Multiple sequence alignment - TraesCS6A01G336100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G336100 chr6A 100.000 3295 0 0 1 3295 569389424 569392718 0.000000e+00 6085.0
1 TraesCS6A01G336100 chr6B 93.086 781 48 1 995 1769 640330348 640329568 0.000000e+00 1138.0
2 TraesCS6A01G336100 chr6B 92.676 355 15 3 1765 2116 640327905 640327559 4.910000e-138 501.0
3 TraesCS6A01G336100 chr6B 86.885 183 7 7 835 1004 640331953 640331775 4.340000e-44 189.0
4 TraesCS6A01G336100 chr3D 91.256 812 60 9 1 808 500604018 500603214 0.000000e+00 1096.0
5 TraesCS6A01G336100 chr3D 91.144 813 61 7 1 808 610719663 610720469 0.000000e+00 1092.0
6 TraesCS6A01G336100 chr3D 77.538 1251 187 46 1010 2223 586104592 586103399 0.000000e+00 667.0
7 TraesCS6A01G336100 chr3D 74.853 1189 197 67 1007 2167 551624363 551625477 2.330000e-121 446.0
8 TraesCS6A01G336100 chr3D 74.097 1108 190 45 1184 2264 551574848 551575885 1.870000e-97 366.0
9 TraesCS6A01G336100 chr6D 91.021 813 61 7 1 808 67694006 67693201 0.000000e+00 1086.0
10 TraesCS6A01G336100 chr6D 87.500 880 52 14 835 1673 424711737 424710875 0.000000e+00 963.0
11 TraesCS6A01G336100 chr6D 84.626 696 92 11 2532 3222 307109973 307109288 0.000000e+00 678.0
12 TraesCS6A01G336100 chr6D 92.042 289 15 1 1668 1956 424709325 424709045 1.840000e-107 399.0
13 TraesCS6A01G336100 chr6D 87.115 357 32 6 1407 1763 424728168 424727826 3.080000e-105 392.0
14 TraesCS6A01G336100 chr5D 91.021 813 61 8 1 808 526658170 526658975 0.000000e+00 1086.0
15 TraesCS6A01G336100 chr5D 77.504 1258 180 62 1008 2222 506163279 506162082 0.000000e+00 660.0
16 TraesCS6A01G336100 chr4D 91.111 810 60 9 1 808 86594900 86594101 0.000000e+00 1086.0
17 TraesCS6A01G336100 chr4D 90.752 811 66 5 1 808 47248320 47249124 0.000000e+00 1074.0
18 TraesCS6A01G336100 chr7D 90.652 813 63 9 1 808 34179567 34178763 0.000000e+00 1068.0
19 TraesCS6A01G336100 chr5B 90.342 818 59 16 1 808 712176792 712177599 0.000000e+00 1055.0
20 TraesCS6A01G336100 chr5B 78.202 1257 185 55 1008 2222 636901915 636900706 0.000000e+00 721.0
21 TraesCS6A01G336100 chr4A 90.123 810 70 6 1 808 510885505 510886306 0.000000e+00 1044.0
22 TraesCS6A01G336100 chr4A 96.078 51 2 0 3217 3267 739161852 739161802 2.110000e-12 84.2
23 TraesCS6A01G336100 chr2D 89.935 616 53 6 2532 3143 346152825 346153435 0.000000e+00 785.0
24 TraesCS6A01G336100 chr7B 86.305 701 80 12 2532 3222 332816361 332817055 0.000000e+00 749.0
25 TraesCS6A01G336100 chr7B 88.291 632 62 8 2520 3143 97862206 97862833 0.000000e+00 747.0
26 TraesCS6A01G336100 chr7B 85.960 698 83 10 2532 3222 57189492 57190181 0.000000e+00 732.0
27 TraesCS6A01G336100 chr1D 86.826 668 76 8 2481 3143 469551795 469552455 0.000000e+00 736.0
28 TraesCS6A01G336100 chr5A 85.877 701 82 13 2532 3222 7596936 7597629 0.000000e+00 730.0
29 TraesCS6A01G336100 chrUn 86.156 679 76 12 2537 3207 171689199 171689867 0.000000e+00 717.0
30 TraesCS6A01G336100 chr4B 84.692 699 91 11 2532 3222 44946216 44946906 0.000000e+00 684.0
31 TraesCS6A01G336100 chr3B 75.321 1248 212 50 1009 2218 732110635 732111824 8.160000e-141 510.0
32 TraesCS6A01G336100 chr3B 78.404 639 107 19 1009 1633 732886259 732885638 1.430000e-103 387.0
33 TraesCS6A01G336100 chr3B 77.462 528 78 27 1746 2264 732885519 732885024 9.000000e-71 278.0
34 TraesCS6A01G336100 chr3B 78.178 472 69 15 1756 2223 732156507 732156948 1.510000e-68 270.0
35 TraesCS6A01G336100 chr1B 96.078 51 2 0 3217 3267 102845958 102846008 2.110000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G336100 chr6A 569389424 569392718 3294 False 6085.000000 6085 100.000000 1 3295 1 chr6A.!!$F1 3294
1 TraesCS6A01G336100 chr6B 640327559 640331953 4394 True 609.333333 1138 90.882333 835 2116 3 chr6B.!!$R1 1281
2 TraesCS6A01G336100 chr3D 500603214 500604018 804 True 1096.000000 1096 91.256000 1 808 1 chr3D.!!$R1 807
3 TraesCS6A01G336100 chr3D 610719663 610720469 806 False 1092.000000 1092 91.144000 1 808 1 chr3D.!!$F3 807
4 TraesCS6A01G336100 chr3D 586103399 586104592 1193 True 667.000000 667 77.538000 1010 2223 1 chr3D.!!$R2 1213
5 TraesCS6A01G336100 chr3D 551624363 551625477 1114 False 446.000000 446 74.853000 1007 2167 1 chr3D.!!$F2 1160
6 TraesCS6A01G336100 chr3D 551574848 551575885 1037 False 366.000000 366 74.097000 1184 2264 1 chr3D.!!$F1 1080
7 TraesCS6A01G336100 chr6D 67693201 67694006 805 True 1086.000000 1086 91.021000 1 808 1 chr6D.!!$R1 807
8 TraesCS6A01G336100 chr6D 424709045 424711737 2692 True 681.000000 963 89.771000 835 1956 2 chr6D.!!$R4 1121
9 TraesCS6A01G336100 chr6D 307109288 307109973 685 True 678.000000 678 84.626000 2532 3222 1 chr6D.!!$R2 690
10 TraesCS6A01G336100 chr5D 526658170 526658975 805 False 1086.000000 1086 91.021000 1 808 1 chr5D.!!$F1 807
11 TraesCS6A01G336100 chr5D 506162082 506163279 1197 True 660.000000 660 77.504000 1008 2222 1 chr5D.!!$R1 1214
12 TraesCS6A01G336100 chr4D 86594101 86594900 799 True 1086.000000 1086 91.111000 1 808 1 chr4D.!!$R1 807
13 TraesCS6A01G336100 chr4D 47248320 47249124 804 False 1074.000000 1074 90.752000 1 808 1 chr4D.!!$F1 807
14 TraesCS6A01G336100 chr7D 34178763 34179567 804 True 1068.000000 1068 90.652000 1 808 1 chr7D.!!$R1 807
15 TraesCS6A01G336100 chr5B 712176792 712177599 807 False 1055.000000 1055 90.342000 1 808 1 chr5B.!!$F1 807
16 TraesCS6A01G336100 chr5B 636900706 636901915 1209 True 721.000000 721 78.202000 1008 2222 1 chr5B.!!$R1 1214
17 TraesCS6A01G336100 chr4A 510885505 510886306 801 False 1044.000000 1044 90.123000 1 808 1 chr4A.!!$F1 807
18 TraesCS6A01G336100 chr2D 346152825 346153435 610 False 785.000000 785 89.935000 2532 3143 1 chr2D.!!$F1 611
19 TraesCS6A01G336100 chr7B 332816361 332817055 694 False 749.000000 749 86.305000 2532 3222 1 chr7B.!!$F3 690
20 TraesCS6A01G336100 chr7B 97862206 97862833 627 False 747.000000 747 88.291000 2520 3143 1 chr7B.!!$F2 623
21 TraesCS6A01G336100 chr7B 57189492 57190181 689 False 732.000000 732 85.960000 2532 3222 1 chr7B.!!$F1 690
22 TraesCS6A01G336100 chr1D 469551795 469552455 660 False 736.000000 736 86.826000 2481 3143 1 chr1D.!!$F1 662
23 TraesCS6A01G336100 chr5A 7596936 7597629 693 False 730.000000 730 85.877000 2532 3222 1 chr5A.!!$F1 690
24 TraesCS6A01G336100 chrUn 171689199 171689867 668 False 717.000000 717 86.156000 2537 3207 1 chrUn.!!$F1 670
25 TraesCS6A01G336100 chr4B 44946216 44946906 690 False 684.000000 684 84.692000 2532 3222 1 chr4B.!!$F1 690
26 TraesCS6A01G336100 chr3B 732110635 732111824 1189 False 510.000000 510 75.321000 1009 2218 1 chr3B.!!$F1 1209
27 TraesCS6A01G336100 chr3B 732885024 732886259 1235 True 332.500000 387 77.933000 1009 2264 2 chr3B.!!$R1 1255

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
822 835 0.231279 CGTTCAGCGCGTGTACTTTT 59.769 50.0 8.43 0.0 0.0 2.27 F
1674 4744 0.322997 CAAACATACCCCTGCCGGAA 60.323 55.0 5.05 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2118 6900 0.032813 ATGCCCAGCCAGCTGTTAAT 60.033 50.0 17.86 5.77 42.15 1.40 R
3221 8337 0.167470 TGGCGAAGAGAAGTACGTCG 59.833 55.0 3.05 0.00 40.77 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 0.530650 CGCGAGGCTACAATCCACAT 60.531 55.000 0.00 0.00 0.00 3.21
84 85 0.836400 GTGAACCACTCCTCCTCCCA 60.836 60.000 0.00 0.00 0.00 4.37
135 136 1.961180 CTCTCCCCCTACTGCAACGG 61.961 65.000 0.00 0.00 0.00 4.44
336 337 0.878961 GGAAAACGTGCGACCTCACT 60.879 55.000 0.00 0.00 34.92 3.41
370 373 0.250338 GGGCGAGTGGAGAAACAAGT 60.250 55.000 0.00 0.00 0.00 3.16
433 437 4.712425 CCGCGAACGACGACCCTT 62.712 66.667 8.23 0.00 45.77 3.95
588 600 2.358984 GAAACCGCCGCCCACTAA 60.359 61.111 0.00 0.00 0.00 2.24
589 601 1.967494 GAAACCGCCGCCCACTAAA 60.967 57.895 0.00 0.00 0.00 1.85
662 675 4.029287 GGGAGGTTTATCTCGCGC 57.971 61.111 0.00 0.00 37.07 6.86
663 676 1.949631 GGGAGGTTTATCTCGCGCG 60.950 63.158 26.76 26.76 37.07 6.86
740 753 1.296715 GCTCCACCACTCGACCAAT 59.703 57.895 0.00 0.00 0.00 3.16
757 770 1.149101 AATGAACACCTGGACACCCT 58.851 50.000 0.00 0.00 0.00 4.34
763 776 4.641645 CCTGGACACCCTGCGCAA 62.642 66.667 13.05 0.00 0.00 4.85
809 822 3.479269 GTTCGGCCGCTCGTTCAG 61.479 66.667 23.51 0.00 0.00 3.02
817 830 2.803670 GCTCGTTCAGCGCGTGTA 60.804 61.111 8.43 0.00 38.76 2.90
818 831 3.055905 GCTCGTTCAGCGCGTGTAC 62.056 63.158 8.43 8.06 38.76 2.90
819 832 1.442184 CTCGTTCAGCGCGTGTACT 60.442 57.895 8.43 0.00 41.07 2.73
820 833 1.002250 CTCGTTCAGCGCGTGTACTT 61.002 55.000 8.43 0.00 41.07 2.24
821 834 0.595567 TCGTTCAGCGCGTGTACTTT 60.596 50.000 8.43 0.00 41.07 2.66
822 835 0.231279 CGTTCAGCGCGTGTACTTTT 59.769 50.000 8.43 0.00 0.00 2.27
823 836 1.332552 CGTTCAGCGCGTGTACTTTTT 60.333 47.619 8.43 0.00 0.00 1.94
824 837 2.097299 CGTTCAGCGCGTGTACTTTTTA 60.097 45.455 8.43 0.00 0.00 1.52
825 838 3.466836 GTTCAGCGCGTGTACTTTTTAG 58.533 45.455 8.43 0.00 0.00 1.85
826 839 2.063266 TCAGCGCGTGTACTTTTTAGG 58.937 47.619 8.43 0.00 0.00 2.69
827 840 1.796459 CAGCGCGTGTACTTTTTAGGT 59.204 47.619 8.43 0.00 0.00 3.08
828 841 2.222445 CAGCGCGTGTACTTTTTAGGTT 59.778 45.455 8.43 0.00 0.00 3.50
829 842 2.874086 AGCGCGTGTACTTTTTAGGTTT 59.126 40.909 8.43 0.00 0.00 3.27
830 843 3.313249 AGCGCGTGTACTTTTTAGGTTTT 59.687 39.130 8.43 0.00 0.00 2.43
831 844 4.511082 AGCGCGTGTACTTTTTAGGTTTTA 59.489 37.500 8.43 0.00 0.00 1.52
832 845 4.842376 GCGCGTGTACTTTTTAGGTTTTAG 59.158 41.667 8.43 0.00 0.00 1.85
833 846 5.376537 CGCGTGTACTTTTTAGGTTTTAGG 58.623 41.667 0.00 0.00 0.00 2.69
837 850 6.854381 CGTGTACTTTTTAGGTTTTAGGCAAG 59.146 38.462 0.00 0.00 0.00 4.01
854 867 2.820330 CAAGTTGTTTTCCGGCACATT 58.180 42.857 0.00 0.00 0.00 2.71
874 887 7.361201 GCACATTCTTAATTGAGTGAGCTGTAA 60.361 37.037 0.00 0.00 37.33 2.41
913 926 1.079503 AAAGGACAAGAATCGCGAGC 58.920 50.000 16.66 9.48 0.00 5.03
960 976 1.737793 GTACTTCCCATTTGCACGAGG 59.262 52.381 0.00 0.00 0.00 4.63
962 978 0.962356 CTTCCCATTTGCACGAGGCT 60.962 55.000 0.00 0.00 45.15 4.58
963 979 1.243342 TTCCCATTTGCACGAGGCTG 61.243 55.000 0.00 0.00 45.15 4.85
964 980 1.675310 CCCATTTGCACGAGGCTGA 60.675 57.895 0.00 0.00 45.15 4.26
991 1030 1.577736 AGAGGTGAAGGTGATGGAGG 58.422 55.000 0.00 0.00 0.00 4.30
992 1031 1.079490 AGAGGTGAAGGTGATGGAGGA 59.921 52.381 0.00 0.00 0.00 3.71
1003 2475 2.993008 TGGAGGACTCCTGCATGC 59.007 61.111 15.05 11.82 46.73 4.06
1116 2588 2.194597 GTCAACAGGGGCCACACA 59.805 61.111 8.31 0.00 0.00 3.72
1121 2593 4.263572 CAGGGGCCACACACCGAA 62.264 66.667 8.31 0.00 0.00 4.30
1136 2608 2.485426 CACCGAACGTCTACTTCTACCA 59.515 50.000 0.00 0.00 0.00 3.25
1221 2705 3.537874 CCCTTCTACCCCCTCGCG 61.538 72.222 0.00 0.00 0.00 5.87
1369 2856 3.839432 GGAGGCTCTTCGTCCCCG 61.839 72.222 15.23 0.00 42.47 5.73
1419 2915 2.158755 CCAGGTGACCTTCTTCAAGTGT 60.159 50.000 0.00 0.00 0.00 3.55
1486 2982 1.080093 CTAAGCGCGGTCCACTTCA 60.080 57.895 12.91 0.00 0.00 3.02
1522 3019 3.539593 TTCTCCAGAGACGGGGCCA 62.540 63.158 4.39 0.00 37.14 5.36
1666 3166 1.913778 AAACGACCCAAACATACCCC 58.086 50.000 0.00 0.00 0.00 4.95
1674 4744 0.322997 CAAACATACCCCTGCCGGAA 60.323 55.000 5.05 0.00 0.00 4.30
1716 4792 7.274686 GTCAACGAGATTTTTGTTCTTTCCAAA 59.725 33.333 0.00 0.00 30.68 3.28
1722 4798 7.041721 AGATTTTTGTTCTTTCCAAAGACCAC 58.958 34.615 1.04 0.00 44.18 4.16
2120 6902 2.496817 GCGACGGAGCTGAGGATT 59.503 61.111 0.00 0.00 0.00 3.01
2122 6904 0.102481 GCGACGGAGCTGAGGATTAA 59.898 55.000 0.00 0.00 0.00 1.40
2223 7005 3.111939 CAGGGCTCGTCTACCTCG 58.888 66.667 0.00 0.00 30.66 4.63
2224 7006 2.829458 AGGGCTCGTCTACCTCGC 60.829 66.667 0.00 0.00 0.00 5.03
2225 7007 3.902086 GGGCTCGTCTACCTCGCC 61.902 72.222 0.00 0.00 39.98 5.54
2229 7011 2.046988 TCGTCTACCTCGCCGACA 60.047 61.111 0.00 0.00 0.00 4.35
2230 7012 1.642037 CTCGTCTACCTCGCCGACAA 61.642 60.000 0.00 0.00 0.00 3.18
2232 7014 1.513586 GTCTACCTCGCCGACAACG 60.514 63.158 0.00 0.00 39.43 4.10
2274 7056 2.282958 TCGTGTCCGAGCCTTCCT 60.283 61.111 0.00 0.00 38.40 3.36
2275 7057 2.182030 CGTGTCCGAGCCTTCCTC 59.818 66.667 0.00 0.00 37.22 3.71
2283 7065 1.139947 GAGCCTTCCTCGGTTCTCG 59.860 63.158 0.00 0.00 40.90 4.04
2284 7066 1.304217 AGCCTTCCTCGGTTCTCGA 60.304 57.895 0.00 0.00 46.77 4.04
2293 7075 1.996292 TCGGTTCTCGAAGCATTCTG 58.004 50.000 9.22 0.00 45.86 3.02
2294 7076 1.544246 TCGGTTCTCGAAGCATTCTGA 59.456 47.619 9.22 0.00 45.86 3.27
2295 7077 2.029380 TCGGTTCTCGAAGCATTCTGAA 60.029 45.455 9.22 0.00 45.86 3.02
2296 7078 2.932614 CGGTTCTCGAAGCATTCTGAAT 59.067 45.455 9.22 0.00 44.75 2.57
2297 7079 4.112634 CGGTTCTCGAAGCATTCTGAATA 58.887 43.478 1.98 0.00 44.75 1.75
2298 7080 4.566759 CGGTTCTCGAAGCATTCTGAATAA 59.433 41.667 1.98 0.00 44.75 1.40
2299 7081 5.063438 CGGTTCTCGAAGCATTCTGAATAAA 59.937 40.000 1.98 0.00 44.75 1.40
2300 7082 6.402118 CGGTTCTCGAAGCATTCTGAATAAAA 60.402 38.462 1.98 0.00 44.75 1.52
2301 7083 7.475840 GGTTCTCGAAGCATTCTGAATAAAAT 58.524 34.615 1.98 0.00 44.75 1.82
2302 7084 8.612619 GGTTCTCGAAGCATTCTGAATAAAATA 58.387 33.333 1.98 0.00 44.75 1.40
2303 7085 9.988350 GTTCTCGAAGCATTCTGAATAAAATAA 57.012 29.630 1.98 0.00 44.75 1.40
2305 7087 8.830580 TCTCGAAGCATTCTGAATAAAATAAGG 58.169 33.333 1.98 0.00 44.75 2.69
2306 7088 7.930217 TCGAAGCATTCTGAATAAAATAAGGG 58.070 34.615 1.98 0.00 44.75 3.95
2307 7089 6.638468 CGAAGCATTCTGAATAAAATAAGGGC 59.362 38.462 1.98 0.00 44.75 5.19
2308 7090 6.076981 AGCATTCTGAATAAAATAAGGGCG 57.923 37.500 1.98 0.00 0.00 6.13
2309 7091 5.827797 AGCATTCTGAATAAAATAAGGGCGA 59.172 36.000 1.98 0.00 0.00 5.54
2310 7092 6.321181 AGCATTCTGAATAAAATAAGGGCGAA 59.679 34.615 1.98 0.00 0.00 4.70
2311 7093 7.014615 AGCATTCTGAATAAAATAAGGGCGAAT 59.985 33.333 1.98 0.00 0.00 3.34
2312 7094 8.296713 GCATTCTGAATAAAATAAGGGCGAATA 58.703 33.333 1.98 0.00 0.00 1.75
2323 7105 4.813296 AAGGGCGAATAAAATAAGAGCG 57.187 40.909 0.00 0.00 0.00 5.03
2324 7106 3.805207 AGGGCGAATAAAATAAGAGCGT 58.195 40.909 0.00 0.00 0.00 5.07
2325 7107 3.560068 AGGGCGAATAAAATAAGAGCGTG 59.440 43.478 0.00 0.00 0.00 5.34
2326 7108 3.311596 GGGCGAATAAAATAAGAGCGTGT 59.688 43.478 0.00 0.00 0.00 4.49
2327 7109 4.515432 GGCGAATAAAATAAGAGCGTGTC 58.485 43.478 0.00 0.00 0.00 3.67
2328 7110 4.270325 GGCGAATAAAATAAGAGCGTGTCT 59.730 41.667 0.00 0.00 36.94 3.41
2329 7111 5.461078 GGCGAATAAAATAAGAGCGTGTCTA 59.539 40.000 0.00 0.00 32.65 2.59
2330 7112 6.345882 GGCGAATAAAATAAGAGCGTGTCTAG 60.346 42.308 0.00 0.00 32.65 2.43
2331 7113 6.573358 CGAATAAAATAAGAGCGTGTCTAGC 58.427 40.000 0.00 0.00 32.65 3.42
2333 7115 7.470289 AATAAAATAAGAGCGTGTCTAGCTG 57.530 36.000 0.00 0.00 46.13 4.24
2334 7116 3.444703 AATAAGAGCGTGTCTAGCTGG 57.555 47.619 0.00 0.00 46.13 4.85
2335 7117 0.456221 TAAGAGCGTGTCTAGCTGGC 59.544 55.000 0.00 0.00 46.13 4.85
2336 7118 2.549611 AAGAGCGTGTCTAGCTGGCG 62.550 60.000 0.00 0.00 46.13 5.69
2337 7119 4.135153 AGCGTGTCTAGCTGGCGG 62.135 66.667 0.00 0.00 44.22 6.13
2340 7122 4.082523 GTGTCTAGCTGGCGGCCA 62.083 66.667 22.39 22.39 43.05 5.36
2354 7136 3.782042 GCCAGAGGCTCGTTAACG 58.218 61.111 21.85 21.85 46.69 3.18
2355 7137 1.080025 GCCAGAGGCTCGTTAACGT 60.080 57.895 25.98 8.24 46.69 3.99
2356 7138 0.669625 GCCAGAGGCTCGTTAACGTT 60.670 55.000 25.98 5.88 46.69 3.99
2357 7139 1.347320 CCAGAGGCTCGTTAACGTTC 58.653 55.000 25.98 18.03 40.80 3.95
2358 7140 0.982673 CAGAGGCTCGTTAACGTTCG 59.017 55.000 25.98 16.61 40.80 3.95
2359 7141 0.731855 AGAGGCTCGTTAACGTTCGC 60.732 55.000 25.98 23.65 40.80 4.70
2361 7143 2.082366 GGCTCGTTAACGTTCGCGA 61.082 57.895 25.98 20.54 44.71 5.87
2363 7145 1.336164 CTCGTTAACGTTCGCGAGC 59.664 57.895 28.51 13.46 43.02 5.03
2364 7146 2.016423 CGTTAACGTTCGCGAGCG 59.984 61.111 37.70 37.70 44.71 5.03
2365 7147 2.389143 GTTAACGTTCGCGAGCGG 59.611 61.111 40.44 25.99 44.71 5.52
2366 7148 3.472298 TTAACGTTCGCGAGCGGC 61.472 61.111 40.44 18.45 44.71 6.53
2375 7157 3.095032 GCGAGCGGCGGATAAAAA 58.905 55.556 9.78 0.00 41.29 1.94
2393 7175 1.523758 AAAAGTAAGCGCCTGTCTGG 58.476 50.000 2.29 0.00 39.35 3.86
2394 7176 0.396811 AAAGTAAGCGCCTGTCTGGT 59.603 50.000 2.29 0.00 38.35 4.00
2395 7177 0.037232 AAGTAAGCGCCTGTCTGGTC 60.037 55.000 2.29 0.00 38.35 4.02
2396 7178 0.900647 AGTAAGCGCCTGTCTGGTCT 60.901 55.000 2.29 0.00 38.35 3.85
2397 7179 0.815734 GTAAGCGCCTGTCTGGTCTA 59.184 55.000 2.29 0.00 38.35 2.59
2398 7180 1.103803 TAAGCGCCTGTCTGGTCTAG 58.896 55.000 2.29 0.00 38.35 2.43
2399 7181 0.612174 AAGCGCCTGTCTGGTCTAGA 60.612 55.000 2.29 0.00 38.35 2.43
2400 7182 0.612174 AGCGCCTGTCTGGTCTAGAA 60.612 55.000 2.29 0.00 37.12 2.10
2401 7183 0.246635 GCGCCTGTCTGGTCTAGAAA 59.753 55.000 0.00 0.00 37.12 2.52
2402 7184 1.337823 GCGCCTGTCTGGTCTAGAAAA 60.338 52.381 0.00 0.00 37.12 2.29
2403 7185 2.611518 CGCCTGTCTGGTCTAGAAAAG 58.388 52.381 0.00 0.00 37.12 2.27
2404 7186 2.028930 CGCCTGTCTGGTCTAGAAAAGT 60.029 50.000 0.00 0.00 37.12 2.66
2405 7187 3.192844 CGCCTGTCTGGTCTAGAAAAGTA 59.807 47.826 0.00 0.00 37.12 2.24
2406 7188 4.321750 CGCCTGTCTGGTCTAGAAAAGTAA 60.322 45.833 0.00 0.00 37.12 2.24
2407 7189 5.624738 CGCCTGTCTGGTCTAGAAAAGTAAT 60.625 44.000 0.00 0.00 37.12 1.89
2408 7190 6.405508 CGCCTGTCTGGTCTAGAAAAGTAATA 60.406 42.308 0.00 0.00 37.12 0.98
2409 7191 7.501844 GCCTGTCTGGTCTAGAAAAGTAATAT 58.498 38.462 0.00 0.00 37.12 1.28
2410 7192 7.439655 GCCTGTCTGGTCTAGAAAAGTAATATG 59.560 40.741 0.00 0.00 37.12 1.78
2411 7193 8.478877 CCTGTCTGGTCTAGAAAAGTAATATGT 58.521 37.037 0.00 0.00 37.12 2.29
2412 7194 9.522804 CTGTCTGGTCTAGAAAAGTAATATGTC 57.477 37.037 0.00 0.00 37.12 3.06
2413 7195 9.256228 TGTCTGGTCTAGAAAAGTAATATGTCT 57.744 33.333 0.00 0.00 37.12 3.41
2431 7213 5.244785 TGTCTAGTCTTTATGCTACGTGG 57.755 43.478 0.00 0.00 0.00 4.94
2432 7214 4.703575 TGTCTAGTCTTTATGCTACGTGGT 59.296 41.667 0.00 0.00 0.00 4.16
2433 7215 5.882000 TGTCTAGTCTTTATGCTACGTGGTA 59.118 40.000 0.00 0.00 0.00 3.25
2434 7216 6.544931 TGTCTAGTCTTTATGCTACGTGGTAT 59.455 38.462 7.74 7.74 0.00 2.73
2435 7217 7.076983 GTCTAGTCTTTATGCTACGTGGTATC 58.923 42.308 5.64 0.00 0.00 2.24
2436 7218 6.996879 TCTAGTCTTTATGCTACGTGGTATCT 59.003 38.462 5.64 0.00 0.00 1.98
2437 7219 6.466885 AGTCTTTATGCTACGTGGTATCTT 57.533 37.500 5.64 0.00 0.00 2.40
2438 7220 6.875076 AGTCTTTATGCTACGTGGTATCTTT 58.125 36.000 5.64 0.00 0.00 2.52
2439 7221 7.328737 AGTCTTTATGCTACGTGGTATCTTTT 58.671 34.615 5.64 0.00 0.00 2.27
2440 7222 7.491696 AGTCTTTATGCTACGTGGTATCTTTTC 59.508 37.037 5.64 0.00 0.00 2.29
2441 7223 7.277098 GTCTTTATGCTACGTGGTATCTTTTCA 59.723 37.037 5.64 0.00 0.00 2.69
2442 7224 6.897259 TTATGCTACGTGGTATCTTTTCAC 57.103 37.500 5.64 0.00 0.00 3.18
2448 7230 4.245025 CGTGGTATCTTTTCACGTGATG 57.755 45.455 20.80 12.71 46.04 3.07
2449 7231 3.062099 CGTGGTATCTTTTCACGTGATGG 59.938 47.826 20.80 12.29 46.04 3.51
2450 7232 4.250464 GTGGTATCTTTTCACGTGATGGA 58.750 43.478 20.80 17.03 0.00 3.41
2451 7233 4.876107 GTGGTATCTTTTCACGTGATGGAT 59.124 41.667 20.80 21.92 0.00 3.41
2452 7234 4.875536 TGGTATCTTTTCACGTGATGGATG 59.124 41.667 20.80 10.67 0.00 3.51
2453 7235 4.876107 GGTATCTTTTCACGTGATGGATGT 59.124 41.667 20.80 7.05 0.00 3.06
2454 7236 5.006746 GGTATCTTTTCACGTGATGGATGTC 59.993 44.000 20.80 16.92 0.00 3.06
2455 7237 4.271696 TCTTTTCACGTGATGGATGTCT 57.728 40.909 20.80 0.00 0.00 3.41
2456 7238 3.996363 TCTTTTCACGTGATGGATGTCTG 59.004 43.478 20.80 2.98 0.00 3.51
2457 7239 3.401033 TTTCACGTGATGGATGTCTGT 57.599 42.857 20.80 0.00 0.00 3.41
2458 7240 4.529109 TTTCACGTGATGGATGTCTGTA 57.471 40.909 20.80 0.00 0.00 2.74
2459 7241 4.736126 TTCACGTGATGGATGTCTGTAT 57.264 40.909 20.80 0.00 0.00 2.29
2460 7242 4.045636 TCACGTGATGGATGTCTGTATG 57.954 45.455 15.76 0.00 0.00 2.39
2461 7243 3.447229 TCACGTGATGGATGTCTGTATGT 59.553 43.478 15.76 0.00 0.00 2.29
2462 7244 4.081697 TCACGTGATGGATGTCTGTATGTT 60.082 41.667 15.76 0.00 0.00 2.71
2463 7245 4.033243 CACGTGATGGATGTCTGTATGTTG 59.967 45.833 10.90 0.00 0.00 3.33
2464 7246 3.001634 CGTGATGGATGTCTGTATGTTGC 59.998 47.826 0.00 0.00 0.00 4.17
2465 7247 3.940852 GTGATGGATGTCTGTATGTTGCA 59.059 43.478 0.00 0.00 0.00 4.08
2466 7248 4.577693 GTGATGGATGTCTGTATGTTGCAT 59.422 41.667 0.00 0.00 0.00 3.96
2467 7249 5.066893 GTGATGGATGTCTGTATGTTGCATT 59.933 40.000 0.00 0.00 0.00 3.56
2468 7250 5.653330 TGATGGATGTCTGTATGTTGCATTT 59.347 36.000 0.00 0.00 0.00 2.32
2469 7251 5.565592 TGGATGTCTGTATGTTGCATTTC 57.434 39.130 0.00 0.00 0.00 2.17
2470 7252 5.255687 TGGATGTCTGTATGTTGCATTTCT 58.744 37.500 0.00 0.00 0.00 2.52
2471 7253 6.413892 TGGATGTCTGTATGTTGCATTTCTA 58.586 36.000 0.00 0.00 0.00 2.10
2472 7254 6.539826 TGGATGTCTGTATGTTGCATTTCTAG 59.460 38.462 0.00 0.00 0.00 2.43
2473 7255 6.540189 GGATGTCTGTATGTTGCATTTCTAGT 59.460 38.462 0.00 0.00 0.00 2.57
2474 7256 6.968131 TGTCTGTATGTTGCATTTCTAGTC 57.032 37.500 0.00 0.00 0.00 2.59
2475 7257 6.701340 TGTCTGTATGTTGCATTTCTAGTCT 58.299 36.000 0.00 0.00 0.00 3.24
2476 7258 6.813649 TGTCTGTATGTTGCATTTCTAGTCTC 59.186 38.462 0.00 0.00 0.00 3.36
2477 7259 7.038659 GTCTGTATGTTGCATTTCTAGTCTCT 58.961 38.462 0.00 0.00 0.00 3.10
2478 7260 8.191446 GTCTGTATGTTGCATTTCTAGTCTCTA 58.809 37.037 0.00 0.00 0.00 2.43
2479 7261 8.918116 TCTGTATGTTGCATTTCTAGTCTCTAT 58.082 33.333 0.00 0.00 0.00 1.98
2511 7293 6.663093 TGGTATCTTTTTATGTGTTGGATGCT 59.337 34.615 0.00 0.00 0.00 3.79
2513 7295 7.489113 GGTATCTTTTTATGTGTTGGATGCTTG 59.511 37.037 0.00 0.00 0.00 4.01
2515 7297 7.517614 TCTTTTTATGTGTTGGATGCTTGTA 57.482 32.000 0.00 0.00 0.00 2.41
2516 7298 8.121305 TCTTTTTATGTGTTGGATGCTTGTAT 57.879 30.769 0.00 0.00 0.00 2.29
2517 7299 9.237187 TCTTTTTATGTGTTGGATGCTTGTATA 57.763 29.630 0.00 0.00 0.00 1.47
2528 7310 5.817296 TGGATGCTTGTATATTCATATCCGC 59.183 40.000 12.14 0.00 36.50 5.54
2530 7312 5.420725 TGCTTGTATATTCATATCCGCCT 57.579 39.130 0.00 0.00 0.00 5.52
2601 7384 5.964958 AACCACATGTCGAAATTCAGATT 57.035 34.783 0.00 0.00 0.00 2.40
2637 7420 2.430921 CCTCGCGACGTGCTCTTT 60.431 61.111 3.71 0.00 43.27 2.52
2678 7461 5.014123 TGGGGATGTTTTGATGAACTAGTCT 59.986 40.000 0.00 0.00 0.00 3.24
2713 7497 9.177608 ACTAAACATCAATATGTGTGCAACTAT 57.822 29.630 0.00 0.00 45.79 2.12
2734 7521 1.301716 ATTGTCGCGCCAACTGAGT 60.302 52.632 4.03 0.00 0.00 3.41
2778 7568 5.121611 CCTGTCAACTAAACATCAATGCGTA 59.878 40.000 0.00 0.00 0.00 4.42
2909 7779 8.232913 TGAGCATATATGTGTGTAACTAGTCA 57.767 34.615 14.14 0.00 38.04 3.41
2938 7808 7.598118 CCAACTAAATATCAATGTGTGTGCAAA 59.402 33.333 0.00 0.00 0.00 3.68
2942 7812 9.838975 CTAAATATCAATGTGTGTGCAAACTAA 57.161 29.630 8.83 0.00 0.00 2.24
2946 7816 5.960113 TCAATGTGTGTGCAAACTAAACTT 58.040 33.333 8.83 0.00 0.00 2.66
2953 7898 5.043248 GTGTGCAAACTAAACTTCATTGCT 58.957 37.500 0.00 0.00 44.95 3.91
3046 7991 8.507249 AGACTAAATTACAAGTCAATTGAGCAC 58.493 33.333 8.80 0.00 43.74 4.40
3068 8013 3.819564 TGTGTGTGCAACTAGTCTTCT 57.180 42.857 0.00 0.00 38.04 2.85
3094 8125 5.735922 GCCAACTAAACATCAATGTGTGTGT 60.736 40.000 0.00 0.00 41.61 3.72
3132 8248 6.892658 ACAAGCCAACTAAACATCAATGTA 57.107 33.333 0.00 0.00 40.80 2.29
3151 8267 9.276590 TCAATGTATATGCAACTAATCTTCCTG 57.723 33.333 0.00 0.00 0.00 3.86
3152 8268 7.678947 ATGTATATGCAACTAATCTTCCTGC 57.321 36.000 0.00 0.00 0.00 4.85
3153 8269 5.997746 TGTATATGCAACTAATCTTCCTGCC 59.002 40.000 0.00 0.00 31.92 4.85
3154 8270 2.877097 TGCAACTAATCTTCCTGCCA 57.123 45.000 0.00 0.00 31.92 4.92
3155 8271 3.153369 TGCAACTAATCTTCCTGCCAA 57.847 42.857 0.00 0.00 31.92 4.52
3156 8272 2.819608 TGCAACTAATCTTCCTGCCAAC 59.180 45.455 0.00 0.00 31.92 3.77
3157 8273 3.084786 GCAACTAATCTTCCTGCCAACT 58.915 45.455 0.00 0.00 0.00 3.16
3158 8274 4.261801 GCAACTAATCTTCCTGCCAACTA 58.738 43.478 0.00 0.00 0.00 2.24
3159 8275 4.700213 GCAACTAATCTTCCTGCCAACTAA 59.300 41.667 0.00 0.00 0.00 2.24
3160 8276 5.183140 GCAACTAATCTTCCTGCCAACTAAA 59.817 40.000 0.00 0.00 0.00 1.85
3161 8277 6.612306 CAACTAATCTTCCTGCCAACTAAAC 58.388 40.000 0.00 0.00 0.00 2.01
3162 8278 5.876357 ACTAATCTTCCTGCCAACTAAACA 58.124 37.500 0.00 0.00 0.00 2.83
3163 8279 6.485171 ACTAATCTTCCTGCCAACTAAACAT 58.515 36.000 0.00 0.00 0.00 2.71
3164 8280 5.904362 AATCTTCCTGCCAACTAAACATC 57.096 39.130 0.00 0.00 0.00 3.06
3165 8281 4.365514 TCTTCCTGCCAACTAAACATCA 57.634 40.909 0.00 0.00 0.00 3.07
3166 8282 4.724399 TCTTCCTGCCAACTAAACATCAA 58.276 39.130 0.00 0.00 0.00 2.57
3167 8283 5.324409 TCTTCCTGCCAACTAAACATCAAT 58.676 37.500 0.00 0.00 0.00 2.57
3168 8284 6.480763 TCTTCCTGCCAACTAAACATCAATA 58.519 36.000 0.00 0.00 0.00 1.90
3169 8285 7.118723 TCTTCCTGCCAACTAAACATCAATAT 58.881 34.615 0.00 0.00 0.00 1.28
3170 8286 8.271458 TCTTCCTGCCAACTAAACATCAATATA 58.729 33.333 0.00 0.00 0.00 0.86
3171 8287 8.995027 TTCCTGCCAACTAAACATCAATATAT 57.005 30.769 0.00 0.00 0.00 0.86
3172 8288 8.394971 TCCTGCCAACTAAACATCAATATATG 57.605 34.615 0.00 0.00 0.00 1.78
3173 8289 7.998383 TCCTGCCAACTAAACATCAATATATGT 59.002 33.333 0.00 0.00 41.87 2.29
3174 8290 8.077991 CCTGCCAACTAAACATCAATATATGTG 58.922 37.037 0.00 0.00 39.98 3.21
3175 8291 7.424803 TGCCAACTAAACATCAATATATGTGC 58.575 34.615 0.00 0.00 39.98 4.57
3176 8292 7.067981 TGCCAACTAAACATCAATATATGTGCA 59.932 33.333 0.00 0.00 39.98 4.57
3177 8293 7.920151 GCCAACTAAACATCAATATATGTGCAA 59.080 33.333 0.00 0.00 39.98 4.08
3178 8294 9.236691 CCAACTAAACATCAATATATGTGCAAC 57.763 33.333 0.00 0.00 39.98 4.17
3184 8300 8.962884 AACATCAATATATGTGCAACTAGACA 57.037 30.769 0.00 0.00 39.98 3.41
3185 8301 8.962884 ACATCAATATATGTGCAACTAGACAA 57.037 30.769 0.00 0.00 38.65 3.18
3186 8302 8.830580 ACATCAATATATGTGCAACTAGACAAC 58.169 33.333 0.00 0.00 38.65 3.32
3187 8303 8.829612 CATCAATATATGTGCAACTAGACAACA 58.170 33.333 0.00 0.00 38.04 3.33
3188 8304 8.962884 TCAATATATGTGCAACTAGACAACAT 57.037 30.769 0.00 3.75 38.04 2.71
3189 8305 9.394767 TCAATATATGTGCAACTAGACAACATT 57.605 29.630 0.00 0.00 38.04 2.71
3192 8308 9.830975 ATATATGTGCAACTAGACAACATTACA 57.169 29.630 0.00 0.00 38.04 2.41
3193 8309 6.875948 ATGTGCAACTAGACAACATTACAA 57.124 33.333 0.00 0.00 38.04 2.41
3194 8310 6.299023 TGTGCAACTAGACAACATTACAAG 57.701 37.500 0.00 0.00 38.04 3.16
3195 8311 5.820423 TGTGCAACTAGACAACATTACAAGT 59.180 36.000 0.00 0.00 38.04 3.16
3196 8312 6.018262 TGTGCAACTAGACAACATTACAAGTC 60.018 38.462 0.00 0.00 38.04 3.01
3197 8313 6.018262 GTGCAACTAGACAACATTACAAGTCA 60.018 38.462 0.00 0.00 33.56 3.41
3198 8314 6.540551 TGCAACTAGACAACATTACAAGTCAA 59.459 34.615 0.00 0.00 33.56 3.18
3199 8315 6.851330 GCAACTAGACAACATTACAAGTCAAC 59.149 38.462 0.00 0.00 33.56 3.18
3200 8316 7.254795 GCAACTAGACAACATTACAAGTCAACT 60.255 37.037 0.00 0.00 33.56 3.16
3201 8317 9.256477 CAACTAGACAACATTACAAGTCAACTA 57.744 33.333 0.00 0.00 33.56 2.24
3202 8318 9.826574 AACTAGACAACATTACAAGTCAACTAA 57.173 29.630 0.00 0.00 33.56 2.24
3203 8319 9.826574 ACTAGACAACATTACAAGTCAACTAAA 57.173 29.630 0.00 0.00 33.56 1.85
3219 8335 9.394767 AGTCAACTAAATATCAATGTGTATGCA 57.605 29.630 0.00 0.00 0.00 3.96
3222 8338 8.946935 CAACTAAATATCAATGTGTATGCAACG 58.053 33.333 0.00 0.00 0.00 4.10
3223 8339 8.432110 ACTAAATATCAATGTGTATGCAACGA 57.568 30.769 0.00 0.00 0.00 3.85
3224 8340 8.335356 ACTAAATATCAATGTGTATGCAACGAC 58.665 33.333 0.00 0.00 0.00 4.34
3225 8341 3.656651 ATCAATGTGTATGCAACGACG 57.343 42.857 0.00 0.00 0.00 5.12
3226 8342 2.409012 TCAATGTGTATGCAACGACGT 58.591 42.857 0.00 0.00 0.00 4.34
3227 8343 3.576648 TCAATGTGTATGCAACGACGTA 58.423 40.909 0.00 0.00 0.00 3.57
3228 8344 3.365520 TCAATGTGTATGCAACGACGTAC 59.634 43.478 0.00 0.00 33.46 3.67
3229 8345 2.710220 TGTGTATGCAACGACGTACT 57.290 45.000 0.00 0.00 33.91 2.73
3230 8346 3.015934 TGTGTATGCAACGACGTACTT 57.984 42.857 0.00 0.00 33.91 2.24
3231 8347 2.981805 TGTGTATGCAACGACGTACTTC 59.018 45.455 0.00 0.00 33.91 3.01
3232 8348 3.240069 GTGTATGCAACGACGTACTTCT 58.760 45.455 0.00 0.00 33.91 2.85
3233 8349 3.300066 GTGTATGCAACGACGTACTTCTC 59.700 47.826 0.00 0.00 33.91 2.87
3234 8350 3.189910 TGTATGCAACGACGTACTTCTCT 59.810 43.478 0.00 0.00 33.91 3.10
3235 8351 2.787601 TGCAACGACGTACTTCTCTT 57.212 45.000 0.00 0.00 0.00 2.85
3236 8352 2.658285 TGCAACGACGTACTTCTCTTC 58.342 47.619 0.00 0.00 0.00 2.87
3237 8353 1.642843 GCAACGACGTACTTCTCTTCG 59.357 52.381 0.00 0.00 35.80 3.79
3238 8354 1.642843 CAACGACGTACTTCTCTTCGC 59.357 52.381 0.00 0.00 32.91 4.70
3239 8355 0.167689 ACGACGTACTTCTCTTCGCC 59.832 55.000 0.00 0.00 32.91 5.54
3240 8356 0.167470 CGACGTACTTCTCTTCGCCA 59.833 55.000 0.00 0.00 0.00 5.69
3241 8357 1.615502 GACGTACTTCTCTTCGCCAC 58.384 55.000 0.00 0.00 0.00 5.01
3242 8358 0.243095 ACGTACTTCTCTTCGCCACC 59.757 55.000 0.00 0.00 0.00 4.61
3243 8359 0.458025 CGTACTTCTCTTCGCCACCC 60.458 60.000 0.00 0.00 0.00 4.61
3244 8360 0.458025 GTACTTCTCTTCGCCACCCG 60.458 60.000 0.00 0.00 38.61 5.28
3245 8361 0.609957 TACTTCTCTTCGCCACCCGA 60.610 55.000 0.00 0.00 45.77 5.14
3256 8372 4.263572 CACCCGAACACCCTGCCA 62.264 66.667 0.00 0.00 0.00 4.92
3257 8373 3.953775 ACCCGAACACCCTGCCAG 61.954 66.667 0.00 0.00 0.00 4.85
3260 8376 4.641645 CGAACACCCTGCCAGCCA 62.642 66.667 0.00 0.00 0.00 4.75
3261 8377 2.036256 GAACACCCTGCCAGCCAT 59.964 61.111 0.00 0.00 0.00 4.40
3262 8378 2.036256 AACACCCTGCCAGCCATC 59.964 61.111 0.00 0.00 0.00 3.51
3263 8379 2.490270 GAACACCCTGCCAGCCATCT 62.490 60.000 0.00 0.00 0.00 2.90
3264 8380 2.124403 CACCCTGCCAGCCATCTC 60.124 66.667 0.00 0.00 0.00 2.75
3265 8381 3.415087 ACCCTGCCAGCCATCTCC 61.415 66.667 0.00 0.00 0.00 3.71
3266 8382 3.414193 CCCTGCCAGCCATCTCCA 61.414 66.667 0.00 0.00 0.00 3.86
3267 8383 2.192443 CCTGCCAGCCATCTCCAG 59.808 66.667 0.00 0.00 0.00 3.86
3268 8384 2.516460 CTGCCAGCCATCTCCAGC 60.516 66.667 0.00 0.00 0.00 4.85
3269 8385 4.119363 TGCCAGCCATCTCCAGCC 62.119 66.667 0.00 0.00 0.00 4.85
3270 8386 4.891037 GCCAGCCATCTCCAGCCC 62.891 72.222 0.00 0.00 0.00 5.19
3271 8387 4.559063 CCAGCCATCTCCAGCCCG 62.559 72.222 0.00 0.00 0.00 6.13
3272 8388 3.473647 CAGCCATCTCCAGCCCGA 61.474 66.667 0.00 0.00 0.00 5.14
3273 8389 3.160047 AGCCATCTCCAGCCCGAG 61.160 66.667 0.00 0.00 0.00 4.63
3274 8390 4.247380 GCCATCTCCAGCCCGAGG 62.247 72.222 0.00 0.00 0.00 4.63
3285 8401 4.849329 CCCGAGGCTACGCGACAC 62.849 72.222 15.93 0.00 42.82 3.67
3286 8402 4.849329 CCGAGGCTACGCGACACC 62.849 72.222 15.93 10.84 42.82 4.16
3287 8403 4.111016 CGAGGCTACGCGACACCA 62.111 66.667 15.93 0.00 42.82 4.17
3288 8404 2.260434 GAGGCTACGCGACACCAA 59.740 61.111 15.93 0.00 0.00 3.67
3289 8405 1.805945 GAGGCTACGCGACACCAAG 60.806 63.158 15.93 0.86 0.00 3.61
3290 8406 3.488090 GGCTACGCGACACCAAGC 61.488 66.667 15.93 11.17 0.00 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 0.545309 CTGGGAGGAGGAGTGGTTCA 60.545 60.000 0.00 0.00 0.00 3.18
84 85 0.815734 CGTACGGGATGAGTGGTTCT 59.184 55.000 7.57 0.00 0.00 3.01
135 136 2.481185 TGTGCTTATCCCGTCGTTTTTC 59.519 45.455 0.00 0.00 0.00 2.29
336 337 1.301954 GCCCGCCCTCCTTTTTCTA 59.698 57.895 0.00 0.00 0.00 2.10
370 373 1.171308 CTCACCGTTCTTCGTCCCTA 58.829 55.000 0.00 0.00 37.94 3.53
449 453 4.752879 CGCCGGGTTGTGGTCGAT 62.753 66.667 2.18 0.00 0.00 3.59
553 565 4.379082 GGTTTCGAATTTCGTGCCATAACT 60.379 41.667 17.61 0.00 41.35 2.24
556 568 2.094575 CGGTTTCGAATTTCGTGCCATA 59.905 45.455 17.61 0.00 41.35 2.74
588 600 2.602878 CAGTGTATTAGCCGTCGTGTT 58.397 47.619 0.00 0.00 0.00 3.32
589 601 1.135199 CCAGTGTATTAGCCGTCGTGT 60.135 52.381 0.00 0.00 0.00 4.49
732 745 1.052617 TCCAGGTGTTCATTGGTCGA 58.947 50.000 0.00 0.00 33.65 4.20
740 753 1.836391 CAGGGTGTCCAGGTGTTCA 59.164 57.895 0.00 0.00 34.83 3.18
757 770 2.513157 CGTTCCGATCGATTGCGCA 61.513 57.895 18.66 5.66 37.46 6.09
762 775 3.043586 CTCGATTTCGTTCCGATCGATT 58.956 45.455 18.66 0.00 43.10 3.34
763 776 2.651701 CTCGATTTCGTTCCGATCGAT 58.348 47.619 18.66 0.00 43.10 3.59
808 821 2.159327 ACCTAAAAAGTACACGCGCT 57.841 45.000 5.73 0.00 0.00 5.92
809 822 2.955607 AACCTAAAAAGTACACGCGC 57.044 45.000 5.73 0.00 0.00 6.86
810 823 5.376537 CCTAAAACCTAAAAAGTACACGCG 58.623 41.667 3.53 3.53 0.00 6.01
811 824 5.149273 GCCTAAAACCTAAAAAGTACACGC 58.851 41.667 0.00 0.00 0.00 5.34
812 825 6.303021 TGCCTAAAACCTAAAAAGTACACG 57.697 37.500 0.00 0.00 0.00 4.49
813 826 7.709947 ACTTGCCTAAAACCTAAAAAGTACAC 58.290 34.615 0.00 0.00 0.00 2.90
814 827 7.885009 ACTTGCCTAAAACCTAAAAAGTACA 57.115 32.000 0.00 0.00 0.00 2.90
815 828 8.192774 ACAACTTGCCTAAAACCTAAAAAGTAC 58.807 33.333 0.00 0.00 0.00 2.73
816 829 8.296211 ACAACTTGCCTAAAACCTAAAAAGTA 57.704 30.769 0.00 0.00 0.00 2.24
817 830 7.177832 ACAACTTGCCTAAAACCTAAAAAGT 57.822 32.000 0.00 0.00 0.00 2.66
818 831 8.487313 AAACAACTTGCCTAAAACCTAAAAAG 57.513 30.769 0.00 0.00 0.00 2.27
819 832 8.850007 AAAACAACTTGCCTAAAACCTAAAAA 57.150 26.923 0.00 0.00 0.00 1.94
820 833 7.549842 GGAAAACAACTTGCCTAAAACCTAAAA 59.450 33.333 0.00 0.00 0.00 1.52
821 834 7.042950 GGAAAACAACTTGCCTAAAACCTAAA 58.957 34.615 0.00 0.00 0.00 1.85
822 835 6.575267 GGAAAACAACTTGCCTAAAACCTAA 58.425 36.000 0.00 0.00 0.00 2.69
823 836 5.221087 CGGAAAACAACTTGCCTAAAACCTA 60.221 40.000 0.00 0.00 0.00 3.08
824 837 4.440940 CGGAAAACAACTTGCCTAAAACCT 60.441 41.667 0.00 0.00 0.00 3.50
825 838 3.799963 CGGAAAACAACTTGCCTAAAACC 59.200 43.478 0.00 0.00 0.00 3.27
826 839 3.799963 CCGGAAAACAACTTGCCTAAAAC 59.200 43.478 0.00 0.00 0.00 2.43
827 840 3.738590 GCCGGAAAACAACTTGCCTAAAA 60.739 43.478 5.05 0.00 0.00 1.52
828 841 2.223852 GCCGGAAAACAACTTGCCTAAA 60.224 45.455 5.05 0.00 0.00 1.85
829 842 1.338655 GCCGGAAAACAACTTGCCTAA 59.661 47.619 5.05 0.00 0.00 2.69
830 843 0.955905 GCCGGAAAACAACTTGCCTA 59.044 50.000 5.05 0.00 0.00 3.93
831 844 1.040339 TGCCGGAAAACAACTTGCCT 61.040 50.000 5.05 0.00 0.00 4.75
832 845 0.874175 GTGCCGGAAAACAACTTGCC 60.874 55.000 5.05 0.00 0.00 4.52
833 846 0.179124 TGTGCCGGAAAACAACTTGC 60.179 50.000 5.05 0.00 0.00 4.01
837 850 2.793278 AGAATGTGCCGGAAAACAAC 57.207 45.000 5.05 5.34 0.00 3.32
854 867 6.646653 CACAGTTACAGCTCACTCAATTAAGA 59.353 38.462 0.00 0.00 0.00 2.10
874 887 1.257750 TATGGACGAGGCTGCACAGT 61.258 55.000 0.50 0.00 0.00 3.55
913 926 5.051907 GGAGTATACGTGTAATCTTGTTGCG 60.052 44.000 17.32 0.00 0.00 4.85
960 976 0.811915 TCACCTCTTCTACGCTCAGC 59.188 55.000 0.00 0.00 0.00 4.26
962 978 1.819288 CCTTCACCTCTTCTACGCTCA 59.181 52.381 0.00 0.00 0.00 4.26
963 979 1.819903 ACCTTCACCTCTTCTACGCTC 59.180 52.381 0.00 0.00 0.00 5.03
964 980 1.546476 CACCTTCACCTCTTCTACGCT 59.454 52.381 0.00 0.00 0.00 5.07
991 1030 1.153208 CCTCCAGCATGCAGGAGTC 60.153 63.158 40.61 7.21 44.95 3.36
992 1031 1.614525 TCCTCCAGCATGCAGGAGT 60.615 57.895 40.61 13.83 44.95 3.85
1003 2475 0.838122 ACCACCTTCACCTCCTCCAG 60.838 60.000 0.00 0.00 0.00 3.86
1116 2588 2.485814 GTGGTAGAAGTAGACGTTCGGT 59.514 50.000 0.00 0.00 0.00 4.69
1121 2593 2.354259 CGGAGTGGTAGAAGTAGACGT 58.646 52.381 0.00 0.00 0.00 4.34
1369 2856 2.001361 ATGACGTCGTCGATGTCCCC 62.001 60.000 33.64 17.94 45.03 4.81
1486 2982 3.771160 GGCGGACCACGTCTGGAT 61.771 66.667 0.00 0.00 45.50 3.41
1609 3109 1.668101 GAGAGAGCGTCGGGGTTGAT 61.668 60.000 0.00 0.00 0.00 2.57
1666 3166 3.649277 CTCCAGACGGTTCCGGCAG 62.649 68.421 19.47 11.14 40.41 4.85
1683 4759 0.320771 AAATCTCGTTGACGGCAGCT 60.321 50.000 2.82 0.00 40.29 4.24
1684 4760 0.517316 AAAATCTCGTTGACGGCAGC 59.483 50.000 0.00 0.00 40.29 5.25
1937 6704 2.981560 GACGACGTCCCGCACCTTA 61.982 63.158 17.25 0.00 0.00 2.69
2049 6819 1.065636 TGTCTCCAGGTAGTCGATCGT 60.066 52.381 15.94 0.00 0.00 3.73
2118 6900 0.032813 ATGCCCAGCCAGCTGTTAAT 60.033 50.000 17.86 5.77 42.15 1.40
2120 6902 1.378911 CATGCCCAGCCAGCTGTTA 60.379 57.895 17.86 4.77 42.15 2.41
2204 6986 1.755008 GAGGTAGACGAGCCCTGCT 60.755 63.158 0.00 0.00 43.88 4.24
2264 7046 1.139947 GAGAACCGAGGAAGGCTCG 59.860 63.158 0.00 0.00 43.19 5.03
2265 7047 1.139947 CGAGAACCGAGGAAGGCTC 59.860 63.158 0.00 0.00 41.76 4.70
2266 7048 1.304217 TCGAGAACCGAGGAAGGCT 60.304 57.895 0.00 0.00 43.23 4.58
2267 7049 3.285371 TCGAGAACCGAGGAAGGC 58.715 61.111 0.00 0.00 43.23 4.35
2272 7054 5.526727 TCAGAATGCTTCGAGAACCGAGG 62.527 52.174 0.00 0.00 45.74 4.63
2273 7055 2.416027 TCAGAATGCTTCGAGAACCGAG 60.416 50.000 0.00 0.00 42.29 4.63
2274 7056 1.544246 TCAGAATGCTTCGAGAACCGA 59.456 47.619 0.00 0.00 40.44 4.69
2275 7057 1.996292 TCAGAATGCTTCGAGAACCG 58.004 50.000 0.00 0.00 36.08 4.44
2276 7058 6.422776 TTTATTCAGAATGCTTCGAGAACC 57.577 37.500 5.85 0.00 33.63 3.62
2277 7059 9.988350 TTATTTTATTCAGAATGCTTCGAGAAC 57.012 29.630 5.85 0.00 33.63 3.01
2279 7061 8.830580 CCTTATTTTATTCAGAATGCTTCGAGA 58.169 33.333 5.85 0.00 34.76 4.04
2280 7062 8.072567 CCCTTATTTTATTCAGAATGCTTCGAG 58.927 37.037 5.85 0.00 34.76 4.04
2281 7063 7.468631 GCCCTTATTTTATTCAGAATGCTTCGA 60.469 37.037 5.85 0.00 34.76 3.71
2282 7064 6.638468 GCCCTTATTTTATTCAGAATGCTTCG 59.362 38.462 5.85 0.00 34.76 3.79
2283 7065 6.638468 CGCCCTTATTTTATTCAGAATGCTTC 59.362 38.462 5.85 0.00 34.76 3.86
2284 7066 6.321181 TCGCCCTTATTTTATTCAGAATGCTT 59.679 34.615 5.85 0.00 34.76 3.91
2285 7067 5.827797 TCGCCCTTATTTTATTCAGAATGCT 59.172 36.000 5.85 0.00 34.76 3.79
2286 7068 6.072112 TCGCCCTTATTTTATTCAGAATGC 57.928 37.500 5.85 0.00 34.76 3.56
2297 7079 7.860872 CGCTCTTATTTTATTCGCCCTTATTTT 59.139 33.333 0.00 0.00 0.00 1.82
2298 7080 7.012989 ACGCTCTTATTTTATTCGCCCTTATTT 59.987 33.333 0.00 0.00 0.00 1.40
2299 7081 6.485648 ACGCTCTTATTTTATTCGCCCTTATT 59.514 34.615 0.00 0.00 0.00 1.40
2300 7082 5.995897 ACGCTCTTATTTTATTCGCCCTTAT 59.004 36.000 0.00 0.00 0.00 1.73
2301 7083 5.235616 CACGCTCTTATTTTATTCGCCCTTA 59.764 40.000 0.00 0.00 0.00 2.69
2302 7084 4.035208 CACGCTCTTATTTTATTCGCCCTT 59.965 41.667 0.00 0.00 0.00 3.95
2303 7085 3.560068 CACGCTCTTATTTTATTCGCCCT 59.440 43.478 0.00 0.00 0.00 5.19
2304 7086 3.311596 ACACGCTCTTATTTTATTCGCCC 59.688 43.478 0.00 0.00 0.00 6.13
2305 7087 4.270325 AGACACGCTCTTATTTTATTCGCC 59.730 41.667 0.00 0.00 0.00 5.54
2306 7088 5.391060 AGACACGCTCTTATTTTATTCGC 57.609 39.130 0.00 0.00 0.00 4.70
2307 7089 6.418226 AGCTAGACACGCTCTTATTTTATTCG 59.582 38.462 0.00 0.00 30.49 3.34
2308 7090 7.306866 CCAGCTAGACACGCTCTTATTTTATTC 60.307 40.741 0.00 0.00 35.07 1.75
2309 7091 6.480320 CCAGCTAGACACGCTCTTATTTTATT 59.520 38.462 0.00 0.00 35.07 1.40
2310 7092 5.986135 CCAGCTAGACACGCTCTTATTTTAT 59.014 40.000 0.00 0.00 35.07 1.40
2311 7093 5.348986 CCAGCTAGACACGCTCTTATTTTA 58.651 41.667 0.00 0.00 35.07 1.52
2312 7094 4.184629 CCAGCTAGACACGCTCTTATTTT 58.815 43.478 0.00 0.00 35.07 1.82
2313 7095 3.786635 CCAGCTAGACACGCTCTTATTT 58.213 45.455 0.00 0.00 35.07 1.40
2314 7096 2.482142 GCCAGCTAGACACGCTCTTATT 60.482 50.000 0.00 0.00 35.07 1.40
2315 7097 1.067821 GCCAGCTAGACACGCTCTTAT 59.932 52.381 0.00 0.00 35.07 1.73
2316 7098 0.456221 GCCAGCTAGACACGCTCTTA 59.544 55.000 0.00 0.00 35.07 2.10
2317 7099 1.216710 GCCAGCTAGACACGCTCTT 59.783 57.895 0.00 0.00 35.07 2.85
2318 7100 2.888863 GCCAGCTAGACACGCTCT 59.111 61.111 0.00 0.00 35.07 4.09
2319 7101 2.580867 CGCCAGCTAGACACGCTC 60.581 66.667 0.00 0.00 35.07 5.03
2320 7102 4.135153 CCGCCAGCTAGACACGCT 62.135 66.667 0.00 0.00 38.49 5.07
2323 7105 4.082523 TGGCCGCCAGCTAGACAC 62.083 66.667 8.43 0.00 43.05 3.67
2336 7118 2.502692 ACGTTAACGAGCCTCTGGCC 62.503 60.000 33.06 0.00 46.15 5.36
2337 7119 0.669625 AACGTTAACGAGCCTCTGGC 60.670 55.000 33.06 0.00 45.69 4.85
2338 7120 1.347320 GAACGTTAACGAGCCTCTGG 58.653 55.000 33.06 2.40 43.02 3.86
2339 7121 0.982673 CGAACGTTAACGAGCCTCTG 59.017 55.000 33.06 14.76 43.02 3.35
2340 7122 0.731855 GCGAACGTTAACGAGCCTCT 60.732 55.000 33.06 7.90 43.02 3.69
2341 7123 1.700595 GCGAACGTTAACGAGCCTC 59.299 57.895 33.06 20.26 43.02 4.70
2342 7124 2.084681 CGCGAACGTTAACGAGCCT 61.085 57.895 33.06 14.54 43.02 4.58
2343 7125 1.995253 CTCGCGAACGTTAACGAGCC 61.995 60.000 33.06 18.91 44.56 4.70
2344 7126 1.336164 CTCGCGAACGTTAACGAGC 59.664 57.895 33.06 28.48 44.56 5.03
2346 7128 2.419895 CGCTCGCGAACGTTAACGA 61.420 57.895 33.06 20.00 41.20 3.85
2347 7129 2.016423 CGCTCGCGAACGTTAACG 59.984 61.111 25.68 25.68 43.13 3.18
2348 7130 2.389143 CCGCTCGCGAACGTTAAC 59.611 61.111 27.66 0.00 42.83 2.01
2349 7131 3.472298 GCCGCTCGCGAACGTTAA 61.472 61.111 27.66 0.00 42.83 2.01
2358 7140 3.095032 TTTTTATCCGCCGCTCGC 58.905 55.556 0.00 0.00 36.73 5.03
2373 7155 1.880027 CCAGACAGGCGCTTACTTTTT 59.120 47.619 7.64 0.00 0.00 1.94
2374 7156 1.202770 ACCAGACAGGCGCTTACTTTT 60.203 47.619 7.64 0.00 43.14 2.27
2375 7157 0.396811 ACCAGACAGGCGCTTACTTT 59.603 50.000 7.64 0.00 43.14 2.66
2376 7158 0.037232 GACCAGACAGGCGCTTACTT 60.037 55.000 7.64 0.00 43.14 2.24
2377 7159 0.900647 AGACCAGACAGGCGCTTACT 60.901 55.000 7.64 0.00 43.14 2.24
2378 7160 0.815734 TAGACCAGACAGGCGCTTAC 59.184 55.000 7.64 0.00 43.14 2.34
2379 7161 1.103803 CTAGACCAGACAGGCGCTTA 58.896 55.000 7.64 0.00 43.14 3.09
2380 7162 0.612174 TCTAGACCAGACAGGCGCTT 60.612 55.000 7.64 0.00 43.14 4.68
2381 7163 0.612174 TTCTAGACCAGACAGGCGCT 60.612 55.000 7.64 0.00 43.14 5.92
2382 7164 0.246635 TTTCTAGACCAGACAGGCGC 59.753 55.000 0.00 0.00 43.14 6.53
2383 7165 2.028930 ACTTTTCTAGACCAGACAGGCG 60.029 50.000 0.00 0.00 43.14 5.52
2384 7166 3.686916 ACTTTTCTAGACCAGACAGGC 57.313 47.619 0.00 0.00 43.14 4.85
2385 7167 8.478877 ACATATTACTTTTCTAGACCAGACAGG 58.521 37.037 0.00 0.00 45.67 4.00
2386 7168 9.522804 GACATATTACTTTTCTAGACCAGACAG 57.477 37.037 0.00 0.00 31.12 3.51
2387 7169 9.256228 AGACATATTACTTTTCTAGACCAGACA 57.744 33.333 0.00 0.00 31.12 3.41
2405 7187 8.082852 CCACGTAGCATAAAGACTAGACATATT 58.917 37.037 0.00 0.00 0.00 1.28
2406 7188 7.230913 ACCACGTAGCATAAAGACTAGACATAT 59.769 37.037 0.00 0.00 0.00 1.78
2407 7189 6.544931 ACCACGTAGCATAAAGACTAGACATA 59.455 38.462 0.00 0.00 0.00 2.29
2408 7190 5.360144 ACCACGTAGCATAAAGACTAGACAT 59.640 40.000 0.00 0.00 0.00 3.06
2409 7191 4.703575 ACCACGTAGCATAAAGACTAGACA 59.296 41.667 0.00 0.00 0.00 3.41
2410 7192 5.246145 ACCACGTAGCATAAAGACTAGAC 57.754 43.478 0.00 0.00 0.00 2.59
2411 7193 6.996879 AGATACCACGTAGCATAAAGACTAGA 59.003 38.462 0.00 0.00 0.00 2.43
2412 7194 7.204496 AGATACCACGTAGCATAAAGACTAG 57.796 40.000 0.00 0.00 0.00 2.57
2413 7195 7.578310 AAGATACCACGTAGCATAAAGACTA 57.422 36.000 0.00 0.00 0.00 2.59
2414 7196 6.466885 AAGATACCACGTAGCATAAAGACT 57.533 37.500 0.00 0.00 0.00 3.24
2415 7197 7.277098 TGAAAAGATACCACGTAGCATAAAGAC 59.723 37.037 0.00 0.00 0.00 3.01
2416 7198 7.277098 GTGAAAAGATACCACGTAGCATAAAGA 59.723 37.037 0.00 0.00 0.00 2.52
2417 7199 7.399523 GTGAAAAGATACCACGTAGCATAAAG 58.600 38.462 0.00 0.00 0.00 1.85
2418 7200 6.035220 CGTGAAAAGATACCACGTAGCATAAA 59.965 38.462 0.00 0.00 45.79 1.40
2419 7201 5.517411 CGTGAAAAGATACCACGTAGCATAA 59.483 40.000 0.00 0.00 45.79 1.90
2420 7202 5.038683 CGTGAAAAGATACCACGTAGCATA 58.961 41.667 0.00 0.00 45.79 3.14
2421 7203 3.863424 CGTGAAAAGATACCACGTAGCAT 59.137 43.478 0.00 0.00 45.79 3.79
2422 7204 3.247442 CGTGAAAAGATACCACGTAGCA 58.753 45.455 0.00 0.00 45.79 3.49
2423 7205 3.901667 CGTGAAAAGATACCACGTAGC 57.098 47.619 0.00 0.00 45.79 3.58
2428 7210 4.250464 TCCATCACGTGAAAAGATACCAC 58.750 43.478 24.13 0.00 0.00 4.16
2429 7211 4.545208 TCCATCACGTGAAAAGATACCA 57.455 40.909 24.13 0.00 0.00 3.25
2430 7212 4.876107 ACATCCATCACGTGAAAAGATACC 59.124 41.667 24.13 0.00 0.00 2.73
2431 7213 5.812642 AGACATCCATCACGTGAAAAGATAC 59.187 40.000 24.13 18.39 0.00 2.24
2432 7214 5.812127 CAGACATCCATCACGTGAAAAGATA 59.188 40.000 24.13 5.63 0.00 1.98
2433 7215 4.633126 CAGACATCCATCACGTGAAAAGAT 59.367 41.667 24.13 20.16 0.00 2.40
2434 7216 3.996363 CAGACATCCATCACGTGAAAAGA 59.004 43.478 24.13 18.82 0.00 2.52
2435 7217 3.748048 ACAGACATCCATCACGTGAAAAG 59.252 43.478 24.13 15.00 0.00 2.27
2436 7218 3.738982 ACAGACATCCATCACGTGAAAA 58.261 40.909 24.13 11.26 0.00 2.29
2437 7219 3.401033 ACAGACATCCATCACGTGAAA 57.599 42.857 24.13 11.64 0.00 2.69
2438 7220 4.081697 ACATACAGACATCCATCACGTGAA 60.082 41.667 24.13 6.61 0.00 3.18
2439 7221 3.447229 ACATACAGACATCCATCACGTGA 59.553 43.478 22.48 22.48 0.00 4.35
2440 7222 3.785486 ACATACAGACATCCATCACGTG 58.215 45.455 9.94 9.94 0.00 4.49
2441 7223 4.183865 CAACATACAGACATCCATCACGT 58.816 43.478 0.00 0.00 0.00 4.49
2442 7224 3.001634 GCAACATACAGACATCCATCACG 59.998 47.826 0.00 0.00 0.00 4.35
2443 7225 3.940852 TGCAACATACAGACATCCATCAC 59.059 43.478 0.00 0.00 0.00 3.06
2444 7226 4.219264 TGCAACATACAGACATCCATCA 57.781 40.909 0.00 0.00 0.00 3.07
2445 7227 5.762825 AATGCAACATACAGACATCCATC 57.237 39.130 0.00 0.00 0.00 3.51
2446 7228 5.889853 AGAAATGCAACATACAGACATCCAT 59.110 36.000 0.00 0.00 0.00 3.41
2447 7229 5.255687 AGAAATGCAACATACAGACATCCA 58.744 37.500 0.00 0.00 0.00 3.41
2448 7230 5.824904 AGAAATGCAACATACAGACATCC 57.175 39.130 0.00 0.00 0.00 3.51
2449 7231 7.493971 AGACTAGAAATGCAACATACAGACATC 59.506 37.037 0.00 0.00 0.00 3.06
2450 7232 7.334090 AGACTAGAAATGCAACATACAGACAT 58.666 34.615 0.00 0.00 0.00 3.06
2451 7233 6.701340 AGACTAGAAATGCAACATACAGACA 58.299 36.000 0.00 0.00 0.00 3.41
2452 7234 7.038659 AGAGACTAGAAATGCAACATACAGAC 58.961 38.462 0.00 0.00 0.00 3.51
2453 7235 7.175347 AGAGACTAGAAATGCAACATACAGA 57.825 36.000 0.00 0.00 0.00 3.41
2454 7236 9.190858 GATAGAGACTAGAAATGCAACATACAG 57.809 37.037 0.00 0.00 0.00 2.74
2455 7237 8.918116 AGATAGAGACTAGAAATGCAACATACA 58.082 33.333 0.00 0.00 0.00 2.29
2456 7238 9.757227 AAGATAGAGACTAGAAATGCAACATAC 57.243 33.333 0.00 0.00 0.00 2.39
2459 7241 9.755804 CATAAGATAGAGACTAGAAATGCAACA 57.244 33.333 0.00 0.00 0.00 3.33
2460 7242 9.757227 ACATAAGATAGAGACTAGAAATGCAAC 57.243 33.333 0.00 0.00 0.00 4.17
2461 7243 9.755804 CACATAAGATAGAGACTAGAAATGCAA 57.244 33.333 0.00 0.00 0.00 4.08
2462 7244 8.363390 CCACATAAGATAGAGACTAGAAATGCA 58.637 37.037 0.00 0.00 0.00 3.96
2463 7245 8.364142 ACCACATAAGATAGAGACTAGAAATGC 58.636 37.037 0.00 0.00 0.00 3.56
2490 7272 6.996509 ACAAGCATCCAACACATAAAAAGAT 58.003 32.000 0.00 0.00 0.00 2.40
2495 7277 9.183368 TGAATATACAAGCATCCAACACATAAA 57.817 29.630 0.00 0.00 0.00 1.40
2497 7279 8.922931 ATGAATATACAAGCATCCAACACATA 57.077 30.769 0.00 0.00 0.00 2.29
2500 7282 8.454106 GGATATGAATATACAAGCATCCAACAC 58.546 37.037 0.00 0.00 32.24 3.32
2503 7285 6.316140 GCGGATATGAATATACAAGCATCCAA 59.684 38.462 0.00 0.00 31.84 3.53
2511 7293 5.874810 GCAAGAGGCGGATATGAATATACAA 59.125 40.000 0.00 0.00 0.00 2.41
2513 7295 5.975410 GCAAGAGGCGGATATGAATATAC 57.025 43.478 0.00 0.00 0.00 1.47
2585 7368 6.898041 TGAAAACGAATCTGAATTTCGACAT 58.102 32.000 17.41 5.31 46.73 3.06
2668 7451 4.689612 AGTTGGCAGAAAGACTAGTTCA 57.310 40.909 0.00 0.00 0.00 3.18
2678 7461 8.028354 CACATATTGATGTTTAGTTGGCAGAAA 58.972 33.333 0.00 0.00 44.18 2.52
2713 7497 0.319986 TCAGTTGGCGCGACAATGTA 60.320 50.000 32.77 16.10 32.24 2.29
2734 7521 7.123547 TGACAGGACTATTGACACACACATATA 59.876 37.037 0.00 0.00 0.00 0.86
2778 7568 4.083324 CGTGACAATTTGGTCTAGTTGCAT 60.083 41.667 0.78 0.00 38.61 3.96
2790 7580 2.653890 CTCAGTTGGCGTGACAATTTG 58.346 47.619 0.00 0.00 32.24 2.32
2792 7582 0.593128 GCTCAGTTGGCGTGACAATT 59.407 50.000 0.00 0.00 32.24 2.32
2909 7779 7.259882 CACACACATTGATATTTAGTTGGCAT 58.740 34.615 0.00 0.00 0.00 4.40
2938 7808 3.138304 TGACGCAGCAATGAAGTTTAGT 58.862 40.909 0.00 0.00 0.00 2.24
2942 7812 3.243501 ACAATTGACGCAGCAATGAAGTT 60.244 39.130 13.59 0.00 38.42 2.66
2946 7816 1.666599 GCACAATTGACGCAGCAATGA 60.667 47.619 13.59 0.00 38.42 2.57
2953 7898 1.069091 CACATCTGCACAATTGACGCA 60.069 47.619 20.64 20.64 0.00 5.24
2968 7913 2.480419 GGACACTAGTTGCACACACATC 59.520 50.000 0.00 0.00 0.00 3.06
3046 7991 4.060900 AGAAGACTAGTTGCACACACATG 58.939 43.478 0.00 0.00 0.00 3.21
3068 8013 5.163468 ACACACATTGATGTTTAGTTGGCAA 60.163 36.000 0.00 0.00 39.39 4.52
3094 8125 8.130671 AGTTGGCTTGTAATGTAGTCTAGTTA 57.869 34.615 0.00 0.00 0.00 2.24
3132 8248 5.052693 TGGCAGGAAGATTAGTTGCATAT 57.947 39.130 0.00 0.00 36.53 1.78
3143 8259 4.922206 TGATGTTTAGTTGGCAGGAAGAT 58.078 39.130 0.00 0.00 0.00 2.40
3144 8260 4.365514 TGATGTTTAGTTGGCAGGAAGA 57.634 40.909 0.00 0.00 0.00 2.87
3145 8261 5.649782 ATTGATGTTTAGTTGGCAGGAAG 57.350 39.130 0.00 0.00 0.00 3.46
3146 8262 8.849168 CATATATTGATGTTTAGTTGGCAGGAA 58.151 33.333 0.00 0.00 0.00 3.36
3147 8263 7.998383 ACATATATTGATGTTTAGTTGGCAGGA 59.002 33.333 0.00 0.00 36.64 3.86
3148 8264 8.077991 CACATATATTGATGTTTAGTTGGCAGG 58.922 37.037 0.00 0.00 37.99 4.85
3149 8265 7.592533 GCACATATATTGATGTTTAGTTGGCAG 59.407 37.037 0.00 0.00 37.99 4.85
3150 8266 7.067981 TGCACATATATTGATGTTTAGTTGGCA 59.932 33.333 0.00 0.00 37.99 4.92
3151 8267 7.424803 TGCACATATATTGATGTTTAGTTGGC 58.575 34.615 0.00 0.00 37.99 4.52
3152 8268 9.236691 GTTGCACATATATTGATGTTTAGTTGG 57.763 33.333 0.00 0.00 37.99 3.77
3158 8274 9.394767 TGTCTAGTTGCACATATATTGATGTTT 57.605 29.630 0.00 0.00 37.99 2.83
3159 8275 8.962884 TGTCTAGTTGCACATATATTGATGTT 57.037 30.769 0.00 0.00 37.99 2.71
3160 8276 8.830580 GTTGTCTAGTTGCACATATATTGATGT 58.169 33.333 0.00 0.00 40.78 3.06
3161 8277 8.829612 TGTTGTCTAGTTGCACATATATTGATG 58.170 33.333 0.00 0.00 0.00 3.07
3162 8278 8.962884 TGTTGTCTAGTTGCACATATATTGAT 57.037 30.769 0.00 0.00 0.00 2.57
3163 8279 8.962884 ATGTTGTCTAGTTGCACATATATTGA 57.037 30.769 0.00 0.00 0.00 2.57
3166 8282 9.830975 TGTAATGTTGTCTAGTTGCACATATAT 57.169 29.630 0.00 0.00 0.00 0.86
3167 8283 9.660180 TTGTAATGTTGTCTAGTTGCACATATA 57.340 29.630 0.00 0.00 0.00 0.86
3168 8284 8.560355 TTGTAATGTTGTCTAGTTGCACATAT 57.440 30.769 0.00 0.00 0.00 1.78
3169 8285 7.659799 ACTTGTAATGTTGTCTAGTTGCACATA 59.340 33.333 0.00 0.00 0.00 2.29
3170 8286 6.486657 ACTTGTAATGTTGTCTAGTTGCACAT 59.513 34.615 0.00 0.00 0.00 3.21
3171 8287 5.820423 ACTTGTAATGTTGTCTAGTTGCACA 59.180 36.000 0.00 0.00 0.00 4.57
3172 8288 6.018262 TGACTTGTAATGTTGTCTAGTTGCAC 60.018 38.462 0.00 0.00 0.00 4.57
3173 8289 6.052360 TGACTTGTAATGTTGTCTAGTTGCA 58.948 36.000 0.00 0.00 0.00 4.08
3174 8290 6.539649 TGACTTGTAATGTTGTCTAGTTGC 57.460 37.500 0.00 0.00 0.00 4.17
3175 8291 8.142994 AGTTGACTTGTAATGTTGTCTAGTTG 57.857 34.615 0.00 0.00 0.00 3.16
3176 8292 9.826574 TTAGTTGACTTGTAATGTTGTCTAGTT 57.173 29.630 0.00 0.00 0.00 2.24
3177 8293 9.826574 TTTAGTTGACTTGTAATGTTGTCTAGT 57.173 29.630 0.00 0.00 0.00 2.57
3193 8309 9.394767 TGCATACACATTGATATTTAGTTGACT 57.605 29.630 0.00 0.00 0.00 3.41
3196 8312 8.946935 CGTTGCATACACATTGATATTTAGTTG 58.053 33.333 0.00 0.00 0.00 3.16
3197 8313 8.888716 TCGTTGCATACACATTGATATTTAGTT 58.111 29.630 0.00 0.00 0.00 2.24
3198 8314 8.335356 GTCGTTGCATACACATTGATATTTAGT 58.665 33.333 0.00 0.00 0.00 2.24
3199 8315 7.527183 CGTCGTTGCATACACATTGATATTTAG 59.473 37.037 0.00 0.00 0.00 1.85
3200 8316 7.010645 ACGTCGTTGCATACACATTGATATTTA 59.989 33.333 0.00 0.00 0.00 1.40
3201 8317 6.183360 ACGTCGTTGCATACACATTGATATTT 60.183 34.615 0.00 0.00 0.00 1.40
3202 8318 5.293324 ACGTCGTTGCATACACATTGATATT 59.707 36.000 0.00 0.00 0.00 1.28
3203 8319 4.808895 ACGTCGTTGCATACACATTGATAT 59.191 37.500 0.00 0.00 0.00 1.63
3204 8320 4.177783 ACGTCGTTGCATACACATTGATA 58.822 39.130 0.00 0.00 0.00 2.15
3205 8321 3.000041 ACGTCGTTGCATACACATTGAT 59.000 40.909 0.00 0.00 0.00 2.57
3206 8322 2.409012 ACGTCGTTGCATACACATTGA 58.591 42.857 0.00 0.00 0.00 2.57
3207 8323 2.873170 ACGTCGTTGCATACACATTG 57.127 45.000 0.00 0.00 0.00 2.82
3208 8324 3.581755 AGTACGTCGTTGCATACACATT 58.418 40.909 1.78 0.00 0.00 2.71
3209 8325 3.226346 AGTACGTCGTTGCATACACAT 57.774 42.857 1.78 0.00 0.00 3.21
3210 8326 2.710220 AGTACGTCGTTGCATACACA 57.290 45.000 1.78 0.00 0.00 3.72
3211 8327 3.240069 AGAAGTACGTCGTTGCATACAC 58.760 45.455 1.78 0.00 0.00 2.90
3212 8328 3.189910 AGAGAAGTACGTCGTTGCATACA 59.810 43.478 1.78 0.00 0.00 2.29
3213 8329 3.756069 AGAGAAGTACGTCGTTGCATAC 58.244 45.455 1.78 0.00 0.00 2.39
3214 8330 4.409570 GAAGAGAAGTACGTCGTTGCATA 58.590 43.478 1.78 0.00 0.00 3.14
3215 8331 3.243336 GAAGAGAAGTACGTCGTTGCAT 58.757 45.455 1.78 0.00 0.00 3.96
3216 8332 2.658285 GAAGAGAAGTACGTCGTTGCA 58.342 47.619 1.78 0.00 0.00 4.08
3217 8333 1.642843 CGAAGAGAAGTACGTCGTTGC 59.357 52.381 1.78 0.00 35.37 4.17
3218 8334 1.642843 GCGAAGAGAAGTACGTCGTTG 59.357 52.381 1.78 0.00 40.20 4.10
3219 8335 1.400759 GGCGAAGAGAAGTACGTCGTT 60.401 52.381 1.78 1.57 40.20 3.85
3220 8336 0.167689 GGCGAAGAGAAGTACGTCGT 59.832 55.000 2.21 2.21 40.20 4.34
3221 8337 0.167470 TGGCGAAGAGAAGTACGTCG 59.833 55.000 3.05 0.00 40.77 5.12
3222 8338 1.615502 GTGGCGAAGAGAAGTACGTC 58.384 55.000 0.00 0.00 0.00 4.34
3223 8339 0.243095 GGTGGCGAAGAGAAGTACGT 59.757 55.000 0.00 0.00 0.00 3.57
3224 8340 0.458025 GGGTGGCGAAGAGAAGTACG 60.458 60.000 0.00 0.00 0.00 3.67
3225 8341 0.458025 CGGGTGGCGAAGAGAAGTAC 60.458 60.000 0.00 0.00 0.00 2.73
3226 8342 0.609957 TCGGGTGGCGAAGAGAAGTA 60.610 55.000 0.00 0.00 0.00 2.24
3227 8343 1.469335 TTCGGGTGGCGAAGAGAAGT 61.469 55.000 0.00 0.00 0.00 3.01
3228 8344 1.014564 GTTCGGGTGGCGAAGAGAAG 61.015 60.000 0.00 0.00 0.00 2.85
3229 8345 1.005394 GTTCGGGTGGCGAAGAGAA 60.005 57.895 0.00 0.00 0.00 2.87
3230 8346 2.204461 TGTTCGGGTGGCGAAGAGA 61.204 57.895 0.00 0.00 0.00 3.10
3231 8347 2.027625 GTGTTCGGGTGGCGAAGAG 61.028 63.158 0.00 0.00 0.00 2.85
3232 8348 2.029964 GTGTTCGGGTGGCGAAGA 59.970 61.111 0.00 0.00 0.00 2.87
3233 8349 3.047877 GGTGTTCGGGTGGCGAAG 61.048 66.667 0.00 0.00 0.00 3.79
3234 8350 4.629523 GGGTGTTCGGGTGGCGAA 62.630 66.667 0.00 0.00 0.00 4.70
3239 8355 4.263572 TGGCAGGGTGTTCGGGTG 62.264 66.667 0.00 0.00 0.00 4.61
3240 8356 3.953775 CTGGCAGGGTGTTCGGGT 61.954 66.667 6.61 0.00 0.00 5.28
3243 8359 3.925630 ATGGCTGGCAGGGTGTTCG 62.926 63.158 17.64 0.00 0.00 3.95
3244 8360 2.036256 ATGGCTGGCAGGGTGTTC 59.964 61.111 17.64 0.00 0.00 3.18
3245 8361 2.036256 GATGGCTGGCAGGGTGTT 59.964 61.111 17.64 0.00 0.00 3.32
3246 8362 2.937689 AGATGGCTGGCAGGGTGT 60.938 61.111 17.64 0.00 0.00 4.16
3247 8363 2.124403 GAGATGGCTGGCAGGGTG 60.124 66.667 17.64 0.00 0.00 4.61
3248 8364 3.415087 GGAGATGGCTGGCAGGGT 61.415 66.667 17.64 0.00 0.00 4.34
3249 8365 3.414193 TGGAGATGGCTGGCAGGG 61.414 66.667 17.64 0.00 0.00 4.45
3250 8366 2.192443 CTGGAGATGGCTGGCAGG 59.808 66.667 17.64 0.00 0.00 4.85
3251 8367 2.516460 GCTGGAGATGGCTGGCAG 60.516 66.667 10.94 10.94 0.00 4.85
3252 8368 4.119363 GGCTGGAGATGGCTGGCA 62.119 66.667 6.31 6.31 0.00 4.92
3253 8369 4.891037 GGGCTGGAGATGGCTGGC 62.891 72.222 0.00 0.00 0.00 4.85
3254 8370 4.559063 CGGGCTGGAGATGGCTGG 62.559 72.222 0.00 0.00 33.41 4.85
3255 8371 3.457625 CTCGGGCTGGAGATGGCTG 62.458 68.421 0.00 0.00 36.08 4.85
3256 8372 3.160047 CTCGGGCTGGAGATGGCT 61.160 66.667 0.00 0.00 36.08 4.75
3257 8373 4.247380 CCTCGGGCTGGAGATGGC 62.247 72.222 7.53 0.00 36.08 4.40
3258 8374 4.247380 GCCTCGGGCTGGAGATGG 62.247 72.222 7.58 0.00 46.69 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.