGTCACCTGTCTTCG 62.096 60.000 0.00 0.00 0.00 3.79
3595 8853 2.261671 CCCGTCACCTGTCTTCGG 59.738 66.667 0.00 0.00 40.72 4.30
3596 8854 2.432628 CCGTCACCTGTCTTCGGC 60.433 66.667 0.00 0.00 35.01 5.54
3597 8855 2.338620 CGTCACCTGTCTTCGGCA 59.661 61.111 0.00 0.00 0.00 5.69
3598 8856 2.022129 CGTCACCTGTCTTCGGCAC 61.022 63.158 0.00 0.00 0.00 5.01
3599 8857 1.668151 GTCACCTGTCTTCGGCACC 60.668 63.158 0.00 0.00 0.00 5.01
3600 8858 2.137528 TCACCTGTCTTCGGCACCA 61.138 57.895 0.00 0.00 0.00 4.17
3601 8859 1.961277 CACCTGTCTTCGGCACCAC 60.961 63.158 0.00 0.00 0.00 4.16
3602 8860 2.358737 CCTGTCTTCGGCACCACC 60.359 66.667 0.00 0.00 0.00 4.61
3603 8861 2.425592 CTGTCTTCGGCACCACCA 59.574 61.111 0.00 0.00 39.03 4.17
3604 8862 1.961277 CTGTCTTCGGCACCACCAC 60.961 63.158 0.00 0.00 39.03 4.16
3605 8863 2.110213 GTCTTCGGCACCACCACA 59.890 61.111 0.00 0.00 39.03 4.17
3606 8864 1.961277 GTCTTCGGCACCACCACAG 60.961 63.158 0.00 0.00 39.03 3.66
3607 8865 3.357079 CTTCGGCACCACCACAGC 61.357 66.667 0.00 0.00 39.03 4.40
3608 8866 4.182433 TTCGGCACCACCACAGCA 62.182 61.111 0.00 0.00 39.03 4.41
3609 8867 4.624364 TCGGCACCACCACAGCAG 62.624 66.667 0.00 0.00 39.03 4.24
3613 8871 2.282674 CACCACCACAGCAGCCAT 60.283 61.111 0.00 0.00 0.00 4.40
3614 8872 2.034687 ACCACCACAGCAGCCATC 59.965 61.111 0.00 0.00 0.00 3.51
3615 8873 2.034532 CCACCACAGCAGCCATCA 59.965 61.111 0.00 0.00 0.00 3.07
3616 8874 1.604308 CCACCACAGCAGCCATCAA 60.604 57.895 0.00 0.00 0.00 2.57
3617 8875 1.180456 CCACCACAGCAGCCATCAAA 61.180 55.000 0.00 0.00 0.00 2.69
3618 8876 0.242825 CACCACAGCAGCCATCAAAG 59.757 55.000 0.00 0.00 0.00 2.77
3619 8877 0.111061 ACCACAGCAGCCATCAAAGA 59.889 50.000 0.00 0.00 0.00 2.52
3620 8878 1.250328 CCACAGCAGCCATCAAAGAA 58.750 50.000 0.00 0.00 0.00 2.52
3621 8879 1.614903 CCACAGCAGCCATCAAAGAAA 59.385 47.619 0.00 0.00 0.00 2.52
3622 8880 2.036217 CCACAGCAGCCATCAAAGAAAA 59.964 45.455 0.00 0.00 0.00 2.29
3623 8881 3.493002 CCACAGCAGCCATCAAAGAAAAA 60.493 43.478 0.00 0.00 0.00 1.94
3645 8903 6.956202 AAAAATGATGGATCATCTCCTCAC 57.044 37.500 2.59 0.00 46.22 3.51
3646 8904 4.637387 AATGATGGATCATCTCCTCACC 57.363 45.455 2.59 0.00 46.22 4.02
3647 8905 3.341318 TGATGGATCATCTCCTCACCT 57.659 47.619 9.00 0.00 45.21 4.00
3648 8906 2.970640 TGATGGATCATCTCCTCACCTG 59.029 50.000 9.00 0.00 45.21 4.00
3649 8907 2.854736 TGGATCATCTCCTCACCTGA 57.145 50.000 0.00 0.00 45.21 3.86
3650 8908 3.120468 TGGATCATCTCCTCACCTGAA 57.880 47.619 0.00 0.00 45.21 3.02
3651 8909 2.768527 TGGATCATCTCCTCACCTGAAC 59.231 50.000 0.00 0.00 45.21 3.18
3652 8910 3.037549 GGATCATCTCCTCACCTGAACT 58.962 50.000 0.00 0.00 41.29 3.01
3653 8911 3.069443 GGATCATCTCCTCACCTGAACTC 59.931 52.174 0.00 0.00 41.29 3.01
3654 8912 3.175438 TCATCTCCTCACCTGAACTCA 57.825 47.619 0.00 0.00 0.00 3.41
3655 8913 3.510459 TCATCTCCTCACCTGAACTCAA 58.490 45.455 0.00 0.00 0.00 3.02
3656 8914 3.259374 TCATCTCCTCACCTGAACTCAAC 59.741 47.826 0.00 0.00 0.00 3.18
3657 8915 1.613925 TCTCCTCACCTGAACTCAACG 59.386 52.381 0.00 0.00 0.00 4.10
3658 8916 1.341531 CTCCTCACCTGAACTCAACGT 59.658 52.381 0.00 0.00 0.00 3.99
3659 8917 1.068588 TCCTCACCTGAACTCAACGTG 59.931 52.381 0.00 1.79 0.00 4.49
3660 8918 1.502231 CTCACCTGAACTCAACGTGG 58.498 55.000 0.00 0.00 31.06 4.94
3661 8919 0.531974 TCACCTGAACTCAACGTGGC 60.532 55.000 0.00 0.00 31.06 5.01
3662 8920 0.532862 CACCTGAACTCAACGTGGCT 60.533 55.000 0.00 0.00 0.00 4.75
3663 8921 0.249911 ACCTGAACTCAACGTGGCTC 60.250 55.000 0.00 0.00 0.00 4.70
3664 8922 0.951040 CCTGAACTCAACGTGGCTCC 60.951 60.000 0.00 0.00 0.00 4.70
3665 8923 0.249868 CTGAACTCAACGTGGCTCCA 60.250 55.000 0.00 0.00 0.00 3.86
3666 8924 0.396435 TGAACTCAACGTGGCTCCAT 59.604 50.000 0.00 0.00 0.00 3.41
3667 8925 1.079503 GAACTCAACGTGGCTCCATC 58.920 55.000 0.00 0.00 0.00 3.51
3668 8926 0.670546 AACTCAACGTGGCTCCATCG 60.671 55.000 0.00 8.56 0.00 3.84
3669 8927 2.434185 TCAACGTGGCTCCATCGC 60.434 61.111 0.00 0.00 0.00 4.58
3670 8928 2.434884 CAACGTGGCTCCATCGCT 60.435 61.111 0.00 0.00 0.00 4.93
3671 8929 2.434884 AACGTGGCTCCATCGCTG 60.435 61.111 0.00 0.00 0.00 5.18
3672 8930 2.942796 AACGTGGCTCCATCGCTGA 61.943 57.895 0.00 0.00 0.00 4.26
3673 8931 2.107750 CGTGGCTCCATCGCTGAT 59.892 61.111 0.00 0.00 0.00 2.90
3674 8932 1.363807 CGTGGCTCCATCGCTGATA 59.636 57.895 0.00 0.00 0.00 2.15
3675 8933 0.037882 CGTGGCTCCATCGCTGATAT 60.038 55.000 0.00 0.00 0.00 1.63
3676 8934 1.436600 GTGGCTCCATCGCTGATATG 58.563 55.000 0.00 0.00 0.00 1.78
3677 8935 0.321034 TGGCTCCATCGCTGATATGC 60.321 55.000 0.00 0.00 0.00 3.14
3678 8936 0.321034 GGCTCCATCGCTGATATGCA 60.321 55.000 0.00 0.00 0.00 3.96
3692 8950 4.069869 TGCAGCTTTGCAGACCTC 57.930 55.556 0.00 0.00 40.23 3.85
3693 8951 1.601759 TGCAGCTTTGCAGACCTCC 60.602 57.895 0.00 0.00 40.23 4.30
3694 8952 1.601759 GCAGCTTTGCAGACCTCCA 60.602 57.895 0.00 0.00 34.41 3.86
3695 8953 1.174712 GCAGCTTTGCAGACCTCCAA 61.175 55.000 0.00 0.00 34.41 3.53
3696 8954 1.321474 CAGCTTTGCAGACCTCCAAA 58.679 50.000 0.00 0.00 0.00 3.28
3697 8955 1.268899 CAGCTTTGCAGACCTCCAAAG 59.731 52.381 8.64 8.64 46.55 2.77
3698 8956 1.133668 AGCTTTGCAGACCTCCAAAGT 60.134 47.619 13.19 0.88 45.91 2.66
3699 8957 1.000938 GCTTTGCAGACCTCCAAAGTG 60.001 52.381 13.19 0.00 45.91 3.16
3700 8958 2.575532 CTTTGCAGACCTCCAAAGTGA 58.424 47.619 5.49 0.00 41.68 3.41
3701 8959 1.967319 TTGCAGACCTCCAAAGTGAC 58.033 50.000 0.00 0.00 0.00 3.67
3702 8960 0.249868 TGCAGACCTCCAAAGTGACG 60.250 55.000 0.00 0.00 0.00 4.35
3703 8961 1.569479 GCAGACCTCCAAAGTGACGC 61.569 60.000 0.00 0.00 0.00 5.19
3704 8962 0.249868 CAGACCTCCAAAGTGACGCA 60.250 55.000 0.00 0.00 0.00 5.24
3705 8963 0.249911 AGACCTCCAAAGTGACGCAC 60.250 55.000 2.28 2.28 34.10 5.34
3706 8964 1.227853 ACCTCCAAAGTGACGCACC 60.228 57.895 6.39 0.00 34.49 5.01
3707 8965 1.227823 CCTCCAAAGTGACGCACCA 60.228 57.895 6.39 0.00 34.49 4.17
3708 8966 0.817634 CCTCCAAAGTGACGCACCAA 60.818 55.000 6.39 0.00 34.49 3.67
3709 8967 1.021202 CTCCAAAGTGACGCACCAAA 58.979 50.000 6.39 0.00 34.49 3.28
3710 8968 1.403679 CTCCAAAGTGACGCACCAAAA 59.596 47.619 6.39 0.00 34.49 2.44
3711 8969 1.403679 TCCAAAGTGACGCACCAAAAG 59.596 47.619 6.39 0.00 34.49 2.27
3712 8970 1.134175 CCAAAGTGACGCACCAAAAGT 59.866 47.619 6.39 0.00 34.49 2.66
3723 8981 2.531522 ACCAAAAGTGAAGCCATTGC 57.468 45.000 0.00 0.00 37.95 3.56
3724 8982 1.070601 ACCAAAAGTGAAGCCATTGCC 59.929 47.619 0.00 0.00 38.69 4.52
3725 8983 1.070445 CCAAAAGTGAAGCCATTGCCA 59.930 47.619 0.00 0.00 38.69 4.92
3726 8984 2.289819 CCAAAAGTGAAGCCATTGCCAT 60.290 45.455 0.00 0.00 38.69 4.40
3727 8985 3.404899 CAAAAGTGAAGCCATTGCCATT 58.595 40.909 0.00 0.00 38.69 3.16
3728 8986 2.754946 AAGTGAAGCCATTGCCATTG 57.245 45.000 0.00 0.00 38.69 2.82
3729 8987 1.927487 AGTGAAGCCATTGCCATTGA 58.073 45.000 0.00 0.00 38.69 2.57
3730 8988 2.250031 AGTGAAGCCATTGCCATTGAA 58.750 42.857 0.00 0.00 38.69 2.69
3731 8989 2.028748 AGTGAAGCCATTGCCATTGAAC 60.029 45.455 0.00 0.00 38.69 3.18
3732 8990 1.067706 TGAAGCCATTGCCATTGAACG 60.068 47.619 0.00 0.00 38.69 3.95
3733 8991 1.202114 GAAGCCATTGCCATTGAACGA 59.798 47.619 0.00 0.00 38.69 3.85
3734 8992 1.255882 AGCCATTGCCATTGAACGAA 58.744 45.000 0.00 0.00 38.69 3.85
3735 8993 1.203052 AGCCATTGCCATTGAACGAAG 59.797 47.619 0.00 0.00 38.69 3.79
3736 8994 1.202114 GCCATTGCCATTGAACGAAGA 59.798 47.619 0.00 0.00 0.00 2.87
3737 8995 2.352617 GCCATTGCCATTGAACGAAGAA 60.353 45.455 0.00 0.00 0.00 2.52
3738 8996 3.860378 GCCATTGCCATTGAACGAAGAAA 60.860 43.478 0.00 0.00 0.00 2.52
3739 8997 4.305769 CCATTGCCATTGAACGAAGAAAA 58.694 39.130 0.00 0.00 0.00 2.29
3740 8998 4.749099 CCATTGCCATTGAACGAAGAAAAA 59.251 37.500 0.00 0.00 0.00 1.94
3760 9018 4.492791 AAAAAGAACGAATAACACCGGG 57.507 40.909 6.32 0.00 0.00 5.73
3761 9019 2.103537 AAGAACGAATAACACCGGGG 57.896 50.000 0.00 0.00 0.00 5.73
3762 9020 0.392060 AGAACGAATAACACCGGGGC 60.392 55.000 1.73 0.00 0.00 5.80
3763 9021 0.674269 GAACGAATAACACCGGGGCA 60.674 55.000 1.73 0.00 0.00 5.36
3764 9022 0.250814 AACGAATAACACCGGGGCAA 60.251 50.000 1.73 0.00 0.00 4.52
3765 9023 0.956902 ACGAATAACACCGGGGCAAC 60.957 55.000 1.73 0.00 0.00 4.17
3766 9024 0.956410 CGAATAACACCGGGGCAACA 60.956 55.000 1.73 0.00 39.74 3.33
3767 9025 0.524414 GAATAACACCGGGGCAACAC 59.476 55.000 1.73 0.00 39.74 3.32
3768 9026 0.896479 AATAACACCGGGGCAACACC 60.896 55.000 1.73 0.00 35.43 4.16
3804 9062 6.375736 CCTGTTAAGGCATATCTCTCTCGATA 59.624 42.308 0.00 0.00 36.56 2.92
3998 9260 1.212250 AGGGGGTCCGCTTTGGTAAT 61.212 55.000 5.82 0.00 39.52 1.89
4155 9418 2.508436 TGTGGTTCTCAGCCGCAA 59.492 55.556 0.00 0.00 42.74 4.85
4160 9423 0.392461 GGTTCTCAGCCGCAATACCA 60.392 55.000 0.00 0.00 0.00 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
327 341 6.412214 ACCAATCAACCTATGGTACTAACAC 58.588 40.000 0.00 0.00 45.37 3.32
347 361 0.250858 CATGTGTGCTCCCAGACCAA 60.251 55.000 0.00 0.00 34.53 3.67
423 437 8.178964 GGCTGAAATACATCTCTATACTAGTCG 58.821 40.741 0.00 0.00 0.00 4.18
457 471 9.877178 AACATCGACTAATAAACTGAGAAATCT 57.123 29.630 0.00 0.00 0.00 2.40
465 479 7.277760 TCCATGTCAACATCGACTAATAAACTG 59.722 37.037 0.00 0.00 36.82 3.16
544 577 7.721409 TGGTACACATACATAGGTTTACAGA 57.279 36.000 0.00 0.00 32.40 3.41
566 2720 3.311871 GTGCATTCAGAGCAGAGTAATGG 59.688 47.826 0.00 0.00 43.63 3.16
620 2774 4.036262 TGTGTGTCCTTAAACTGATTGCAC 59.964 41.667 0.00 0.00 0.00 4.57
670 2824 1.401539 GCACGAAGCCTCCATTTTGTC 60.402 52.381 0.00 0.00 37.23 3.18
676 2830 1.741770 GAACGCACGAAGCCTCCAT 60.742 57.895 0.00 0.00 41.38 3.41
826 2983 3.548014 CGCCGAAGTATTTTATTGCCAGG 60.548 47.826 0.00 0.00 0.00 4.45
863 5786 5.571784 TGAATGATTTTGATCTCTGCACC 57.428 39.130 0.00 0.00 0.00 5.01
960 5913 1.152118 TGTGGTAGTGGCAGGGACT 60.152 57.895 0.00 0.00 43.88 3.85
969 5922 1.590147 GGGTCGAGGTGTGGTAGTG 59.410 63.158 0.00 0.00 0.00 2.74
991 5944 2.380410 GCAAGAGGTGTACGCGGTG 61.380 63.158 12.47 0.00 0.00 4.94
1277 6236 0.663688 CAGCGTGCGAGTAGGAGTAT 59.336 55.000 0.00 0.00 0.00 2.12
1697 6662 4.657824 CCGTTGGTGTCGAGCGGT 62.658 66.667 0.00 0.00 37.87 5.68
1907 6872 3.547746 GAGGGAGACAGAGATAACGTCT 58.452 50.000 0.00 0.00 42.58 4.18
1943 6908 0.306533 CGTCATAAAATTCCGGGGCG 59.693 55.000 0.00 0.00 0.00 6.13
2144 7109 3.128938 CGTAGAGAGAAGTTCCCGTGAAT 59.871 47.826 0.00 0.00 31.98 2.57
2153 7118 1.321074 CCCCGGCGTAGAGAGAAGTT 61.321 60.000 6.01 0.00 0.00 2.66
2183 7148 1.065491 ACCAATGGTATCTTGCTCGCA 60.065 47.619 1.52 0.00 32.11 5.10
2188 7153 3.131396 CCGTAGACCAATGGTATCTTGC 58.869 50.000 4.23 0.00 35.25 4.01
2228 7193 0.884704 GCTTCCCTTCTTCGCACACA 60.885 55.000 0.00 0.00 0.00 3.72
2528 7497 0.691078 AGAAGGCCGCCATTCTAGGA 60.691 55.000 13.15 0.00 34.04 2.94
2579 7548 2.417719 GTCACGTCTGGCTTGAAGATT 58.582 47.619 0.00 0.00 0.00 2.40
2852 7821 2.901813 AACGGTGTGGACGGTTCA 59.098 55.556 0.00 0.00 40.56 3.18
2888 7857 4.517815 GCGCGGTTGGGGTCGATA 62.518 66.667 8.83 0.00 0.00 2.92
2981 7950 4.681978 AACACGGCGACCTGCTCC 62.682 66.667 16.62 0.00 45.43 4.70
3386 8644 7.007995 CATGATAAACATCGATGCATAATGCAC 59.992 37.037 25.11 8.51 46.45 4.57
3387 8645 7.148355 ATGATAAACATCGATGCATAATGCA 57.852 32.000 25.11 14.33 46.49 3.96
3391 8649 9.218440 ACATACATGATAAACATCGATGCATAA 57.782 29.630 25.11 9.68 37.07 1.90
3392 8650 8.776376 ACATACATGATAAACATCGATGCATA 57.224 30.769 25.11 17.62 37.07 3.14
3393 8651 7.677454 ACATACATGATAAACATCGATGCAT 57.323 32.000 25.11 16.10 37.07 3.96
3394 8652 8.776376 ATACATACATGATAAACATCGATGCA 57.224 30.769 25.11 14.52 37.07 3.96
3395 8653 9.091784 AGATACATACATGATAAACATCGATGC 57.908 33.333 25.11 9.06 37.07 3.91
3419 8677 9.691362 GTTGAAGCAAAAGTTATTTTCCATAGA 57.309 29.630 0.00 0.00 36.47 1.98
3420 8678 8.925700 GGTTGAAGCAAAAGTTATTTTCCATAG 58.074 33.333 0.00 0.00 36.47 2.23
3421 8679 8.424918 TGGTTGAAGCAAAAGTTATTTTCCATA 58.575 29.630 0.00 0.00 36.47 2.74
3422 8680 7.278875 TGGTTGAAGCAAAAGTTATTTTCCAT 58.721 30.769 0.00 0.00 36.47 3.41
3423 8681 6.644347 TGGTTGAAGCAAAAGTTATTTTCCA 58.356 32.000 0.00 0.00 36.47 3.53
3424 8682 7.728847 ATGGTTGAAGCAAAAGTTATTTTCC 57.271 32.000 0.00 0.00 36.47 3.13
3426 8684 9.830975 AGTAATGGTTGAAGCAAAAGTTATTTT 57.169 25.926 0.00 0.00 39.22 1.82
3427 8685 9.476202 GAGTAATGGTTGAAGCAAAAGTTATTT 57.524 29.630 0.00 0.00 0.00 1.40
3428 8686 7.807907 CGAGTAATGGTTGAAGCAAAAGTTATT 59.192 33.333 0.00 0.00 0.00 1.40
3429 8687 7.305474 CGAGTAATGGTTGAAGCAAAAGTTAT 58.695 34.615 0.00 0.00 0.00 1.89
3430 8688 6.664515 CGAGTAATGGTTGAAGCAAAAGTTA 58.335 36.000 0.00 0.00 0.00 2.24
3431 8689 5.519722 CGAGTAATGGTTGAAGCAAAAGTT 58.480 37.500 0.00 0.00 0.00 2.66
3432 8690 4.556699 GCGAGTAATGGTTGAAGCAAAAGT 60.557 41.667 0.00 0.00 0.00 2.66
3433 8691 3.914364 GCGAGTAATGGTTGAAGCAAAAG 59.086 43.478 0.00 0.00 0.00 2.27
3434 8692 3.568007 AGCGAGTAATGGTTGAAGCAAAA 59.432 39.130 0.00 0.00 0.00 2.44
3435 8693 3.146066 AGCGAGTAATGGTTGAAGCAAA 58.854 40.909 0.00 0.00 0.00 3.68
3436 8694 2.778299 AGCGAGTAATGGTTGAAGCAA 58.222 42.857 0.00 0.00 0.00 3.91
3437 8695 2.472695 AGCGAGTAATGGTTGAAGCA 57.527 45.000 0.00 0.00 0.00 3.91
3438 8696 2.729156 GCAAGCGAGTAATGGTTGAAGC 60.729 50.000 8.88 0.00 45.19 3.86
3439 8697 2.474526 CGCAAGCGAGTAATGGTTGAAG 60.475 50.000 9.11 0.00 45.19 3.02
3440 8698 1.463056 CGCAAGCGAGTAATGGTTGAA 59.537 47.619 9.11 0.00 45.19 2.69
3441 8699 1.075542 CGCAAGCGAGTAATGGTTGA 58.924 50.000 9.11 0.00 45.19 3.18
3442 8700 3.586039 CGCAAGCGAGTAATGGTTG 57.414 52.632 9.11 0.89 45.16 3.77
3464 8722 9.337396 AGAATGAGATGCGTATTACCATAAAAA 57.663 29.630 0.00 0.00 0.00 1.94
3465 8723 8.902540 AGAATGAGATGCGTATTACCATAAAA 57.097 30.769 0.00 0.00 0.00 1.52
3477 8735 9.295214 CGATCTTTATAATAGAATGAGATGCGT 57.705 33.333 0.00 0.00 0.00 5.24
3478 8736 9.508567 TCGATCTTTATAATAGAATGAGATGCG 57.491 33.333 0.00 3.83 0.00 4.73
3500 8758 9.193133 CGGTCTTTATGTGATTTATACTTCGAT 57.807 33.333 0.00 0.00 0.00 3.59
3501 8759 8.407832 TCGGTCTTTATGTGATTTATACTTCGA 58.592 33.333 0.00 0.00 0.00 3.71
3502 8760 8.477709 GTCGGTCTTTATGTGATTTATACTTCG 58.522 37.037 0.00 0.00 0.00 3.79
3503 8761 9.309516 TGTCGGTCTTTATGTGATTTATACTTC 57.690 33.333 0.00 0.00 0.00 3.01
3504 8762 9.832445 ATGTCGGTCTTTATGTGATTTATACTT 57.168 29.630 0.00 0.00 0.00 2.24
3505 8763 9.261180 CATGTCGGTCTTTATGTGATTTATACT 57.739 33.333 0.00 0.00 0.00 2.12
3506 8764 9.256477 TCATGTCGGTCTTTATGTGATTTATAC 57.744 33.333 0.00 0.00 0.00 1.47
3507 8765 9.256477 GTCATGTCGGTCTTTATGTGATTTATA 57.744 33.333 0.00 0.00 0.00 0.98
3508 8766 7.768582 TGTCATGTCGGTCTTTATGTGATTTAT 59.231 33.333 0.00 0.00 0.00 1.40
3509 8767 7.100409 TGTCATGTCGGTCTTTATGTGATTTA 58.900 34.615 0.00 0.00 0.00 1.40
3510 8768 5.937540 TGTCATGTCGGTCTTTATGTGATTT 59.062 36.000 0.00 0.00 0.00 2.17
3511 8769 5.487433 TGTCATGTCGGTCTTTATGTGATT 58.513 37.500 0.00 0.00 0.00 2.57
3512 8770 5.084818 TGTCATGTCGGTCTTTATGTGAT 57.915 39.130 0.00 0.00 0.00 3.06
3513 8771 4.529109 TGTCATGTCGGTCTTTATGTGA 57.471 40.909 0.00 0.00 0.00 3.58
3514 8772 5.605564 TTTGTCATGTCGGTCTTTATGTG 57.394 39.130 0.00 0.00 0.00 3.21
3515 8773 6.627395 TTTTTGTCATGTCGGTCTTTATGT 57.373 33.333 0.00 0.00 0.00 2.29
3516 8774 9.619316 TTTATTTTTGTCATGTCGGTCTTTATG 57.381 29.630 0.00 0.00 0.00 1.90
3519 8777 8.934507 TTTTTATTTTTGTCATGTCGGTCTTT 57.065 26.923 0.00 0.00 0.00 2.52
3520 8778 8.410141 TCTTTTTATTTTTGTCATGTCGGTCTT 58.590 29.630 0.00 0.00 0.00 3.01
3521 8779 7.860872 GTCTTTTTATTTTTGTCATGTCGGTCT 59.139 33.333 0.00 0.00 0.00 3.85
3522 8780 7.646130 TGTCTTTTTATTTTTGTCATGTCGGTC 59.354 33.333 0.00 0.00 0.00 4.79
3523 8781 7.484975 TGTCTTTTTATTTTTGTCATGTCGGT 58.515 30.769 0.00 0.00 0.00 4.69
3524 8782 7.358352 GCTGTCTTTTTATTTTTGTCATGTCGG 60.358 37.037 0.00 0.00 0.00 4.79
3525 8783 7.167302 TGCTGTCTTTTTATTTTTGTCATGTCG 59.833 33.333 0.00 0.00 0.00 4.35
3526 8784 8.351495 TGCTGTCTTTTTATTTTTGTCATGTC 57.649 30.769 0.00 0.00 0.00 3.06
3527 8785 8.715191 TTGCTGTCTTTTTATTTTTGTCATGT 57.285 26.923 0.00 0.00 0.00 3.21
3528 8786 9.985318 TTTTGCTGTCTTTTTATTTTTGTCATG 57.015 25.926 0.00 0.00 0.00 3.07
3529 8787 9.986833 GTTTTGCTGTCTTTTTATTTTTGTCAT 57.013 25.926 0.00 0.00 0.00 3.06
3530 8788 8.993121 TGTTTTGCTGTCTTTTTATTTTTGTCA 58.007 25.926 0.00 0.00 0.00 3.58
3531 8789 9.986833 ATGTTTTGCTGTCTTTTTATTTTTGTC 57.013 25.926 0.00 0.00 0.00 3.18
3532 8790 9.986833 GATGTTTTGCTGTCTTTTTATTTTTGT 57.013 25.926 0.00 0.00 0.00 2.83
3535 8793 9.822185 AGAGATGTTTTGCTGTCTTTTTATTTT 57.178 25.926 0.00 0.00 0.00 1.82
3536 8794 9.252962 CAGAGATGTTTTGCTGTCTTTTTATTT 57.747 29.630 0.00 0.00 0.00 1.40
3537 8795 8.632679 TCAGAGATGTTTTGCTGTCTTTTTATT 58.367 29.630 0.00 0.00 0.00 1.40
3538 8796 8.169977 TCAGAGATGTTTTGCTGTCTTTTTAT 57.830 30.769 0.00 0.00 0.00 1.40
3539 8797 7.566760 TCAGAGATGTTTTGCTGTCTTTTTA 57.433 32.000 0.00 0.00 0.00 1.52
3540 8798 6.455360 TCAGAGATGTTTTGCTGTCTTTTT 57.545 33.333 0.00 0.00 0.00 1.94
3541 8799 5.506982 GCTCAGAGATGTTTTGCTGTCTTTT 60.507 40.000 0.00 0.00 0.00 2.27
3542 8800 4.023365 GCTCAGAGATGTTTTGCTGTCTTT 60.023 41.667 0.00 0.00 0.00 2.52
3543 8801 3.501445 GCTCAGAGATGTTTTGCTGTCTT 59.499 43.478 0.00 0.00 0.00 3.01
3544 8802 3.072944 GCTCAGAGATGTTTTGCTGTCT 58.927 45.455 0.00 0.00 0.00 3.41
3545 8803 3.072944 AGCTCAGAGATGTTTTGCTGTC 58.927 45.455 0.00 0.00 0.00 3.51
3546 8804 3.137446 AGCTCAGAGATGTTTTGCTGT 57.863 42.857 0.00 0.00 0.00 4.40
3547 8805 5.410746 TCTTAAGCTCAGAGATGTTTTGCTG 59.589 40.000 0.00 0.00 0.00 4.41
3548 8806 5.411053 GTCTTAAGCTCAGAGATGTTTTGCT 59.589 40.000 0.00 0.00 0.00 3.91
3549 8807 5.391416 GGTCTTAAGCTCAGAGATGTTTTGC 60.391 44.000 0.00 0.00 0.00 3.68
3550 8808 5.702670 TGGTCTTAAGCTCAGAGATGTTTTG 59.297 40.000 0.00 0.00 0.00 2.44
3551 8809 5.869579 TGGTCTTAAGCTCAGAGATGTTTT 58.130 37.500 0.00 0.00 0.00 2.43
3552 8810 5.489792 TGGTCTTAAGCTCAGAGATGTTT 57.510 39.130 0.00 0.00 0.00 2.83
3553 8811 5.489792 TTGGTCTTAAGCTCAGAGATGTT 57.510 39.130 0.00 0.00 0.00 2.71
3554 8812 5.241662 GTTTGGTCTTAAGCTCAGAGATGT 58.758 41.667 0.00 0.00 0.00 3.06
3555 8813 4.633565 GGTTTGGTCTTAAGCTCAGAGATG 59.366 45.833 0.00 0.00 0.00 2.90
3556 8814 4.323868 GGGTTTGGTCTTAAGCTCAGAGAT 60.324 45.833 0.00 0.00 0.00 2.75
3557 8815 3.008049 GGGTTTGGTCTTAAGCTCAGAGA 59.992 47.826 0.00 0.00 0.00 3.10
3558 8816 3.339141 GGGTTTGGTCTTAAGCTCAGAG 58.661 50.000 0.00 0.00 0.00 3.35
3559 8817 2.039879 GGGGTTTGGTCTTAAGCTCAGA 59.960 50.000 0.00 0.00 0.00 3.27
3560 8818 2.437413 GGGGTTTGGTCTTAAGCTCAG 58.563 52.381 0.00 0.00 0.00 3.35
3561 8819 1.271163 CGGGGTTTGGTCTTAAGCTCA 60.271 52.381 0.00 0.00 0.00 4.26
3562 8820 1.271217 ACGGGGTTTGGTCTTAAGCTC 60.271 52.381 0.00 0.00 0.00 4.09
3563 8821 0.769247 ACGGGGTTTGGTCTTAAGCT 59.231 50.000 0.00 0.00 0.00 3.74
3564 8822 1.162698 GACGGGGTTTGGTCTTAAGC 58.837 55.000 0.00 0.00 0.00 3.09
3565 8823 2.148768 GTGACGGGGTTTGGTCTTAAG 58.851 52.381 0.00 0.00 34.31 1.85
3566 8824 1.202794 GGTGACGGGGTTTGGTCTTAA 60.203 52.381 0.00 0.00 34.31 1.85
3567 8825 0.397564 GGTGACGGGGTTTGGTCTTA 59.602 55.000 0.00 0.00 34.31 2.10
3568 8826 1.149854 GGTGACGGGGTTTGGTCTT 59.850 57.895 0.00 0.00 34.31 3.01
3569 8827 1.768888 AGGTGACGGGGTTTGGTCT 60.769 57.895 0.00 0.00 34.31 3.85
3570 8828 1.599797 CAGGTGACGGGGTTTGGTC 60.600 63.158 0.00 0.00 0.00 4.02
3571 8829 2.333701 GACAGGTGACGGGGTTTGGT 62.334 60.000 0.00 0.00 0.00 3.67
3572 8830 1.599797 GACAGGTGACGGGGTTTGG 60.600 63.158 0.00 0.00 0.00 3.28
3573 8831 0.179029 AAGACAGGTGACGGGGTTTG 60.179 55.000 0.00 0.00 0.00 2.93
3574 8832 0.108019 GAAGACAGGTGACGGGGTTT 59.892 55.000 0.00 0.00 0.00 3.27
3575 8833 1.752833 GAAGACAGGTGACGGGGTT 59.247 57.895 0.00 0.00 0.00 4.11
3576 8834 2.571216 CGAAGACAGGTGACGGGGT 61.571 63.158 0.00 0.00 0.00 4.95
3577 8835 2.261671 CGAAGACAGGTGACGGGG 59.738 66.667 0.00 0.00 0.00 5.73
3578 8836 2.261671 CCGAAGACAGGTGACGGG 59.738 66.667 0.00 0.00 39.92 5.28
3579 8837 2.432628 GCCGAAGACAGGTGACGG 60.433 66.667 0.00 0.00 45.26 4.79
3580 8838 2.022129 GTGCCGAAGACAGGTGACG 61.022 63.158 0.00 0.00 0.00 4.35
3581 8839 1.668151 GGTGCCGAAGACAGGTGAC 60.668 63.158 0.00 0.00 0.00 3.67
3582 8840 2.137528 TGGTGCCGAAGACAGGTGA 61.138 57.895 0.00 0.00 0.00 4.02
3583 8841 1.961277 GTGGTGCCGAAGACAGGTG 60.961 63.158 0.00 0.00 0.00 4.00
3584 8842 2.426023 GTGGTGCCGAAGACAGGT 59.574 61.111 0.00 0.00 0.00 4.00
3585 8843 2.358737 GGTGGTGCCGAAGACAGG 60.359 66.667 0.00 0.00 0.00 4.00
3586 8844 1.961277 GTGGTGGTGCCGAAGACAG 60.961 63.158 0.00 0.00 41.21 3.51
3587 8845 2.110213 GTGGTGGTGCCGAAGACA 59.890 61.111 0.00 0.00 41.21 3.41
3588 8846 1.961277 CTGTGGTGGTGCCGAAGAC 60.961 63.158 0.00 0.00 41.21 3.01
3589 8847 2.425592 CTGTGGTGGTGCCGAAGA 59.574 61.111 0.00 0.00 41.21 2.87
3590 8848 3.357079 GCTGTGGTGGTGCCGAAG 61.357 66.667 0.00 0.00 41.21 3.79
3591 8849 4.182433 TGCTGTGGTGGTGCCGAA 62.182 61.111 0.00 0.00 41.21 4.30
3592 8850 4.624364 CTGCTGTGGTGGTGCCGA 62.624 66.667 0.00 0.00 41.21 5.54
3596 8854 2.282674 ATGGCTGCTGTGGTGGTG 60.283 61.111 0.00 0.00 0.00 4.17
3597 8855 2.034687 GATGGCTGCTGTGGTGGT 59.965 61.111 0.00 0.00 0.00 4.16
3598 8856 1.180456 TTTGATGGCTGCTGTGGTGG 61.180 55.000 0.00 0.00 0.00 4.61
3599 8857 0.242825 CTTTGATGGCTGCTGTGGTG 59.757 55.000 0.00 0.00 0.00 4.17
3600 8858 0.111061 TCTTTGATGGCTGCTGTGGT 59.889 50.000 0.00 0.00 0.00 4.16
3601 8859 1.250328 TTCTTTGATGGCTGCTGTGG 58.750 50.000 0.00 0.00 0.00 4.17
3602 8860 3.374220 TTTTCTTTGATGGCTGCTGTG 57.626 42.857 0.00 0.00 0.00 3.66
3632 8890 3.703556 TGAGTTCAGGTGAGGAGATGATC 59.296 47.826 0.00 0.00 0.00 2.92
3633 8891 3.717576 TGAGTTCAGGTGAGGAGATGAT 58.282 45.455 0.00 0.00 0.00 2.45
3634 8892 3.175438 TGAGTTCAGGTGAGGAGATGA 57.825 47.619 0.00 0.00 0.00 2.92
3635 8893 3.594134 GTTGAGTTCAGGTGAGGAGATG 58.406 50.000 0.00 0.00 0.00 2.90
3636 8894 2.232452 CGTTGAGTTCAGGTGAGGAGAT 59.768 50.000 0.00 0.00 0.00 2.75
3637 8895 1.613925 CGTTGAGTTCAGGTGAGGAGA 59.386 52.381 0.00 0.00 0.00 3.71
3638 8896 1.341531 ACGTTGAGTTCAGGTGAGGAG 59.658 52.381 0.00 0.00 0.00 3.69
3639 8897 1.068588 CACGTTGAGTTCAGGTGAGGA 59.931 52.381 8.75 0.00 35.49 3.71
3640 8898 1.502231 CACGTTGAGTTCAGGTGAGG 58.498 55.000 8.75 0.00 35.49 3.86
3641 8899 1.502231 CCACGTTGAGTTCAGGTGAG 58.498 55.000 13.59 4.44 35.49 3.51
3642 8900 0.531974 GCCACGTTGAGTTCAGGTGA 60.532 55.000 13.59 0.00 35.49 4.02
3643 8901 0.532862 AGCCACGTTGAGTTCAGGTG 60.533 55.000 0.00 7.86 34.20 4.00
3644 8902 0.249911 GAGCCACGTTGAGTTCAGGT 60.250 55.000 0.00 0.00 0.00 4.00
3645 8903 0.951040 GGAGCCACGTTGAGTTCAGG 60.951 60.000 0.00 0.00 0.00 3.86
3646 8904 0.249868 TGGAGCCACGTTGAGTTCAG 60.250 55.000 0.00 0.00 0.00 3.02
3647 8905 0.396435 ATGGAGCCACGTTGAGTTCA 59.604 50.000 0.00 0.00 0.00 3.18
3648 8906 1.079503 GATGGAGCCACGTTGAGTTC 58.920 55.000 0.00 0.00 0.00 3.01
3649 8907 0.670546 CGATGGAGCCACGTTGAGTT 60.671 55.000 0.00 0.00 0.00 3.01
3650 8908 1.079819 CGATGGAGCCACGTTGAGT 60.080 57.895 0.00 0.00 0.00 3.41
3651 8909 2.456119 GCGATGGAGCCACGTTGAG 61.456 63.158 11.22 0.00 0.00 3.02
3652 8910 2.434185 GCGATGGAGCCACGTTGA 60.434 61.111 11.22 0.00 0.00 3.18
3653 8911 2.434884 AGCGATGGAGCCACGTTG 60.435 61.111 11.22 0.00 38.01 4.10
3654 8912 2.244117 ATCAGCGATGGAGCCACGTT 62.244 55.000 0.00 4.85 38.01 3.99
3655 8913 1.391933 TATCAGCGATGGAGCCACGT 61.392 55.000 0.00 0.00 38.01 4.49
3656 8914 0.037882 ATATCAGCGATGGAGCCACG 60.038 55.000 0.00 0.00 38.01 4.94
3657 8915 1.436600 CATATCAGCGATGGAGCCAC 58.563 55.000 0.00 0.00 38.01 5.01
3658 8916 0.321034 GCATATCAGCGATGGAGCCA 60.321 55.000 0.00 0.00 38.01 4.75
3659 8917 0.321034 TGCATATCAGCGATGGAGCC 60.321 55.000 0.00 0.00 38.01 4.70
3660 8918 1.077123 CTGCATATCAGCGATGGAGC 58.923 55.000 0.00 0.53 36.19 4.70
3676 8934 2.694362 TTTGGAGGTCTGCAAAGCTGC 61.694 52.381 12.48 3.51 44.10 5.25
3677 8935 1.321474 TTTGGAGGTCTGCAAAGCTG 58.679 50.000 12.48 0.00 44.10 4.24
3678 8936 3.827505 TTTGGAGGTCTGCAAAGCT 57.172 47.368 12.48 0.00 44.10 3.74
3681 8939 2.297701 GTCACTTTGGAGGTCTGCAAA 58.702 47.619 15.01 15.01 46.18 3.68
3682 8940 1.810031 CGTCACTTTGGAGGTCTGCAA 60.810 52.381 0.76 0.76 39.15 4.08
3683 8941 0.249868 CGTCACTTTGGAGGTCTGCA 60.250 55.000 0.00 0.00 0.00 4.41
3684 8942 1.569479 GCGTCACTTTGGAGGTCTGC 61.569 60.000 0.00 0.00 0.00 4.26
3685 8943 0.249868 TGCGTCACTTTGGAGGTCTG 60.250 55.000 0.00 0.00 0.00 3.51
3686 8944 0.249911 GTGCGTCACTTTGGAGGTCT 60.250 55.000 3.20 0.00 0.00 3.85
3687 8945 1.228657 GGTGCGTCACTTTGGAGGTC 61.229 60.000 9.31 0.00 34.40 3.85
3688 8946 1.227853 GGTGCGTCACTTTGGAGGT 60.228 57.895 9.31 0.00 34.40 3.85
3689 8947 0.817634 TTGGTGCGTCACTTTGGAGG 60.818 55.000 9.31 0.00 34.40 4.30
3690 8948 1.021202 TTTGGTGCGTCACTTTGGAG 58.979 50.000 9.31 0.00 34.40 3.86
3691 8949 1.403679 CTTTTGGTGCGTCACTTTGGA 59.596 47.619 9.31 0.00 34.40 3.53
3692 8950 1.134175 ACTTTTGGTGCGTCACTTTGG 59.866 47.619 9.31 1.58 34.40 3.28
3693 8951 2.159448 TCACTTTTGGTGCGTCACTTTG 60.159 45.455 9.31 1.04 44.98 2.77
3694 8952 2.088423 TCACTTTTGGTGCGTCACTTT 58.912 42.857 9.31 0.00 44.98 2.66
3695 8953 1.745232 TCACTTTTGGTGCGTCACTT 58.255 45.000 9.31 0.00 44.98 3.16
3696 8954 1.670811 CTTCACTTTTGGTGCGTCACT 59.329 47.619 9.31 0.00 44.98 3.41
3697 8955 1.859998 GCTTCACTTTTGGTGCGTCAC 60.860 52.381 1.92 1.92 44.98 3.67
3698 8956 0.380378 GCTTCACTTTTGGTGCGTCA 59.620 50.000 0.00 0.00 44.98 4.35
3699 8957 0.317854 GGCTTCACTTTTGGTGCGTC 60.318 55.000 0.00 0.00 44.98 5.19
3700 8958 1.034838 TGGCTTCACTTTTGGTGCGT 61.035 50.000 0.00 0.00 44.98 5.24
3701 8959 0.314935 ATGGCTTCACTTTTGGTGCG 59.685 50.000 0.00 0.00 44.98 5.34
3702 8960 2.137523 CAATGGCTTCACTTTTGGTGC 58.862 47.619 0.00 0.00 44.98 5.01
3703 8961 2.137523 GCAATGGCTTCACTTTTGGTG 58.862 47.619 0.00 0.00 41.18 4.17
3704 8962 1.070601 GGCAATGGCTTCACTTTTGGT 59.929 47.619 0.00 0.00 40.87 3.67
3705 8963 1.070445 TGGCAATGGCTTCACTTTTGG 59.930 47.619 8.59 0.00 40.87 3.28
3706 8964 2.529780 TGGCAATGGCTTCACTTTTG 57.470 45.000 8.59 0.00 40.87 2.44
3707 8965 3.071312 TCAATGGCAATGGCTTCACTTTT 59.929 39.130 8.59 0.00 40.87 2.27
3708 8966 2.633967 TCAATGGCAATGGCTTCACTTT 59.366 40.909 8.59 0.00 40.87 2.66
3709 8967 2.250031 TCAATGGCAATGGCTTCACTT 58.750 42.857 8.59 0.00 40.87 3.16
3710 8968 1.927487 TCAATGGCAATGGCTTCACT 58.073 45.000 8.59 0.00 40.87 3.41
3711 8969 2.340337 GTTCAATGGCAATGGCTTCAC 58.660 47.619 8.59 0.00 40.87 3.18
3712 8970 1.067706 CGTTCAATGGCAATGGCTTCA 60.068 47.619 8.59 0.00 40.87 3.02
3713 8971 1.202114 TCGTTCAATGGCAATGGCTTC 59.798 47.619 8.59 0.00 40.87 3.86
3714 8972 1.255882 TCGTTCAATGGCAATGGCTT 58.744 45.000 8.59 0.00 40.87 4.35
3715 8973 1.203052 CTTCGTTCAATGGCAATGGCT 59.797 47.619 8.59 0.00 40.87 4.75
3716 8974 1.202114 TCTTCGTTCAATGGCAATGGC 59.798 47.619 2.15 0.00 40.13 4.40
3717 8975 3.574284 TTCTTCGTTCAATGGCAATGG 57.426 42.857 2.15 0.00 0.00 3.16
3718 8976 5.903764 TTTTTCTTCGTTCAATGGCAATG 57.096 34.783 0.00 0.00 0.00 2.82
3739 8997 3.253921 CCCCGGTGTTATTCGTTCTTTTT 59.746 43.478 0.00 0.00 0.00 1.94
3740 8998 2.815503 CCCCGGTGTTATTCGTTCTTTT 59.184 45.455 0.00 0.00 0.00 2.27
3741 8999 2.429478 CCCCGGTGTTATTCGTTCTTT 58.571 47.619 0.00 0.00 0.00 2.52
3742 9000 1.947212 GCCCCGGTGTTATTCGTTCTT 60.947 52.381 0.00 0.00 0.00 2.52
3743 9001 0.392060 GCCCCGGTGTTATTCGTTCT 60.392 55.000 0.00 0.00 0.00 3.01
3744 9002 0.674269 TGCCCCGGTGTTATTCGTTC 60.674 55.000 0.00 0.00 0.00 3.95
3745 9003 0.250814 TTGCCCCGGTGTTATTCGTT 60.251 50.000 0.00 0.00 0.00 3.85
3746 9004 0.956902 GTTGCCCCGGTGTTATTCGT 60.957 55.000 0.00 0.00 0.00 3.85
3747 9005 0.956410 TGTTGCCCCGGTGTTATTCG 60.956 55.000 0.00 0.00 0.00 3.34
3748 9006 0.524414 GTGTTGCCCCGGTGTTATTC 59.476 55.000 0.00 0.00 0.00 1.75
3749 9007 0.896479 GGTGTTGCCCCGGTGTTATT 60.896 55.000 0.00 0.00 0.00 1.40
3750 9008 1.303806 GGTGTTGCCCCGGTGTTAT 60.304 57.895 0.00 0.00 0.00 1.89
3751 9009 2.113562 GGTGTTGCCCCGGTGTTA 59.886 61.111 0.00 0.00 0.00 2.41
3768 9026 3.242897 TTAACAGGCGTGTCGGGGG 62.243 63.158 13.21 0.00 35.08 5.40
3769 9027 1.740296 CTTAACAGGCGTGTCGGGG 60.740 63.158 13.21 0.38 35.08 5.73
3770 9028 1.740296 CCTTAACAGGCGTGTCGGG 60.740 63.158 13.21 11.08 35.08 5.14
3771 9029 3.870606 CCTTAACAGGCGTGTCGG 58.129 61.111 13.21 9.92 35.08 4.79
3804 9062 6.182627 ACATGTTGTCATCAATCACCACTAT 58.817 36.000 0.00 0.00 35.92 2.12
3998 9260 1.327303 GTGTTGATTCCACCCAAGCA 58.673 50.000 0.00 0.00 0.00 3.91
4160 9423 2.556840 TAGTAGCCCGGTACCGCAGT 62.557 60.000 29.15 16.28 38.24 4.40
4362 9651 0.904394 TGGACCCAACGGTACTACCC 60.904 60.000 0.00 0.00 44.45 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.