Multiple sequence alignment - TraesCS6A01G336300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G336300 chr6A 100.000 8936 0 0 1 8936 569685475 569694410 0.000000e+00 16502.0
1 TraesCS6A01G336300 chr6A 100.000 37 0 0 1199 1235 569686623 569686659 1.610000e-07 69.4
2 TraesCS6A01G336300 chr6A 100.000 37 0 0 1149 1185 569686673 569686709 1.610000e-07 69.4
3 TraesCS6A01G336300 chr6D 97.052 5664 137 21 1622 7272 424825163 424830809 0.000000e+00 9507.0
4 TraesCS6A01G336300 chr6D 93.686 776 26 10 7355 8125 424830806 424831563 0.000000e+00 1140.0
5 TraesCS6A01G336300 chr6D 85.714 399 24 9 1223 1610 424824733 424825109 3.020000e-104 390.0
6 TraesCS6A01G336300 chr6D 82.329 498 33 22 646 1113 424824241 424824713 1.820000e-101 381.0
7 TraesCS6A01G336300 chr6D 89.252 214 19 4 8278 8491 424831606 424831815 1.910000e-66 265.0
8 TraesCS6A01G336300 chr6D 87.113 194 3 8 336 529 424823901 424824072 5.470000e-47 200.0
9 TraesCS6A01G336300 chr6D 96.970 33 1 0 1 33 424823364 424823396 1.000000e-03 56.5
10 TraesCS6A01G336300 chr6B 96.305 5684 155 24 1609 7272 640576391 640582039 0.000000e+00 9282.0
11 TraesCS6A01G336300 chr6B 94.730 778 28 5 7355 8125 640582036 640582807 0.000000e+00 1197.0
12 TraesCS6A01G336300 chr6B 98.091 419 8 0 8518 8936 59735568 59735150 0.000000e+00 730.0
13 TraesCS6A01G336300 chr6B 86.511 556 24 20 1 542 640573271 640573789 1.680000e-156 564.0
14 TraesCS6A01G336300 chr6B 83.959 586 50 24 634 1185 640575410 640575985 1.030000e-143 521.0
15 TraesCS6A01G336300 chr6B 89.021 419 43 2 8518 8936 662109077 662108662 4.780000e-142 516.0
16 TraesCS6A01G336300 chr6B 85.071 422 22 13 1199 1610 640575949 640576339 8.410000e-105 392.0
17 TraesCS6A01G336300 chr6B 88.496 226 14 3 8278 8492 640582852 640583076 6.880000e-66 263.0
18 TraesCS6A01G336300 chr6B 88.785 107 8 2 7841 7943 640678595 640678701 2.620000e-25 128.0
19 TraesCS6A01G336300 chr5A 99.045 419 4 0 8518 8936 705599703 705599285 0.000000e+00 752.0
20 TraesCS6A01G336300 chr1A 98.818 423 4 1 8514 8936 329177837 329178258 0.000000e+00 752.0
21 TraesCS6A01G336300 chr1A 94.498 418 22 1 8520 8936 34158477 34158894 2.100000e-180 643.0
22 TraesCS6A01G336300 chr1A 95.652 92 4 0 7264 7355 161088559 161088468 2.010000e-31 148.0
23 TraesCS6A01G336300 chr1A 93.878 98 6 0 7265 7362 540456093 540456190 2.010000e-31 148.0
24 TraesCS6A01G336300 chr5B 98.349 424 6 1 8513 8936 710172594 710173016 0.000000e+00 743.0
25 TraesCS6A01G336300 chr7D 95.272 423 17 3 8514 8936 3671948 3671529 0.000000e+00 667.0
26 TraesCS6A01G336300 chr7D 85.876 354 50 0 5991 6344 116472498 116472145 2.360000e-100 377.0
27 TraesCS6A01G336300 chr7D 77.603 317 69 2 6646 6961 32944268 32944583 3.290000e-44 191.0
28 TraesCS6A01G336300 chr7D 88.136 118 9 4 7253 7369 406244645 406244532 1.560000e-27 135.0
29 TraesCS6A01G336300 chr4D 94.324 370 18 3 8513 8881 79008187 79008554 1.680000e-156 564.0
30 TraesCS6A01G336300 chr4B 96.907 291 8 1 8515 8804 94945966 94946256 3.750000e-133 486.0
31 TraesCS6A01G336300 chr4B 96.629 89 3 0 8848 8936 94946560 94946648 2.010000e-31 148.0
32 TraesCS6A01G336300 chr7B 86.723 354 47 0 5991 6344 75154184 75153831 2.340000e-105 394.0
33 TraesCS6A01G336300 chr7B 93.814 97 4 2 7270 7365 210794169 210794264 2.600000e-30 145.0
34 TraesCS6A01G336300 chr7B 89.815 108 9 2 7255 7361 412543776 412543670 4.350000e-28 137.0
35 TraesCS6A01G336300 chr7A 86.441 354 48 0 5991 6344 120579360 120579007 1.090000e-103 388.0
36 TraesCS6A01G336300 chr7A 96.875 96 3 0 7264 7359 432975641 432975736 2.580000e-35 161.0
37 TraesCS6A01G336300 chr3A 83.824 204 17 7 105 293 298149725 298149523 7.130000e-41 180.0
38 TraesCS6A01G336300 chr3A 90.566 53 5 0 6874 6926 172630742 172630794 4.480000e-08 71.3
39 TraesCS6A01G336300 chr2B 94.681 94 5 0 7269 7362 30331604 30331697 7.230000e-31 147.0
40 TraesCS6A01G336300 chr2B 91.509 106 6 3 7270 7375 766554469 766554367 9.350000e-30 143.0
41 TraesCS6A01G336300 chr5D 91.346 104 7 2 7264 7366 562534234 562534336 3.360000e-29 141.0
42 TraesCS6A01G336300 chr3D 90.566 53 5 0 6874 6926 153849225 153849277 4.480000e-08 71.3
43 TraesCS6A01G336300 chr3B 90.566 53 5 0 6874 6926 227417975 227417923 4.480000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G336300 chr6A 569685475 569694410 8935 False 16502.000000 16502 100.000000 1 8936 1 chr6A.!!$F1 8935
1 TraesCS6A01G336300 chr6D 424823364 424831815 8451 False 1705.642857 9507 90.302286 1 8491 7 chr6D.!!$F1 8490
2 TraesCS6A01G336300 chr6B 640573271 640583076 9805 False 2036.500000 9282 89.178667 1 8492 6 chr6B.!!$F2 8491
3 TraesCS6A01G336300 chr4B 94945966 94946648 682 False 317.000000 486 96.768000 8515 8936 2 chr4B.!!$F1 421

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
561 843 0.034896 ACCCGACCATCATTATCCGC 59.965 55.000 0.00 0.0 0.00 5.54 F
1290 3185 0.100861 GGTTCCGGCTTACTCTCTCG 59.899 60.000 0.00 0.0 0.00 4.04 F
2159 4124 0.319555 CCGTGTGATGAGTCCGTGTT 60.320 55.000 0.00 0.0 0.00 3.32 F
2484 4454 1.335597 GCCGGAACTTGGTAAAAGCAC 60.336 52.381 5.05 0.0 0.00 4.40 F
2943 4913 1.822371 AGCAGACCACGGTTTGTTTTT 59.178 42.857 8.40 0.0 33.44 1.94 F
3509 5479 2.092429 TGGCCCTATTCCAACAGTGATC 60.092 50.000 0.00 0.0 0.00 2.92 F
5086 7065 0.108396 GGTTTTGCCTTGCACCCATT 59.892 50.000 0.00 0.0 38.71 3.16 F
6188 8170 0.972983 ATGCTCACTACCCGCAGAGT 60.973 55.000 0.00 0.0 37.06 3.24 F
6891 8875 0.179148 TGATGTGTACAGCTACGGCG 60.179 55.000 4.80 4.8 44.37 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1519 3424 0.318784 GGAGCTTATACACCGCCGAG 60.319 60.000 0.00 0.00 0.00 4.63 R
2747 4717 0.321653 ACTGGGAACGGAGTGAATGC 60.322 55.000 0.00 0.00 45.00 3.56 R
3150 5120 4.340381 GCCCATCAAGCTATTGTTCTTCAT 59.660 41.667 0.00 0.00 37.68 2.57 R
4336 6315 3.184541 GCCATAAGCATTGCTGTTTCAG 58.815 45.455 12.82 0.89 39.62 3.02 R
4636 6615 5.512753 TGTAACGCATGATGGCATTAAAT 57.487 34.783 0.00 0.00 30.68 1.40 R
5106 7085 4.099266 TCAAATAATTGGGCAGGGAAATCG 59.901 41.667 0.00 0.00 37.15 3.34 R
6578 8562 0.318441 TCTTGGACGAAGGTGCTGAG 59.682 55.000 0.00 0.00 35.23 3.35 R
7524 9516 0.040157 CACAACCGACATTGGTGCAG 60.040 55.000 0.00 0.00 42.89 4.41 R
8263 10272 0.036388 TCGATTGGTGGAGGCTGTTC 60.036 55.000 0.00 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 79 3.842126 CGTGTGCATGTCCGCGAG 61.842 66.667 8.23 0.00 36.74 5.03
85 94 1.000283 CGCGAGCAGGAGAGGATAAAT 60.000 52.381 0.00 0.00 0.00 1.40
88 97 3.613910 GCGAGCAGGAGAGGATAAATCTC 60.614 52.174 0.00 0.00 42.08 2.75
89 98 3.571828 CGAGCAGGAGAGGATAAATCTCA 59.428 47.826 5.42 0.00 44.16 3.27
96 347 4.509600 GGAGAGGATAAATCTCACTTTGCG 59.490 45.833 5.42 0.00 44.16 4.85
155 413 4.609018 AGTCCGCAGCAGCAACGT 62.609 61.111 0.82 0.00 42.27 3.99
161 437 2.005537 GCAGCAGCAACGTTTCACG 61.006 57.895 0.00 0.00 43.86 4.35
309 586 4.436998 CTCCACACCCTCGGCGTC 62.437 72.222 6.85 0.00 0.00 5.19
426 703 0.249489 ACCTTATCATCAGCGCGTCC 60.249 55.000 8.43 0.00 0.00 4.79
450 727 6.269077 CCCTTTAAAATTCACCCTTGGTTACT 59.731 38.462 0.00 0.00 31.02 2.24
451 728 7.151976 CCTTTAAAATTCACCCTTGGTTACTG 58.848 38.462 0.00 0.00 31.02 2.74
459 736 1.679032 CCCTTGGTTACTGCTGCTACC 60.679 57.143 0.00 4.20 0.00 3.18
532 814 2.887568 CATCGTCTGCGCCTGGTC 60.888 66.667 4.18 0.00 38.14 4.02
561 843 0.034896 ACCCGACCATCATTATCCGC 59.965 55.000 0.00 0.00 0.00 5.54
562 844 0.673644 CCCGACCATCATTATCCGCC 60.674 60.000 0.00 0.00 0.00 6.13
563 845 0.673644 CCGACCATCATTATCCGCCC 60.674 60.000 0.00 0.00 0.00 6.13
564 846 1.014044 CGACCATCATTATCCGCCCG 61.014 60.000 0.00 0.00 0.00 6.13
565 847 1.298859 GACCATCATTATCCGCCCGC 61.299 60.000 0.00 0.00 0.00 6.13
566 848 1.302431 CCATCATTATCCGCCCGCA 60.302 57.895 0.00 0.00 0.00 5.69
567 849 1.577328 CCATCATTATCCGCCCGCAC 61.577 60.000 0.00 0.00 0.00 5.34
568 850 0.884259 CATCATTATCCGCCCGCACA 60.884 55.000 0.00 0.00 0.00 4.57
569 851 0.884704 ATCATTATCCGCCCGCACAC 60.885 55.000 0.00 0.00 0.00 3.82
570 852 1.817520 CATTATCCGCCCGCACACA 60.818 57.895 0.00 0.00 0.00 3.72
571 853 1.817941 ATTATCCGCCCGCACACAC 60.818 57.895 0.00 0.00 0.00 3.82
572 854 2.529454 ATTATCCGCCCGCACACACA 62.529 55.000 0.00 0.00 0.00 3.72
573 855 3.943479 TATCCGCCCGCACACACAC 62.943 63.158 0.00 0.00 0.00 3.82
576 858 4.312231 CGCCCGCACACACACTTG 62.312 66.667 0.00 0.00 0.00 3.16
578 860 2.901840 CCCGCACACACACTTGCT 60.902 61.111 0.00 0.00 36.54 3.91
589 938 4.994852 ACACACACTTGCTCGTAATGTAAT 59.005 37.500 0.00 0.00 0.00 1.89
597 946 3.874543 TGCTCGTAATGTAATGCCGATTT 59.125 39.130 0.00 0.00 30.47 2.17
626 975 6.512342 TTTACAAGGAGTCTCTAGTGTAGC 57.488 41.667 0.00 0.00 0.00 3.58
628 977 3.245300 ACAAGGAGTCTCTAGTGTAGCCA 60.245 47.826 0.00 0.00 0.00 4.75
630 979 2.847449 AGGAGTCTCTAGTGTAGCCAGA 59.153 50.000 0.00 0.00 0.00 3.86
631 980 3.461831 AGGAGTCTCTAGTGTAGCCAGAT 59.538 47.826 0.00 0.00 0.00 2.90
632 981 3.568007 GGAGTCTCTAGTGTAGCCAGATG 59.432 52.174 0.00 0.00 0.00 2.90
633 982 4.456535 GAGTCTCTAGTGTAGCCAGATGA 58.543 47.826 0.00 0.00 0.00 2.92
637 986 5.808030 GTCTCTAGTGTAGCCAGATGAAAAC 59.192 44.000 0.00 0.00 0.00 2.43
638 987 5.086104 TCTAGTGTAGCCAGATGAAAACC 57.914 43.478 0.00 0.00 0.00 3.27
639 988 3.788227 AGTGTAGCCAGATGAAAACCA 57.212 42.857 0.00 0.00 0.00 3.67
847 2694 0.948678 CCACCGTAACAAACCACAGG 59.051 55.000 0.00 0.00 0.00 4.00
849 2696 1.871039 CACCGTAACAAACCACAGGAG 59.129 52.381 0.00 0.00 0.00 3.69
850 2697 1.202722 ACCGTAACAAACCACAGGAGG 60.203 52.381 0.00 0.00 0.00 4.30
851 2698 1.202722 CCGTAACAAACCACAGGAGGT 60.203 52.381 0.00 0.00 45.91 3.85
852 2699 2.140717 CGTAACAAACCACAGGAGGTC 58.859 52.381 0.00 0.00 42.25 3.85
853 2700 2.501261 GTAACAAACCACAGGAGGTCC 58.499 52.381 0.00 0.00 42.25 4.46
854 2701 0.185175 AACAAACCACAGGAGGTCCC 59.815 55.000 0.00 0.00 42.25 4.46
855 2702 1.074951 CAAACCACAGGAGGTCCCC 59.925 63.158 0.00 0.00 42.25 4.81
856 2703 2.160853 AAACCACAGGAGGTCCCCC 61.161 63.158 0.00 0.00 42.25 5.40
899 2756 2.203714 CGAGATCCTCCCCTCCCC 60.204 72.222 0.00 0.00 0.00 4.81
945 2816 3.222855 CAGCACGGCAAAACCCCA 61.223 61.111 0.00 0.00 33.26 4.96
1128 3023 3.691744 CTCGTGCTCGTGCTCCCTC 62.692 68.421 11.19 0.00 40.48 4.30
1179 3074 2.568090 GCCCATGGCTTCGTGTTG 59.432 61.111 6.09 0.00 46.69 3.33
1180 3075 2.993471 GCCCATGGCTTCGTGTTGG 61.993 63.158 6.09 0.00 46.69 3.77
1181 3076 2.568090 CCATGGCTTCGTGTTGGC 59.432 61.111 0.00 0.00 0.00 4.52
1182 3077 2.176546 CATGGCTTCGTGTTGGCG 59.823 61.111 0.00 0.00 0.00 5.69
1183 3078 3.055719 ATGGCTTCGTGTTGGCGG 61.056 61.111 0.00 0.00 0.00 6.13
1187 3082 3.423154 CTTCGTGTTGGCGGCCTC 61.423 66.667 21.46 13.58 0.00 4.70
1254 3149 2.347490 GTTCTGCTTGCTCGGGGA 59.653 61.111 0.00 0.00 0.00 4.81
1270 3165 2.202837 GAACGGGGATTCGTCGGG 60.203 66.667 0.00 0.00 43.07 5.14
1275 3170 2.188731 GGGATTCGTCGGGGGTTC 59.811 66.667 0.00 0.00 0.00 3.62
1276 3171 2.188731 GGATTCGTCGGGGGTTCC 59.811 66.667 0.00 0.00 0.00 3.62
1285 3180 2.588439 GGGGGTTCCGGCTTACTC 59.412 66.667 0.00 0.00 0.00 2.59
1286 3181 1.993948 GGGGGTTCCGGCTTACTCT 60.994 63.158 0.00 0.00 0.00 3.24
1287 3182 1.521141 GGGGTTCCGGCTTACTCTC 59.479 63.158 0.00 0.00 0.00 3.20
1288 3183 0.976590 GGGGTTCCGGCTTACTCTCT 60.977 60.000 0.00 0.00 0.00 3.10
1289 3184 0.460722 GGGTTCCGGCTTACTCTCTC 59.539 60.000 0.00 0.00 0.00 3.20
1290 3185 0.100861 GGTTCCGGCTTACTCTCTCG 59.899 60.000 0.00 0.00 0.00 4.04
1291 3186 0.525882 GTTCCGGCTTACTCTCTCGC 60.526 60.000 0.00 0.00 0.00 5.03
1298 3193 0.524392 CTTACTCTCTCGCGCTGGTG 60.524 60.000 5.56 0.00 0.00 4.17
1338 3233 1.833787 TTTCTAGTGGGGCGTGGTCC 61.834 60.000 0.00 0.00 0.00 4.46
1356 3251 2.418976 GTCCGGTCTTTGTTTATGGCTC 59.581 50.000 0.00 0.00 0.00 4.70
1358 3253 1.202031 CGGTCTTTGTTTATGGCTCGC 60.202 52.381 0.00 0.00 0.00 5.03
1373 3268 0.804989 CTCGCTGATTTGGTGTTCCC 59.195 55.000 0.00 0.00 0.00 3.97
1383 3278 1.966451 GGTGTTCCCTCCGCTGTTG 60.966 63.158 0.00 0.00 0.00 3.33
1385 3280 0.951040 GTGTTCCCTCCGCTGTTGAG 60.951 60.000 0.00 0.00 0.00 3.02
1391 3296 1.817099 CTCCGCTGTTGAGGATGGC 60.817 63.158 0.00 0.00 41.25 4.40
1426 3331 2.599408 TCCCGTCTCCTGTTCTTAGT 57.401 50.000 0.00 0.00 0.00 2.24
1427 3332 3.726557 TCCCGTCTCCTGTTCTTAGTA 57.273 47.619 0.00 0.00 0.00 1.82
1428 3333 3.618351 TCCCGTCTCCTGTTCTTAGTAG 58.382 50.000 0.00 0.00 0.00 2.57
1429 3334 3.009916 TCCCGTCTCCTGTTCTTAGTAGT 59.990 47.826 0.00 0.00 0.00 2.73
1436 3341 4.669700 TCCTGTTCTTAGTAGTACCAGCA 58.330 43.478 0.00 0.00 0.00 4.41
1446 3351 3.389329 AGTAGTACCAGCATCTCCCATTG 59.611 47.826 0.00 0.00 0.00 2.82
1494 3399 1.404717 CCGTTCACTGCTACATCTGCT 60.405 52.381 0.00 0.00 0.00 4.24
1504 3409 3.376234 TGCTACATCTGCTGCATCTTTTC 59.624 43.478 1.31 0.00 0.00 2.29
1516 3421 0.391263 ATCTTTTCCCTGTCGTCGGC 60.391 55.000 0.00 0.00 0.00 5.54
1517 3422 2.356553 TTTTCCCTGTCGTCGGCG 60.357 61.111 1.15 1.15 39.92 6.46
1583 3488 6.476380 CACAAATGCGGCATATTTCATTTAGT 59.524 34.615 17.00 4.52 37.12 2.24
1584 3489 7.647318 CACAAATGCGGCATATTTCATTTAGTA 59.353 33.333 17.00 0.00 37.12 1.82
1585 3490 7.647715 ACAAATGCGGCATATTTCATTTAGTAC 59.352 33.333 17.00 0.00 37.12 2.73
1619 3577 1.408969 TCTCAAGTTGTTTTGGGGGC 58.591 50.000 2.11 0.00 0.00 5.80
1688 3646 2.512485 TGTGCATTTGGAAGCAACAG 57.488 45.000 0.00 0.00 43.20 3.16
1704 3662 4.749310 AGTCAAGCGCCTCTGCCG 62.749 66.667 2.29 0.00 34.65 5.69
1756 3714 5.537188 TCTTCAGTTCTTCTTCTTCTGCTC 58.463 41.667 0.00 0.00 0.00 4.26
1829 3787 4.627255 GCTGGAGATCAAGAAATCCTTCCA 60.627 45.833 0.00 0.00 32.24 3.53
2104 4069 0.999406 AGCGTCGTGTCAATGTATGC 59.001 50.000 0.00 0.00 0.00 3.14
2128 4093 7.652909 TGCTGTTACATTCTTTCCTGAAATTTG 59.347 33.333 0.00 0.00 0.00 2.32
2141 4106 5.990996 TCCTGAAATTTGAATGCTTTTGTCC 59.009 36.000 0.00 0.00 0.00 4.02
2159 4124 0.319555 CCGTGTGATGAGTCCGTGTT 60.320 55.000 0.00 0.00 0.00 3.32
2161 4126 2.608506 CCGTGTGATGAGTCCGTGTTAA 60.609 50.000 0.00 0.00 0.00 2.01
2249 4215 3.548770 TGATGAGATTGGTGATTGCTCC 58.451 45.455 0.00 0.00 0.00 4.70
2281 4247 4.002906 TGTTGTAAGTGGGCTTCAGTAG 57.997 45.455 0.00 0.00 36.22 2.57
2447 4417 4.107622 CTGAAGCACCTTGAAAACTTGTG 58.892 43.478 0.00 0.00 0.00 3.33
2458 4428 6.265422 CCTTGAAAACTTGTGAGGGTTATTCT 59.735 38.462 0.00 0.00 0.00 2.40
2484 4454 1.335597 GCCGGAACTTGGTAAAAGCAC 60.336 52.381 5.05 0.00 0.00 4.40
2522 4492 7.217200 TCATAATCCCTGCTGTTACTTGTATC 58.783 38.462 0.00 0.00 0.00 2.24
2524 4494 5.700402 ATCCCTGCTGTTACTTGTATCTT 57.300 39.130 0.00 0.00 0.00 2.40
2661 4631 6.765989 TGGGTTAGTTCTAATGTGATATGTGC 59.234 38.462 0.00 0.00 0.00 4.57
2921 4891 2.101582 GCTCAGACATAGTGTGTAGGGG 59.898 54.545 0.00 0.00 42.36 4.79
2943 4913 1.822371 AGCAGACCACGGTTTGTTTTT 59.178 42.857 8.40 0.00 33.44 1.94
3150 5120 3.671971 CGCTTTTGTTTGGTTCAGTGACA 60.672 43.478 0.00 0.00 0.00 3.58
3398 5368 7.402054 TGTGGTAGTCATTTCACCAATAGAAT 58.598 34.615 0.00 0.00 43.70 2.40
3509 5479 2.092429 TGGCCCTATTCCAACAGTGATC 60.092 50.000 0.00 0.00 0.00 2.92
3597 5567 6.375455 AGGAATTATATCAGCCCTTAAATGCG 59.625 38.462 0.00 0.00 0.00 4.73
3601 5571 3.782889 ATCAGCCCTTAAATGCGAAAC 57.217 42.857 0.00 0.00 0.00 2.78
3943 5915 3.972502 CGGCGCTTAATTATTTGTAAGCC 59.027 43.478 7.64 4.09 46.20 4.35
3949 5921 7.646130 GCGCTTAATTATTTGTAAGCCATGTAA 59.354 33.333 0.00 0.00 46.20 2.41
3962 5934 8.104566 TGTAAGCCATGTAACCTTTGTACTATT 58.895 33.333 0.00 0.00 0.00 1.73
4105 6083 2.370281 ACTCACAGCCTTGTATGACG 57.630 50.000 0.00 0.00 35.25 4.35
4232 6210 4.080356 TGAACTTGAGGGAATGATACCTGG 60.080 45.833 0.00 0.00 37.18 4.45
4282 6261 8.905103 TGTTAGCTTGTAAGTTTCACTTTTTC 57.095 30.769 0.00 0.00 39.51 2.29
4286 6265 5.597806 CTTGTAAGTTTCACTTTTTCCCCC 58.402 41.667 0.00 0.00 39.51 5.40
4297 6276 7.625498 TCACTTTTTCCCCCTGAAATTATTT 57.375 32.000 0.00 0.00 42.38 1.40
4301 6280 7.457852 ACTTTTTCCCCCTGAAATTATTTAGCT 59.542 33.333 0.00 0.00 42.38 3.32
4302 6281 8.903059 TTTTTCCCCCTGAAATTATTTAGCTA 57.097 30.769 0.00 0.00 42.38 3.32
4652 6631 7.428020 TCAGAAAGTATTTAATGCCATCATGC 58.572 34.615 0.00 0.00 39.27 4.06
4987 6966 6.417930 GCTTTTGTTTCAGTGATTTGTCCTAC 59.582 38.462 0.00 0.00 0.00 3.18
5086 7065 0.108396 GGTTTTGCCTTGCACCCATT 59.892 50.000 0.00 0.00 38.71 3.16
5171 7150 9.834628 TTGTTTTGTTGTTACAGAAAACTAGAG 57.165 29.630 23.09 0.00 36.56 2.43
5266 7246 6.708949 ACCTGAAAAGCTATTCGAACTGTTTA 59.291 34.615 0.00 0.00 31.80 2.01
5571 7551 7.435068 TGTCTTTATTAAGTTGCTCTGGAAC 57.565 36.000 0.00 0.00 32.98 3.62
5582 7562 4.142609 TGCTCTGGAACATAACCTCATC 57.857 45.455 0.00 0.00 38.20 2.92
5598 7578 3.679980 CCTCATCAGACCACTAACAAACG 59.320 47.826 0.00 0.00 0.00 3.60
6188 8170 0.972983 ATGCTCACTACCCGCAGAGT 60.973 55.000 0.00 0.00 37.06 3.24
6191 8173 1.460504 CTCACTACCCGCAGAGTGTA 58.539 55.000 8.19 0.00 43.01 2.90
6387 8370 1.541588 GGGGCACAGTTTCACTTCATC 59.458 52.381 0.00 0.00 0.00 2.92
6388 8371 1.197721 GGGCACAGTTTCACTTCATCG 59.802 52.381 0.00 0.00 0.00 3.84
6428 8411 5.045066 ACCTTTTCCTTTCTACCCTCCATAC 60.045 44.000 0.00 0.00 0.00 2.39
6430 8413 2.674420 TCCTTTCTACCCTCCATACGG 58.326 52.381 0.00 0.00 0.00 4.02
6578 8562 7.530010 TGCTAATCTGCAAGTCTTTGTTTATC 58.470 34.615 0.00 0.00 40.29 1.75
6683 8667 3.129502 CACCATGACTGCAGCCCG 61.130 66.667 15.27 0.00 0.00 6.13
6746 8730 0.253044 ACAAGGACTATGTGGCGCAT 59.747 50.000 18.65 18.65 41.42 4.73
6848 8832 2.279517 GACCCTGAGTATGCGCGG 60.280 66.667 8.83 0.00 0.00 6.46
6891 8875 0.179148 TGATGTGTACAGCTACGGCG 60.179 55.000 4.80 4.80 44.37 6.46
6906 8890 3.537297 GCGTCGTCTTGCTCGAGC 61.537 66.667 30.42 30.42 37.99 5.03
6974 8958 9.226606 CATCACCTGGTAACTAATTTTCACTTA 57.773 33.333 0.00 0.00 37.61 2.24
6982 8966 9.590088 GGTAACTAATTTTCACTTACTTGTTCG 57.410 33.333 0.00 0.00 0.00 3.95
6985 8969 9.498307 AACTAATTTTCACTTACTTGTTCGTTG 57.502 29.630 0.00 0.00 0.00 4.10
6993 8977 2.038387 ACTTGTTCGTTGCCTTCACT 57.962 45.000 0.00 0.00 0.00 3.41
7063 9047 1.476110 CGTGTTCCTTGAAGGGGACAA 60.476 52.381 18.33 1.62 35.00 3.18
7267 9252 5.934625 CCACTGTCAAAAACTGTAGCTATCT 59.065 40.000 0.00 0.00 37.90 1.98
7268 9253 7.097192 CCACTGTCAAAAACTGTAGCTATCTA 58.903 38.462 0.00 0.00 37.90 1.98
7269 9254 7.276658 CCACTGTCAAAAACTGTAGCTATCTAG 59.723 40.741 0.00 0.00 37.90 2.43
7270 9255 7.815068 CACTGTCAAAAACTGTAGCTATCTAGT 59.185 37.037 0.00 0.00 37.90 2.57
7271 9256 9.021807 ACTGTCAAAAACTGTAGCTATCTAGTA 57.978 33.333 0.00 0.00 38.18 1.82
7272 9257 9.291664 CTGTCAAAAACTGTAGCTATCTAGTAC 57.708 37.037 0.00 0.00 0.00 2.73
7273 9258 9.021807 TGTCAAAAACTGTAGCTATCTAGTACT 57.978 33.333 0.00 0.00 0.00 2.73
7274 9259 9.857957 GTCAAAAACTGTAGCTATCTAGTACTT 57.142 33.333 0.00 0.00 0.00 2.24
7276 9261 9.303537 CAAAAACTGTAGCTATCTAGTACTTCC 57.696 37.037 0.00 0.00 0.00 3.46
7277 9262 8.826293 AAAACTGTAGCTATCTAGTACTTCCT 57.174 34.615 0.00 0.00 0.00 3.36
7278 9263 8.454570 AAACTGTAGCTATCTAGTACTTCCTC 57.545 38.462 0.00 0.00 0.00 3.71
7279 9264 7.383156 ACTGTAGCTATCTAGTACTTCCTCT 57.617 40.000 0.00 0.00 0.00 3.69
7280 9265 7.221450 ACTGTAGCTATCTAGTACTTCCTCTG 58.779 42.308 0.00 0.00 0.00 3.35
7281 9266 7.139287 TGTAGCTATCTAGTACTTCCTCTGT 57.861 40.000 0.00 0.00 0.00 3.41
7282 9267 8.260099 TGTAGCTATCTAGTACTTCCTCTGTA 57.740 38.462 0.00 0.00 0.00 2.74
7283 9268 8.712103 TGTAGCTATCTAGTACTTCCTCTGTAA 58.288 37.037 0.00 0.00 0.00 2.41
7284 9269 9.558396 GTAGCTATCTAGTACTTCCTCTGTAAA 57.442 37.037 0.00 0.00 0.00 2.01
7285 9270 8.454570 AGCTATCTAGTACTTCCTCTGTAAAC 57.545 38.462 0.00 0.00 0.00 2.01
7286 9271 8.276477 AGCTATCTAGTACTTCCTCTGTAAACT 58.724 37.037 0.00 0.00 0.00 2.66
7287 9272 9.558396 GCTATCTAGTACTTCCTCTGTAAACTA 57.442 37.037 0.00 0.00 0.00 2.24
7298 9283 9.400638 CTTCCTCTGTAAACTAATATAAGAGCG 57.599 37.037 0.00 0.00 0.00 5.03
7299 9284 8.461249 TCCTCTGTAAACTAATATAAGAGCGT 57.539 34.615 0.00 0.00 0.00 5.07
7300 9285 8.910944 TCCTCTGTAAACTAATATAAGAGCGTT 58.089 33.333 0.00 0.00 0.00 4.84
7301 9286 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
7322 9307 8.913656 GCGTTTAGATCGCTAAATTAGTAATCT 58.086 33.333 17.17 17.17 45.47 2.40
7331 9316 9.982651 TCGCTAAATTAGTAATCTAAATGCTCT 57.017 29.630 1.68 0.00 39.23 4.09
7349 9334 9.490379 AAATGCTCTTATATTAGTTTACGGAGG 57.510 33.333 0.00 0.00 0.00 4.30
7350 9335 6.989659 TGCTCTTATATTAGTTTACGGAGGG 58.010 40.000 0.00 0.00 0.00 4.30
7351 9336 6.779049 TGCTCTTATATTAGTTTACGGAGGGA 59.221 38.462 0.00 0.00 0.00 4.20
7352 9337 7.039923 TGCTCTTATATTAGTTTACGGAGGGAG 60.040 40.741 0.00 0.00 0.00 4.30
7353 9338 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
7382 9367 7.483580 ACTACTAGTACCTTCTGCTTTGATT 57.516 36.000 0.00 0.00 0.00 2.57
7442 9430 5.099042 TCCCCTACTCTGTCAAAATTAGC 57.901 43.478 0.00 0.00 0.00 3.09
7471 9459 3.347216 GAGTAAGATGCCCATGTTGTGT 58.653 45.455 1.36 0.00 0.00 3.72
7524 9516 2.158813 TGACTGTTGAACTTCCCTGTCC 60.159 50.000 0.00 0.00 0.00 4.02
7538 9530 1.300971 CTGTCCTGCACCAATGTCGG 61.301 60.000 0.00 0.00 0.00 4.79
7540 9532 0.889186 GTCCTGCACCAATGTCGGTT 60.889 55.000 0.00 0.00 37.07 4.44
7541 9533 0.888736 TCCTGCACCAATGTCGGTTG 60.889 55.000 0.00 0.00 37.07 3.77
7948 9940 1.400142 CAGAGTAGACTGACCTGAGCG 59.600 57.143 0.00 0.00 39.94 5.03
7964 9959 2.481471 GCGGCCAGGGTAGCATTTC 61.481 63.158 2.24 0.00 0.00 2.17
8027 10022 1.732941 TTGGGGATGTGTTCGATTCG 58.267 50.000 0.00 0.00 0.00 3.34
8028 10023 0.899019 TGGGGATGTGTTCGATTCGA 59.101 50.000 4.29 4.29 0.00 3.71
8029 10024 1.484653 TGGGGATGTGTTCGATTCGAT 59.515 47.619 9.96 0.00 35.23 3.59
8030 10025 2.093181 TGGGGATGTGTTCGATTCGATT 60.093 45.455 9.96 0.00 35.23 3.34
8059 10054 1.963172 TATGCTGCTGCTCATTCTGG 58.037 50.000 17.00 0.00 40.48 3.86
8070 10065 4.005650 TGCTCATTCTGGTTTCATCAGTC 58.994 43.478 0.00 0.00 34.15 3.51
8125 10122 0.033796 ACTGTTGGGCTGGGATCATG 60.034 55.000 0.00 0.00 0.00 3.07
8128 10125 1.325355 GTTGGGCTGGGATCATGATG 58.675 55.000 14.30 0.00 0.00 3.07
8146 10155 3.822735 TGATGAAACAGAAAGGAAGCTGG 59.177 43.478 0.00 0.00 36.47 4.85
8148 10157 2.951642 TGAAACAGAAAGGAAGCTGGTG 59.048 45.455 0.00 0.00 36.47 4.17
8149 10158 2.736670 AACAGAAAGGAAGCTGGTGT 57.263 45.000 0.00 0.00 36.47 4.16
8151 10160 3.018423 ACAGAAAGGAAGCTGGTGTTT 57.982 42.857 0.00 0.00 36.47 2.83
8152 10161 3.365472 ACAGAAAGGAAGCTGGTGTTTT 58.635 40.909 0.00 0.00 36.47 2.43
8153 10162 3.131046 ACAGAAAGGAAGCTGGTGTTTTG 59.869 43.478 0.00 0.00 36.47 2.44
8155 10164 1.780503 AAGGAAGCTGGTGTTTTGCT 58.219 45.000 0.00 0.00 38.87 3.91
8156 10165 1.035139 AGGAAGCTGGTGTTTTGCTG 58.965 50.000 0.00 0.00 37.11 4.41
8157 10166 0.032540 GGAAGCTGGTGTTTTGCTGG 59.967 55.000 0.00 0.00 37.11 4.85
8158 10167 1.032014 GAAGCTGGTGTTTTGCTGGA 58.968 50.000 0.00 0.00 37.11 3.86
8159 10168 1.000938 GAAGCTGGTGTTTTGCTGGAG 60.001 52.381 0.00 0.00 37.11 3.86
8160 10169 0.183492 AGCTGGTGTTTTGCTGGAGA 59.817 50.000 0.00 0.00 35.54 3.71
8161 10170 0.312102 GCTGGTGTTTTGCTGGAGAC 59.688 55.000 0.00 0.00 0.00 3.36
8162 10171 0.588252 CTGGTGTTTTGCTGGAGACG 59.412 55.000 0.00 0.00 0.00 4.18
8163 10172 0.817634 TGGTGTTTTGCTGGAGACGG 60.818 55.000 0.00 0.00 40.79 4.79
8164 10173 1.515521 GGTGTTTTGCTGGAGACGGG 61.516 60.000 0.00 0.00 37.13 5.28
8165 10174 0.818040 GTGTTTTGCTGGAGACGGGT 60.818 55.000 0.00 0.00 37.13 5.28
8166 10175 0.817634 TGTTTTGCTGGAGACGGGTG 60.818 55.000 0.00 0.00 37.13 4.61
8167 10176 1.896660 TTTTGCTGGAGACGGGTGC 60.897 57.895 0.00 0.00 37.13 5.01
8168 10177 2.616797 TTTTGCTGGAGACGGGTGCA 62.617 55.000 0.00 0.00 37.13 4.57
8169 10178 2.410322 TTTGCTGGAGACGGGTGCAT 62.410 55.000 0.00 0.00 37.13 3.96
8170 10179 2.512515 GCTGGAGACGGGTGCATC 60.513 66.667 0.00 0.00 37.13 3.91
8171 10180 2.187946 CTGGAGACGGGTGCATCC 59.812 66.667 5.70 5.70 0.00 3.51
8184 10193 4.415150 CATCCGGGCACAGGCAGT 62.415 66.667 0.00 0.00 45.49 4.40
8199 10208 3.753774 CAGTGCTGCTTTTACGGTG 57.246 52.632 0.00 0.00 0.00 4.94
8200 10209 0.385974 CAGTGCTGCTTTTACGGTGC 60.386 55.000 0.00 0.00 0.00 5.01
8201 10210 1.081442 GTGCTGCTTTTACGGTGCC 60.081 57.895 0.00 0.00 0.00 5.01
8202 10211 1.527148 TGCTGCTTTTACGGTGCCA 60.527 52.632 0.00 0.00 0.00 4.92
8203 10212 1.081442 GCTGCTTTTACGGTGCCAC 60.081 57.895 0.00 0.00 0.00 5.01
8204 10213 1.791103 GCTGCTTTTACGGTGCCACA 61.791 55.000 0.00 0.00 0.00 4.17
8205 10214 0.238289 CTGCTTTTACGGTGCCACAG 59.762 55.000 0.00 0.00 0.00 3.66
8206 10215 1.169661 TGCTTTTACGGTGCCACAGG 61.170 55.000 0.00 0.00 0.00 4.00
8217 10226 2.743928 CCACAGGCCTGTTCGCTC 60.744 66.667 36.06 0.00 42.83 5.03
8218 10227 2.031012 CACAGGCCTGTTCGCTCA 59.969 61.111 36.06 0.00 42.83 4.26
8219 10228 2.031516 CACAGGCCTGTTCGCTCAG 61.032 63.158 36.06 18.78 42.83 3.35
8220 10229 2.345244 CAGGCCTGTTCGCTCAGT 59.655 61.111 25.53 0.00 34.02 3.41
8221 10230 1.302033 CAGGCCTGTTCGCTCAGTT 60.302 57.895 25.53 0.00 34.02 3.16
8222 10231 1.302033 AGGCCTGTTCGCTCAGTTG 60.302 57.895 3.11 0.00 34.02 3.16
8223 10232 2.328099 GGCCTGTTCGCTCAGTTGG 61.328 63.158 0.00 0.00 34.02 3.77
8224 10233 2.328099 GCCTGTTCGCTCAGTTGGG 61.328 63.158 6.08 0.00 34.02 4.12
8225 10234 1.371183 CCTGTTCGCTCAGTTGGGA 59.629 57.895 6.08 0.00 34.02 4.37
8226 10235 0.951040 CCTGTTCGCTCAGTTGGGAC 60.951 60.000 6.08 0.00 34.02 4.46
8227 10236 1.284982 CTGTTCGCTCAGTTGGGACG 61.285 60.000 0.00 0.00 0.00 4.79
8228 10237 1.006571 GTTCGCTCAGTTGGGACGA 60.007 57.895 0.00 0.00 0.00 4.20
8229 10238 1.006571 TTCGCTCAGTTGGGACGAC 60.007 57.895 0.00 0.00 31.61 4.34
8230 10239 1.740332 TTCGCTCAGTTGGGACGACA 61.740 55.000 0.00 0.00 31.61 4.35
8231 10240 2.022129 CGCTCAGTTGGGACGACAC 61.022 63.158 0.00 0.00 0.00 3.67
8232 10241 1.069090 GCTCAGTTGGGACGACACA 59.931 57.895 0.00 0.00 0.00 3.72
8233 10242 0.320771 GCTCAGTTGGGACGACACAT 60.321 55.000 0.00 0.00 0.00 3.21
8234 10243 1.067142 GCTCAGTTGGGACGACACATA 60.067 52.381 0.00 0.00 0.00 2.29
8235 10244 2.607187 CTCAGTTGGGACGACACATAC 58.393 52.381 0.00 0.00 0.00 2.39
8236 10245 2.231478 CTCAGTTGGGACGACACATACT 59.769 50.000 0.00 0.00 0.00 2.12
8237 10246 2.029380 TCAGTTGGGACGACACATACTG 60.029 50.000 18.54 18.54 38.55 2.74
8238 10247 1.968493 AGTTGGGACGACACATACTGT 59.032 47.619 0.00 0.00 34.96 3.55
8248 10257 2.168326 CACATACTGTGCCAGTGACA 57.832 50.000 15.55 0.00 45.01 3.58
8249 10258 2.703416 CACATACTGTGCCAGTGACAT 58.297 47.619 15.55 1.91 45.01 3.06
8250 10259 3.076621 CACATACTGTGCCAGTGACATT 58.923 45.455 15.55 0.00 45.01 2.71
8251 10260 3.125829 CACATACTGTGCCAGTGACATTC 59.874 47.826 15.55 0.00 45.01 2.67
8252 10261 3.008375 ACATACTGTGCCAGTGACATTCT 59.992 43.478 15.55 0.00 45.01 2.40
8253 10262 1.888215 ACTGTGCCAGTGACATTCTG 58.112 50.000 7.00 0.00 43.63 3.02
8254 10263 1.141657 ACTGTGCCAGTGACATTCTGT 59.858 47.619 7.00 0.00 43.63 3.41
8255 10264 2.224606 CTGTGCCAGTGACATTCTGTT 58.775 47.619 0.00 0.00 0.00 3.16
8256 10265 1.948834 TGTGCCAGTGACATTCTGTTG 59.051 47.619 0.00 0.00 0.00 3.33
8257 10266 1.949525 GTGCCAGTGACATTCTGTTGT 59.050 47.619 0.00 0.00 0.00 3.32
8258 10267 2.358898 GTGCCAGTGACATTCTGTTGTT 59.641 45.455 0.00 0.00 0.00 2.83
8259 10268 2.358582 TGCCAGTGACATTCTGTTGTTG 59.641 45.455 0.00 0.00 0.00 3.33
8260 10269 2.358898 GCCAGTGACATTCTGTTGTTGT 59.641 45.455 0.00 0.00 0.00 3.32
8261 10270 3.563808 GCCAGTGACATTCTGTTGTTGTA 59.436 43.478 0.00 0.00 0.00 2.41
8262 10271 4.216257 GCCAGTGACATTCTGTTGTTGTAT 59.784 41.667 0.00 0.00 0.00 2.29
8263 10272 5.692814 CCAGTGACATTCTGTTGTTGTATG 58.307 41.667 0.00 0.00 0.00 2.39
8264 10273 5.469760 CCAGTGACATTCTGTTGTTGTATGA 59.530 40.000 0.00 0.00 0.00 2.15
8265 10274 6.017192 CCAGTGACATTCTGTTGTTGTATGAA 60.017 38.462 0.00 0.00 0.00 2.57
8266 10275 6.852853 CAGTGACATTCTGTTGTTGTATGAAC 59.147 38.462 0.00 0.00 0.00 3.18
8267 10276 6.542005 AGTGACATTCTGTTGTTGTATGAACA 59.458 34.615 0.00 0.00 0.00 3.18
8269 10278 5.762045 ACATTCTGTTGTTGTATGAACAGC 58.238 37.500 0.00 0.00 45.80 4.40
8270 10279 4.829064 TTCTGTTGTTGTATGAACAGCC 57.171 40.909 0.00 0.00 45.80 4.85
8271 10280 4.085357 TCTGTTGTTGTATGAACAGCCT 57.915 40.909 0.00 0.00 45.80 4.58
8272 10281 4.065088 TCTGTTGTTGTATGAACAGCCTC 58.935 43.478 0.00 0.00 45.80 4.70
8273 10282 3.146066 TGTTGTTGTATGAACAGCCTCC 58.854 45.455 0.00 0.00 36.09 4.30
8274 10283 3.146066 GTTGTTGTATGAACAGCCTCCA 58.854 45.455 0.00 0.00 36.09 3.86
8275 10284 2.778299 TGTTGTATGAACAGCCTCCAC 58.222 47.619 0.00 0.00 36.09 4.02
8276 10285 2.084546 GTTGTATGAACAGCCTCCACC 58.915 52.381 0.00 0.00 36.83 4.61
8377 10386 3.018856 TCATGCCACTGTGATTGATTCC 58.981 45.455 9.86 0.00 0.00 3.01
8378 10387 2.885135 TGCCACTGTGATTGATTCCT 57.115 45.000 9.86 0.00 0.00 3.36
8379 10388 2.439409 TGCCACTGTGATTGATTCCTG 58.561 47.619 9.86 0.00 0.00 3.86
8428 10448 1.899887 TGGTAGTGCCGAGGAATTCCT 60.900 52.381 27.39 27.39 41.80 3.36
8430 10450 4.752890 TGGTAGTGCCGAGGAATTCCTAC 61.753 52.174 27.12 20.22 42.25 3.18
8492 10512 1.268743 TGCGAGCGATGACTGATACAG 60.269 52.381 0.00 0.00 37.52 2.74
8494 10514 2.031944 GCGAGCGATGACTGATACAGTA 60.032 50.000 4.36 0.00 45.44 2.74
8495 10515 3.546617 CGAGCGATGACTGATACAGTAC 58.453 50.000 4.36 0.00 45.44 2.73
8496 10516 3.002348 CGAGCGATGACTGATACAGTACA 59.998 47.826 4.36 5.68 45.44 2.90
8497 10517 4.319839 CGAGCGATGACTGATACAGTACAT 60.320 45.833 4.36 9.54 45.44 2.29
8498 10518 4.864633 AGCGATGACTGATACAGTACATG 58.135 43.478 15.55 0.00 45.44 3.21
8499 10519 3.426859 GCGATGACTGATACAGTACATGC 59.573 47.826 15.55 14.69 45.44 4.06
8500 10520 4.610945 CGATGACTGATACAGTACATGCA 58.389 43.478 15.55 0.00 45.44 3.96
8501 10521 5.225642 CGATGACTGATACAGTACATGCAT 58.774 41.667 15.55 0.00 45.44 3.96
8502 10522 5.118203 CGATGACTGATACAGTACATGCATG 59.882 44.000 25.09 25.09 45.44 4.06
8503 10523 4.696455 TGACTGATACAGTACATGCATGG 58.304 43.478 29.41 14.61 45.44 3.66
8504 10524 4.060900 GACTGATACAGTACATGCATGGG 58.939 47.826 29.41 17.69 45.44 4.00
8505 10525 3.181451 ACTGATACAGTACATGCATGGGG 60.181 47.826 29.41 17.36 43.46 4.96
8506 10526 2.154462 GATACAGTACATGCATGGGGC 58.846 52.381 29.41 18.18 45.13 5.80
8507 10527 0.182537 TACAGTACATGCATGGGGCC 59.817 55.000 29.41 14.06 43.89 5.80
8508 10528 1.076850 CAGTACATGCATGGGGCCA 60.077 57.895 29.41 7.30 43.89 5.36
8509 10529 0.683828 CAGTACATGCATGGGGCCAA 60.684 55.000 29.41 0.00 43.89 4.52
8510 10530 0.040942 AGTACATGCATGGGGCCAAA 59.959 50.000 29.41 4.21 43.89 3.28
8511 10531 0.461135 GTACATGCATGGGGCCAAAG 59.539 55.000 29.41 2.41 43.89 2.77
8512 10532 1.329171 TACATGCATGGGGCCAAAGC 61.329 55.000 29.41 2.57 43.89 3.51
8513 10533 2.039951 ATGCATGGGGCCAAAGCT 59.960 55.556 9.90 0.00 43.89 3.74
8514 10534 1.614226 ATGCATGGGGCCAAAGCTT 60.614 52.632 9.90 0.00 43.89 3.74
8515 10535 0.325484 ATGCATGGGGCCAAAGCTTA 60.325 50.000 9.90 0.00 43.89 3.09
8516 10536 0.325484 TGCATGGGGCCAAAGCTTAT 60.325 50.000 9.90 0.00 43.89 1.73
8540 10560 2.228582 GTGTGTTTGGTAGCATGCATGA 59.771 45.455 30.64 7.50 0.00 3.07
8818 10862 2.759973 TCCTGACCTAGCCGCCAG 60.760 66.667 0.00 0.00 0.00 4.85
8836 10880 4.625781 CGACCGCCCGCTAGCTAC 62.626 72.222 13.93 0.60 0.00 3.58
8837 10881 4.281947 GACCGCCCGCTAGCTACC 62.282 72.222 13.93 0.00 0.00 3.18
8840 10884 4.286320 CGCCCGCTAGCTACCCTG 62.286 72.222 13.93 0.00 0.00 4.45
8841 10885 4.610714 GCCCGCTAGCTACCCTGC 62.611 72.222 13.93 2.41 0.00 4.85
8842 10886 3.930012 CCCGCTAGCTACCCTGCC 61.930 72.222 13.93 0.00 0.00 4.85
8843 10887 4.286320 CCGCTAGCTACCCTGCCG 62.286 72.222 13.93 0.00 0.00 5.69
8844 10888 4.951963 CGCTAGCTACCCTGCCGC 62.952 72.222 13.93 0.00 0.00 6.53
8845 10889 4.610714 GCTAGCTACCCTGCCGCC 62.611 72.222 7.70 0.00 0.00 6.13
8846 10890 4.286320 CTAGCTACCCTGCCGCCG 62.286 72.222 0.00 0.00 0.00 6.46
8871 11152 2.342179 GCTTCCTTCTTCAACCTCTCG 58.658 52.381 0.00 0.00 0.00 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 57 2.746277 GGACATGCACACGGGGAC 60.746 66.667 0.00 0.00 0.00 4.46
70 79 4.953940 AGTGAGATTTATCCTCTCCTGC 57.046 45.455 0.00 0.00 38.70 4.85
89 98 0.741574 TGTTCACGGTCACGCAAAGT 60.742 50.000 0.00 0.00 46.04 2.66
96 347 1.535462 CAGGGAATTGTTCACGGTCAC 59.465 52.381 0.00 0.00 38.39 3.67
140 398 2.892334 GAAACGTTGCTGCTGCGGA 61.892 57.895 13.72 0.00 43.34 5.54
309 586 3.189287 AGTCAGCTTGCCGTTTTAATCAG 59.811 43.478 0.00 0.00 0.00 2.90
426 703 7.151976 CAGTAACCAAGGGTGAATTTTAAAGG 58.848 38.462 0.00 0.00 35.34 3.11
538 820 2.289694 GGATAATGATGGTCGGGTGGAG 60.290 54.545 0.00 0.00 0.00 3.86
539 821 1.697432 GGATAATGATGGTCGGGTGGA 59.303 52.381 0.00 0.00 0.00 4.02
540 822 1.608025 CGGATAATGATGGTCGGGTGG 60.608 57.143 0.00 0.00 0.00 4.61
541 823 1.795768 CGGATAATGATGGTCGGGTG 58.204 55.000 0.00 0.00 0.00 4.61
542 824 0.034896 GCGGATAATGATGGTCGGGT 59.965 55.000 0.00 0.00 0.00 5.28
547 829 1.302511 GCGGGCGGATAATGATGGT 60.303 57.895 0.00 0.00 0.00 3.55
548 830 1.302431 TGCGGGCGGATAATGATGG 60.302 57.895 0.00 0.00 0.00 3.51
561 843 2.896801 GAGCAAGTGTGTGTGCGGG 61.897 63.158 0.00 0.00 45.62 6.13
562 844 2.633657 GAGCAAGTGTGTGTGCGG 59.366 61.111 0.00 0.00 45.62 5.69
563 845 1.212455 TACGAGCAAGTGTGTGTGCG 61.212 55.000 0.00 0.00 45.62 5.34
564 846 0.934496 TTACGAGCAAGTGTGTGTGC 59.066 50.000 0.00 0.00 41.22 4.57
565 847 2.543848 ACATTACGAGCAAGTGTGTGTG 59.456 45.455 0.00 0.00 0.00 3.82
566 848 2.833794 ACATTACGAGCAAGTGTGTGT 58.166 42.857 0.00 0.00 0.00 3.72
567 849 4.983215 TTACATTACGAGCAAGTGTGTG 57.017 40.909 0.00 4.19 0.00 3.82
568 850 4.142902 GCATTACATTACGAGCAAGTGTGT 60.143 41.667 0.00 0.00 0.00 3.72
569 851 4.334443 GCATTACATTACGAGCAAGTGTG 58.666 43.478 0.00 0.00 0.00 3.82
570 852 3.374058 GGCATTACATTACGAGCAAGTGT 59.626 43.478 0.00 0.00 0.00 3.55
571 853 3.544048 CGGCATTACATTACGAGCAAGTG 60.544 47.826 0.00 0.00 0.00 3.16
572 854 2.607635 CGGCATTACATTACGAGCAAGT 59.392 45.455 0.00 0.00 0.00 3.16
573 855 2.863740 TCGGCATTACATTACGAGCAAG 59.136 45.455 0.00 0.00 0.00 4.01
574 856 2.894902 TCGGCATTACATTACGAGCAA 58.105 42.857 0.00 0.00 0.00 3.91
575 857 2.588027 TCGGCATTACATTACGAGCA 57.412 45.000 0.00 0.00 0.00 4.26
576 858 4.468095 AAATCGGCATTACATTACGAGC 57.532 40.909 0.00 0.00 36.97 5.03
609 958 2.847449 TCTGGCTACACTAGAGACTCCT 59.153 50.000 0.00 0.00 31.28 3.69
613 962 5.584253 TTTCATCTGGCTACACTAGAGAC 57.416 43.478 0.00 0.00 39.54 3.36
614 963 5.105310 GGTTTTCATCTGGCTACACTAGAGA 60.105 44.000 0.00 0.00 39.54 3.10
615 964 5.112686 GGTTTTCATCTGGCTACACTAGAG 58.887 45.833 0.00 0.00 39.54 2.43
616 965 4.530553 TGGTTTTCATCTGGCTACACTAGA 59.469 41.667 0.00 0.00 40.59 2.43
618 967 4.901197 TGGTTTTCATCTGGCTACACTA 57.099 40.909 0.00 0.00 0.00 2.74
620 969 3.758554 ACATGGTTTTCATCTGGCTACAC 59.241 43.478 0.00 0.00 32.92 2.90
621 970 4.032960 ACATGGTTTTCATCTGGCTACA 57.967 40.909 0.00 0.00 32.92 2.74
625 974 3.989817 GTCAAACATGGTTTTCATCTGGC 59.010 43.478 0.00 0.00 32.92 4.85
626 975 4.229096 CGTCAAACATGGTTTTCATCTGG 58.771 43.478 0.00 0.00 32.92 3.86
628 977 3.305335 GGCGTCAAACATGGTTTTCATCT 60.305 43.478 0.00 0.00 32.92 2.90
630 979 2.363680 TGGCGTCAAACATGGTTTTCAT 59.636 40.909 0.00 0.00 36.31 2.57
631 980 1.751351 TGGCGTCAAACATGGTTTTCA 59.249 42.857 0.00 0.00 0.00 2.69
632 981 2.124122 GTGGCGTCAAACATGGTTTTC 58.876 47.619 0.00 0.00 0.00 2.29
633 982 1.754226 AGTGGCGTCAAACATGGTTTT 59.246 42.857 0.00 0.00 0.00 2.43
637 986 0.950836 TGAAGTGGCGTCAAACATGG 59.049 50.000 0.00 0.00 0.00 3.66
638 987 2.772568 TTGAAGTGGCGTCAAACATG 57.227 45.000 0.00 0.00 32.13 3.21
639 988 3.317711 TGAATTGAAGTGGCGTCAAACAT 59.682 39.130 0.00 0.00 38.44 2.71
698 2540 2.280445 CCGTTTTTCAACTTGCCGAAAC 59.720 45.455 0.00 0.00 31.09 2.78
705 2547 5.061684 GGTTTCACTTCCGTTTTTCAACTTG 59.938 40.000 0.00 0.00 0.00 3.16
869 2716 3.490793 ATCTCGTGCGGAGGCGATG 62.491 63.158 1.17 0.00 43.34 3.84
870 2717 3.200887 GATCTCGTGCGGAGGCGAT 62.201 63.158 1.60 1.60 43.34 4.58
871 2718 3.889044 GATCTCGTGCGGAGGCGA 61.889 66.667 4.93 0.00 43.34 5.54
872 2719 4.933064 GGATCTCGTGCGGAGGCG 62.933 72.222 4.93 0.00 43.34 5.52
873 2720 3.492311 GAGGATCTCGTGCGGAGGC 62.492 68.421 4.93 0.00 43.34 4.70
899 2756 3.333219 TGCTGCTGAAGGAGGGGG 61.333 66.667 0.00 0.00 33.79 5.40
1163 3058 2.993471 GCCAACACGAAGCCATGGG 61.993 63.158 15.13 0.00 0.00 4.00
1164 3059 2.568090 GCCAACACGAAGCCATGG 59.432 61.111 7.63 7.63 0.00 3.66
1165 3060 2.176546 CGCCAACACGAAGCCATG 59.823 61.111 0.00 0.00 34.06 3.66
1166 3061 3.055719 CCGCCAACACGAAGCCAT 61.056 61.111 0.00 0.00 34.06 4.40
1170 3065 3.423154 GAGGCCGCCAACACGAAG 61.423 66.667 13.15 0.00 34.06 3.79
1216 3111 3.055719 CCGCCAACACGAAGCCAT 61.056 61.111 0.00 0.00 34.06 4.40
1254 3149 3.777910 CCCCGACGAATCCCCGTT 61.778 66.667 0.00 0.00 43.49 4.44
1270 3165 0.460722 GAGAGAGTAAGCCGGAACCC 59.539 60.000 5.05 0.00 0.00 4.11
1273 3168 1.807886 GCGAGAGAGTAAGCCGGAA 59.192 57.895 5.05 0.00 0.00 4.30
1275 3170 2.024871 CGCGAGAGAGTAAGCCGG 59.975 66.667 0.00 0.00 0.00 6.13
1276 3171 2.652496 GCGCGAGAGAGTAAGCCG 60.652 66.667 12.10 0.00 0.00 5.52
1278 3173 1.587613 CCAGCGCGAGAGAGTAAGC 60.588 63.158 12.10 0.00 0.00 3.09
1279 3174 0.524392 CACCAGCGCGAGAGAGTAAG 60.524 60.000 12.10 0.00 0.00 2.34
1281 3176 2.407428 CCACCAGCGCGAGAGAGTA 61.407 63.158 12.10 0.00 0.00 2.59
1282 3177 3.753434 CCACCAGCGCGAGAGAGT 61.753 66.667 12.10 0.00 0.00 3.24
1283 3178 1.729470 ATACCACCAGCGCGAGAGAG 61.729 60.000 12.10 0.00 0.00 3.20
1284 3179 1.320344 AATACCACCAGCGCGAGAGA 61.320 55.000 12.10 0.00 0.00 3.10
1285 3180 0.460284 AAATACCACCAGCGCGAGAG 60.460 55.000 12.10 0.00 0.00 3.20
1286 3181 0.036765 AAAATACCACCAGCGCGAGA 60.037 50.000 12.10 0.00 0.00 4.04
1287 3182 1.647346 TAAAATACCACCAGCGCGAG 58.353 50.000 12.10 0.00 0.00 5.03
1288 3183 2.319136 ATAAAATACCACCAGCGCGA 57.681 45.000 12.10 0.00 0.00 5.87
1289 3184 3.558418 ACTAATAAAATACCACCAGCGCG 59.442 43.478 0.00 0.00 0.00 6.86
1290 3185 4.788521 GCACTAATAAAATACCACCAGCGC 60.789 45.833 0.00 0.00 0.00 5.92
1291 3186 4.551990 CGCACTAATAAAATACCACCAGCG 60.552 45.833 0.00 0.00 0.00 5.18
1298 3193 3.872560 AGCGCGCACTAATAAAATACC 57.127 42.857 35.10 0.00 0.00 2.73
1338 3233 1.202031 GCGAGCCATAAACAAAGACCG 60.202 52.381 0.00 0.00 0.00 4.79
1356 3251 0.804989 GAGGGAACACCAAATCAGCG 59.195 55.000 0.00 0.00 43.89 5.18
1358 3253 1.453155 CGGAGGGAACACCAAATCAG 58.547 55.000 0.00 0.00 41.84 2.90
1373 3268 1.817099 GCCATCCTCAACAGCGGAG 60.817 63.158 0.00 0.00 31.82 4.63
1383 3278 4.566426 AATCTAGCATTAGGCCATCCTC 57.434 45.455 5.01 0.00 46.50 3.71
1385 3280 5.825151 GGATTAATCTAGCATTAGGCCATCC 59.175 44.000 14.95 0.00 46.50 3.51
1387 3282 5.630069 CGGGATTAATCTAGCATTAGGCCAT 60.630 44.000 14.95 0.00 46.50 4.40
1391 3296 6.287589 AGACGGGATTAATCTAGCATTAGG 57.712 41.667 14.95 0.00 0.00 2.69
1426 3331 3.384168 ACAATGGGAGATGCTGGTACTA 58.616 45.455 0.00 0.00 0.00 1.82
1427 3332 2.200081 ACAATGGGAGATGCTGGTACT 58.800 47.619 0.00 0.00 0.00 2.73
1428 3333 2.717639 ACAATGGGAGATGCTGGTAC 57.282 50.000 0.00 0.00 0.00 3.34
1429 3334 3.737559 AAACAATGGGAGATGCTGGTA 57.262 42.857 0.00 0.00 0.00 3.25
1436 3341 5.522641 AGGAAATGCTAAACAATGGGAGAT 58.477 37.500 0.00 0.00 0.00 2.75
1446 3351 4.457257 AGAAGTGCAGAGGAAATGCTAAAC 59.543 41.667 0.00 0.00 44.17 2.01
1494 3399 1.808411 GACGACAGGGAAAAGATGCA 58.192 50.000 0.00 0.00 0.00 3.96
1517 3422 1.954651 GCTTATACACCGCCGAGGC 60.955 63.158 3.59 3.59 46.52 4.70
1519 3424 0.318784 GGAGCTTATACACCGCCGAG 60.319 60.000 0.00 0.00 0.00 4.63
1520 3425 1.737816 GGAGCTTATACACCGCCGA 59.262 57.895 0.00 0.00 0.00 5.54
1583 3488 7.086685 ACTTGAGAAGGGGAAACAAATAGTA 57.913 36.000 0.00 0.00 0.00 1.82
1584 3489 5.953571 ACTTGAGAAGGGGAAACAAATAGT 58.046 37.500 0.00 0.00 0.00 2.12
1585 3490 6.265422 ACAACTTGAGAAGGGGAAACAAATAG 59.735 38.462 0.00 0.00 0.00 1.73
1619 3577 5.189659 TCAGATAACCAAACCAAAAACGG 57.810 39.130 0.00 0.00 0.00 4.44
1704 3662 0.460987 CACGAGGAATGGAGTCAGCC 60.461 60.000 0.00 0.00 0.00 4.85
1756 3714 2.200067 CACTCGATTAGCAGAAGCAGG 58.800 52.381 0.00 0.00 45.49 4.85
1849 3807 2.884207 GTCGCCGGACCAATCGTC 60.884 66.667 5.05 0.00 41.15 4.20
2104 4069 9.748708 TTCAAATTTCAGGAAAGAATGTAACAG 57.251 29.630 0.66 0.00 33.32 3.16
2128 4093 3.058293 TCATCACACGGACAAAAGCATTC 60.058 43.478 0.00 0.00 0.00 2.67
2141 4106 2.341318 TAACACGGACTCATCACACG 57.659 50.000 0.00 0.00 0.00 4.49
2159 4124 7.841956 TGACCAAACAATCAGGAAAAAGTTTA 58.158 30.769 0.00 0.00 0.00 2.01
2161 4126 6.293004 TGACCAAACAATCAGGAAAAAGTT 57.707 33.333 0.00 0.00 0.00 2.66
2249 4215 5.390613 CCCACTTACAACATTTTAAGCGAG 58.609 41.667 0.00 0.00 0.00 5.03
2311 4281 3.775316 AGATCCAAAGGAATACGACACCT 59.225 43.478 0.00 0.00 34.34 4.00
2447 4417 2.683362 CCGGCAAGAAAGAATAACCCTC 59.317 50.000 0.00 0.00 0.00 4.30
2458 4428 2.642154 TACCAAGTTCCGGCAAGAAA 57.358 45.000 0.00 0.00 0.00 2.52
2484 4454 3.059597 GGGATTATGATGAGTGAAACGCG 60.060 47.826 3.53 3.53 45.86 6.01
2661 4631 2.696187 GTTCTGAGCTAAGTCCCTAGGG 59.304 54.545 23.22 23.22 0.00 3.53
2747 4717 0.321653 ACTGGGAACGGAGTGAATGC 60.322 55.000 0.00 0.00 45.00 3.56
2810 4780 5.243730 GCATTTGCTAGGCCCTTGAATATTA 59.756 40.000 0.00 0.00 38.21 0.98
2856 4826 4.625311 GCATTTTGTCCAAACCCTAAATCG 59.375 41.667 0.00 0.00 0.00 3.34
2921 4891 1.589803 AACAAACCGTGGTCTGCTAC 58.410 50.000 0.00 0.00 0.00 3.58
2943 4913 6.513806 AGATGCATACAACAAAGCATGTAA 57.486 33.333 0.00 0.00 46.71 2.41
3150 5120 4.340381 GCCCATCAAGCTATTGTTCTTCAT 59.660 41.667 0.00 0.00 37.68 2.57
3446 5416 6.624423 CAAAGACCTAGCACAAATAGCAAAT 58.376 36.000 0.00 0.00 0.00 2.32
3821 5793 9.027202 TGTGGTATCAGTAACTACTTGTGATAA 57.973 33.333 0.00 0.00 33.46 1.75
4232 6210 9.708222 CAAGACTTGTGCATGAACTTATATTAC 57.292 33.333 5.18 0.00 0.00 1.89
4282 6261 7.609532 CAGAGATAGCTAAATAATTTCAGGGGG 59.390 40.741 0.00 0.00 0.00 5.40
4301 6280 9.760926 AAGTTATGTATCCAGCTATCAGAGATA 57.239 33.333 0.00 0.00 0.00 1.98
4302 6281 8.530311 CAAGTTATGTATCCAGCTATCAGAGAT 58.470 37.037 0.00 0.00 0.00 2.75
4321 6300 6.039270 TGCTGTTTCAGTAGCAAACAAGTTAT 59.961 34.615 0.00 0.00 46.06 1.89
4336 6315 3.184541 GCCATAAGCATTGCTGTTTCAG 58.815 45.455 12.82 0.89 39.62 3.02
4636 6615 5.512753 TGTAACGCATGATGGCATTAAAT 57.487 34.783 0.00 0.00 30.68 1.40
4652 6631 7.837202 TCCCTAAAAGTGTATTCATGTAACG 57.163 36.000 0.00 0.00 0.00 3.18
5106 7085 4.099266 TCAAATAATTGGGCAGGGAAATCG 59.901 41.667 0.00 0.00 37.15 3.34
5171 7150 5.930135 ACATCCCCAGTCATATTGTTACTC 58.070 41.667 0.00 0.00 0.00 2.59
5571 7551 5.977635 TGTTAGTGGTCTGATGAGGTTATG 58.022 41.667 0.00 0.00 0.00 1.90
5582 7562 3.199677 TGGAACGTTTGTTAGTGGTCTG 58.800 45.455 0.46 0.00 38.78 3.51
5598 7578 4.946784 ATGCACGAAAGAGTATTGGAAC 57.053 40.909 0.00 0.00 0.00 3.62
6047 8029 7.524717 TTCTGTCATCCTCATTATATCGTCA 57.475 36.000 0.00 0.00 0.00 4.35
6188 8170 5.869579 AGCTCAGTCTCAAATTCCTTTACA 58.130 37.500 0.00 0.00 0.00 2.41
6191 8173 3.999663 CGAGCTCAGTCTCAAATTCCTTT 59.000 43.478 15.40 0.00 33.41 3.11
6387 8370 6.402226 GGAAAAGGTTCTAAATACTGAGCACG 60.402 42.308 0.00 0.00 33.92 5.34
6388 8371 6.655425 AGGAAAAGGTTCTAAATACTGAGCAC 59.345 38.462 0.00 0.00 33.92 4.40
6428 8411 3.436704 ACATGTTTGCTGACAGATAACCG 59.563 43.478 6.65 6.01 32.19 4.44
6430 8413 4.161333 GCACATGTTTGCTGACAGATAAC 58.839 43.478 6.65 9.58 39.59 1.89
6528 8512 5.930837 TGGTTGTGGAAAATTCTCAAACT 57.069 34.783 14.93 0.00 0.00 2.66
6529 8513 7.148590 GCATATGGTTGTGGAAAATTCTCAAAC 60.149 37.037 4.56 10.36 0.00 2.93
6578 8562 0.318441 TCTTGGACGAAGGTGCTGAG 59.682 55.000 0.00 0.00 35.23 3.35
6683 8667 6.371809 TTTACATCCCTGTGAATTATTCGC 57.628 37.500 11.17 11.17 40.51 4.70
6746 8730 1.000060 GCAATGCCAAAGTCAGCAAGA 60.000 47.619 0.00 0.00 43.36 3.02
6848 8832 1.519455 CTCGTTCAGGCGGGATGTC 60.519 63.158 0.00 0.00 33.52 3.06
6891 8875 2.440569 GCAGCTCGAGCAAGACGAC 61.441 63.158 36.87 15.00 45.16 4.34
6906 8890 0.676151 GGCTTCTTCCCAGTCAGCAG 60.676 60.000 0.00 0.00 32.09 4.24
6974 8958 1.940613 GAGTGAAGGCAACGAACAAGT 59.059 47.619 0.00 0.00 46.39 3.16
6982 8966 1.072331 TCAGAAGGGAGTGAAGGCAAC 59.928 52.381 0.00 0.00 0.00 4.17
6985 8969 2.238395 AGAATCAGAAGGGAGTGAAGGC 59.762 50.000 0.00 0.00 0.00 4.35
6993 8977 2.114616 GAGCCTCAGAATCAGAAGGGA 58.885 52.381 0.00 0.00 0.00 4.20
7093 9077 5.046529 CACCACAGTGCAGATAGATCTAAC 58.953 45.833 6.52 4.00 37.14 2.34
7272 9257 9.400638 CGCTCTTATATTAGTTTACAGAGGAAG 57.599 37.037 0.00 0.00 0.00 3.46
7273 9258 8.910944 ACGCTCTTATATTAGTTTACAGAGGAA 58.089 33.333 0.00 0.00 0.00 3.36
7274 9259 8.461249 ACGCTCTTATATTAGTTTACAGAGGA 57.539 34.615 0.00 0.00 0.00 3.71
7275 9260 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
7305 9290 9.982651 AGAGCATTTAGATTACTAATTTAGCGA 57.017 29.630 3.28 0.00 38.23 4.93
7323 9308 9.490379 CCTCCGTAAACTAATATAAGAGCATTT 57.510 33.333 0.00 0.00 0.00 2.32
7324 9309 8.095169 CCCTCCGTAAACTAATATAAGAGCATT 58.905 37.037 0.00 0.00 0.00 3.56
7325 9310 7.453752 TCCCTCCGTAAACTAATATAAGAGCAT 59.546 37.037 0.00 0.00 0.00 3.79
7326 9311 6.779049 TCCCTCCGTAAACTAATATAAGAGCA 59.221 38.462 0.00 0.00 0.00 4.26
7327 9312 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
7328 9313 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
7329 9314 9.512588 CTACTCCCTCCGTAAACTAATATAAGA 57.487 37.037 0.00 0.00 0.00 2.10
7330 9315 9.294614 ACTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
7333 9318 9.072375 GTTACTACTCCCTCCGTAAACTAATAT 57.928 37.037 0.00 0.00 0.00 1.28
7334 9319 8.275040 AGTTACTACTCCCTCCGTAAACTAATA 58.725 37.037 0.00 0.00 0.00 0.98
7335 9320 7.122048 AGTTACTACTCCCTCCGTAAACTAAT 58.878 38.462 0.00 0.00 0.00 1.73
7336 9321 6.485171 AGTTACTACTCCCTCCGTAAACTAA 58.515 40.000 0.00 0.00 0.00 2.24
7337 9322 6.067217 AGTTACTACTCCCTCCGTAAACTA 57.933 41.667 0.00 0.00 0.00 2.24
7338 9323 4.928263 AGTTACTACTCCCTCCGTAAACT 58.072 43.478 0.00 0.00 0.00 2.66
7339 9324 5.883115 AGTAGTTACTACTCCCTCCGTAAAC 59.117 44.000 18.31 0.00 42.87 2.01
7340 9325 6.067217 AGTAGTTACTACTCCCTCCGTAAA 57.933 41.667 18.31 0.00 42.87 2.01
7341 9326 5.700402 AGTAGTTACTACTCCCTCCGTAA 57.300 43.478 18.31 0.00 42.87 3.18
7342 9327 5.900123 ACTAGTAGTTACTACTCCCTCCGTA 59.100 44.000 25.96 7.61 42.87 4.02
7343 9328 4.719273 ACTAGTAGTTACTACTCCCTCCGT 59.281 45.833 25.96 12.80 42.87 4.69
7344 9329 5.289083 ACTAGTAGTTACTACTCCCTCCG 57.711 47.826 25.96 12.28 42.87 4.63
7345 9330 6.328934 AGGTACTAGTAGTTACTACTCCCTCC 59.671 46.154 25.96 21.76 42.87 4.30
7346 9331 7.373617 AGGTACTAGTAGTTACTACTCCCTC 57.626 44.000 25.96 15.53 42.87 4.30
7347 9332 7.627293 AGAAGGTACTAGTAGTTACTACTCCCT 59.373 40.741 25.96 21.61 44.89 4.20
7348 9333 7.714813 CAGAAGGTACTAGTAGTTACTACTCCC 59.285 44.444 25.96 20.10 44.89 4.30
7349 9334 7.226523 GCAGAAGGTACTAGTAGTTACTACTCC 59.773 44.444 25.96 20.32 44.89 3.85
7350 9335 7.986889 AGCAGAAGGTACTAGTAGTTACTACTC 59.013 40.741 25.96 13.11 44.89 2.59
7352 9337 8.504812 AAGCAGAAGGTACTAGTAGTTACTAC 57.495 38.462 14.13 14.13 38.49 2.73
7353 9338 8.954350 CAAAGCAGAAGGTACTAGTAGTTACTA 58.046 37.037 8.40 0.00 38.49 1.82
7382 9367 7.996066 TCAAGCCAAATTACCAGCATATTAGTA 59.004 33.333 0.00 0.00 0.00 1.82
7391 9376 1.545582 TGCTCAAGCCAAATTACCAGC 59.454 47.619 0.00 0.00 41.18 4.85
7442 9430 3.420893 TGGGCATCTTACTCCAAACAAG 58.579 45.455 0.00 0.00 0.00 3.16
7471 9459 1.825090 CACAGCTGCATTGTTCCCTA 58.175 50.000 15.27 0.00 0.00 3.53
7504 9496 2.104963 AGGACAGGGAAGTTCAACAGTC 59.895 50.000 5.01 9.05 0.00 3.51
7524 9516 0.040157 CACAACCGACATTGGTGCAG 60.040 55.000 0.00 0.00 42.89 4.41
7538 9530 1.336240 GGAGCAACCAATGAGCACAAC 60.336 52.381 0.00 0.00 38.79 3.32
7540 9532 0.895100 GGGAGCAACCAATGAGCACA 60.895 55.000 2.58 0.00 41.20 4.57
7541 9533 1.598701 GGGGAGCAACCAATGAGCAC 61.599 60.000 2.58 0.00 41.20 4.40
7948 9940 1.823899 CGGAAATGCTACCCTGGCC 60.824 63.158 0.00 0.00 0.00 5.36
7964 9959 3.595709 TTTGACGAAAACAGTTAGCGG 57.404 42.857 11.15 0.00 0.00 5.52
8027 10022 5.008415 AGCAGCAGCATATTTACAGTGAATC 59.992 40.000 3.17 0.00 45.49 2.52
8028 10023 4.885907 AGCAGCAGCATATTTACAGTGAAT 59.114 37.500 3.17 0.00 45.49 2.57
8029 10024 4.264253 AGCAGCAGCATATTTACAGTGAA 58.736 39.130 3.17 0.00 45.49 3.18
8030 10025 3.873361 GAGCAGCAGCATATTTACAGTGA 59.127 43.478 3.17 0.00 45.49 3.41
8059 10054 8.770438 AAGAAGAGATAACTGACTGATGAAAC 57.230 34.615 0.00 0.00 0.00 2.78
8070 10065 5.064071 GGAAGGCGAAAAGAAGAGATAACTG 59.936 44.000 0.00 0.00 0.00 3.16
8125 10122 3.823304 ACCAGCTTCCTTTCTGTTTCATC 59.177 43.478 0.00 0.00 0.00 2.92
8128 10125 2.952310 ACACCAGCTTCCTTTCTGTTTC 59.048 45.455 0.00 0.00 0.00 2.78
8146 10155 0.818040 ACCCGTCTCCAGCAAAACAC 60.818 55.000 0.00 0.00 0.00 3.32
8148 10157 1.949257 CACCCGTCTCCAGCAAAAC 59.051 57.895 0.00 0.00 0.00 2.43
8149 10158 1.896660 GCACCCGTCTCCAGCAAAA 60.897 57.895 0.00 0.00 0.00 2.44
8151 10160 2.803155 GATGCACCCGTCTCCAGCAA 62.803 60.000 0.00 0.00 38.85 3.91
8152 10161 3.315142 GATGCACCCGTCTCCAGCA 62.315 63.158 0.00 0.00 39.79 4.41
8153 10162 2.512515 GATGCACCCGTCTCCAGC 60.513 66.667 0.00 0.00 0.00 4.85
8155 10164 3.770040 CGGATGCACCCGTCTCCA 61.770 66.667 12.80 0.00 44.23 3.86
8167 10176 4.415150 ACTGCCTGTGCCCGGATG 62.415 66.667 0.73 0.00 36.33 3.51
8168 10177 4.415150 CACTGCCTGTGCCCGGAT 62.415 66.667 0.73 0.00 40.06 4.18
8181 10190 0.385974 GCACCGTAAAAGCAGCACTG 60.386 55.000 0.00 0.00 0.00 3.66
8182 10191 1.515521 GGCACCGTAAAAGCAGCACT 61.516 55.000 0.00 0.00 0.00 4.40
8183 10192 1.081442 GGCACCGTAAAAGCAGCAC 60.081 57.895 0.00 0.00 0.00 4.40
8184 10193 1.527148 TGGCACCGTAAAAGCAGCA 60.527 52.632 0.00 0.00 0.00 4.41
8185 10194 1.081442 GTGGCACCGTAAAAGCAGC 60.081 57.895 6.29 0.00 0.00 5.25
8186 10195 0.238289 CTGTGGCACCGTAAAAGCAG 59.762 55.000 16.26 0.00 0.00 4.24
8187 10196 1.169661 CCTGTGGCACCGTAAAAGCA 61.170 55.000 16.26 0.00 0.00 3.91
8188 10197 1.579429 CCTGTGGCACCGTAAAAGC 59.421 57.895 16.26 0.00 0.00 3.51
8200 10209 2.743928 GAGCGAACAGGCCTGTGG 60.744 66.667 38.35 31.00 44.13 4.17
8201 10210 2.031012 TGAGCGAACAGGCCTGTG 59.969 61.111 38.35 26.92 44.13 3.66
8203 10212 1.302033 AACTGAGCGAACAGGCCTG 60.302 57.895 31.60 31.60 41.59 4.85
8204 10213 1.302033 CAACTGAGCGAACAGGCCT 60.302 57.895 0.00 0.00 41.59 5.19
8205 10214 2.328099 CCAACTGAGCGAACAGGCC 61.328 63.158 0.00 0.00 41.59 5.19
8206 10215 2.328099 CCCAACTGAGCGAACAGGC 61.328 63.158 12.45 0.00 41.59 4.85
8207 10216 0.951040 GTCCCAACTGAGCGAACAGG 60.951 60.000 12.45 0.00 41.59 4.00
8208 10217 1.284982 CGTCCCAACTGAGCGAACAG 61.285 60.000 7.54 7.54 42.78 3.16
8209 10218 1.300620 CGTCCCAACTGAGCGAACA 60.301 57.895 0.00 0.00 0.00 3.18
8210 10219 1.006571 TCGTCCCAACTGAGCGAAC 60.007 57.895 0.00 0.00 0.00 3.95
8211 10220 1.006571 GTCGTCCCAACTGAGCGAA 60.007 57.895 0.00 0.00 33.30 4.70
8212 10221 2.197605 TGTCGTCCCAACTGAGCGA 61.198 57.895 0.00 0.00 0.00 4.93
8213 10222 2.022129 GTGTCGTCCCAACTGAGCG 61.022 63.158 0.00 0.00 0.00 5.03
8214 10223 0.320771 ATGTGTCGTCCCAACTGAGC 60.321 55.000 0.00 0.00 0.00 4.26
8215 10224 2.231478 AGTATGTGTCGTCCCAACTGAG 59.769 50.000 0.00 0.00 0.00 3.35
8216 10225 2.029380 CAGTATGTGTCGTCCCAACTGA 60.029 50.000 0.00 0.00 35.93 3.41
8217 10226 2.337583 CAGTATGTGTCGTCCCAACTG 58.662 52.381 0.00 0.00 0.00 3.16
8218 10227 2.743636 CAGTATGTGTCGTCCCAACT 57.256 50.000 0.00 0.00 0.00 3.16
8252 10261 3.146066 GGAGGCTGTTCATACAACAACA 58.854 45.455 0.00 0.00 32.92 3.33
8253 10262 3.058224 GTGGAGGCTGTTCATACAACAAC 60.058 47.826 0.00 0.00 32.92 3.32
8254 10263 3.146066 GTGGAGGCTGTTCATACAACAA 58.854 45.455 0.00 0.00 32.92 2.83
8255 10264 2.552155 GGTGGAGGCTGTTCATACAACA 60.552 50.000 0.00 0.00 32.92 3.33
8256 10265 2.084546 GGTGGAGGCTGTTCATACAAC 58.915 52.381 0.00 0.00 32.92 3.32
8257 10266 1.702401 TGGTGGAGGCTGTTCATACAA 59.298 47.619 0.00 0.00 32.92 2.41
8258 10267 1.357137 TGGTGGAGGCTGTTCATACA 58.643 50.000 0.00 0.00 0.00 2.29
8259 10268 2.489938 TTGGTGGAGGCTGTTCATAC 57.510 50.000 0.00 0.00 0.00 2.39
8260 10269 2.419990 CGATTGGTGGAGGCTGTTCATA 60.420 50.000 0.00 0.00 0.00 2.15
8261 10270 1.679944 CGATTGGTGGAGGCTGTTCAT 60.680 52.381 0.00 0.00 0.00 2.57
8262 10271 0.321564 CGATTGGTGGAGGCTGTTCA 60.322 55.000 0.00 0.00 0.00 3.18
8263 10272 0.036388 TCGATTGGTGGAGGCTGTTC 60.036 55.000 0.00 0.00 0.00 3.18
8264 10273 0.400213 TTCGATTGGTGGAGGCTGTT 59.600 50.000 0.00 0.00 0.00 3.16
8265 10274 0.400213 TTTCGATTGGTGGAGGCTGT 59.600 50.000 0.00 0.00 0.00 4.40
8266 10275 1.755179 ATTTCGATTGGTGGAGGCTG 58.245 50.000 0.00 0.00 0.00 4.85
8267 10276 2.505819 AGTATTTCGATTGGTGGAGGCT 59.494 45.455 0.00 0.00 0.00 4.58
8268 10277 2.614057 CAGTATTTCGATTGGTGGAGGC 59.386 50.000 0.00 0.00 0.00 4.70
8269 10278 2.614057 GCAGTATTTCGATTGGTGGAGG 59.386 50.000 0.00 0.00 0.00 4.30
8270 10279 3.310774 CAGCAGTATTTCGATTGGTGGAG 59.689 47.826 0.00 0.00 35.90 3.86
8271 10280 3.270027 CAGCAGTATTTCGATTGGTGGA 58.730 45.455 0.00 0.00 35.90 4.02
8272 10281 3.680642 CAGCAGTATTTCGATTGGTGG 57.319 47.619 0.00 0.00 35.90 4.61
8273 10282 2.355756 CCCAGCAGTATTTCGATTGGTG 59.644 50.000 0.00 0.00 38.42 4.17
8274 10283 2.026262 ACCCAGCAGTATTTCGATTGGT 60.026 45.455 0.00 0.00 0.00 3.67
8275 10284 2.643551 ACCCAGCAGTATTTCGATTGG 58.356 47.619 0.00 0.00 0.00 3.16
8276 10285 4.693283 TCTACCCAGCAGTATTTCGATTG 58.307 43.478 0.00 0.00 0.00 2.67
8377 10386 0.464036 TGCCGTGGCTACTTATCCAG 59.536 55.000 12.84 0.00 42.51 3.86
8378 10387 1.128200 ATGCCGTGGCTACTTATCCA 58.872 50.000 12.84 0.00 42.51 3.41
8379 10388 1.512926 CATGCCGTGGCTACTTATCC 58.487 55.000 12.84 0.00 42.51 2.59
8408 10428 0.539986 GGAATTCCTCGGCACTACCA 59.460 55.000 17.73 0.00 39.03 3.25
8428 10448 6.694447 ACGTAGATTTTACTGCAAAGAGGTA 58.306 36.000 0.00 0.00 0.00 3.08
8430 10450 6.812160 AGTACGTAGATTTTACTGCAAAGAGG 59.188 38.462 0.00 0.00 0.00 3.69
8492 10512 0.461135 CTTTGGCCCCATGCATGTAC 59.539 55.000 24.58 13.21 43.89 2.90
8493 10513 1.329171 GCTTTGGCCCCATGCATGTA 61.329 55.000 24.58 3.62 43.89 2.29
8494 10514 2.662070 GCTTTGGCCCCATGCATGT 61.662 57.895 24.58 0.00 43.89 3.21
8495 10515 1.906105 AAGCTTTGGCCCCATGCATG 61.906 55.000 20.19 20.19 43.89 4.06
8496 10516 0.325484 TAAGCTTTGGCCCCATGCAT 60.325 50.000 3.20 0.00 43.89 3.96
8497 10517 0.325484 ATAAGCTTTGGCCCCATGCA 60.325 50.000 3.20 0.00 43.89 3.96
8498 10518 0.105408 CATAAGCTTTGGCCCCATGC 59.895 55.000 3.20 0.43 39.73 4.06
8499 10519 0.754472 CCATAAGCTTTGGCCCCATG 59.246 55.000 3.20 0.00 39.73 3.66
8500 10520 0.398948 CCCATAAGCTTTGGCCCCAT 60.399 55.000 17.37 0.00 39.73 4.00
8501 10521 1.001503 CCCATAAGCTTTGGCCCCA 59.998 57.895 17.37 0.00 39.73 4.96
8502 10522 1.001631 ACCCATAAGCTTTGGCCCC 59.998 57.895 17.37 0.00 39.73 5.80
8503 10523 0.614697 ACACCCATAAGCTTTGGCCC 60.615 55.000 17.37 0.00 39.73 5.80
8504 10524 0.532115 CACACCCATAAGCTTTGGCC 59.468 55.000 17.37 0.00 39.73 5.36
8505 10525 1.256812 ACACACCCATAAGCTTTGGC 58.743 50.000 17.37 0.00 39.06 4.52
8506 10526 3.554752 CCAAACACACCCATAAGCTTTGG 60.555 47.826 3.20 12.13 32.52 3.28
8507 10527 3.069443 ACCAAACACACCCATAAGCTTTG 59.931 43.478 3.20 0.00 0.00 2.77
8508 10528 3.304829 ACCAAACACACCCATAAGCTTT 58.695 40.909 3.20 0.00 0.00 3.51
8509 10529 2.957474 ACCAAACACACCCATAAGCTT 58.043 42.857 3.48 3.48 0.00 3.74
8510 10530 2.675658 ACCAAACACACCCATAAGCT 57.324 45.000 0.00 0.00 0.00 3.74
8511 10531 2.163613 GCTACCAAACACACCCATAAGC 59.836 50.000 0.00 0.00 0.00 3.09
8512 10532 3.417101 TGCTACCAAACACACCCATAAG 58.583 45.455 0.00 0.00 0.00 1.73
8513 10533 3.510531 TGCTACCAAACACACCCATAA 57.489 42.857 0.00 0.00 0.00 1.90
8514 10534 3.351740 CATGCTACCAAACACACCCATA 58.648 45.455 0.00 0.00 0.00 2.74
8515 10535 2.170166 CATGCTACCAAACACACCCAT 58.830 47.619 0.00 0.00 0.00 4.00
8516 10536 1.614996 CATGCTACCAAACACACCCA 58.385 50.000 0.00 0.00 0.00 4.51
8540 10560 4.929146 ACTTTTGGGCCTATACACTCTT 57.071 40.909 4.53 0.00 0.00 2.85
8843 10887 3.607370 AAGAAGGAAGCGGACCGGC 62.607 63.158 17.22 8.14 0.00 6.13
8844 10888 1.448013 GAAGAAGGAAGCGGACCGG 60.448 63.158 17.22 0.00 0.00 5.28
8845 10889 0.320421 TTGAAGAAGGAAGCGGACCG 60.320 55.000 10.29 10.29 0.00 4.79
8846 10890 1.157585 GTTGAAGAAGGAAGCGGACC 58.842 55.000 0.00 0.00 0.00 4.46
8847 10891 1.157585 GGTTGAAGAAGGAAGCGGAC 58.842 55.000 0.00 0.00 0.00 4.79
8848 10892 1.002087 GAGGTTGAAGAAGGAAGCGGA 59.998 52.381 0.00 0.00 0.00 5.54
8849 10893 1.002544 AGAGGTTGAAGAAGGAAGCGG 59.997 52.381 0.00 0.00 0.00 5.52
8850 10894 2.342179 GAGAGGTTGAAGAAGGAAGCG 58.658 52.381 0.00 0.00 0.00 4.68
8851 10895 2.342179 CGAGAGGTTGAAGAAGGAAGC 58.658 52.381 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.