Multiple sequence alignment - TraesCS6A01G335500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G335500 chr6A 100.000 3527 0 0 1 3527 568017076 568013550 0.000000e+00 6514.0
1 TraesCS6A01G335500 chr6A 95.122 41 2 0 490 530 150922381 150922341 8.170000e-07 65.8
2 TraesCS6A01G335500 chr6D 90.414 2441 109 51 562 2940 423674735 423677112 0.000000e+00 3096.0
3 TraesCS6A01G335500 chr6D 92.147 191 12 3 2 191 423674275 423674463 2.090000e-67 267.0
4 TraesCS6A01G335500 chr6D 92.308 156 6 3 3374 3527 423677405 423677556 2.130000e-52 217.0
5 TraesCS6A01G335500 chr6B 86.802 1432 65 46 1569 2943 638935287 638933923 0.000000e+00 1483.0
6 TraesCS6A01G335500 chr6B 88.036 886 41 24 623 1477 638936221 638935370 0.000000e+00 989.0
7 TraesCS6A01G335500 chr6B 88.125 160 11 5 3374 3527 638933639 638933482 2.160000e-42 183.0
8 TraesCS6A01G335500 chr6B 93.814 97 4 1 3128 3224 638933724 638933630 1.020000e-30 145.0
9 TraesCS6A01G335500 chr4D 94.631 149 8 0 3227 3375 503795014 503794866 7.610000e-57 231.0
10 TraesCS6A01G335500 chr4D 93.289 149 10 0 3227 3375 441106963 441106815 1.650000e-53 220.0
11 TraesCS6A01G335500 chr2D 93.548 155 9 1 3221 3374 247094252 247094098 2.740000e-56 230.0
12 TraesCS6A01G335500 chr3A 92.000 150 12 0 3227 3376 117808209 117808060 9.920000e-51 211.0
13 TraesCS6A01G335500 chr3A 92.000 150 12 0 3227 3376 117837109 117836960 9.920000e-51 211.0
14 TraesCS6A01G335500 chr5A 84.211 171 27 0 1301 1471 462145405 462145575 2.180000e-37 167.0
15 TraesCS6A01G335500 chr5D 83.929 168 27 0 1301 1468 361606665 361606832 1.010000e-35 161.0
16 TraesCS6A01G335500 chr5B 83.929 168 27 0 1301 1468 427239008 427239175 1.010000e-35 161.0
17 TraesCS6A01G335500 chr3D 81.250 96 12 5 191 283 267248713 267248621 4.880000e-09 73.1
18 TraesCS6A01G335500 chr7D 91.111 45 3 1 3061 3104 33478393 33478437 3.800000e-05 60.2
19 TraesCS6A01G335500 chr1A 92.857 42 2 1 190 231 374679471 374679511 3.800000e-05 60.2
20 TraesCS6A01G335500 chr2B 86.275 51 6 1 2469 2518 463282123 463282173 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G335500 chr6A 568013550 568017076 3526 True 6514.000000 6514 100.00000 1 3527 1 chr6A.!!$R2 3526
1 TraesCS6A01G335500 chr6D 423674275 423677556 3281 False 1193.333333 3096 91.62300 2 3527 3 chr6D.!!$F1 3525
2 TraesCS6A01G335500 chr6B 638933482 638936221 2739 True 700.000000 1483 89.19425 623 3527 4 chr6B.!!$R1 2904

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
87 88 0.028902 GGACGATTTGGTAATGCGCC 59.971 55.0 4.18 0.0 0.00 6.53 F
393 420 0.111045 TGTGTGCACGCGTTTATTCG 60.111 50.0 24.30 0.0 0.00 3.34 F
1220 1282 0.037447 GAAGGCAGTTCCTCCTTGCT 59.963 55.0 0.00 0.0 46.94 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1120 1182 0.534203 TTGCTTCCGTCCAACTCCAC 60.534 55.0 0.0 0.0 0.0 4.02 R
2285 2439 0.179111 GGACGTTCGATGATCCTGCA 60.179 55.0 0.0 0.0 0.0 4.41 R
2790 2957 0.732571 CCGTACAACATGATGCCCAC 59.267 55.0 0.0 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 4.900635 AAGCATACGAACCATTCAATCC 57.099 40.909 0.00 0.00 0.00 3.01
60 61 4.704540 AGCATACGAACCATTCAATCCAAA 59.295 37.500 0.00 0.00 0.00 3.28
61 62 5.036737 GCATACGAACCATTCAATCCAAAG 58.963 41.667 0.00 0.00 0.00 2.77
63 64 6.624861 GCATACGAACCATTCAATCCAAAGAA 60.625 38.462 0.00 0.00 0.00 2.52
82 83 6.911250 AAGAAAAAGGGACGATTTGGTAAT 57.089 33.333 0.00 0.00 0.00 1.89
87 88 0.028902 GGACGATTTGGTAATGCGCC 59.971 55.000 4.18 0.00 0.00 6.53
106 107 3.211045 GCCTTAACCATGCGGATTCTTA 58.789 45.455 0.00 0.00 35.59 2.10
108 109 4.083271 GCCTTAACCATGCGGATTCTTATC 60.083 45.833 0.00 0.00 35.59 1.75
114 115 3.185188 CCATGCGGATTCTTATCGTTGAG 59.815 47.826 0.00 0.00 0.00 3.02
133 134 4.398319 TGAGGTCCAAAATTCAAGTCTCC 58.602 43.478 0.00 0.00 0.00 3.71
172 174 8.850452 GCTTTCTCACAAACGGATTAAAAATAG 58.150 33.333 0.00 0.00 0.00 1.73
209 236 2.158534 AGTTAGGTTGCATGTGGTGGAA 60.159 45.455 0.00 0.00 35.63 3.53
235 262 3.492102 CCATCGGGGTTCAAGTCATAT 57.508 47.619 0.00 0.00 0.00 1.78
252 279 4.743644 GTCATATACTTAGCGTTGGTGGTC 59.256 45.833 0.00 0.00 0.00 4.02
253 280 4.403113 TCATATACTTAGCGTTGGTGGTCA 59.597 41.667 0.00 0.00 0.00 4.02
260 287 1.754226 AGCGTTGGTGGTCACATTTTT 59.246 42.857 3.40 0.00 0.00 1.94
282 309 8.541133 TTTTTAAATTTATTTCAGGCCTTCCG 57.459 30.769 0.00 0.00 37.47 4.30
283 310 4.736126 AAATTTATTTCAGGCCTTCCGG 57.264 40.909 0.00 0.00 37.47 5.14
302 329 2.017049 GGCGTTGTTGAAGGCATCTAT 58.983 47.619 0.00 0.00 43.42 1.98
307 334 3.885724 TGTTGAAGGCATCTATGACGA 57.114 42.857 0.00 0.00 41.91 4.20
312 339 3.447229 TGAAGGCATCTATGACGACTTCA 59.553 43.478 7.69 7.69 41.91 3.02
324 351 5.077134 TGACGACTTCATCAATCTCATGT 57.923 39.130 0.00 0.00 0.00 3.21
325 352 5.482006 TGACGACTTCATCAATCTCATGTT 58.518 37.500 0.00 0.00 0.00 2.71
327 354 5.482006 ACGACTTCATCAATCTCATGTTGA 58.518 37.500 0.25 0.25 39.65 3.18
335 362 4.819769 TCAATCTCATGTTGATGTGTCGA 58.180 39.130 0.00 0.00 31.07 4.20
342 369 3.013276 TGTTGATGTGTCGACTCAGTC 57.987 47.619 23.01 19.13 39.17 3.51
343 370 2.623416 TGTTGATGTGTCGACTCAGTCT 59.377 45.455 23.01 8.92 39.17 3.24
344 371 3.238441 GTTGATGTGTCGACTCAGTCTC 58.762 50.000 23.01 16.66 36.09 3.36
347 374 2.552599 TGTGTCGACTCAGTCTCTCT 57.447 50.000 17.92 0.00 0.00 3.10
359 386 1.029408 GTCTCTCTCTGAGGCGCTCA 61.029 60.000 7.64 8.39 42.86 4.26
364 391 1.680735 CTCTCTGAGGCGCTCATAAGT 59.319 52.381 7.64 0.00 39.92 2.24
373 400 2.464865 GCGCTCATAAGTGGTAGAGTG 58.535 52.381 0.00 0.00 40.56 3.51
378 405 4.322049 GCTCATAAGTGGTAGAGTGTGTGT 60.322 45.833 0.00 0.00 0.00 3.72
379 406 5.134202 TCATAAGTGGTAGAGTGTGTGTG 57.866 43.478 0.00 0.00 0.00 3.82
380 407 2.240493 AAGTGGTAGAGTGTGTGTGC 57.760 50.000 0.00 0.00 0.00 4.57
381 408 1.119684 AGTGGTAGAGTGTGTGTGCA 58.880 50.000 0.00 0.00 0.00 4.57
393 420 0.111045 TGTGTGCACGCGTTTATTCG 60.111 50.000 24.30 0.00 0.00 3.34
395 422 1.124658 GTGTGCACGCGTTTATTCGTA 59.875 47.619 15.68 0.00 37.14 3.43
402 429 2.861935 ACGCGTTTATTCGTAGGAATGG 59.138 45.455 18.59 7.98 42.72 3.16
403 430 3.117794 CGCGTTTATTCGTAGGAATGGA 58.882 45.455 18.59 6.47 42.72 3.41
418 445 2.259266 ATGGATGCATGTGCGTATGA 57.741 45.000 2.46 0.00 45.83 2.15
419 446 1.585297 TGGATGCATGTGCGTATGAG 58.415 50.000 2.46 0.00 45.83 2.90
421 448 2.102252 TGGATGCATGTGCGTATGAGTA 59.898 45.455 2.46 0.00 45.83 2.59
422 449 3.244181 TGGATGCATGTGCGTATGAGTAT 60.244 43.478 2.46 0.00 45.83 2.12
423 450 3.748048 GGATGCATGTGCGTATGAGTATT 59.252 43.478 2.46 0.00 45.83 1.89
435 462 5.271625 CGTATGAGTATTTGCGTCTGTACT 58.728 41.667 0.00 0.00 0.00 2.73
441 468 6.530181 TGAGTATTTGCGTCTGTACTATGTTG 59.470 38.462 0.00 0.00 0.00 3.33
467 494 7.576861 AAAAATTACTCCCTCTGTTCGAAAA 57.423 32.000 0.00 0.00 0.00 2.29
468 495 7.761038 AAAATTACTCCCTCTGTTCGAAAAT 57.239 32.000 0.00 0.00 0.00 1.82
469 496 8.857694 AAAATTACTCCCTCTGTTCGAAAATA 57.142 30.769 0.00 0.00 0.00 1.40
470 497 9.462606 AAAATTACTCCCTCTGTTCGAAAATAT 57.537 29.630 0.00 0.00 0.00 1.28
471 498 9.462606 AAATTACTCCCTCTGTTCGAAAATATT 57.537 29.630 0.00 0.00 0.00 1.28
472 499 9.462606 AATTACTCCCTCTGTTCGAAAATATTT 57.537 29.630 0.00 0.00 0.00 1.40
473 500 6.743575 ACTCCCTCTGTTCGAAAATATTTG 57.256 37.500 0.00 0.00 0.00 2.32
474 501 6.238648 ACTCCCTCTGTTCGAAAATATTTGT 58.761 36.000 0.00 0.00 0.00 2.83
475 502 6.715264 ACTCCCTCTGTTCGAAAATATTTGTT 59.285 34.615 0.00 0.00 0.00 2.83
476 503 6.908825 TCCCTCTGTTCGAAAATATTTGTTG 58.091 36.000 0.00 0.00 0.00 3.33
477 504 5.572896 CCCTCTGTTCGAAAATATTTGTTGC 59.427 40.000 0.00 0.00 0.00 4.17
478 505 6.148948 CCTCTGTTCGAAAATATTTGTTGCA 58.851 36.000 0.00 0.00 0.00 4.08
479 506 6.306356 CCTCTGTTCGAAAATATTTGTTGCAG 59.694 38.462 0.00 7.39 0.00 4.41
480 507 6.964908 TCTGTTCGAAAATATTTGTTGCAGA 58.035 32.000 0.00 9.35 0.00 4.26
481 508 7.077605 TCTGTTCGAAAATATTTGTTGCAGAG 58.922 34.615 0.00 0.00 0.00 3.35
482 509 6.964908 TGTTCGAAAATATTTGTTGCAGAGA 58.035 32.000 0.00 0.00 0.00 3.10
483 510 7.592938 TGTTCGAAAATATTTGTTGCAGAGAT 58.407 30.769 0.00 0.00 0.00 2.75
484 511 7.538334 TGTTCGAAAATATTTGTTGCAGAGATG 59.462 33.333 0.00 0.00 0.00 2.90
485 512 6.554419 TCGAAAATATTTGTTGCAGAGATGG 58.446 36.000 0.39 0.00 0.00 3.51
486 513 6.374053 TCGAAAATATTTGTTGCAGAGATGGA 59.626 34.615 0.39 0.00 0.00 3.41
487 514 7.067372 TCGAAAATATTTGTTGCAGAGATGGAT 59.933 33.333 0.39 0.00 0.00 3.41
488 515 7.166970 CGAAAATATTTGTTGCAGAGATGGATG 59.833 37.037 0.39 0.00 0.00 3.51
489 516 7.649533 AAATATTTGTTGCAGAGATGGATGA 57.350 32.000 0.00 0.00 0.00 2.92
490 517 6.879276 ATATTTGTTGCAGAGATGGATGAG 57.121 37.500 0.00 0.00 0.00 2.90
491 518 3.986996 TTGTTGCAGAGATGGATGAGA 57.013 42.857 0.00 0.00 0.00 3.27
492 519 4.498894 TTGTTGCAGAGATGGATGAGAT 57.501 40.909 0.00 0.00 0.00 2.75
493 520 3.805207 TGTTGCAGAGATGGATGAGATG 58.195 45.455 0.00 0.00 0.00 2.90
494 521 3.199289 TGTTGCAGAGATGGATGAGATGT 59.801 43.478 0.00 0.00 0.00 3.06
495 522 3.470645 TGCAGAGATGGATGAGATGTG 57.529 47.619 0.00 0.00 0.00 3.21
496 523 2.770232 TGCAGAGATGGATGAGATGTGT 59.230 45.455 0.00 0.00 0.00 3.72
497 524 3.199289 TGCAGAGATGGATGAGATGTGTT 59.801 43.478 0.00 0.00 0.00 3.32
498 525 4.197750 GCAGAGATGGATGAGATGTGTTT 58.802 43.478 0.00 0.00 0.00 2.83
499 526 5.104817 TGCAGAGATGGATGAGATGTGTTTA 60.105 40.000 0.00 0.00 0.00 2.01
500 527 5.819379 GCAGAGATGGATGAGATGTGTTTAA 59.181 40.000 0.00 0.00 0.00 1.52
501 528 6.018098 GCAGAGATGGATGAGATGTGTTTAAG 60.018 42.308 0.00 0.00 0.00 1.85
502 529 7.046652 CAGAGATGGATGAGATGTGTTTAAGT 58.953 38.462 0.00 0.00 0.00 2.24
503 530 7.551974 CAGAGATGGATGAGATGTGTTTAAGTT 59.448 37.037 0.00 0.00 0.00 2.66
504 531 8.105829 AGAGATGGATGAGATGTGTTTAAGTTT 58.894 33.333 0.00 0.00 0.00 2.66
505 532 8.641498 AGATGGATGAGATGTGTTTAAGTTTT 57.359 30.769 0.00 0.00 0.00 2.43
506 533 9.739276 AGATGGATGAGATGTGTTTAAGTTTTA 57.261 29.630 0.00 0.00 0.00 1.52
507 534 9.994432 GATGGATGAGATGTGTTTAAGTTTTAG 57.006 33.333 0.00 0.00 0.00 1.85
508 535 9.739276 ATGGATGAGATGTGTTTAAGTTTTAGA 57.261 29.630 0.00 0.00 0.00 2.10
509 536 9.739276 TGGATGAGATGTGTTTAAGTTTTAGAT 57.261 29.630 0.00 0.00 0.00 1.98
539 566 8.682710 TCTATTTTTATTCATTTCTCCAACGGG 58.317 33.333 0.00 0.00 0.00 5.28
540 567 6.658188 TTTTTATTCATTTCTCCAACGGGT 57.342 33.333 0.00 0.00 34.93 5.28
541 568 7.762588 TTTTTATTCATTTCTCCAACGGGTA 57.237 32.000 0.00 0.00 34.93 3.69
542 569 7.948034 TTTTATTCATTTCTCCAACGGGTAT 57.052 32.000 0.00 0.00 34.93 2.73
543 570 7.948034 TTTATTCATTTCTCCAACGGGTATT 57.052 32.000 0.00 0.00 34.93 1.89
544 571 7.948034 TTATTCATTTCTCCAACGGGTATTT 57.052 32.000 0.00 0.00 34.93 1.40
545 572 6.850752 ATTCATTTCTCCAACGGGTATTTT 57.149 33.333 0.00 0.00 34.93 1.82
546 573 5.637006 TCATTTCTCCAACGGGTATTTTG 57.363 39.130 0.00 0.00 34.93 2.44
547 574 4.461081 TCATTTCTCCAACGGGTATTTTGG 59.539 41.667 0.00 0.00 43.29 3.28
548 575 2.500392 TCTCCAACGGGTATTTTGGG 57.500 50.000 0.66 0.00 42.35 4.12
549 576 1.986631 TCTCCAACGGGTATTTTGGGA 59.013 47.619 0.66 0.00 42.35 4.37
550 577 2.089201 CTCCAACGGGTATTTTGGGAC 58.911 52.381 0.66 0.00 42.35 4.46
551 578 0.806241 CCAACGGGTATTTTGGGACG 59.194 55.000 0.00 0.00 38.96 4.79
552 579 0.806241 CAACGGGTATTTTGGGACGG 59.194 55.000 0.00 0.00 0.00 4.79
553 580 0.691904 AACGGGTATTTTGGGACGGA 59.308 50.000 0.00 0.00 0.00 4.69
554 581 0.251073 ACGGGTATTTTGGGACGGAG 59.749 55.000 0.00 0.00 0.00 4.63
555 582 0.538118 CGGGTATTTTGGGACGGAGA 59.462 55.000 0.00 0.00 0.00 3.71
556 583 1.472728 CGGGTATTTTGGGACGGAGAG 60.473 57.143 0.00 0.00 0.00 3.20
557 584 1.835531 GGGTATTTTGGGACGGAGAGA 59.164 52.381 0.00 0.00 0.00 3.10
558 585 2.158943 GGGTATTTTGGGACGGAGAGAG 60.159 54.545 0.00 0.00 0.00 3.20
559 586 2.500504 GGTATTTTGGGACGGAGAGAGT 59.499 50.000 0.00 0.00 0.00 3.24
560 587 3.703052 GGTATTTTGGGACGGAGAGAGTA 59.297 47.826 0.00 0.00 0.00 2.59
561 588 3.889520 ATTTTGGGACGGAGAGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
562 589 1.553706 TTTGGGACGGAGAGAGTACC 58.446 55.000 0.00 0.00 42.94 3.34
564 591 0.629596 TGGGACGGAGAGAGTACCAT 59.370 55.000 0.00 0.00 46.98 3.55
565 592 1.848388 TGGGACGGAGAGAGTACCATA 59.152 52.381 0.00 0.00 46.98 2.74
566 593 2.228925 GGGACGGAGAGAGTACCATAC 58.771 57.143 0.00 0.00 42.20 2.39
567 594 2.158638 GGGACGGAGAGAGTACCATACT 60.159 54.545 0.00 0.00 42.20 2.12
643 670 1.269723 GCCGGTCTCCAAAAGAAAAGG 59.730 52.381 1.90 0.00 35.21 3.11
650 679 6.627287 CGGTCTCCAAAAGAAAAGGAAAAACT 60.627 38.462 0.00 0.00 35.21 2.66
731 761 2.016704 CGGATGACTCGCATACCGC 61.017 63.158 0.00 0.00 39.23 5.68
756 800 4.439974 CCGTCATCCTCTTTTCTCTCTCTG 60.440 50.000 0.00 0.00 0.00 3.35
889 944 4.720046 TGCGGGTATAAATTATTCTGGCA 58.280 39.130 0.00 0.00 0.00 4.92
904 966 4.672251 GCAATGGAGCCATGGACT 57.328 55.556 18.40 12.49 36.68 3.85
942 1004 3.634910 GGTAGTGAGACATCTCTCTTCCC 59.365 52.174 18.68 14.67 42.83 3.97
954 1016 0.460987 CTCTTCCCCGTGCACATCTC 60.461 60.000 18.64 0.00 0.00 2.75
979 1041 6.457934 CCATCTTCGTCAATTCCTTGATCAAG 60.458 42.308 25.75 25.75 43.08 3.02
980 1042 4.393062 TCTTCGTCAATTCCTTGATCAAGC 59.607 41.667 27.01 12.32 43.08 4.01
981 1043 3.009723 TCGTCAATTCCTTGATCAAGCC 58.990 45.455 27.01 9.02 43.08 4.35
982 1044 2.223112 CGTCAATTCCTTGATCAAGCCG 60.223 50.000 27.01 15.99 43.08 5.52
983 1045 3.009723 GTCAATTCCTTGATCAAGCCGA 58.990 45.455 27.01 17.88 43.08 5.54
984 1046 3.064545 GTCAATTCCTTGATCAAGCCGAG 59.935 47.826 27.01 14.99 43.08 4.63
985 1047 1.673168 ATTCCTTGATCAAGCCGAGC 58.327 50.000 27.01 0.00 37.11 5.03
986 1048 0.392998 TTCCTTGATCAAGCCGAGCC 60.393 55.000 27.01 0.00 37.11 4.70
987 1049 2.176273 CCTTGATCAAGCCGAGCCG 61.176 63.158 27.01 10.09 37.11 5.52
988 1050 2.817423 CTTGATCAAGCCGAGCCGC 61.817 63.158 21.96 0.00 0.00 6.53
1083 1145 2.043248 GTAGGAGGAGGCGGTGGA 60.043 66.667 0.00 0.00 0.00 4.02
1100 1162 1.001393 GAGTTTGGGGCGGGAATGA 60.001 57.895 0.00 0.00 0.00 2.57
1101 1163 1.000896 AGTTTGGGGCGGGAATGAG 60.001 57.895 0.00 0.00 0.00 2.90
1180 1242 4.193334 CGAGCGCCTCCGTGATGA 62.193 66.667 2.29 0.00 36.67 2.92
1181 1243 2.419198 GAGCGCCTCCGTGATGAT 59.581 61.111 2.29 0.00 36.67 2.45
1182 1244 1.663074 GAGCGCCTCCGTGATGATC 60.663 63.158 2.29 0.00 36.67 2.92
1183 1245 2.663188 GCGCCTCCGTGATGATCC 60.663 66.667 0.00 0.00 36.67 3.36
1184 1246 2.029666 CGCCTCCGTGATGATCCC 59.970 66.667 0.00 0.00 0.00 3.85
1185 1247 2.029666 GCCTCCGTGATGATCCCG 59.970 66.667 0.00 0.00 0.00 5.14
1186 1248 2.498941 GCCTCCGTGATGATCCCGA 61.499 63.158 0.00 0.00 0.00 5.14
1187 1249 1.662608 CCTCCGTGATGATCCCGAG 59.337 63.158 0.00 0.00 0.00 4.63
1188 1250 1.006805 CTCCGTGATGATCCCGAGC 60.007 63.158 0.00 0.00 0.00 5.03
1189 1251 2.355126 CCGTGATGATCCCGAGCG 60.355 66.667 0.00 0.00 0.00 5.03
1196 1258 4.208686 GATCCCGAGCGCCGAAGT 62.209 66.667 17.96 4.83 41.76 3.01
1220 1282 0.037447 GAAGGCAGTTCCTCCTTGCT 59.963 55.000 0.00 0.00 46.94 3.91
1801 1906 4.996434 ACACCAGCAGCAGACGCC 62.996 66.667 0.00 0.00 39.83 5.68
1802 1907 4.694233 CACCAGCAGCAGACGCCT 62.694 66.667 0.00 0.00 39.83 5.52
1803 1908 4.385405 ACCAGCAGCAGACGCCTC 62.385 66.667 0.00 0.00 39.83 4.70
1804 1909 4.079850 CCAGCAGCAGACGCCTCT 62.080 66.667 0.00 0.00 39.83 3.69
2102 2221 1.398071 GCCGTTTCTTTTTCGAGACCG 60.398 52.381 0.00 0.00 37.07 4.79
2147 2268 2.286025 GTGACGCCGAAACAACTAACTT 59.714 45.455 0.00 0.00 0.00 2.66
2253 2374 6.966632 GCATTATTGTTTTGACGCTAGATGAA 59.033 34.615 0.00 0.00 0.00 2.57
2255 2376 7.667043 TTATTGTTTTGACGCTAGATGAAGT 57.333 32.000 0.00 0.00 0.00 3.01
2275 2406 1.725665 CTGCATGGATTGACTGCCG 59.274 57.895 0.00 0.00 35.02 5.69
2276 2407 1.002257 TGCATGGATTGACTGCCGT 60.002 52.632 0.00 0.00 35.02 5.68
2280 2411 2.483013 GCATGGATTGACTGCCGTAGTA 60.483 50.000 0.00 0.00 40.53 1.82
2281 2412 2.953466 TGGATTGACTGCCGTAGTAC 57.047 50.000 0.00 0.00 40.53 2.73
2285 2439 1.527034 TTGACTGCCGTAGTACGACT 58.473 50.000 23.95 0.00 46.05 4.18
2322 2476 3.423123 CGTCCATTTCTTTGTGTCGTAGC 60.423 47.826 0.00 0.00 0.00 3.58
2354 2509 5.872635 ACGTAGCAAATGAATTCATGTGAG 58.127 37.500 33.56 23.64 42.78 3.51
2496 2651 3.535962 GAGGAGGAGGAGCAGCGG 61.536 72.222 0.00 0.00 0.00 5.52
2563 2721 3.665323 GCATGTTAACAGTTCACGAGCTG 60.665 47.826 14.65 9.10 43.96 4.24
2577 2735 2.223525 ACGAGCTGCTCCTAATTACGAC 60.224 50.000 22.97 0.00 0.00 4.34
2607 2765 6.842437 ACAAGATCTAGAAGTACTTGCAGA 57.158 37.500 14.14 14.60 40.72 4.26
2610 2768 6.449635 AGATCTAGAAGTACTTGCAGACTG 57.550 41.667 14.14 0.00 0.00 3.51
2617 2775 1.550976 GTACTTGCAGACTGGTAGGCT 59.449 52.381 4.26 0.00 29.87 4.58
2824 2991 0.039256 TACGGTTGACACTACGTGGC 60.039 55.000 0.00 0.00 42.82 5.01
2859 3026 7.773224 ACATGCATGTACAATTAAGGCTTACTA 59.227 33.333 30.50 0.00 39.68 1.82
2860 3027 7.548196 TGCATGTACAATTAAGGCTTACTAC 57.452 36.000 6.43 5.29 0.00 2.73
2861 3028 7.335627 TGCATGTACAATTAAGGCTTACTACT 58.664 34.615 6.43 0.00 0.00 2.57
2863 3030 8.122952 GCATGTACAATTAAGGCTTACTACTTG 58.877 37.037 6.43 10.58 0.00 3.16
2864 3031 8.612619 CATGTACAATTAAGGCTTACTACTTGG 58.387 37.037 6.43 0.00 0.00 3.61
2865 3032 7.682628 TGTACAATTAAGGCTTACTACTTGGT 58.317 34.615 6.43 1.96 0.00 3.67
2866 3033 8.158789 TGTACAATTAAGGCTTACTACTTGGTT 58.841 33.333 6.43 0.00 0.00 3.67
2867 3034 7.683437 ACAATTAAGGCTTACTACTTGGTTC 57.317 36.000 6.43 0.00 0.00 3.62
2868 3035 7.228590 ACAATTAAGGCTTACTACTTGGTTCA 58.771 34.615 6.43 0.00 0.00 3.18
2869 3036 7.390718 ACAATTAAGGCTTACTACTTGGTTCAG 59.609 37.037 6.43 0.00 0.00 3.02
2870 3037 4.976540 AAGGCTTACTACTTGGTTCAGT 57.023 40.909 0.00 0.00 0.00 3.41
2871 3038 7.543359 TTAAGGCTTACTACTTGGTTCAGTA 57.457 36.000 6.43 0.00 0.00 2.74
2872 3039 5.402997 AGGCTTACTACTTGGTTCAGTAC 57.597 43.478 0.00 0.00 0.00 2.73
2878 3045 4.401925 ACTACTTGGTTCAGTACGTACCT 58.598 43.478 21.80 6.95 36.08 3.08
2999 3217 7.987649 TGGGGTAAAATAATACATTCGACAAC 58.012 34.615 0.00 0.00 0.00 3.32
3101 3322 6.463995 TGGTATCCAATGTTTAGATTTGCC 57.536 37.500 0.00 0.00 0.00 4.52
3102 3323 5.954752 TGGTATCCAATGTTTAGATTTGCCA 59.045 36.000 0.00 0.00 0.00 4.92
3103 3324 6.438741 TGGTATCCAATGTTTAGATTTGCCAA 59.561 34.615 0.00 0.00 0.00 4.52
3104 3325 7.125507 TGGTATCCAATGTTTAGATTTGCCAAT 59.874 33.333 0.00 0.00 0.00 3.16
3105 3326 8.637986 GGTATCCAATGTTTAGATTTGCCAATA 58.362 33.333 0.00 0.00 0.00 1.90
3106 3327 9.463443 GTATCCAATGTTTAGATTTGCCAATAC 57.537 33.333 0.00 0.00 0.00 1.89
3107 3328 7.473735 TCCAATGTTTAGATTTGCCAATACA 57.526 32.000 0.00 0.00 0.00 2.29
3108 3329 8.076910 TCCAATGTTTAGATTTGCCAATACAT 57.923 30.769 0.00 0.00 0.00 2.29
3109 3330 8.538701 TCCAATGTTTAGATTTGCCAATACATT 58.461 29.630 4.39 4.39 35.90 2.71
3110 3331 9.165035 CCAATGTTTAGATTTGCCAATACATTT 57.835 29.630 6.63 0.00 33.95 2.32
3219 3451 9.816787 ATTACTTTTTATCCTAGTTGGTTTCCA 57.183 29.630 0.00 0.00 37.07 3.53
3220 3452 7.520451 ACTTTTTATCCTAGTTGGTTTCCAC 57.480 36.000 0.00 0.00 37.07 4.02
3221 3453 7.295340 ACTTTTTATCCTAGTTGGTTTCCACT 58.705 34.615 0.00 0.00 37.07 4.00
3222 3454 8.442374 ACTTTTTATCCTAGTTGGTTTCCACTA 58.558 33.333 0.00 0.00 37.07 2.74
3223 3455 8.625786 TTTTTATCCTAGTTGGTTTCCACTAC 57.374 34.615 0.00 0.00 37.07 2.73
3224 3456 3.947910 TCCTAGTTGGTTTCCACTACG 57.052 47.619 0.00 0.00 37.07 3.51
3225 3457 2.564062 TCCTAGTTGGTTTCCACTACGG 59.436 50.000 0.00 0.00 37.07 4.02
3226 3458 2.564062 CCTAGTTGGTTTCCACTACGGA 59.436 50.000 0.00 0.00 44.40 4.69
3227 3459 5.240199 TCCTAGTTGGTTTCCACTACGGAA 61.240 45.833 0.00 0.00 43.56 4.30
3228 3460 7.246698 TCCTAGTTGGTTTCCACTACGGAAC 62.247 48.000 0.00 0.00 43.66 3.62
3234 3466 2.273908 TCCACTACGGAACTGCTCC 58.726 57.895 0.00 0.00 42.52 4.70
3235 3467 0.541063 TCCACTACGGAACTGCTCCA 60.541 55.000 0.00 0.00 45.74 3.86
3236 3468 0.389948 CCACTACGGAACTGCTCCAC 60.390 60.000 0.00 0.00 45.74 4.02
3237 3469 0.317160 CACTACGGAACTGCTCCACA 59.683 55.000 0.00 0.00 45.74 4.17
3238 3470 0.317479 ACTACGGAACTGCTCCACAC 59.683 55.000 0.00 0.00 45.74 3.82
3239 3471 0.317160 CTACGGAACTGCTCCACACA 59.683 55.000 0.00 0.00 45.74 3.72
3240 3472 0.032952 TACGGAACTGCTCCACACAC 59.967 55.000 0.00 0.00 45.74 3.82
3241 3473 2.310233 CGGAACTGCTCCACACACG 61.310 63.158 0.00 0.00 45.74 4.49
3242 3474 1.069090 GGAACTGCTCCACACACGA 59.931 57.895 0.00 0.00 44.67 4.35
3243 3475 1.222115 GGAACTGCTCCACACACGAC 61.222 60.000 0.00 0.00 44.67 4.34
3244 3476 0.529773 GAACTGCTCCACACACGACA 60.530 55.000 0.00 0.00 0.00 4.35
3245 3477 0.810031 AACTGCTCCACACACGACAC 60.810 55.000 0.00 0.00 0.00 3.67
3246 3478 1.068083 CTGCTCCACACACGACACT 59.932 57.895 0.00 0.00 0.00 3.55
3247 3479 1.217585 CTGCTCCACACACGACACTG 61.218 60.000 0.00 0.00 0.00 3.66
3248 3480 1.227263 GCTCCACACACGACACTGT 60.227 57.895 0.00 0.00 0.00 3.55
3249 3481 1.490693 GCTCCACACACGACACTGTG 61.491 60.000 6.19 6.19 46.06 3.66
3262 3494 3.013276 ACACTGTGTGTACGATGAGTG 57.987 47.619 13.50 11.35 45.56 3.51
3263 3495 1.721389 CACTGTGTGTACGATGAGTGC 59.279 52.381 0.00 0.00 35.92 4.40
3264 3496 1.339929 ACTGTGTGTACGATGAGTGCA 59.660 47.619 0.00 0.00 43.15 4.57
3268 3500 3.394800 TGTACGATGAGTGCACGAC 57.605 52.632 12.01 10.53 40.53 4.34
3269 3501 0.109458 TGTACGATGAGTGCACGACC 60.109 55.000 12.01 5.60 40.53 4.79
3270 3502 0.109458 GTACGATGAGTGCACGACCA 60.109 55.000 12.01 11.40 35.42 4.02
3271 3503 0.599060 TACGATGAGTGCACGACCAA 59.401 50.000 12.01 0.00 0.00 3.67
3272 3504 0.249699 ACGATGAGTGCACGACCAAA 60.250 50.000 12.01 0.00 0.00 3.28
3273 3505 0.439985 CGATGAGTGCACGACCAAAG 59.560 55.000 12.01 6.02 0.00 2.77
3274 3506 0.798776 GATGAGTGCACGACCAAAGG 59.201 55.000 12.01 0.00 0.00 3.11
3275 3507 0.396435 ATGAGTGCACGACCAAAGGA 59.604 50.000 12.01 0.00 0.00 3.36
3276 3508 0.396435 TGAGTGCACGACCAAAGGAT 59.604 50.000 12.01 0.00 0.00 3.24
3277 3509 1.079503 GAGTGCACGACCAAAGGATC 58.920 55.000 12.01 0.00 0.00 3.36
3278 3510 0.321653 AGTGCACGACCAAAGGATCC 60.322 55.000 12.01 2.48 0.00 3.36
3279 3511 0.605319 GTGCACGACCAAAGGATCCA 60.605 55.000 15.82 0.00 0.00 3.41
3280 3512 0.321564 TGCACGACCAAAGGATCCAG 60.322 55.000 15.82 3.03 0.00 3.86
3281 3513 1.648467 GCACGACCAAAGGATCCAGC 61.648 60.000 15.82 0.00 0.00 4.85
3282 3514 1.079127 ACGACCAAAGGATCCAGCG 60.079 57.895 15.82 10.05 0.00 5.18
3283 3515 1.815421 CGACCAAAGGATCCAGCGG 60.815 63.158 15.82 12.91 0.00 5.52
3284 3516 2.044946 ACCAAAGGATCCAGCGGC 60.045 61.111 15.82 0.00 0.00 6.53
3285 3517 2.830370 CCAAAGGATCCAGCGGCC 60.830 66.667 15.82 0.00 0.00 6.13
3286 3518 2.045045 CAAAGGATCCAGCGGCCA 60.045 61.111 15.82 0.00 0.00 5.36
3287 3519 2.044946 AAAGGATCCAGCGGCCAC 60.045 61.111 15.82 0.00 0.00 5.01
3288 3520 2.606587 AAAGGATCCAGCGGCCACT 61.607 57.895 15.82 0.00 0.00 4.00
3289 3521 2.826777 AAAGGATCCAGCGGCCACTG 62.827 60.000 15.82 14.15 37.42 3.66
3291 3523 4.479993 GATCCAGCGGCCACTGCT 62.480 66.667 15.67 6.52 45.31 4.24
3292 3524 4.479993 ATCCAGCGGCCACTGCTC 62.480 66.667 15.67 0.00 41.72 4.26
3298 3530 4.694233 CGGCCACTGCTCAGCTGT 62.694 66.667 14.67 2.78 41.16 4.40
3303 3535 2.048409 ACTGCTCAGCTGTGCTCG 60.048 61.111 33.41 26.68 39.15 5.03
3304 3536 2.260743 CTGCTCAGCTGTGCTCGA 59.739 61.111 33.41 17.87 36.40 4.04
3305 3537 1.806351 CTGCTCAGCTGTGCTCGAG 60.806 63.158 33.41 22.28 36.40 4.04
3306 3538 2.210341 CTGCTCAGCTGTGCTCGAGA 62.210 60.000 33.41 17.23 36.40 4.04
3307 3539 1.141449 GCTCAGCTGTGCTCGAGAT 59.859 57.895 28.75 0.00 36.40 2.75
3308 3540 0.459934 GCTCAGCTGTGCTCGAGATT 60.460 55.000 28.75 0.00 36.40 2.40
3309 3541 1.558741 CTCAGCTGTGCTCGAGATTC 58.441 55.000 18.75 5.81 36.40 2.52
3310 3542 0.174389 TCAGCTGTGCTCGAGATTCC 59.826 55.000 18.75 0.00 36.40 3.01
3311 3543 0.175302 CAGCTGTGCTCGAGATTCCT 59.825 55.000 18.75 1.81 36.40 3.36
3312 3544 0.459489 AGCTGTGCTCGAGATTCCTC 59.541 55.000 18.75 0.00 30.62 3.71
3313 3545 0.174389 GCTGTGCTCGAGATTCCTCA 59.826 55.000 18.75 4.54 39.39 3.86
3314 3546 1.802136 GCTGTGCTCGAGATTCCTCAG 60.802 57.143 18.75 14.81 39.39 3.35
3315 3547 0.174389 TGTGCTCGAGATTCCTCAGC 59.826 55.000 18.75 0.00 40.61 4.26
3316 3548 0.459489 GTGCTCGAGATTCCTCAGCT 59.541 55.000 18.75 0.00 40.72 4.24
3317 3549 0.743688 TGCTCGAGATTCCTCAGCTC 59.256 55.000 18.75 0.00 40.72 4.09
3326 3558 6.704512 GAGATTCCTCAGCTCGATTTAATC 57.295 41.667 0.00 0.00 39.24 1.75
3327 3559 5.344665 GAGATTCCTCAGCTCGATTTAATCG 59.655 44.000 19.85 19.85 44.91 3.34
3328 3560 7.008442 GAGATTCCTCAGCTCGATTTAATCGT 61.008 42.308 23.82 5.29 44.43 3.73
3329 3561 8.721841 GAGATTCCTCAGCTCGATTTAATCGTC 61.722 44.444 23.82 17.19 44.43 4.20
3339 3571 4.778842 GATTTAATCGTCGTGCATGAGT 57.221 40.909 9.39 0.00 0.00 3.41
3340 3572 4.752224 GATTTAATCGTCGTGCATGAGTC 58.248 43.478 9.39 0.00 0.00 3.36
3341 3573 1.822581 TAATCGTCGTGCATGAGTCG 58.177 50.000 9.39 10.70 0.00 4.18
3342 3574 0.109272 AATCGTCGTGCATGAGTCGT 60.109 50.000 9.39 0.00 0.00 4.34
3343 3575 0.109272 ATCGTCGTGCATGAGTCGTT 60.109 50.000 9.39 2.83 0.00 3.85
3344 3576 0.728129 TCGTCGTGCATGAGTCGTTC 60.728 55.000 9.39 0.00 0.00 3.95
3345 3577 1.001745 CGTCGTGCATGAGTCGTTCA 61.002 55.000 9.39 0.00 40.85 3.18
3346 3578 1.136690 GTCGTGCATGAGTCGTTCAA 58.863 50.000 9.39 0.00 39.77 2.69
3347 3579 1.525197 GTCGTGCATGAGTCGTTCAAA 59.475 47.619 9.39 0.00 39.77 2.69
3348 3580 1.525197 TCGTGCATGAGTCGTTCAAAC 59.475 47.619 3.97 0.00 39.77 2.93
3349 3581 1.526887 CGTGCATGAGTCGTTCAAACT 59.473 47.619 0.00 0.00 39.77 2.66
3350 3582 2.032894 CGTGCATGAGTCGTTCAAACTT 60.033 45.455 0.00 0.00 39.77 2.66
3351 3583 3.546020 CGTGCATGAGTCGTTCAAACTTT 60.546 43.478 0.00 0.00 39.77 2.66
3352 3584 3.725740 GTGCATGAGTCGTTCAAACTTTG 59.274 43.478 0.00 0.00 39.77 2.77
3353 3585 3.376859 TGCATGAGTCGTTCAAACTTTGT 59.623 39.130 0.00 0.00 39.77 2.83
3354 3586 3.968724 GCATGAGTCGTTCAAACTTTGTC 59.031 43.478 0.00 0.00 39.77 3.18
3355 3587 3.918258 TGAGTCGTTCAAACTTTGTCG 57.082 42.857 1.44 8.04 31.34 4.35
3356 3588 3.255725 TGAGTCGTTCAAACTTTGTCGT 58.744 40.909 15.50 4.48 31.34 4.34
3357 3589 3.305094 TGAGTCGTTCAAACTTTGTCGTC 59.695 43.478 15.50 12.29 31.34 4.20
3358 3590 2.606272 AGTCGTTCAAACTTTGTCGTCC 59.394 45.455 15.50 10.66 33.65 4.79
3359 3591 1.935199 TCGTTCAAACTTTGTCGTCCC 59.065 47.619 15.50 0.00 33.65 4.46
3360 3592 1.003223 CGTTCAAACTTTGTCGTCCCC 60.003 52.381 1.44 0.00 0.00 4.81
3361 3593 2.018515 GTTCAAACTTTGTCGTCCCCA 58.981 47.619 1.44 0.00 0.00 4.96
3362 3594 2.621526 GTTCAAACTTTGTCGTCCCCAT 59.378 45.455 1.44 0.00 0.00 4.00
3363 3595 3.773418 TCAAACTTTGTCGTCCCCATA 57.227 42.857 1.44 0.00 0.00 2.74
3364 3596 3.670625 TCAAACTTTGTCGTCCCCATAG 58.329 45.455 1.44 0.00 0.00 2.23
3365 3597 2.109425 AACTTTGTCGTCCCCATAGC 57.891 50.000 0.00 0.00 0.00 2.97
3366 3598 0.981183 ACTTTGTCGTCCCCATAGCA 59.019 50.000 0.00 0.00 0.00 3.49
3367 3599 1.559682 ACTTTGTCGTCCCCATAGCAT 59.440 47.619 0.00 0.00 0.00 3.79
3368 3600 2.026262 ACTTTGTCGTCCCCATAGCATT 60.026 45.455 0.00 0.00 0.00 3.56
3369 3601 2.036958 TTGTCGTCCCCATAGCATTG 57.963 50.000 0.00 0.00 0.00 2.82
3370 3602 0.463654 TGTCGTCCCCATAGCATTGC 60.464 55.000 0.00 0.00 0.00 3.56
3371 3603 0.179045 GTCGTCCCCATAGCATTGCT 60.179 55.000 16.63 16.63 43.41 3.91
3372 3604 0.106708 TCGTCCCCATAGCATTGCTC 59.893 55.000 15.81 0.00 40.44 4.26
3405 3637 6.059484 ACTAAGGATCGTTCCAAGTTTTTGA 58.941 36.000 14.83 0.00 45.30 2.69
3408 3640 5.588240 AGGATCGTTCCAAGTTTTTGAAAC 58.412 37.500 14.83 0.00 45.30 2.78
3426 3660 8.795842 TTTGAAACACTCCAGTTTTACTTCTA 57.204 30.769 0.00 0.00 41.48 2.10
3484 3723 2.498481 CCATTTCTGCATGGTCAATGGT 59.502 45.455 11.57 0.00 39.32 3.55
3489 3728 2.964464 TCTGCATGGTCAATGGTGTTTT 59.036 40.909 0.00 0.00 36.71 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 7.971168 TGCTTTTTAAGTCTTGAATTTCGAACA 59.029 29.630 0.00 0.00 0.00 3.18
19 20 9.607285 TCGTATGCTTTTTAAGTCTTGAATTTC 57.393 29.630 0.00 0.00 0.00 2.17
57 58 4.944048 ACCAAATCGTCCCTTTTTCTTTG 58.056 39.130 0.00 0.00 0.00 2.77
60 61 5.336451 GCATTACCAAATCGTCCCTTTTTCT 60.336 40.000 0.00 0.00 0.00 2.52
61 62 4.862574 GCATTACCAAATCGTCCCTTTTTC 59.137 41.667 0.00 0.00 0.00 2.29
63 64 3.119637 CGCATTACCAAATCGTCCCTTTT 60.120 43.478 0.00 0.00 0.00 2.27
87 88 4.750098 ACGATAAGAATCCGCATGGTTAAG 59.250 41.667 0.00 0.00 36.30 1.85
106 107 4.827284 ACTTGAATTTTGGACCTCAACGAT 59.173 37.500 0.00 0.00 34.67 3.73
108 109 4.275936 AGACTTGAATTTTGGACCTCAACG 59.724 41.667 0.00 0.00 34.67 4.10
114 115 4.145052 ACAGGAGACTTGAATTTTGGACC 58.855 43.478 0.00 0.00 40.21 4.46
133 134 4.753610 TGTGAGAAAGCATGAAAGAGACAG 59.246 41.667 0.00 0.00 0.00 3.51
179 181 7.151308 CCACATGCAACCTAACTTCAAAAATA 58.849 34.615 0.00 0.00 0.00 1.40
180 182 5.990996 CCACATGCAACCTAACTTCAAAAAT 59.009 36.000 0.00 0.00 0.00 1.82
185 187 2.884012 CACCACATGCAACCTAACTTCA 59.116 45.455 0.00 0.00 0.00 3.02
186 188 2.228822 CCACCACATGCAACCTAACTTC 59.771 50.000 0.00 0.00 0.00 3.01
215 242 3.492102 ATATGACTTGAACCCCGATGG 57.508 47.619 0.00 0.00 41.37 3.51
235 262 1.687660 TGTGACCACCAACGCTAAGTA 59.312 47.619 0.00 0.00 0.00 2.24
281 308 1.154225 GATGCCTTCAACAACGCCG 60.154 57.895 0.00 0.00 0.00 6.46
282 309 1.448985 TAGATGCCTTCAACAACGCC 58.551 50.000 0.00 0.00 0.00 5.68
283 310 2.677836 TCATAGATGCCTTCAACAACGC 59.322 45.455 0.00 0.00 0.00 4.84
284 311 3.242091 CGTCATAGATGCCTTCAACAACG 60.242 47.826 0.00 0.00 0.00 4.10
285 312 3.932710 TCGTCATAGATGCCTTCAACAAC 59.067 43.478 0.00 0.00 0.00 3.32
286 313 3.932710 GTCGTCATAGATGCCTTCAACAA 59.067 43.478 0.00 0.00 0.00 2.83
287 314 3.195610 AGTCGTCATAGATGCCTTCAACA 59.804 43.478 0.00 0.00 0.00 3.33
288 315 3.786635 AGTCGTCATAGATGCCTTCAAC 58.213 45.455 0.00 0.00 0.00 3.18
289 316 4.081697 TGAAGTCGTCATAGATGCCTTCAA 60.082 41.667 9.48 0.00 0.00 2.69
290 317 3.447229 TGAAGTCGTCATAGATGCCTTCA 59.553 43.478 8.20 8.20 0.00 3.02
302 329 5.077134 ACATGAGATTGATGAAGTCGTCA 57.923 39.130 0.00 0.00 41.67 4.35
312 339 5.292834 GTCGACACATCAACATGAGATTGAT 59.707 40.000 11.55 1.57 45.57 2.57
324 351 3.149981 AGAGACTGAGTCGACACATCAA 58.850 45.455 19.50 0.00 37.67 2.57
325 352 2.744741 GAGAGACTGAGTCGACACATCA 59.255 50.000 19.50 11.89 37.67 3.07
327 354 3.006940 GAGAGAGACTGAGTCGACACAT 58.993 50.000 19.50 7.88 37.67 3.21
342 369 1.603456 TATGAGCGCCTCAGAGAGAG 58.397 55.000 2.29 0.00 44.08 3.20
343 370 1.952990 CTTATGAGCGCCTCAGAGAGA 59.047 52.381 2.29 0.00 44.08 3.10
344 371 1.680735 ACTTATGAGCGCCTCAGAGAG 59.319 52.381 19.71 15.63 44.08 3.20
347 374 0.461548 CCACTTATGAGCGCCTCAGA 59.538 55.000 2.29 1.44 44.08 3.27
353 380 2.159226 ACACTCTACCACTTATGAGCGC 60.159 50.000 0.00 0.00 0.00 5.92
359 386 3.323691 TGCACACACACTCTACCACTTAT 59.676 43.478 0.00 0.00 0.00 1.73
364 391 3.678921 GTGCACACACACTCTACCA 57.321 52.632 13.17 0.00 46.61 3.25
373 400 1.314581 GAATAAACGCGTGCACACAC 58.685 50.000 14.98 4.47 43.76 3.82
378 405 0.993532 CCTACGAATAAACGCGTGCA 59.006 50.000 14.98 3.42 41.35 4.57
379 406 1.270971 TCCTACGAATAAACGCGTGC 58.729 50.000 14.98 0.00 41.35 5.34
380 407 3.302221 CCATTCCTACGAATAAACGCGTG 60.302 47.826 14.98 0.24 41.35 5.34
381 408 2.861935 CCATTCCTACGAATAAACGCGT 59.138 45.455 5.58 5.58 43.86 6.01
393 420 1.265095 CGCACATGCATCCATTCCTAC 59.735 52.381 0.00 0.00 42.21 3.18
395 422 0.394762 ACGCACATGCATCCATTCCT 60.395 50.000 0.00 0.00 42.21 3.36
402 429 4.997905 AATACTCATACGCACATGCATC 57.002 40.909 0.00 0.00 42.21 3.91
403 430 4.555313 GCAAATACTCATACGCACATGCAT 60.555 41.667 4.49 0.00 42.21 3.96
418 445 6.627243 TCAACATAGTACAGACGCAAATACT 58.373 36.000 0.00 0.00 0.00 2.12
419 446 6.880822 TCAACATAGTACAGACGCAAATAC 57.119 37.500 0.00 0.00 0.00 1.89
421 448 6.795098 TTTCAACATAGTACAGACGCAAAT 57.205 33.333 0.00 0.00 0.00 2.32
422 449 6.606234 TTTTCAACATAGTACAGACGCAAA 57.394 33.333 0.00 0.00 0.00 3.68
423 450 6.606234 TTTTTCAACATAGTACAGACGCAA 57.394 33.333 0.00 0.00 0.00 4.85
448 475 7.881232 ACAAATATTTTCGAACAGAGGGAGTAA 59.119 33.333 0.00 0.00 0.00 2.24
450 477 6.238648 ACAAATATTTTCGAACAGAGGGAGT 58.761 36.000 0.00 0.00 0.00 3.85
451 478 6.743575 ACAAATATTTTCGAACAGAGGGAG 57.256 37.500 0.00 0.00 0.00 4.30
452 479 6.569610 GCAACAAATATTTTCGAACAGAGGGA 60.570 38.462 0.00 0.00 0.00 4.20
454 481 6.148948 TGCAACAAATATTTTCGAACAGAGG 58.851 36.000 0.00 0.00 0.00 3.69
456 483 6.964908 TCTGCAACAAATATTTTCGAACAGA 58.035 32.000 0.00 5.90 0.00 3.41
458 485 6.964908 TCTCTGCAACAAATATTTTCGAACA 58.035 32.000 0.00 0.00 0.00 3.18
459 486 7.008628 CCATCTCTGCAACAAATATTTTCGAAC 59.991 37.037 0.00 0.00 0.00 3.95
460 487 7.028962 CCATCTCTGCAACAAATATTTTCGAA 58.971 34.615 0.00 0.00 0.00 3.71
461 488 6.374053 TCCATCTCTGCAACAAATATTTTCGA 59.626 34.615 0.00 0.00 0.00 3.71
462 489 6.554419 TCCATCTCTGCAACAAATATTTTCG 58.446 36.000 0.00 0.00 0.00 3.46
463 490 8.192774 TCATCCATCTCTGCAACAAATATTTTC 58.807 33.333 0.00 0.00 0.00 2.29
464 491 8.070034 TCATCCATCTCTGCAACAAATATTTT 57.930 30.769 0.00 0.00 0.00 1.82
465 492 7.558807 TCTCATCCATCTCTGCAACAAATATTT 59.441 33.333 0.00 0.00 0.00 1.40
466 493 7.058525 TCTCATCCATCTCTGCAACAAATATT 58.941 34.615 0.00 0.00 0.00 1.28
467 494 6.598503 TCTCATCCATCTCTGCAACAAATAT 58.401 36.000 0.00 0.00 0.00 1.28
468 495 5.993055 TCTCATCCATCTCTGCAACAAATA 58.007 37.500 0.00 0.00 0.00 1.40
469 496 4.851843 TCTCATCCATCTCTGCAACAAAT 58.148 39.130 0.00 0.00 0.00 2.32
470 497 4.290711 TCTCATCCATCTCTGCAACAAA 57.709 40.909 0.00 0.00 0.00 2.83
471 498 3.986996 TCTCATCCATCTCTGCAACAA 57.013 42.857 0.00 0.00 0.00 2.83
472 499 3.199289 ACATCTCATCCATCTCTGCAACA 59.801 43.478 0.00 0.00 0.00 3.33
473 500 3.560481 CACATCTCATCCATCTCTGCAAC 59.440 47.826 0.00 0.00 0.00 4.17
474 501 3.199289 ACACATCTCATCCATCTCTGCAA 59.801 43.478 0.00 0.00 0.00 4.08
475 502 2.770232 ACACATCTCATCCATCTCTGCA 59.230 45.455 0.00 0.00 0.00 4.41
476 503 3.472283 ACACATCTCATCCATCTCTGC 57.528 47.619 0.00 0.00 0.00 4.26
477 504 7.046652 ACTTAAACACATCTCATCCATCTCTG 58.953 38.462 0.00 0.00 0.00 3.35
478 505 7.192852 ACTTAAACACATCTCATCCATCTCT 57.807 36.000 0.00 0.00 0.00 3.10
479 506 7.856145 AACTTAAACACATCTCATCCATCTC 57.144 36.000 0.00 0.00 0.00 2.75
480 507 8.641498 AAAACTTAAACACATCTCATCCATCT 57.359 30.769 0.00 0.00 0.00 2.90
481 508 9.994432 CTAAAACTTAAACACATCTCATCCATC 57.006 33.333 0.00 0.00 0.00 3.51
482 509 9.739276 TCTAAAACTTAAACACATCTCATCCAT 57.261 29.630 0.00 0.00 0.00 3.41
483 510 9.739276 ATCTAAAACTTAAACACATCTCATCCA 57.261 29.630 0.00 0.00 0.00 3.41
513 540 8.682710 CCCGTTGGAGAAATGAATAAAAATAGA 58.317 33.333 0.00 0.00 0.00 1.98
514 541 8.466798 ACCCGTTGGAGAAATGAATAAAAATAG 58.533 33.333 0.00 0.00 34.81 1.73
515 542 8.356000 ACCCGTTGGAGAAATGAATAAAAATA 57.644 30.769 0.00 0.00 34.81 1.40
516 543 7.239763 ACCCGTTGGAGAAATGAATAAAAAT 57.760 32.000 0.00 0.00 34.81 1.82
517 544 6.658188 ACCCGTTGGAGAAATGAATAAAAA 57.342 33.333 0.00 0.00 34.81 1.94
518 545 7.948034 ATACCCGTTGGAGAAATGAATAAAA 57.052 32.000 0.00 0.00 34.81 1.52
519 546 7.948034 AATACCCGTTGGAGAAATGAATAAA 57.052 32.000 0.00 0.00 34.81 1.40
520 547 7.948034 AAATACCCGTTGGAGAAATGAATAA 57.052 32.000 0.00 0.00 34.81 1.40
521 548 7.147983 CCAAAATACCCGTTGGAGAAATGAATA 60.148 37.037 0.00 0.00 46.11 1.75
522 549 6.350949 CCAAAATACCCGTTGGAGAAATGAAT 60.351 38.462 0.00 0.00 46.11 2.57
523 550 5.047660 CCAAAATACCCGTTGGAGAAATGAA 60.048 40.000 0.00 0.00 46.11 2.57
524 551 4.461081 CCAAAATACCCGTTGGAGAAATGA 59.539 41.667 0.00 0.00 46.11 2.57
525 552 4.381505 CCCAAAATACCCGTTGGAGAAATG 60.382 45.833 4.00 0.00 46.11 2.32
526 553 3.767131 CCCAAAATACCCGTTGGAGAAAT 59.233 43.478 4.00 0.00 46.11 2.17
527 554 3.158676 CCCAAAATACCCGTTGGAGAAA 58.841 45.455 4.00 0.00 46.11 2.52
528 555 2.375845 TCCCAAAATACCCGTTGGAGAA 59.624 45.455 4.00 0.00 46.11 2.87
529 556 1.986631 TCCCAAAATACCCGTTGGAGA 59.013 47.619 4.00 0.00 46.11 3.71
530 557 2.089201 GTCCCAAAATACCCGTTGGAG 58.911 52.381 4.00 0.00 46.11 3.86
531 558 1.611148 CGTCCCAAAATACCCGTTGGA 60.611 52.381 4.00 0.00 46.11 3.53
532 559 0.806241 CGTCCCAAAATACCCGTTGG 59.194 55.000 0.00 0.00 43.37 3.77
533 560 0.806241 CCGTCCCAAAATACCCGTTG 59.194 55.000 0.00 0.00 0.00 4.10
534 561 0.691904 TCCGTCCCAAAATACCCGTT 59.308 50.000 0.00 0.00 0.00 4.44
535 562 0.251073 CTCCGTCCCAAAATACCCGT 59.749 55.000 0.00 0.00 0.00 5.28
536 563 0.538118 TCTCCGTCCCAAAATACCCG 59.462 55.000 0.00 0.00 0.00 5.28
537 564 1.835531 TCTCTCCGTCCCAAAATACCC 59.164 52.381 0.00 0.00 0.00 3.69
538 565 2.500504 ACTCTCTCCGTCCCAAAATACC 59.499 50.000 0.00 0.00 0.00 2.73
539 566 3.889520 ACTCTCTCCGTCCCAAAATAC 57.110 47.619 0.00 0.00 0.00 1.89
540 567 3.703052 GGTACTCTCTCCGTCCCAAAATA 59.297 47.826 0.00 0.00 0.00 1.40
541 568 2.500504 GGTACTCTCTCCGTCCCAAAAT 59.499 50.000 0.00 0.00 0.00 1.82
542 569 1.897802 GGTACTCTCTCCGTCCCAAAA 59.102 52.381 0.00 0.00 0.00 2.44
543 570 1.203087 TGGTACTCTCTCCGTCCCAAA 60.203 52.381 0.00 0.00 0.00 3.28
544 571 0.406750 TGGTACTCTCTCCGTCCCAA 59.593 55.000 0.00 0.00 0.00 4.12
545 572 0.629596 ATGGTACTCTCTCCGTCCCA 59.370 55.000 0.00 0.00 0.00 4.37
546 573 2.158638 AGTATGGTACTCTCTCCGTCCC 60.159 54.545 0.00 0.00 32.47 4.46
547 574 3.211718 AGTATGGTACTCTCTCCGTCC 57.788 52.381 0.00 0.00 32.47 4.79
548 575 5.579564 AAAAGTATGGTACTCTCTCCGTC 57.420 43.478 0.00 0.00 38.26 4.79
549 576 5.997384 AAAAAGTATGGTACTCTCTCCGT 57.003 39.130 0.00 0.00 38.26 4.69
577 604 7.095695 ACCGGGTAGTATGAATTTTCAAATG 57.904 36.000 6.32 0.00 41.13 2.32
581 608 5.350633 CGTACCGGGTAGTATGAATTTTCA 58.649 41.667 7.25 0.00 42.14 2.69
589 616 0.317269 CGTGCGTACCGGGTAGTATG 60.317 60.000 7.25 3.75 33.22 2.39
590 617 1.447317 CCGTGCGTACCGGGTAGTAT 61.447 60.000 7.25 0.00 41.78 2.12
631 658 5.051973 CGCGTAGTTTTTCCTTTTCTTTTGG 60.052 40.000 0.00 0.00 0.00 3.28
643 670 1.783140 AGACACGTCGCGTAGTTTTTC 59.217 47.619 5.77 4.16 38.32 2.29
650 679 2.797850 CGCAAGACACGTCGCGTA 60.798 61.111 5.77 0.00 42.66 4.42
731 761 1.834263 AGAGAAAAGAGGATGACGGGG 59.166 52.381 0.00 0.00 0.00 5.73
889 944 1.489649 CTCTCAGTCCATGGCTCCATT 59.510 52.381 6.96 0.00 33.90 3.16
942 1004 1.293924 GAAGATGGAGATGTGCACGG 58.706 55.000 13.13 0.00 0.00 4.94
954 1016 4.877823 TGATCAAGGAATTGACGAAGATGG 59.122 41.667 0.00 0.00 33.23 3.51
1083 1145 1.000896 CTCATTCCCGCCCCAAACT 60.001 57.895 0.00 0.00 0.00 2.66
1120 1182 0.534203 TTGCTTCCGTCCAACTCCAC 60.534 55.000 0.00 0.00 0.00 4.02
1168 1230 2.029666 CGGGATCATCACGGAGGC 59.970 66.667 0.00 0.00 40.12 4.70
1169 1231 1.662608 CTCGGGATCATCACGGAGG 59.337 63.158 10.02 0.00 44.75 4.30
1170 1232 1.006805 GCTCGGGATCATCACGGAG 60.007 63.158 10.02 6.91 44.75 4.63
1171 1233 2.845550 CGCTCGGGATCATCACGGA 61.846 63.158 10.02 0.00 44.75 4.69
1172 1234 2.355126 CGCTCGGGATCATCACGG 60.355 66.667 10.02 1.12 44.75 4.94
1173 1235 3.032609 GCGCTCGGGATCATCACG 61.033 66.667 1.68 1.68 46.30 4.35
1174 1236 2.663188 GGCGCTCGGGATCATCAC 60.663 66.667 7.64 0.00 0.00 3.06
1175 1237 4.284860 CGGCGCTCGGGATCATCA 62.285 66.667 7.64 0.00 34.75 3.07
1176 1238 3.499929 TTCGGCGCTCGGGATCATC 62.500 63.158 7.64 0.00 39.77 2.92
1177 1239 3.506059 CTTCGGCGCTCGGGATCAT 62.506 63.158 7.64 0.00 39.77 2.45
1178 1240 4.207281 CTTCGGCGCTCGGGATCA 62.207 66.667 7.64 0.00 39.77 2.92
1179 1241 4.208686 ACTTCGGCGCTCGGGATC 62.209 66.667 7.64 0.00 39.77 3.36
1180 1242 4.208686 GACTTCGGCGCTCGGGAT 62.209 66.667 7.64 0.00 39.77 3.85
1329 1391 3.372206 CCTCAATGTTCTTTACGCTCCTG 59.628 47.826 0.00 0.00 0.00 3.86
1338 1400 1.351017 TCCGCCTCCTCAATGTTCTTT 59.649 47.619 0.00 0.00 0.00 2.52
1449 1511 1.206132 CGTACCCTGTGCACATAGGAA 59.794 52.381 32.05 16.12 41.66 3.36
1933 2041 1.742324 CGATCCTCAGCAGCTGCCTA 61.742 60.000 34.39 21.54 43.38 3.93
2020 2128 1.326213 TGAGGCTGAGGCAGTAGAGC 61.326 60.000 9.23 0.00 40.87 4.09
2102 2221 4.451652 GCTGCCAAGCGAGCGAAC 62.452 66.667 0.00 0.00 40.27 3.95
2253 2374 1.460504 CAGTCAATCCATGCAGCACT 58.539 50.000 0.00 0.00 0.00 4.40
2255 2376 1.317431 GGCAGTCAATCCATGCAGCA 61.317 55.000 0.00 0.00 41.78 4.41
2275 2406 3.607310 CGATGATCCTGCAGTCGTACTAC 60.607 52.174 13.81 0.00 0.00 2.73
2276 2407 2.548480 CGATGATCCTGCAGTCGTACTA 59.452 50.000 13.81 0.00 0.00 1.82
2280 2411 0.817654 TTCGATGATCCTGCAGTCGT 59.182 50.000 19.30 10.48 34.24 4.34
2281 2412 1.203928 GTTCGATGATCCTGCAGTCG 58.796 55.000 13.81 14.72 0.00 4.18
2285 2439 0.179111 GGACGTTCGATGATCCTGCA 60.179 55.000 0.00 0.00 0.00 4.41
2322 2476 4.282950 TCATTTGCTACGTACTACGAGG 57.717 45.455 15.49 8.09 46.05 4.63
2354 2509 2.031163 AACCAGACACAGAGCGGC 59.969 61.111 0.00 0.00 0.00 6.53
2388 2543 3.329889 TCTTCCACCTGCGGCCAT 61.330 61.111 2.24 0.00 0.00 4.40
2563 2721 8.186821 TCTTGTTTACTAGTCGTAATTAGGAGC 58.813 37.037 8.09 4.39 37.88 4.70
2584 2742 6.435904 AGTCTGCAAGTACTTCTAGATCTTGT 59.564 38.462 16.99 0.00 38.09 3.16
2595 2753 2.028020 GCCTACCAGTCTGCAAGTACTT 60.028 50.000 1.12 1.12 33.76 2.24
2607 2765 2.985456 GCTGCAGAGCCTACCAGT 59.015 61.111 20.43 0.00 39.57 4.00
2664 2824 3.829026 TGCATAGGTACATAGGCAGAGAG 59.171 47.826 21.41 0.00 37.52 3.20
2665 2825 3.844640 TGCATAGGTACATAGGCAGAGA 58.155 45.455 21.41 0.39 37.52 3.10
2789 2956 1.447945 CGTACAACATGATGCCCACA 58.552 50.000 0.00 0.00 0.00 4.17
2790 2957 0.732571 CCGTACAACATGATGCCCAC 59.267 55.000 0.00 0.00 0.00 4.61
2794 2961 2.482336 TGTCAACCGTACAACATGATGC 59.518 45.455 0.00 0.00 0.00 3.91
2795 2962 3.745975 AGTGTCAACCGTACAACATGATG 59.254 43.478 0.00 0.00 0.00 3.07
2796 2963 4.002906 AGTGTCAACCGTACAACATGAT 57.997 40.909 0.00 0.00 0.00 2.45
2797 2964 3.462483 AGTGTCAACCGTACAACATGA 57.538 42.857 0.00 0.00 0.00 3.07
2801 2968 2.731217 ACGTAGTGTCAACCGTACAAC 58.269 47.619 0.00 0.00 42.51 3.32
2824 2991 2.677337 TGTACATGCATGTGAATCGTGG 59.323 45.455 36.72 7.17 41.89 4.94
2832 2999 5.252969 AGCCTTAATTGTACATGCATGTG 57.747 39.130 36.72 20.22 41.89 3.21
2859 3026 7.467811 CGATTATAGGTACGTACTGAACCAAGT 60.468 40.741 24.07 4.01 35.64 3.16
2860 3027 6.854892 CGATTATAGGTACGTACTGAACCAAG 59.145 42.308 24.07 8.16 35.64 3.61
2861 3028 6.542005 TCGATTATAGGTACGTACTGAACCAA 59.458 38.462 24.07 11.72 35.64 3.67
2863 3030 6.545504 TCGATTATAGGTACGTACTGAACC 57.454 41.667 24.07 10.97 0.00 3.62
2864 3031 7.041780 TCCTTCGATTATAGGTACGTACTGAAC 60.042 40.741 24.07 8.50 33.15 3.18
2865 3032 6.992123 TCCTTCGATTATAGGTACGTACTGAA 59.008 38.462 24.07 13.42 33.15 3.02
2866 3033 6.524734 TCCTTCGATTATAGGTACGTACTGA 58.475 40.000 24.07 13.22 33.15 3.41
2867 3034 6.791887 TCCTTCGATTATAGGTACGTACTG 57.208 41.667 24.07 5.76 33.15 2.74
2868 3035 7.807977 TTTCCTTCGATTATAGGTACGTACT 57.192 36.000 24.07 13.10 33.15 2.73
2869 3036 8.856490 TTTTTCCTTCGATTATAGGTACGTAC 57.144 34.615 17.56 17.56 33.15 3.67
2987 3205 5.946972 ACAAAATATGGGGTTGTCGAATGTA 59.053 36.000 0.00 0.00 29.57 2.29
2993 3211 6.366604 GGTTTTTACAAAATATGGGGTTGTCG 59.633 38.462 0.00 0.00 36.83 4.35
2999 3217 8.628630 ACATTTGGTTTTTACAAAATATGGGG 57.371 30.769 0.00 0.00 40.74 4.96
3046 3265 8.367660 TGGCTACCAATTATTTGACCATTTAA 57.632 30.769 0.00 0.00 34.60 1.52
3047 3266 7.962995 TGGCTACCAATTATTTGACCATTTA 57.037 32.000 0.00 0.00 34.60 1.40
3116 3337 6.507900 TGTATTGGCAAATCGTTCTCAAAAA 58.492 32.000 3.01 0.00 0.00 1.94
3117 3338 6.078202 TGTATTGGCAAATCGTTCTCAAAA 57.922 33.333 3.01 0.00 0.00 2.44
3118 3339 5.697473 TGTATTGGCAAATCGTTCTCAAA 57.303 34.783 3.01 0.00 0.00 2.69
3119 3340 5.895636 ATGTATTGGCAAATCGTTCTCAA 57.104 34.783 3.01 0.00 0.00 3.02
3120 3341 5.639757 CAATGTATTGGCAAATCGTTCTCA 58.360 37.500 3.01 0.00 34.22 3.27
3157 3378 1.075542 TTGTAGCTCGTTTGATGCCG 58.924 50.000 0.00 0.00 0.00 5.69
3195 3420 8.442374 AGTGGAAACCAACTAGGATAAAAAGTA 58.558 33.333 0.00 0.00 41.22 2.24
3217 3449 4.913126 GGAGCAGTTCCGTAGTGG 57.087 61.111 0.00 0.00 35.91 4.00
3224 3456 1.069090 TCGTGTGTGGAGCAGTTCC 59.931 57.895 0.00 0.00 46.98 3.62
3225 3457 0.529773 TGTCGTGTGTGGAGCAGTTC 60.530 55.000 0.00 0.00 0.00 3.01
3226 3458 0.810031 GTGTCGTGTGTGGAGCAGTT 60.810 55.000 0.00 0.00 0.00 3.16
3227 3459 1.227263 GTGTCGTGTGTGGAGCAGT 60.227 57.895 0.00 0.00 0.00 4.40
3228 3460 1.068083 AGTGTCGTGTGTGGAGCAG 59.932 57.895 0.00 0.00 0.00 4.24
3229 3461 1.227234 CAGTGTCGTGTGTGGAGCA 60.227 57.895 0.00 0.00 0.00 4.26
3230 3462 1.227263 ACAGTGTCGTGTGTGGAGC 60.227 57.895 0.00 0.00 0.00 4.70
3231 3463 2.593376 CACAGTGTCGTGTGTGGAG 58.407 57.895 0.00 0.00 42.52 3.86
3232 3464 4.825377 CACAGTGTCGTGTGTGGA 57.175 55.556 0.00 0.00 42.52 4.02
3238 3470 1.713932 CATCGTACACACAGTGTCGTG 59.286 52.381 18.40 18.40 43.92 4.35
3239 3471 1.605232 TCATCGTACACACAGTGTCGT 59.395 47.619 2.14 8.45 43.92 4.34
3240 3472 2.242564 CTCATCGTACACACAGTGTCG 58.757 52.381 2.14 5.02 43.92 4.35
3241 3473 2.980476 CACTCATCGTACACACAGTGTC 59.020 50.000 2.14 0.00 43.92 3.67
3243 3475 1.721389 GCACTCATCGTACACACAGTG 59.279 52.381 0.00 0.00 39.75 3.66
3244 3476 1.339929 TGCACTCATCGTACACACAGT 59.660 47.619 0.00 0.00 0.00 3.55
3245 3477 1.721389 GTGCACTCATCGTACACACAG 59.279 52.381 10.32 0.00 39.28 3.66
3246 3478 1.778334 GTGCACTCATCGTACACACA 58.222 50.000 10.32 0.00 39.28 3.72
3247 3479 0.708370 CGTGCACTCATCGTACACAC 59.292 55.000 16.19 0.00 39.41 3.82
3248 3480 0.594110 TCGTGCACTCATCGTACACA 59.406 50.000 16.19 0.00 39.41 3.72
3249 3481 0.982673 GTCGTGCACTCATCGTACAC 59.017 55.000 16.19 0.00 36.69 2.90
3250 3482 0.109458 GGTCGTGCACTCATCGTACA 60.109 55.000 16.19 0.00 0.00 2.90
3251 3483 0.109458 TGGTCGTGCACTCATCGTAC 60.109 55.000 16.19 2.06 0.00 3.67
3252 3484 0.599060 TTGGTCGTGCACTCATCGTA 59.401 50.000 16.19 0.00 0.00 3.43
3253 3485 0.249699 TTTGGTCGTGCACTCATCGT 60.250 50.000 16.19 0.00 0.00 3.73
3254 3486 0.439985 CTTTGGTCGTGCACTCATCG 59.560 55.000 16.19 0.55 0.00 3.84
3255 3487 0.798776 CCTTTGGTCGTGCACTCATC 59.201 55.000 16.19 1.86 0.00 2.92
3256 3488 0.396435 TCCTTTGGTCGTGCACTCAT 59.604 50.000 16.19 0.00 0.00 2.90
3257 3489 0.396435 ATCCTTTGGTCGTGCACTCA 59.604 50.000 16.19 7.75 0.00 3.41
3258 3490 1.079503 GATCCTTTGGTCGTGCACTC 58.920 55.000 16.19 7.79 0.00 3.51
3259 3491 0.321653 GGATCCTTTGGTCGTGCACT 60.322 55.000 16.19 0.00 0.00 4.40
3260 3492 0.605319 TGGATCCTTTGGTCGTGCAC 60.605 55.000 14.23 6.82 0.00 4.57
3261 3493 0.321564 CTGGATCCTTTGGTCGTGCA 60.322 55.000 14.23 0.00 0.00 4.57
3262 3494 1.648467 GCTGGATCCTTTGGTCGTGC 61.648 60.000 14.23 0.12 0.00 5.34
3263 3495 1.361668 CGCTGGATCCTTTGGTCGTG 61.362 60.000 14.23 0.00 0.00 4.35
3264 3496 1.079127 CGCTGGATCCTTTGGTCGT 60.079 57.895 14.23 0.00 0.00 4.34
3265 3497 1.815421 CCGCTGGATCCTTTGGTCG 60.815 63.158 14.23 7.04 0.00 4.79
3266 3498 2.115291 GCCGCTGGATCCTTTGGTC 61.115 63.158 14.23 4.69 0.00 4.02
3267 3499 2.044946 GCCGCTGGATCCTTTGGT 60.045 61.111 14.23 0.00 0.00 3.67
3268 3500 2.830370 GGCCGCTGGATCCTTTGG 60.830 66.667 14.23 12.39 0.00 3.28
3269 3501 2.045045 TGGCCGCTGGATCCTTTG 60.045 61.111 14.23 4.50 0.00 2.77
3270 3502 2.044946 GTGGCCGCTGGATCCTTT 60.045 61.111 14.23 0.00 0.00 3.11
3271 3503 3.011517 AGTGGCCGCTGGATCCTT 61.012 61.111 20.48 0.00 0.00 3.36
3272 3504 3.790437 CAGTGGCCGCTGGATCCT 61.790 66.667 34.42 1.79 33.11 3.24
3274 3506 4.479993 AGCAGTGGCCGCTGGATC 62.480 66.667 39.76 26.53 42.56 3.36
3275 3507 4.479993 GAGCAGTGGCCGCTGGAT 62.480 66.667 39.76 23.81 40.63 3.41
3281 3513 4.694233 ACAGCTGAGCAGTGGCCG 62.694 66.667 23.35 0.00 42.56 6.13
3282 3514 3.054503 CACAGCTGAGCAGTGGCC 61.055 66.667 23.35 0.00 41.28 5.36
3283 3515 3.735029 GCACAGCTGAGCAGTGGC 61.735 66.667 28.20 17.34 44.30 5.01
3284 3516 2.032223 AGCACAGCTGAGCAGTGG 59.968 61.111 32.94 12.25 44.30 4.00
3285 3517 2.381188 CGAGCACAGCTGAGCAGTG 61.381 63.158 32.94 23.36 46.31 3.66
3286 3518 2.048409 CGAGCACAGCTGAGCAGT 60.048 61.111 32.94 17.15 39.88 4.40
3287 3519 1.806351 CTCGAGCACAGCTGAGCAG 60.806 63.158 32.94 25.89 39.88 4.24
3288 3520 1.602327 ATCTCGAGCACAGCTGAGCA 61.602 55.000 32.94 15.97 39.88 4.26
3289 3521 0.459934 AATCTCGAGCACAGCTGAGC 60.460 55.000 26.32 26.32 39.88 4.26
3290 3522 1.558741 GAATCTCGAGCACAGCTGAG 58.441 55.000 23.35 14.77 39.88 3.35
3291 3523 0.174389 GGAATCTCGAGCACAGCTGA 59.826 55.000 23.35 0.00 39.88 4.26
3292 3524 0.175302 AGGAATCTCGAGCACAGCTG 59.825 55.000 13.48 13.48 39.88 4.24
3293 3525 0.459489 GAGGAATCTCGAGCACAGCT 59.541 55.000 7.81 0.00 43.88 4.24
3294 3526 0.174389 TGAGGAATCTCGAGCACAGC 59.826 55.000 7.81 0.00 42.79 4.40
3295 3527 1.802136 GCTGAGGAATCTCGAGCACAG 60.802 57.143 7.81 8.99 42.79 3.66
3296 3528 0.174389 GCTGAGGAATCTCGAGCACA 59.826 55.000 7.81 0.00 42.79 4.57
3297 3529 0.459489 AGCTGAGGAATCTCGAGCAC 59.541 55.000 7.81 1.12 41.85 4.40
3298 3530 0.743688 GAGCTGAGGAATCTCGAGCA 59.256 55.000 7.81 0.00 41.85 4.26
3299 3531 3.568093 GAGCTGAGGAATCTCGAGC 57.432 57.895 7.81 0.00 42.79 5.03
3303 3535 6.704512 GATTAAATCGAGCTGAGGAATCTC 57.295 41.667 0.00 0.00 40.36 2.75
3318 3550 4.604043 CGACTCATGCACGACGATTAAATC 60.604 45.833 0.00 0.00 0.00 2.17
3319 3551 3.242944 CGACTCATGCACGACGATTAAAT 59.757 43.478 0.00 0.00 0.00 1.40
3320 3552 2.596862 CGACTCATGCACGACGATTAAA 59.403 45.455 0.00 0.00 0.00 1.52
3321 3553 2.182014 CGACTCATGCACGACGATTAA 58.818 47.619 0.00 0.00 0.00 1.40
3322 3554 1.131693 ACGACTCATGCACGACGATTA 59.868 47.619 0.00 0.00 0.00 1.75
3323 3555 0.109272 ACGACTCATGCACGACGATT 60.109 50.000 0.00 0.00 0.00 3.34
3324 3556 0.109272 AACGACTCATGCACGACGAT 60.109 50.000 0.00 0.00 0.00 3.73
3325 3557 0.728129 GAACGACTCATGCACGACGA 60.728 55.000 0.00 0.00 0.00 4.20
3326 3558 1.001745 TGAACGACTCATGCACGACG 61.002 55.000 11.51 0.00 0.00 5.12
3327 3559 1.136690 TTGAACGACTCATGCACGAC 58.863 50.000 11.51 6.88 32.78 4.34
3328 3560 1.525197 GTTTGAACGACTCATGCACGA 59.475 47.619 11.51 0.00 32.78 4.35
3329 3561 1.526887 AGTTTGAACGACTCATGCACG 59.473 47.619 0.00 0.00 32.78 5.34
3330 3562 3.609103 AAGTTTGAACGACTCATGCAC 57.391 42.857 0.00 0.00 32.78 4.57
3331 3563 3.376859 ACAAAGTTTGAACGACTCATGCA 59.623 39.130 22.23 0.00 32.78 3.96
3332 3564 3.952535 ACAAAGTTTGAACGACTCATGC 58.047 40.909 22.23 0.00 32.78 4.06
3333 3565 4.203828 CGACAAAGTTTGAACGACTCATG 58.796 43.478 22.23 0.00 36.66 3.07
3334 3566 3.869246 ACGACAAAGTTTGAACGACTCAT 59.131 39.130 29.76 15.11 37.54 2.90
3335 3567 3.255725 ACGACAAAGTTTGAACGACTCA 58.744 40.909 29.76 0.00 37.54 3.41
3336 3568 3.302286 GGACGACAAAGTTTGAACGACTC 60.302 47.826 29.76 22.01 37.54 3.36
3337 3569 2.606272 GGACGACAAAGTTTGAACGACT 59.394 45.455 29.76 17.71 37.54 4.18
3338 3570 2.286008 GGGACGACAAAGTTTGAACGAC 60.286 50.000 29.76 25.54 37.54 4.34
3339 3571 1.935199 GGGACGACAAAGTTTGAACGA 59.065 47.619 29.76 0.00 37.54 3.85
3340 3572 1.003223 GGGGACGACAAAGTTTGAACG 60.003 52.381 22.23 24.09 38.79 3.95
3341 3573 2.018515 TGGGGACGACAAAGTTTGAAC 58.981 47.619 22.23 13.49 0.00 3.18
3342 3574 2.421751 TGGGGACGACAAAGTTTGAA 57.578 45.000 22.23 0.00 0.00 2.69
3343 3575 2.649531 ATGGGGACGACAAAGTTTGA 57.350 45.000 22.23 0.00 0.00 2.69
3344 3576 2.161609 GCTATGGGGACGACAAAGTTTG 59.838 50.000 14.13 14.13 0.00 2.93
3345 3577 2.224670 TGCTATGGGGACGACAAAGTTT 60.225 45.455 0.00 0.00 0.00 2.66
3346 3578 1.349688 TGCTATGGGGACGACAAAGTT 59.650 47.619 0.00 0.00 0.00 2.66
3347 3579 0.981183 TGCTATGGGGACGACAAAGT 59.019 50.000 0.00 0.00 0.00 2.66
3348 3580 2.332063 ATGCTATGGGGACGACAAAG 57.668 50.000 0.00 0.00 0.00 2.77
3349 3581 2.364632 CAATGCTATGGGGACGACAAA 58.635 47.619 0.00 0.00 0.00 2.83
3350 3582 2.016604 GCAATGCTATGGGGACGACAA 61.017 52.381 0.00 0.00 0.00 3.18
3351 3583 0.463654 GCAATGCTATGGGGACGACA 60.464 55.000 0.00 0.00 0.00 4.35
3352 3584 0.179045 AGCAATGCTATGGGGACGAC 60.179 55.000 5.69 0.00 36.99 4.34
3353 3585 0.106708 GAGCAATGCTATGGGGACGA 59.893 55.000 8.12 0.00 39.88 4.20
3354 3586 0.107456 AGAGCAATGCTATGGGGACG 59.893 55.000 8.12 0.00 39.88 4.79
3355 3587 2.355010 AAGAGCAATGCTATGGGGAC 57.645 50.000 8.12 0.00 39.88 4.46
3356 3588 2.423373 GGAAAGAGCAATGCTATGGGGA 60.423 50.000 8.12 0.00 39.88 4.81
3357 3589 1.959282 GGAAAGAGCAATGCTATGGGG 59.041 52.381 8.12 0.00 39.88 4.96
3358 3590 2.360165 GTGGAAAGAGCAATGCTATGGG 59.640 50.000 8.12 0.00 39.88 4.00
3359 3591 3.285484 AGTGGAAAGAGCAATGCTATGG 58.715 45.455 8.12 0.00 39.88 2.74
3360 3592 5.121811 AGTAGTGGAAAGAGCAATGCTATG 58.878 41.667 8.12 0.00 39.88 2.23
3361 3593 5.365021 AGTAGTGGAAAGAGCAATGCTAT 57.635 39.130 8.12 0.49 39.88 2.97
3362 3594 4.826274 AGTAGTGGAAAGAGCAATGCTA 57.174 40.909 8.12 0.00 39.88 3.49
3363 3595 3.710209 AGTAGTGGAAAGAGCAATGCT 57.290 42.857 7.79 7.79 43.88 3.79
3364 3596 4.333926 CCTTAGTAGTGGAAAGAGCAATGC 59.666 45.833 0.00 0.00 0.00 3.56
3365 3597 5.734720 TCCTTAGTAGTGGAAAGAGCAATG 58.265 41.667 0.00 0.00 0.00 2.82
3366 3598 6.567602 ATCCTTAGTAGTGGAAAGAGCAAT 57.432 37.500 0.00 0.00 35.81 3.56
3367 3599 5.394224 CGATCCTTAGTAGTGGAAAGAGCAA 60.394 44.000 0.00 0.00 35.81 3.91
3368 3600 4.098044 CGATCCTTAGTAGTGGAAAGAGCA 59.902 45.833 0.00 0.00 35.81 4.26
3369 3601 4.098196 ACGATCCTTAGTAGTGGAAAGAGC 59.902 45.833 0.00 0.00 35.81 4.09
3370 3602 5.838531 ACGATCCTTAGTAGTGGAAAGAG 57.161 43.478 0.00 0.00 35.81 2.85
3371 3603 5.126707 GGAACGATCCTTAGTAGTGGAAAGA 59.873 44.000 4.14 0.00 42.93 2.52
3372 3604 5.105473 TGGAACGATCCTTAGTAGTGGAAAG 60.105 44.000 13.40 0.00 46.70 2.62
3405 3637 9.057089 CAGAATAGAAGTAAAACTGGAGTGTTT 57.943 33.333 0.00 0.00 41.32 2.83
3408 3640 8.608844 AACAGAATAGAAGTAAAACTGGAGTG 57.391 34.615 0.00 0.00 0.00 3.51
3426 3660 3.091545 CCATAGCACCACCAAACAGAAT 58.908 45.455 0.00 0.00 0.00 2.40
3489 3728 9.936759 GGGATATTTTGAACAAAGAAATTGGTA 57.063 29.630 0.46 0.00 39.68 3.25
3497 3736 9.174166 GCTACTTAGGGATATTTTGAACAAAGA 57.826 33.333 0.46 0.00 0.00 2.52
3498 3737 8.406297 GGCTACTTAGGGATATTTTGAACAAAG 58.594 37.037 0.46 0.00 0.00 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.