Multiple sequence alignment - TraesCS6A01G335300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G335300 chr6A 100.000 2372 0 0 1 2372 567626520 567628891 0.000000e+00 4381
1 TraesCS6A01G335300 chr6A 94.246 1964 105 6 2 1962 580783202 580785160 0.000000e+00 2994
2 TraesCS6A01G335300 chr3A 94.954 1962 93 4 2 1962 54533841 54531885 0.000000e+00 3070
3 TraesCS6A01G335300 chr3B 94.255 1932 108 2 2 1931 272589518 272587588 0.000000e+00 2950
4 TraesCS6A01G335300 chr3B 92.548 1087 77 2 845 1931 233223858 233224940 0.000000e+00 1555
5 TraesCS6A01G335300 chr5B 93.689 1933 118 3 1 1931 619685275 619683345 0.000000e+00 2891
6 TraesCS6A01G335300 chr7B 94.671 1520 75 3 412 1931 712762487 712760974 0.000000e+00 2353
7 TraesCS6A01G335300 chr7B 93.552 853 52 3 2 852 613909276 613910127 0.000000e+00 1267
8 TraesCS6A01G335300 chr7B 93.396 848 52 3 2 846 613885548 613886394 0.000000e+00 1253
9 TraesCS6A01G335300 chr7B 92.669 723 48 5 2 722 658643668 658644387 0.000000e+00 1037
10 TraesCS6A01G335300 chr7B 95.111 450 19 1 1923 2372 11481080 11481526 0.000000e+00 706
11 TraesCS6A01G335300 chr2B 90.028 1083 74 15 850 1931 239997705 239996656 0.000000e+00 1371
12 TraesCS6A01G335300 chr2B 96.444 450 16 0 1923 2372 651344309 651343860 0.000000e+00 743
13 TraesCS6A01G335300 chr2B 95.122 451 21 1 1923 2372 760344088 760344538 0.000000e+00 710
14 TraesCS6A01G335300 chr2B 95.814 215 9 0 1717 1931 216856013 216855799 4.850000e-92 348
15 TraesCS6A01G335300 chr6B 94.607 853 44 1 2 852 673196402 673195550 0.000000e+00 1319
16 TraesCS6A01G335300 chr6B 90.247 933 58 7 1024 1931 664805526 664806450 0.000000e+00 1188
17 TraesCS6A01G335300 chr6B 96.222 450 17 0 1923 2372 297695439 297695888 0.000000e+00 737
18 TraesCS6A01G335300 chr6B 94.912 452 20 2 1923 2372 90039870 90040320 0.000000e+00 704
19 TraesCS6A01G335300 chr6B 92.697 178 12 1 845 1022 673195493 673195317 3.030000e-64 255
20 TraesCS6A01G335300 chr1B 94.477 851 43 2 2 848 512228257 512227407 0.000000e+00 1308
21 TraesCS6A01G335300 chr1B 96.667 450 15 0 1923 2372 30519141 30519590 0.000000e+00 749
22 TraesCS6A01G335300 chr1B 96.444 450 16 0 1923 2372 52813705 52813256 0.000000e+00 743
23 TraesCS6A01G335300 chr1B 81.139 509 69 17 1024 1525 646172443 646171955 1.330000e-102 383
24 TraesCS6A01G335300 chr1B 93.820 178 10 1 845 1022 512227346 512227170 1.400000e-67 267
25 TraesCS6A01G335300 chrUn 95.333 450 21 0 1923 2372 312664641 312664192 0.000000e+00 715
26 TraesCS6A01G335300 chrUn 95.111 450 22 0 1923 2372 312657007 312656558 0.000000e+00 710
27 TraesCS6A01G335300 chr1D 82.617 512 41 22 1024 1525 467928491 467928018 2.190000e-110 409
28 TraesCS6A01G335300 chr4A 87.000 100 6 2 1062 1157 84372652 84372748 3.220000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G335300 chr6A 567626520 567628891 2371 False 4381.0 4381 100.0000 1 2372 1 chr6A.!!$F1 2371
1 TraesCS6A01G335300 chr6A 580783202 580785160 1958 False 2994.0 2994 94.2460 2 1962 1 chr6A.!!$F2 1960
2 TraesCS6A01G335300 chr3A 54531885 54533841 1956 True 3070.0 3070 94.9540 2 1962 1 chr3A.!!$R1 1960
3 TraesCS6A01G335300 chr3B 272587588 272589518 1930 True 2950.0 2950 94.2550 2 1931 1 chr3B.!!$R1 1929
4 TraesCS6A01G335300 chr3B 233223858 233224940 1082 False 1555.0 1555 92.5480 845 1931 1 chr3B.!!$F1 1086
5 TraesCS6A01G335300 chr5B 619683345 619685275 1930 True 2891.0 2891 93.6890 1 1931 1 chr5B.!!$R1 1930
6 TraesCS6A01G335300 chr7B 712760974 712762487 1513 True 2353.0 2353 94.6710 412 1931 1 chr7B.!!$R1 1519
7 TraesCS6A01G335300 chr7B 613909276 613910127 851 False 1267.0 1267 93.5520 2 852 1 chr7B.!!$F3 850
8 TraesCS6A01G335300 chr7B 613885548 613886394 846 False 1253.0 1253 93.3960 2 846 1 chr7B.!!$F2 844
9 TraesCS6A01G335300 chr7B 658643668 658644387 719 False 1037.0 1037 92.6690 2 722 1 chr7B.!!$F4 720
10 TraesCS6A01G335300 chr2B 239996656 239997705 1049 True 1371.0 1371 90.0280 850 1931 1 chr2B.!!$R2 1081
11 TraesCS6A01G335300 chr6B 664805526 664806450 924 False 1188.0 1188 90.2470 1024 1931 1 chr6B.!!$F3 907
12 TraesCS6A01G335300 chr6B 673195317 673196402 1085 True 787.0 1319 93.6520 2 1022 2 chr6B.!!$R1 1020
13 TraesCS6A01G335300 chr1B 512227170 512228257 1087 True 787.5 1308 94.1485 2 1022 2 chr1B.!!$R3 1020

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
705 711 0.034283 GTCTCACCCCTCGACCTACT 60.034 60.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1976 2074 0.178995 TGGTGGCATTGAGCTGTTGA 60.179 50.0 0.0 0.0 44.79 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
312 318 2.650813 GATCTCCCCGACGCTGCAAT 62.651 60.000 0.00 0.00 0.00 3.56
601 607 9.436957 AACATCATCAAAGTCTATACTTCGTTT 57.563 29.630 0.00 0.00 45.37 3.60
699 705 2.675423 CACCGTCTCACCCCTCGA 60.675 66.667 0.00 0.00 0.00 4.04
705 711 0.034283 GTCTCACCCCTCGACCTACT 60.034 60.000 0.00 0.00 0.00 2.57
907 978 2.423373 CCCTCTCCTCTCTCCTTCTCTG 60.423 59.091 0.00 0.00 0.00 3.35
969 1040 2.030027 TCCACTGACCCTGTTCATCT 57.970 50.000 0.00 0.00 0.00 2.90
990 1061 1.043673 GGGAAGGAAGGAGCGAGCTA 61.044 60.000 0.00 0.00 0.00 3.32
997 1068 3.151022 GGAGCGAGCTACCAGGCT 61.151 66.667 0.00 0.00 46.11 4.58
1218 1292 1.427809 CAGGCATAGATCAGGTGGGA 58.572 55.000 0.00 0.00 0.00 4.37
1284 1358 0.475828 ACTTTCCCTGCCCCTACTGT 60.476 55.000 0.00 0.00 0.00 3.55
1355 1429 2.743718 CTTCGAGCCCCACACTGT 59.256 61.111 0.00 0.00 0.00 3.55
1381 1455 2.117051 GTCCCGATTAACCTCCTCCTT 58.883 52.381 0.00 0.00 0.00 3.36
1455 1529 0.324943 GTCTTTGAGCAGGTGGCCTA 59.675 55.000 3.32 0.00 46.50 3.93
1459 1533 3.265737 TCTTTGAGCAGGTGGCCTATAAA 59.734 43.478 3.32 0.00 46.50 1.40
1525 1599 0.461961 GACCCAATGAGTCCTCCTCG 59.538 60.000 0.00 0.00 43.64 4.63
1586 1660 6.579666 CCTAGTGTAAATTTGGTTTGCGTAAC 59.420 38.462 0.00 0.00 35.45 2.50
1600 1674 0.038526 CGTAACGCTCTGGTGAGGTT 60.039 55.000 0.00 0.00 40.53 3.50
1627 1701 6.147492 GGCAAATGATTTTAGATGTGCACAAA 59.853 34.615 25.72 13.69 0.00 2.83
1649 1723 3.647590 AGGGTGCAAACTTGGATCAATTT 59.352 39.130 0.00 0.00 30.42 1.82
1819 1917 8.599624 AATTATTCTTGTCAATGTCCCTTGAT 57.400 30.769 0.00 0.00 37.47 2.57
1941 2039 9.862371 GAAGTAGAGTTCTTGTTGATTCATCTA 57.138 33.333 0.00 0.00 0.00 1.98
1962 2060 4.278975 AGCTAGCAACTGAGTAGCTTTT 57.721 40.909 18.83 0.00 45.82 2.27
1963 2061 4.646572 AGCTAGCAACTGAGTAGCTTTTT 58.353 39.130 18.83 0.00 45.82 1.94
1983 2081 5.880054 TTTTGCCTACTTCTATCAACAGC 57.120 39.130 0.00 0.00 0.00 4.40
1984 2082 4.826274 TTGCCTACTTCTATCAACAGCT 57.174 40.909 0.00 0.00 0.00 4.24
1985 2083 4.392921 TGCCTACTTCTATCAACAGCTC 57.607 45.455 0.00 0.00 0.00 4.09
1986 2084 3.769300 TGCCTACTTCTATCAACAGCTCA 59.231 43.478 0.00 0.00 0.00 4.26
1987 2085 4.222810 TGCCTACTTCTATCAACAGCTCAA 59.777 41.667 0.00 0.00 0.00 3.02
1988 2086 5.104776 TGCCTACTTCTATCAACAGCTCAAT 60.105 40.000 0.00 0.00 0.00 2.57
1989 2087 5.236047 GCCTACTTCTATCAACAGCTCAATG 59.764 44.000 0.00 0.00 0.00 2.82
1990 2088 5.236047 CCTACTTCTATCAACAGCTCAATGC 59.764 44.000 0.00 0.00 43.29 3.56
1991 2089 3.944015 ACTTCTATCAACAGCTCAATGCC 59.056 43.478 0.00 0.00 44.23 4.40
1992 2090 3.632643 TCTATCAACAGCTCAATGCCA 57.367 42.857 0.00 0.00 44.23 4.92
1993 2091 3.273434 TCTATCAACAGCTCAATGCCAC 58.727 45.455 0.00 0.00 44.23 5.01
1994 2092 1.180029 ATCAACAGCTCAATGCCACC 58.820 50.000 0.00 0.00 44.23 4.61
1995 2093 0.178995 TCAACAGCTCAATGCCACCA 60.179 50.000 0.00 0.00 44.23 4.17
1996 2094 0.675083 CAACAGCTCAATGCCACCAA 59.325 50.000 0.00 0.00 44.23 3.67
1997 2095 1.068895 CAACAGCTCAATGCCACCAAA 59.931 47.619 0.00 0.00 44.23 3.28
1998 2096 1.636148 ACAGCTCAATGCCACCAAAT 58.364 45.000 0.00 0.00 44.23 2.32
1999 2097 1.274167 ACAGCTCAATGCCACCAAATG 59.726 47.619 0.00 0.00 44.23 2.32
2000 2098 1.274167 CAGCTCAATGCCACCAAATGT 59.726 47.619 0.00 0.00 44.23 2.71
2001 2099 1.972795 AGCTCAATGCCACCAAATGTT 59.027 42.857 0.00 0.00 44.23 2.71
2002 2100 2.369532 AGCTCAATGCCACCAAATGTTT 59.630 40.909 0.00 0.00 44.23 2.83
2003 2101 3.140623 GCTCAATGCCACCAAATGTTTT 58.859 40.909 0.00 0.00 35.15 2.43
2004 2102 3.565063 GCTCAATGCCACCAAATGTTTTT 59.435 39.130 0.00 0.00 35.15 1.94
2028 2126 9.823647 TTTTTGCCATTCTTCTTTGTTATACAA 57.176 25.926 0.00 0.00 36.11 2.41
2029 2127 8.810652 TTTGCCATTCTTCTTTGTTATACAAC 57.189 30.769 0.00 0.00 37.90 3.32
2030 2128 6.607689 TGCCATTCTTCTTTGTTATACAACG 58.392 36.000 0.00 0.00 37.90 4.10
2031 2129 6.205853 TGCCATTCTTCTTTGTTATACAACGT 59.794 34.615 0.00 0.00 37.90 3.99
2032 2130 6.741358 GCCATTCTTCTTTGTTATACAACGTC 59.259 38.462 0.00 0.00 37.90 4.34
2033 2131 7.360946 GCCATTCTTCTTTGTTATACAACGTCT 60.361 37.037 0.00 0.00 37.90 4.18
2034 2132 7.957484 CCATTCTTCTTTGTTATACAACGTCTG 59.043 37.037 0.00 0.00 37.90 3.51
2035 2133 8.495949 CATTCTTCTTTGTTATACAACGTCTGT 58.504 33.333 8.15 8.15 37.90 3.41
2036 2134 8.428186 TTCTTCTTTGTTATACAACGTCTGTT 57.572 30.769 8.33 1.72 37.90 3.16
2037 2135 9.531942 TTCTTCTTTGTTATACAACGTCTGTTA 57.468 29.630 8.33 1.00 37.90 2.41
2038 2136 9.701098 TCTTCTTTGTTATACAACGTCTGTTAT 57.299 29.630 8.33 4.44 37.90 1.89
2041 2139 9.911138 TCTTTGTTATACAACGTCTGTTATACA 57.089 29.630 8.33 7.61 37.90 2.29
2044 2142 9.857957 TTGTTATACAACGTCTGTTATACATCA 57.142 29.630 8.33 0.23 39.64 3.07
2049 2147 7.987268 ACAACGTCTGTTATACATCATACAG 57.013 36.000 0.00 0.00 36.28 2.74
2050 2148 7.544622 ACAACGTCTGTTATACATCATACAGT 58.455 34.615 0.00 0.00 36.28 3.55
2051 2149 7.488150 ACAACGTCTGTTATACATCATACAGTG 59.512 37.037 0.00 0.00 36.28 3.66
2052 2150 7.096884 ACGTCTGTTATACATCATACAGTGT 57.903 36.000 0.00 0.00 0.00 3.55
2053 2151 7.194278 ACGTCTGTTATACATCATACAGTGTC 58.806 38.462 0.00 0.00 0.00 3.67
2054 2152 6.357240 CGTCTGTTATACATCATACAGTGTCG 59.643 42.308 0.00 0.00 0.00 4.35
2055 2153 7.415229 GTCTGTTATACATCATACAGTGTCGA 58.585 38.462 0.00 0.00 0.00 4.20
2056 2154 7.588123 GTCTGTTATACATCATACAGTGTCGAG 59.412 40.741 0.00 0.00 0.00 4.04
2057 2155 6.206498 TGTTATACATCATACAGTGTCGAGC 58.794 40.000 0.00 0.00 0.00 5.03
2058 2156 6.039382 TGTTATACATCATACAGTGTCGAGCT 59.961 38.462 0.00 0.00 0.00 4.09
2059 2157 3.428746 ACATCATACAGTGTCGAGCTC 57.571 47.619 2.73 2.73 0.00 4.09
2060 2158 2.223363 ACATCATACAGTGTCGAGCTCG 60.223 50.000 30.03 30.03 41.45 5.03
2061 2159 0.733150 TCATACAGTGTCGAGCTCGG 59.267 55.000 33.98 20.49 40.29 4.63
2062 2160 0.867753 CATACAGTGTCGAGCTCGGC 60.868 60.000 32.84 32.84 45.40 5.54
2068 2166 2.576317 GTCGAGCTCGGCGTACAC 60.576 66.667 33.98 20.44 40.29 2.90
2069 2167 3.807538 TCGAGCTCGGCGTACACC 61.808 66.667 33.98 0.00 40.29 4.16
2070 2168 4.111016 CGAGCTCGGCGTACACCA 62.111 66.667 28.40 0.00 35.37 4.17
2071 2169 2.260434 GAGCTCGGCGTACACCAA 59.740 61.111 6.85 0.00 0.00 3.67
2072 2170 2.048503 AGCTCGGCGTACACCAAC 60.049 61.111 6.85 0.00 0.00 3.77
2073 2171 3.116531 GCTCGGCGTACACCAACC 61.117 66.667 6.85 0.00 0.00 3.77
2074 2172 2.340809 CTCGGCGTACACCAACCA 59.659 61.111 6.85 0.00 0.00 3.67
2075 2173 1.079405 CTCGGCGTACACCAACCAT 60.079 57.895 6.85 0.00 0.00 3.55
2076 2174 0.672401 CTCGGCGTACACCAACCATT 60.672 55.000 6.85 0.00 0.00 3.16
2077 2175 0.951525 TCGGCGTACACCAACCATTG 60.952 55.000 6.85 0.00 0.00 2.82
2078 2176 1.231958 CGGCGTACACCAACCATTGT 61.232 55.000 0.00 0.00 0.00 2.71
2079 2177 1.810959 GGCGTACACCAACCATTGTA 58.189 50.000 0.00 0.00 0.00 2.41
2080 2178 1.465777 GGCGTACACCAACCATTGTAC 59.534 52.381 0.00 2.43 43.11 2.90
2081 2179 2.144730 GCGTACACCAACCATTGTACA 58.855 47.619 11.34 0.00 45.65 2.90
2082 2180 2.548904 GCGTACACCAACCATTGTACAA 59.451 45.455 11.41 11.41 45.65 2.41
2083 2181 3.003482 GCGTACACCAACCATTGTACAAA 59.997 43.478 13.23 0.00 45.65 2.83
2084 2182 4.529446 CGTACACCAACCATTGTACAAAC 58.471 43.478 13.23 1.12 45.65 2.93
2085 2183 4.035324 CGTACACCAACCATTGTACAAACA 59.965 41.667 13.23 0.00 45.65 2.83
2086 2184 5.278071 CGTACACCAACCATTGTACAAACAT 60.278 40.000 13.23 0.00 45.65 2.71
2087 2185 6.073167 CGTACACCAACCATTGTACAAACATA 60.073 38.462 13.23 0.00 45.65 2.29
2088 2186 6.909550 ACACCAACCATTGTACAAACATAT 57.090 33.333 13.23 0.00 34.97 1.78
2089 2187 7.296628 ACACCAACCATTGTACAAACATATT 57.703 32.000 13.23 0.61 34.97 1.28
2090 2188 8.410673 ACACCAACCATTGTACAAACATATTA 57.589 30.769 13.23 0.00 34.97 0.98
2091 2189 9.030452 ACACCAACCATTGTACAAACATATTAT 57.970 29.630 13.23 0.00 34.97 1.28
2092 2190 9.868277 CACCAACCATTGTACAAACATATTATT 57.132 29.630 13.23 0.00 34.97 1.40
2120 2218 4.705337 ACAGCAAGTACTAGTAGTGCTC 57.295 45.455 27.04 9.61 40.32 4.26
2121 2219 4.337145 ACAGCAAGTACTAGTAGTGCTCT 58.663 43.478 27.04 18.49 40.32 4.09
2122 2220 4.156922 ACAGCAAGTACTAGTAGTGCTCTG 59.843 45.833 27.04 23.78 40.32 3.35
2123 2221 4.396478 CAGCAAGTACTAGTAGTGCTCTGA 59.604 45.833 27.04 0.00 40.32 3.27
2124 2222 5.010933 AGCAAGTACTAGTAGTGCTCTGAA 58.989 41.667 25.32 0.00 40.32 3.02
2125 2223 5.654650 AGCAAGTACTAGTAGTGCTCTGAAT 59.345 40.000 25.32 10.67 40.32 2.57
2126 2224 6.829298 AGCAAGTACTAGTAGTGCTCTGAATA 59.171 38.462 25.32 0.00 40.32 1.75
2127 2225 7.504238 AGCAAGTACTAGTAGTGCTCTGAATAT 59.496 37.037 25.32 9.61 40.32 1.28
2128 2226 8.784994 GCAAGTACTAGTAGTGCTCTGAATATA 58.215 37.037 19.62 0.00 40.32 0.86
2133 2231 8.754991 ACTAGTAGTGCTCTGAATATAAGTGT 57.245 34.615 0.85 0.00 0.00 3.55
2134 2232 9.191479 ACTAGTAGTGCTCTGAATATAAGTGTT 57.809 33.333 0.85 0.00 0.00 3.32
2137 2235 8.138712 AGTAGTGCTCTGAATATAAGTGTTAGC 58.861 37.037 0.00 0.00 0.00 3.09
2138 2236 6.878317 AGTGCTCTGAATATAAGTGTTAGCA 58.122 36.000 0.00 0.00 35.26 3.49
2139 2237 7.504403 AGTGCTCTGAATATAAGTGTTAGCAT 58.496 34.615 0.00 0.00 39.39 3.79
2140 2238 7.440556 AGTGCTCTGAATATAAGTGTTAGCATG 59.559 37.037 0.00 0.00 39.39 4.06
2141 2239 7.225538 GTGCTCTGAATATAAGTGTTAGCATGT 59.774 37.037 0.00 0.00 39.39 3.21
2142 2240 7.225341 TGCTCTGAATATAAGTGTTAGCATGTG 59.775 37.037 0.00 0.00 32.88 3.21
2143 2241 7.225538 GCTCTGAATATAAGTGTTAGCATGTGT 59.774 37.037 0.00 0.00 0.00 3.72
2144 2242 9.750125 CTCTGAATATAAGTGTTAGCATGTGTA 57.250 33.333 0.00 0.00 0.00 2.90
2157 2255 9.743057 TGTTAGCATGTGTAATTAATAAATGGC 57.257 29.630 0.00 0.00 0.00 4.40
2158 2256 9.743057 GTTAGCATGTGTAATTAATAAATGGCA 57.257 29.630 0.00 0.00 0.00 4.92
2159 2257 9.964303 TTAGCATGTGTAATTAATAAATGGCAG 57.036 29.630 0.00 0.00 0.00 4.85
2160 2258 8.236585 AGCATGTGTAATTAATAAATGGCAGA 57.763 30.769 0.00 0.00 0.00 4.26
2161 2259 8.694540 AGCATGTGTAATTAATAAATGGCAGAA 58.305 29.630 0.00 0.00 0.00 3.02
2162 2260 9.311916 GCATGTGTAATTAATAAATGGCAGAAA 57.688 29.630 0.00 0.00 0.00 2.52
2173 2271 8.823220 AATAAATGGCAGAAATAACACCTACT 57.177 30.769 0.00 0.00 0.00 2.57
2174 2272 8.823220 ATAAATGGCAGAAATAACACCTACTT 57.177 30.769 0.00 0.00 0.00 2.24
2175 2273 6.515272 AATGGCAGAAATAACACCTACTTG 57.485 37.500 0.00 0.00 0.00 3.16
2176 2274 4.331968 TGGCAGAAATAACACCTACTTGG 58.668 43.478 0.00 0.00 42.93 3.61
2177 2275 4.042311 TGGCAGAAATAACACCTACTTGGA 59.958 41.667 0.00 0.00 39.71 3.53
2178 2276 5.007682 GGCAGAAATAACACCTACTTGGAA 58.992 41.667 0.00 0.00 39.71 3.53
2179 2277 5.652452 GGCAGAAATAACACCTACTTGGAAT 59.348 40.000 0.00 0.00 39.71 3.01
2180 2278 6.183360 GGCAGAAATAACACCTACTTGGAATC 60.183 42.308 0.00 0.00 39.71 2.52
2181 2279 6.599638 GCAGAAATAACACCTACTTGGAATCT 59.400 38.462 0.00 0.00 39.71 2.40
2182 2280 7.201652 GCAGAAATAACACCTACTTGGAATCTC 60.202 40.741 0.00 0.00 39.71 2.75
2183 2281 7.281100 CAGAAATAACACCTACTTGGAATCTCC 59.719 40.741 0.00 0.00 39.71 3.71
2184 2282 5.632034 ATAACACCTACTTGGAATCTCCC 57.368 43.478 0.00 0.00 39.71 4.30
2185 2283 1.831736 ACACCTACTTGGAATCTCCCG 59.168 52.381 0.00 0.00 39.71 5.14
2186 2284 1.139058 CACCTACTTGGAATCTCCCGG 59.861 57.143 0.00 0.00 39.71 5.73
2187 2285 1.273666 ACCTACTTGGAATCTCCCGGT 60.274 52.381 0.00 0.00 39.71 5.28
2188 2286 1.413077 CCTACTTGGAATCTCCCGGTC 59.587 57.143 0.00 0.00 35.03 4.79
2189 2287 1.413077 CTACTTGGAATCTCCCGGTCC 59.587 57.143 0.00 0.00 35.03 4.46
2190 2288 1.272554 ACTTGGAATCTCCCGGTCCC 61.273 60.000 0.00 0.00 35.03 4.46
2191 2289 2.311688 CTTGGAATCTCCCGGTCCCG 62.312 65.000 0.00 0.00 35.03 5.14
2205 2303 4.578898 CCCGGCGCGTACTGCATA 62.579 66.667 8.43 0.00 46.97 3.14
2206 2304 3.327754 CCGGCGCGTACTGCATAC 61.328 66.667 8.43 0.00 46.97 2.39
2207 2305 2.278596 CGGCGCGTACTGCATACT 60.279 61.111 8.43 0.00 46.97 2.12
2208 2306 2.576893 CGGCGCGTACTGCATACTG 61.577 63.158 8.43 0.00 46.97 2.74
2209 2307 1.226859 GGCGCGTACTGCATACTGA 60.227 57.895 8.43 0.00 46.97 3.41
2210 2308 0.804544 GGCGCGTACTGCATACTGAA 60.805 55.000 8.43 0.00 46.97 3.02
2211 2309 0.996462 GCGCGTACTGCATACTGAAA 59.004 50.000 8.43 0.00 46.97 2.69
2212 2310 1.005975 GCGCGTACTGCATACTGAAAG 60.006 52.381 8.43 0.00 46.97 2.62
2216 2314 5.376947 GCGTACTGCATACTGAAAGTTAG 57.623 43.478 5.07 0.00 46.01 2.34
2217 2315 4.267928 GCGTACTGCATACTGAAAGTTAGG 59.732 45.833 5.07 0.00 46.01 2.69
2218 2316 5.906097 GCGTACTGCATACTGAAAGTTAGGA 60.906 44.000 5.07 0.00 46.01 2.94
2219 2317 7.337333 GCGTACTGCATACTGAAAGTTAGGAA 61.337 42.308 5.07 0.00 46.01 3.36
2220 2318 9.243551 GCGTACTGCATACTGAAAGTTAGGAAC 62.244 44.444 5.07 0.00 46.01 3.62
2227 2325 4.100279 CTGAAAGTTAGGAACCCCAACT 57.900 45.455 0.00 0.00 36.23 3.16
2228 2326 3.821033 CTGAAAGTTAGGAACCCCAACTG 59.179 47.826 8.52 0.00 35.48 3.16
2229 2327 3.460340 TGAAAGTTAGGAACCCCAACTGA 59.540 43.478 8.52 0.00 35.48 3.41
2230 2328 4.105697 TGAAAGTTAGGAACCCCAACTGAT 59.894 41.667 8.52 3.23 35.48 2.90
2231 2329 4.741928 AAGTTAGGAACCCCAACTGATT 57.258 40.909 8.52 0.00 35.48 2.57
2232 2330 4.741928 AGTTAGGAACCCCAACTGATTT 57.258 40.909 7.38 0.00 34.65 2.17
2233 2331 4.407365 AGTTAGGAACCCCAACTGATTTG 58.593 43.478 7.38 0.00 34.65 2.32
2234 2332 4.141018 AGTTAGGAACCCCAACTGATTTGT 60.141 41.667 7.38 0.00 34.65 2.83
2235 2333 3.328535 AGGAACCCCAACTGATTTGTT 57.671 42.857 0.00 0.00 32.71 2.83
2236 2334 3.230976 AGGAACCCCAACTGATTTGTTC 58.769 45.455 0.00 0.00 32.71 3.18
2237 2335 3.117131 AGGAACCCCAACTGATTTGTTCT 60.117 43.478 0.00 0.00 32.71 3.01
2238 2336 3.255888 GGAACCCCAACTGATTTGTTCTC 59.744 47.826 0.00 0.00 32.71 2.87
2239 2337 3.593442 ACCCCAACTGATTTGTTCTCA 57.407 42.857 0.00 0.00 32.71 3.27
2240 2338 3.909732 ACCCCAACTGATTTGTTCTCAA 58.090 40.909 0.00 0.00 32.71 3.02
2241 2339 4.482990 ACCCCAACTGATTTGTTCTCAAT 58.517 39.130 0.00 0.00 32.71 2.57
2242 2340 4.524328 ACCCCAACTGATTTGTTCTCAATC 59.476 41.667 0.00 0.00 32.71 2.67
2243 2341 4.768968 CCCCAACTGATTTGTTCTCAATCT 59.231 41.667 0.00 0.00 32.71 2.40
2244 2342 5.945784 CCCCAACTGATTTGTTCTCAATCTA 59.054 40.000 0.00 0.00 32.71 1.98
2245 2343 6.434028 CCCCAACTGATTTGTTCTCAATCTAA 59.566 38.462 0.00 0.00 32.71 2.10
2246 2344 7.123247 CCCCAACTGATTTGTTCTCAATCTAAT 59.877 37.037 0.00 0.00 32.71 1.73
2247 2345 8.526147 CCCAACTGATTTGTTCTCAATCTAATT 58.474 33.333 0.00 0.00 32.71 1.40
2248 2346 9.350357 CCAACTGATTTGTTCTCAATCTAATTG 57.650 33.333 0.00 0.00 36.17 2.32
2249 2347 8.857216 CAACTGATTTGTTCTCAATCTAATTGC 58.143 33.333 0.00 0.00 40.05 3.56
2250 2348 8.345724 ACTGATTTGTTCTCAATCTAATTGCT 57.654 30.769 0.00 0.00 40.05 3.91
2251 2349 8.800332 ACTGATTTGTTCTCAATCTAATTGCTT 58.200 29.630 0.00 0.00 40.05 3.91
2252 2350 8.975410 TGATTTGTTCTCAATCTAATTGCTTG 57.025 30.769 0.00 0.00 40.05 4.01
2253 2351 7.543172 TGATTTGTTCTCAATCTAATTGCTTGC 59.457 33.333 0.00 0.00 40.05 4.01
2254 2352 6.579666 TTGTTCTCAATCTAATTGCTTGCT 57.420 33.333 0.00 0.00 40.05 3.91
2255 2353 5.946298 TGTTCTCAATCTAATTGCTTGCTG 58.054 37.500 0.00 0.00 40.05 4.41
2256 2354 5.106038 TGTTCTCAATCTAATTGCTTGCTGG 60.106 40.000 0.00 0.00 40.05 4.85
2257 2355 4.592942 TCTCAATCTAATTGCTTGCTGGT 58.407 39.130 0.00 0.00 40.05 4.00
2258 2356 5.012239 TCTCAATCTAATTGCTTGCTGGTT 58.988 37.500 0.00 0.00 40.05 3.67
2259 2357 6.179756 TCTCAATCTAATTGCTTGCTGGTTA 58.820 36.000 0.00 0.00 40.05 2.85
2260 2358 6.094048 TCTCAATCTAATTGCTTGCTGGTTAC 59.906 38.462 0.00 0.00 40.05 2.50
2261 2359 5.945784 TCAATCTAATTGCTTGCTGGTTACT 59.054 36.000 0.00 0.00 40.05 2.24
2262 2360 6.094048 TCAATCTAATTGCTTGCTGGTTACTC 59.906 38.462 0.00 0.00 40.05 2.59
2263 2361 4.905429 TCTAATTGCTTGCTGGTTACTCA 58.095 39.130 0.00 0.00 0.00 3.41
2264 2362 4.937620 TCTAATTGCTTGCTGGTTACTCAG 59.062 41.667 0.00 0.00 37.79 3.35
2265 2363 2.638480 TTGCTTGCTGGTTACTCAGT 57.362 45.000 0.00 0.00 37.12 3.41
2266 2364 2.638480 TGCTTGCTGGTTACTCAGTT 57.362 45.000 0.00 0.00 37.12 3.16
2267 2365 2.930950 TGCTTGCTGGTTACTCAGTTT 58.069 42.857 0.00 0.00 37.12 2.66
2268 2366 3.287222 TGCTTGCTGGTTACTCAGTTTT 58.713 40.909 0.00 0.00 37.12 2.43
2269 2367 3.699038 TGCTTGCTGGTTACTCAGTTTTT 59.301 39.130 0.00 0.00 37.12 1.94
2270 2368 4.884744 TGCTTGCTGGTTACTCAGTTTTTA 59.115 37.500 0.00 0.00 37.12 1.52
2271 2369 5.534654 TGCTTGCTGGTTACTCAGTTTTTAT 59.465 36.000 0.00 0.00 37.12 1.40
2272 2370 6.712998 TGCTTGCTGGTTACTCAGTTTTTATA 59.287 34.615 0.00 0.00 37.12 0.98
2273 2371 7.393234 TGCTTGCTGGTTACTCAGTTTTTATAT 59.607 33.333 0.00 0.00 37.12 0.86
2274 2372 7.910683 GCTTGCTGGTTACTCAGTTTTTATATC 59.089 37.037 0.00 0.00 37.12 1.63
2275 2373 9.167311 CTTGCTGGTTACTCAGTTTTTATATCT 57.833 33.333 0.00 0.00 37.12 1.98
2276 2374 8.492673 TGCTGGTTACTCAGTTTTTATATCTG 57.507 34.615 0.00 0.00 37.12 2.90
2277 2375 7.552687 TGCTGGTTACTCAGTTTTTATATCTGG 59.447 37.037 0.00 0.00 37.12 3.86
2278 2376 7.769044 GCTGGTTACTCAGTTTTTATATCTGGA 59.231 37.037 0.00 0.00 37.12 3.86
2279 2377 9.099454 CTGGTTACTCAGTTTTTATATCTGGAC 57.901 37.037 0.00 0.00 0.00 4.02
2280 2378 8.598916 TGGTTACTCAGTTTTTATATCTGGACA 58.401 33.333 0.00 0.00 0.00 4.02
2281 2379 9.099454 GGTTACTCAGTTTTTATATCTGGACAG 57.901 37.037 0.00 0.00 0.00 3.51
2282 2380 9.654663 GTTACTCAGTTTTTATATCTGGACAGT 57.345 33.333 0.00 0.00 0.00 3.55
2283 2381 9.653287 TTACTCAGTTTTTATATCTGGACAGTG 57.347 33.333 0.00 0.00 0.00 3.66
2284 2382 7.680730 ACTCAGTTTTTATATCTGGACAGTGT 58.319 34.615 0.00 0.00 0.00 3.55
2285 2383 8.157476 ACTCAGTTTTTATATCTGGACAGTGTT 58.843 33.333 0.00 0.00 0.00 3.32
2286 2384 8.322906 TCAGTTTTTATATCTGGACAGTGTTG 57.677 34.615 0.00 0.00 0.00 3.33
2287 2385 7.936847 TCAGTTTTTATATCTGGACAGTGTTGT 59.063 33.333 0.00 0.00 41.18 3.32
2288 2386 9.214957 CAGTTTTTATATCTGGACAGTGTTGTA 57.785 33.333 0.00 0.00 37.76 2.41
2289 2387 9.787435 AGTTTTTATATCTGGACAGTGTTGTAA 57.213 29.630 0.00 0.00 37.76 2.41
2294 2392 9.811995 TTATATCTGGACAGTGTTGTAATACAC 57.188 33.333 0.00 0.00 46.86 2.90
2315 2413 5.917462 CACTATTGTGTCCCTATGATGTGA 58.083 41.667 0.00 0.00 39.24 3.58
2316 2414 6.348498 CACTATTGTGTCCCTATGATGTGAA 58.652 40.000 0.00 0.00 39.24 3.18
2317 2415 6.823182 CACTATTGTGTCCCTATGATGTGAAA 59.177 38.462 0.00 0.00 39.24 2.69
2318 2416 7.011763 CACTATTGTGTCCCTATGATGTGAAAG 59.988 40.741 0.00 0.00 39.24 2.62
2319 2417 4.908601 TGTGTCCCTATGATGTGAAAGT 57.091 40.909 0.00 0.00 0.00 2.66
2320 2418 5.241403 TGTGTCCCTATGATGTGAAAGTT 57.759 39.130 0.00 0.00 0.00 2.66
2321 2419 6.367374 TGTGTCCCTATGATGTGAAAGTTA 57.633 37.500 0.00 0.00 0.00 2.24
2322 2420 6.957631 TGTGTCCCTATGATGTGAAAGTTAT 58.042 36.000 0.00 0.00 0.00 1.89
2323 2421 6.823182 TGTGTCCCTATGATGTGAAAGTTATG 59.177 38.462 0.00 0.00 0.00 1.90
2324 2422 6.260936 GTGTCCCTATGATGTGAAAGTTATGG 59.739 42.308 0.00 0.00 0.00 2.74
2325 2423 6.069673 TGTCCCTATGATGTGAAAGTTATGGT 60.070 38.462 0.00 0.00 0.00 3.55
2326 2424 6.483640 GTCCCTATGATGTGAAAGTTATGGTC 59.516 42.308 0.00 0.00 0.00 4.02
2327 2425 6.386927 TCCCTATGATGTGAAAGTTATGGTCT 59.613 38.462 0.00 0.00 0.00 3.85
2328 2426 6.484643 CCCTATGATGTGAAAGTTATGGTCTG 59.515 42.308 0.00 0.00 0.00 3.51
2329 2427 7.275183 CCTATGATGTGAAAGTTATGGTCTGA 58.725 38.462 0.00 0.00 0.00 3.27
2330 2428 7.770433 CCTATGATGTGAAAGTTATGGTCTGAA 59.230 37.037 0.00 0.00 0.00 3.02
2331 2429 9.334947 CTATGATGTGAAAGTTATGGTCTGAAT 57.665 33.333 0.00 0.00 0.00 2.57
2333 2431 8.722480 TGATGTGAAAGTTATGGTCTGAATAG 57.278 34.615 0.00 0.00 0.00 1.73
2334 2432 6.985188 TGTGAAAGTTATGGTCTGAATAGC 57.015 37.500 0.00 0.00 0.00 2.97
2335 2433 6.711277 TGTGAAAGTTATGGTCTGAATAGCT 58.289 36.000 0.00 0.00 0.00 3.32
2336 2434 7.168219 TGTGAAAGTTATGGTCTGAATAGCTT 58.832 34.615 0.00 0.00 33.90 3.74
2337 2435 7.665559 TGTGAAAGTTATGGTCTGAATAGCTTT 59.334 33.333 9.53 9.53 41.12 3.51
2338 2436 9.162764 GTGAAAGTTATGGTCTGAATAGCTTTA 57.837 33.333 9.67 0.00 39.59 1.85
2339 2437 9.905713 TGAAAGTTATGGTCTGAATAGCTTTAT 57.094 29.630 9.67 0.00 39.59 1.40
2357 2455 7.972301 AGCTTTATATTAGGATCTGCTTGAGT 58.028 34.615 0.00 0.00 0.00 3.41
2358 2456 8.093927 AGCTTTATATTAGGATCTGCTTGAGTC 58.906 37.037 0.00 0.00 0.00 3.36
2359 2457 8.093927 GCTTTATATTAGGATCTGCTTGAGTCT 58.906 37.037 0.00 0.00 0.00 3.24
2360 2458 9.638239 CTTTATATTAGGATCTGCTTGAGTCTC 57.362 37.037 0.00 0.00 0.00 3.36
2361 2459 8.948401 TTATATTAGGATCTGCTTGAGTCTCT 57.052 34.615 0.65 0.00 0.00 3.10
2364 2462 6.647334 TTAGGATCTGCTTGAGTCTCTATG 57.353 41.667 0.65 0.00 0.00 2.23
2365 2463 4.802307 AGGATCTGCTTGAGTCTCTATGA 58.198 43.478 0.65 0.00 0.00 2.15
2366 2464 5.396485 AGGATCTGCTTGAGTCTCTATGAT 58.604 41.667 0.65 0.00 0.00 2.45
2367 2465 5.244402 AGGATCTGCTTGAGTCTCTATGATG 59.756 44.000 0.65 0.00 0.00 3.07
2368 2466 5.010922 GGATCTGCTTGAGTCTCTATGATGT 59.989 44.000 0.65 0.00 0.00 3.06
2369 2467 5.929058 TCTGCTTGAGTCTCTATGATGTT 57.071 39.130 0.65 0.00 0.00 2.71
2370 2468 5.900425 TCTGCTTGAGTCTCTATGATGTTC 58.100 41.667 0.65 0.00 0.00 3.18
2371 2469 5.655974 TCTGCTTGAGTCTCTATGATGTTCT 59.344 40.000 0.65 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 5.893824 ACCTCTGGTGAAAAAGACAAATTCT 59.106 36.000 0.00 0.00 32.98 2.40
199 205 9.357161 CTCATAAGTAGTAGTATTGTTCCCTCT 57.643 37.037 0.00 0.00 0.00 3.69
312 318 3.371097 GACGCCCGATGAAGCTCCA 62.371 63.158 0.00 0.00 0.00 3.86
601 607 4.398988 GTGACATGCCAATAGACCAATCAA 59.601 41.667 0.00 0.00 0.00 2.57
686 692 0.034283 AGTAGGTCGAGGGGTGAGAC 60.034 60.000 0.00 0.00 0.00 3.36
699 705 2.663196 GTTGGGCTGCGAGTAGGT 59.337 61.111 0.00 0.00 0.00 3.08
878 949 3.629796 GGAGAGAGGAGAGGGAGTTCATT 60.630 52.174 0.00 0.00 0.00 2.57
907 978 1.365633 CTGCTCGATCTGGGTAGGC 59.634 63.158 0.00 0.00 0.00 3.93
969 1040 1.983224 CTCGCTCCTTCCTTCCCAA 59.017 57.895 0.00 0.00 0.00 4.12
997 1068 2.747460 GCAAGGAGCACGCATCCA 60.747 61.111 9.28 0.00 44.79 3.41
1205 1278 2.039418 CGTCCATTCCCACCTGATCTA 58.961 52.381 0.00 0.00 0.00 1.98
1218 1292 0.107508 CCATGTCCAGCTCGTCCATT 60.108 55.000 0.00 0.00 0.00 3.16
1270 1344 0.974010 TCGTAACAGTAGGGGCAGGG 60.974 60.000 0.00 0.00 0.00 4.45
1284 1358 0.448990 CGATGTCGTGGTCCTCGTAA 59.551 55.000 12.76 3.63 34.11 3.18
1355 1429 1.829222 GAGGTTAATCGGGACTGACCA 59.171 52.381 0.00 0.00 41.20 4.02
1381 1455 0.325110 CAAGCAGGAGGAGGAGGAGA 60.325 60.000 0.00 0.00 0.00 3.71
1436 1510 0.324943 TAGGCCACCTGCTCAAAGAC 59.675 55.000 5.01 0.00 40.92 3.01
1446 1520 6.327386 TCTCATTCTTTTTATAGGCCACCT 57.673 37.500 5.01 0.00 37.71 4.00
1455 1529 6.488715 ACAAGAGGGCTCTCATTCTTTTTAT 58.511 36.000 17.82 0.00 42.34 1.40
1459 1533 4.202503 TGAACAAGAGGGCTCTCATTCTTT 60.203 41.667 17.82 0.00 42.34 2.52
1586 1660 2.328099 GCCAAACCTCACCAGAGCG 61.328 63.158 0.00 0.00 40.68 5.03
1600 1674 5.638657 GTGCACATCTAAAATCATTTGCCAA 59.361 36.000 13.17 0.00 0.00 4.52
1627 1701 2.380064 TTGATCCAAGTTTGCACCCT 57.620 45.000 0.00 0.00 0.00 4.34
1649 1723 1.003118 ACATGCCCAAGCTCTAAACGA 59.997 47.619 0.00 0.00 40.80 3.85
1819 1917 3.170362 CTCTTCCCAGGTGCCCAA 58.830 61.111 0.00 0.00 0.00 4.12
1838 1936 4.464008 TGCACAGAACTGGAGAAAGAAAT 58.536 39.130 6.76 0.00 34.19 2.17
1941 2039 3.971245 AAAGCTACTCAGTTGCTAGCT 57.029 42.857 14.47 3.93 42.96 3.32
1962 2060 5.165961 AGCTGTTGATAGAAGTAGGCAAA 57.834 39.130 0.00 0.00 0.00 3.68
1963 2061 4.222810 TGAGCTGTTGATAGAAGTAGGCAA 59.777 41.667 0.00 0.00 0.00 4.52
1964 2062 3.769300 TGAGCTGTTGATAGAAGTAGGCA 59.231 43.478 0.00 0.00 0.00 4.75
1965 2063 4.392921 TGAGCTGTTGATAGAAGTAGGC 57.607 45.455 0.00 0.00 0.00 3.93
1966 2064 5.236047 GCATTGAGCTGTTGATAGAAGTAGG 59.764 44.000 0.00 0.00 41.15 3.18
1967 2065 5.236047 GGCATTGAGCTGTTGATAGAAGTAG 59.764 44.000 0.00 0.00 44.79 2.57
1968 2066 5.118990 GGCATTGAGCTGTTGATAGAAGTA 58.881 41.667 0.00 0.00 44.79 2.24
1969 2067 3.944015 GGCATTGAGCTGTTGATAGAAGT 59.056 43.478 0.00 0.00 44.79 3.01
1970 2068 3.943381 TGGCATTGAGCTGTTGATAGAAG 59.057 43.478 0.00 0.00 44.79 2.85
1971 2069 3.691118 GTGGCATTGAGCTGTTGATAGAA 59.309 43.478 0.00 0.00 44.79 2.10
1972 2070 3.273434 GTGGCATTGAGCTGTTGATAGA 58.727 45.455 0.00 0.00 44.79 1.98
1973 2071 2.357009 GGTGGCATTGAGCTGTTGATAG 59.643 50.000 0.00 0.00 44.79 2.08
1974 2072 2.290832 TGGTGGCATTGAGCTGTTGATA 60.291 45.455 0.00 0.00 44.79 2.15
1975 2073 1.180029 GGTGGCATTGAGCTGTTGAT 58.820 50.000 0.00 0.00 44.79 2.57
1976 2074 0.178995 TGGTGGCATTGAGCTGTTGA 60.179 50.000 0.00 0.00 44.79 3.18
1977 2075 0.675083 TTGGTGGCATTGAGCTGTTG 59.325 50.000 0.00 0.00 44.79 3.33
1978 2076 1.412079 TTTGGTGGCATTGAGCTGTT 58.588 45.000 0.00 0.00 44.79 3.16
1979 2077 1.274167 CATTTGGTGGCATTGAGCTGT 59.726 47.619 0.00 0.00 44.79 4.40
1980 2078 1.274167 ACATTTGGTGGCATTGAGCTG 59.726 47.619 0.00 0.00 44.79 4.24
1981 2079 1.636148 ACATTTGGTGGCATTGAGCT 58.364 45.000 0.00 0.00 44.79 4.09
1982 2080 2.460757 AACATTTGGTGGCATTGAGC 57.539 45.000 0.00 0.00 44.65 4.26
2002 2100 9.823647 TTGTATAACAAAGAAGAATGGCAAAAA 57.176 25.926 0.00 0.00 34.76 1.94
2003 2101 9.255304 GTTGTATAACAAAGAAGAATGGCAAAA 57.745 29.630 0.00 0.00 40.15 2.44
2004 2102 7.593273 CGTTGTATAACAAAGAAGAATGGCAAA 59.407 33.333 3.13 0.00 40.15 3.68
2005 2103 7.081349 CGTTGTATAACAAAGAAGAATGGCAA 58.919 34.615 3.13 0.00 40.15 4.52
2006 2104 6.205853 ACGTTGTATAACAAAGAAGAATGGCA 59.794 34.615 11.72 0.00 40.15 4.92
2007 2105 6.608610 ACGTTGTATAACAAAGAAGAATGGC 58.391 36.000 11.72 0.00 40.15 4.40
2008 2106 7.957484 CAGACGTTGTATAACAAAGAAGAATGG 59.043 37.037 11.72 0.00 40.15 3.16
2009 2107 8.495949 ACAGACGTTGTATAACAAAGAAGAATG 58.504 33.333 11.72 6.05 40.15 2.67
2010 2108 8.603242 ACAGACGTTGTATAACAAAGAAGAAT 57.397 30.769 11.72 0.00 40.15 2.40
2011 2109 8.428186 AACAGACGTTGTATAACAAAGAAGAA 57.572 30.769 11.72 0.00 40.15 2.52
2012 2110 9.701098 ATAACAGACGTTGTATAACAAAGAAGA 57.299 29.630 11.72 0.00 40.15 2.87
2015 2113 9.911138 TGTATAACAGACGTTGTATAACAAAGA 57.089 29.630 11.72 0.00 40.15 2.52
2018 2116 9.857957 TGATGTATAACAGACGTTGTATAACAA 57.142 29.630 3.13 0.00 39.73 2.83
2023 2121 9.678941 CTGTATGATGTATAACAGACGTTGTAT 57.321 33.333 0.00 0.00 39.73 2.29
2024 2122 8.680001 ACTGTATGATGTATAACAGACGTTGTA 58.320 33.333 8.21 0.00 39.73 2.41
2025 2123 7.488150 CACTGTATGATGTATAACAGACGTTGT 59.512 37.037 8.21 0.00 43.45 3.32
2026 2124 7.488150 ACACTGTATGATGTATAACAGACGTTG 59.512 37.037 8.21 0.00 36.52 4.10
2027 2125 7.544622 ACACTGTATGATGTATAACAGACGTT 58.455 34.615 8.21 0.00 39.24 3.99
2028 2126 7.096884 ACACTGTATGATGTATAACAGACGT 57.903 36.000 8.21 0.00 31.98 4.34
2029 2127 6.357240 CGACACTGTATGATGTATAACAGACG 59.643 42.308 8.21 6.99 31.98 4.18
2030 2128 7.415229 TCGACACTGTATGATGTATAACAGAC 58.585 38.462 8.21 1.62 31.04 3.51
2031 2129 7.562454 TCGACACTGTATGATGTATAACAGA 57.438 36.000 8.21 0.00 31.04 3.41
2032 2130 6.360947 GCTCGACACTGTATGATGTATAACAG 59.639 42.308 0.00 0.00 31.94 3.16
2033 2131 6.039382 AGCTCGACACTGTATGATGTATAACA 59.961 38.462 0.00 0.00 0.00 2.41
2034 2132 6.439599 AGCTCGACACTGTATGATGTATAAC 58.560 40.000 0.00 0.00 0.00 1.89
2035 2133 6.565999 CGAGCTCGACACTGTATGATGTATAA 60.566 42.308 32.06 0.00 43.02 0.98
2036 2134 5.107065 CGAGCTCGACACTGTATGATGTATA 60.107 44.000 32.06 0.00 43.02 1.47
2037 2135 4.319839 CGAGCTCGACACTGTATGATGTAT 60.320 45.833 32.06 0.00 43.02 2.29
2038 2136 3.002348 CGAGCTCGACACTGTATGATGTA 59.998 47.826 32.06 0.00 43.02 2.29
2039 2137 2.223363 CGAGCTCGACACTGTATGATGT 60.223 50.000 32.06 0.00 43.02 3.06
2040 2138 2.379732 CGAGCTCGACACTGTATGATG 58.620 52.381 32.06 0.00 43.02 3.07
2041 2139 1.335182 CCGAGCTCGACACTGTATGAT 59.665 52.381 36.59 0.00 43.02 2.45
2042 2140 0.733150 CCGAGCTCGACACTGTATGA 59.267 55.000 36.59 0.00 43.02 2.15
2043 2141 0.867753 GCCGAGCTCGACACTGTATG 60.868 60.000 36.59 17.36 43.02 2.39
2044 2142 1.433879 GCCGAGCTCGACACTGTAT 59.566 57.895 36.59 0.00 43.02 2.29
2045 2143 2.875485 GCCGAGCTCGACACTGTA 59.125 61.111 36.59 0.00 43.02 2.74
2046 2144 4.406173 CGCCGAGCTCGACACTGT 62.406 66.667 36.59 0.00 43.02 3.55
2047 2145 3.035576 TACGCCGAGCTCGACACTG 62.036 63.158 36.59 20.31 43.02 3.66
2048 2146 2.745100 TACGCCGAGCTCGACACT 60.745 61.111 36.59 15.73 43.02 3.55
2049 2147 2.576317 GTACGCCGAGCTCGACAC 60.576 66.667 36.59 22.97 43.02 3.67
2050 2148 3.051479 TGTACGCCGAGCTCGACA 61.051 61.111 36.59 27.77 43.02 4.35
2051 2149 2.576317 GTGTACGCCGAGCTCGAC 60.576 66.667 36.59 25.48 43.02 4.20
2052 2150 3.807538 GGTGTACGCCGAGCTCGA 61.808 66.667 36.59 14.79 43.02 4.04
2053 2151 3.620300 TTGGTGTACGCCGAGCTCG 62.620 63.158 29.06 29.06 39.44 5.03
2054 2152 2.092882 GTTGGTGTACGCCGAGCTC 61.093 63.158 20.23 2.73 0.00 4.09
2055 2153 2.048503 GTTGGTGTACGCCGAGCT 60.049 61.111 20.23 0.00 0.00 4.09
2056 2154 3.116531 GGTTGGTGTACGCCGAGC 61.117 66.667 25.09 25.09 33.81 5.03
2057 2155 0.672401 AATGGTTGGTGTACGCCGAG 60.672 55.000 20.23 0.00 0.00 4.63
2058 2156 0.951525 CAATGGTTGGTGTACGCCGA 60.952 55.000 20.23 16.16 0.00 5.54
2059 2157 1.231958 ACAATGGTTGGTGTACGCCG 61.232 55.000 20.23 6.83 34.12 6.46
2060 2158 1.465777 GTACAATGGTTGGTGTACGCC 59.534 52.381 18.93 18.93 40.37 5.68
2061 2159 2.886587 GTACAATGGTTGGTGTACGC 57.113 50.000 0.00 0.00 40.37 4.42
2063 2161 5.502153 TGTTTGTACAATGGTTGGTGTAC 57.498 39.130 9.56 6.95 46.73 2.90
2064 2162 8.410673 AATATGTTTGTACAATGGTTGGTGTA 57.589 30.769 9.56 0.00 37.91 2.90
2065 2163 6.909550 ATATGTTTGTACAATGGTTGGTGT 57.090 33.333 9.56 0.00 37.91 4.16
2066 2164 9.868277 AATAATATGTTTGTACAATGGTTGGTG 57.132 29.630 9.56 0.00 37.91 4.17
2098 2196 5.354513 CAGAGCACTACTAGTACTTGCTGTA 59.645 44.000 27.70 9.66 43.53 2.74
2099 2197 4.156922 CAGAGCACTACTAGTACTTGCTGT 59.843 45.833 27.70 23.27 43.53 4.40
2100 2198 4.396478 TCAGAGCACTACTAGTACTTGCTG 59.604 45.833 27.70 19.17 43.53 4.41
2101 2199 4.590918 TCAGAGCACTACTAGTACTTGCT 58.409 43.478 24.79 24.79 46.12 3.91
2102 2200 4.966965 TCAGAGCACTACTAGTACTTGC 57.033 45.455 18.35 18.35 0.00 4.01
2107 2205 9.848710 ACACTTATATTCAGAGCACTACTAGTA 57.151 33.333 1.89 1.89 0.00 1.82
2108 2206 8.754991 ACACTTATATTCAGAGCACTACTAGT 57.245 34.615 0.00 0.00 0.00 2.57
2111 2209 8.138712 GCTAACACTTATATTCAGAGCACTACT 58.861 37.037 0.00 0.00 0.00 2.57
2112 2210 7.921214 TGCTAACACTTATATTCAGAGCACTAC 59.079 37.037 0.00 0.00 32.75 2.73
2113 2211 8.007405 TGCTAACACTTATATTCAGAGCACTA 57.993 34.615 0.00 0.00 32.75 2.74
2114 2212 6.878317 TGCTAACACTTATATTCAGAGCACT 58.122 36.000 0.00 0.00 32.75 4.40
2115 2213 7.225538 ACATGCTAACACTTATATTCAGAGCAC 59.774 37.037 0.00 0.00 39.96 4.40
2116 2214 7.225341 CACATGCTAACACTTATATTCAGAGCA 59.775 37.037 0.00 0.00 41.26 4.26
2117 2215 7.225538 ACACATGCTAACACTTATATTCAGAGC 59.774 37.037 0.00 0.00 0.00 4.09
2118 2216 8.654230 ACACATGCTAACACTTATATTCAGAG 57.346 34.615 0.00 0.00 0.00 3.35
2131 2229 9.743057 GCCATTTATTAATTACACATGCTAACA 57.257 29.630 0.00 0.00 0.00 2.41
2132 2230 9.743057 TGCCATTTATTAATTACACATGCTAAC 57.257 29.630 0.00 0.00 0.00 2.34
2133 2231 9.964303 CTGCCATTTATTAATTACACATGCTAA 57.036 29.630 0.00 0.00 0.00 3.09
2134 2232 9.348476 TCTGCCATTTATTAATTACACATGCTA 57.652 29.630 0.00 0.00 0.00 3.49
2135 2233 8.236585 TCTGCCATTTATTAATTACACATGCT 57.763 30.769 0.00 0.00 0.00 3.79
2136 2234 8.870160 TTCTGCCATTTATTAATTACACATGC 57.130 30.769 0.00 0.00 0.00 4.06
2147 2245 9.914834 AGTAGGTGTTATTTCTGCCATTTATTA 57.085 29.630 0.00 0.00 0.00 0.98
2148 2246 8.823220 AGTAGGTGTTATTTCTGCCATTTATT 57.177 30.769 0.00 0.00 0.00 1.40
2149 2247 8.686334 CAAGTAGGTGTTATTTCTGCCATTTAT 58.314 33.333 0.00 0.00 0.00 1.40
2150 2248 7.122055 CCAAGTAGGTGTTATTTCTGCCATTTA 59.878 37.037 0.00 0.00 0.00 1.40
2151 2249 6.071391 CCAAGTAGGTGTTATTTCTGCCATTT 60.071 38.462 0.00 0.00 0.00 2.32
2152 2250 5.418840 CCAAGTAGGTGTTATTTCTGCCATT 59.581 40.000 0.00 0.00 0.00 3.16
2153 2251 4.949856 CCAAGTAGGTGTTATTTCTGCCAT 59.050 41.667 0.00 0.00 0.00 4.40
2154 2252 4.042311 TCCAAGTAGGTGTTATTTCTGCCA 59.958 41.667 0.00 0.00 39.02 4.92
2155 2253 4.585879 TCCAAGTAGGTGTTATTTCTGCC 58.414 43.478 0.00 0.00 39.02 4.85
2156 2254 6.599638 AGATTCCAAGTAGGTGTTATTTCTGC 59.400 38.462 0.00 0.00 39.02 4.26
2157 2255 7.281100 GGAGATTCCAAGTAGGTGTTATTTCTG 59.719 40.741 0.00 0.00 36.28 3.02
2158 2256 7.339482 GGAGATTCCAAGTAGGTGTTATTTCT 58.661 38.462 0.00 0.00 36.28 2.52
2159 2257 6.542735 GGGAGATTCCAAGTAGGTGTTATTTC 59.457 42.308 0.00 0.00 38.64 2.17
2160 2258 6.424032 GGGAGATTCCAAGTAGGTGTTATTT 58.576 40.000 0.00 0.00 38.64 1.40
2161 2259 5.396436 CGGGAGATTCCAAGTAGGTGTTATT 60.396 44.000 0.00 0.00 38.64 1.40
2162 2260 4.101119 CGGGAGATTCCAAGTAGGTGTTAT 59.899 45.833 0.00 0.00 38.64 1.89
2163 2261 3.449737 CGGGAGATTCCAAGTAGGTGTTA 59.550 47.826 0.00 0.00 38.64 2.41
2164 2262 2.236395 CGGGAGATTCCAAGTAGGTGTT 59.764 50.000 0.00 0.00 38.64 3.32
2165 2263 1.831736 CGGGAGATTCCAAGTAGGTGT 59.168 52.381 0.00 0.00 38.64 4.16
2166 2264 1.139058 CCGGGAGATTCCAAGTAGGTG 59.861 57.143 0.00 0.00 38.64 4.00
2167 2265 1.273666 ACCGGGAGATTCCAAGTAGGT 60.274 52.381 6.32 0.00 38.64 3.08
2168 2266 1.413077 GACCGGGAGATTCCAAGTAGG 59.587 57.143 6.32 0.00 38.64 3.18
2169 2267 1.413077 GGACCGGGAGATTCCAAGTAG 59.587 57.143 6.32 0.00 38.64 2.57
2170 2268 1.492764 GGACCGGGAGATTCCAAGTA 58.507 55.000 6.32 0.00 38.64 2.24
2171 2269 1.272554 GGGACCGGGAGATTCCAAGT 61.273 60.000 6.32 0.00 38.64 3.16
2172 2270 1.527370 GGGACCGGGAGATTCCAAG 59.473 63.158 6.32 0.00 38.64 3.61
2173 2271 2.363975 CGGGACCGGGAGATTCCAA 61.364 63.158 6.32 0.00 38.64 3.53
2174 2272 2.762459 CGGGACCGGGAGATTCCA 60.762 66.667 6.32 0.00 38.64 3.53
2188 2286 4.578898 TATGCAGTACGCGCCGGG 62.579 66.667 5.73 0.00 46.97 5.73
2189 2287 3.327754 GTATGCAGTACGCGCCGG 61.328 66.667 5.73 0.00 46.97 6.13
2190 2288 2.278596 AGTATGCAGTACGCGCCG 60.279 61.111 5.73 0.00 46.97 6.46
2191 2289 0.804544 TTCAGTATGCAGTACGCGCC 60.805 55.000 5.73 0.00 46.97 6.53
2192 2290 0.996462 TTTCAGTATGCAGTACGCGC 59.004 50.000 5.73 0.00 46.97 6.86
2193 2291 2.259618 ACTTTCAGTATGCAGTACGCG 58.740 47.619 3.53 3.53 46.97 6.01
2194 2292 4.267928 CCTAACTTTCAGTATGCAGTACGC 59.732 45.833 0.00 3.22 38.38 4.42
2195 2293 5.647589 TCCTAACTTTCAGTATGCAGTACG 58.352 41.667 0.00 0.00 38.38 3.67
2196 2294 6.313164 GGTTCCTAACTTTCAGTATGCAGTAC 59.687 42.308 0.00 0.00 34.76 2.73
2197 2295 6.403878 GGTTCCTAACTTTCAGTATGCAGTA 58.596 40.000 0.00 0.00 34.76 2.74
2198 2296 5.246307 GGTTCCTAACTTTCAGTATGCAGT 58.754 41.667 0.00 0.00 34.76 4.40
2199 2297 4.636206 GGGTTCCTAACTTTCAGTATGCAG 59.364 45.833 0.00 0.00 34.76 4.41
2200 2298 4.566907 GGGGTTCCTAACTTTCAGTATGCA 60.567 45.833 0.00 0.00 34.76 3.96
2201 2299 3.945921 GGGGTTCCTAACTTTCAGTATGC 59.054 47.826 0.00 0.00 34.76 3.14
2202 2300 5.174037 TGGGGTTCCTAACTTTCAGTATG 57.826 43.478 0.00 0.00 37.54 2.39
2203 2301 5.312443 AGTTGGGGTTCCTAACTTTCAGTAT 59.688 40.000 9.45 0.00 33.63 2.12
2204 2302 4.661709 AGTTGGGGTTCCTAACTTTCAGTA 59.338 41.667 9.45 0.00 33.63 2.74
2205 2303 3.462205 AGTTGGGGTTCCTAACTTTCAGT 59.538 43.478 9.45 0.00 33.63 3.41
2206 2304 3.821033 CAGTTGGGGTTCCTAACTTTCAG 59.179 47.826 12.08 0.00 34.49 3.02
2207 2305 3.460340 TCAGTTGGGGTTCCTAACTTTCA 59.540 43.478 12.08 0.00 34.49 2.69
2208 2306 4.094830 TCAGTTGGGGTTCCTAACTTTC 57.905 45.455 12.08 0.00 34.49 2.62
2209 2307 4.741928 ATCAGTTGGGGTTCCTAACTTT 57.258 40.909 12.08 2.30 34.49 2.66
2210 2308 4.741928 AATCAGTTGGGGTTCCTAACTT 57.258 40.909 12.08 0.00 34.49 2.66
2211 2309 4.141018 ACAAATCAGTTGGGGTTCCTAACT 60.141 41.667 9.45 9.45 41.97 2.24
2212 2310 4.149598 ACAAATCAGTTGGGGTTCCTAAC 58.850 43.478 5.23 5.23 41.97 2.34
2213 2311 4.463050 ACAAATCAGTTGGGGTTCCTAA 57.537 40.909 0.00 0.00 41.97 2.69
2214 2312 4.105697 AGAACAAATCAGTTGGGGTTCCTA 59.894 41.667 0.00 0.00 41.97 2.94
2215 2313 3.117131 AGAACAAATCAGTTGGGGTTCCT 60.117 43.478 0.00 0.00 41.97 3.36
2216 2314 3.230976 AGAACAAATCAGTTGGGGTTCC 58.769 45.455 0.00 0.00 41.97 3.62
2217 2315 3.888930 TGAGAACAAATCAGTTGGGGTTC 59.111 43.478 0.00 0.00 41.97 3.62
2218 2316 3.909732 TGAGAACAAATCAGTTGGGGTT 58.090 40.909 0.00 0.00 41.97 4.11
2219 2317 3.593442 TGAGAACAAATCAGTTGGGGT 57.407 42.857 0.00 0.00 41.97 4.95
2220 2318 4.768968 AGATTGAGAACAAATCAGTTGGGG 59.231 41.667 0.00 0.00 41.97 4.96
2221 2319 5.972107 AGATTGAGAACAAATCAGTTGGG 57.028 39.130 0.00 0.00 41.97 4.12
2222 2320 9.350357 CAATTAGATTGAGAACAAATCAGTTGG 57.650 33.333 0.00 0.00 42.83 3.77
2223 2321 8.857216 GCAATTAGATTGAGAACAAATCAGTTG 58.143 33.333 4.92 0.00 42.83 3.16
2224 2322 8.800332 AGCAATTAGATTGAGAACAAATCAGTT 58.200 29.630 4.92 0.00 42.83 3.16
2225 2323 8.345724 AGCAATTAGATTGAGAACAAATCAGT 57.654 30.769 4.92 0.00 42.83 3.41
2226 2324 9.073368 CAAGCAATTAGATTGAGAACAAATCAG 57.927 33.333 4.92 0.00 46.32 2.90
2227 2325 7.543172 GCAAGCAATTAGATTGAGAACAAATCA 59.457 33.333 4.92 0.00 46.32 2.57
2228 2326 7.758528 AGCAAGCAATTAGATTGAGAACAAATC 59.241 33.333 4.92 0.00 46.32 2.17
2229 2327 7.544566 CAGCAAGCAATTAGATTGAGAACAAAT 59.455 33.333 4.92 0.00 46.32 2.32
2230 2328 6.864685 CAGCAAGCAATTAGATTGAGAACAAA 59.135 34.615 4.92 0.00 46.32 2.83
2231 2329 6.384224 CAGCAAGCAATTAGATTGAGAACAA 58.616 36.000 4.92 0.00 46.32 2.83
2232 2330 5.106038 CCAGCAAGCAATTAGATTGAGAACA 60.106 40.000 4.92 0.00 46.32 3.18
2233 2331 5.105997 ACCAGCAAGCAATTAGATTGAGAAC 60.106 40.000 4.92 0.00 46.32 3.01
2234 2332 5.012239 ACCAGCAAGCAATTAGATTGAGAA 58.988 37.500 4.92 0.00 46.32 2.87
2235 2333 4.592942 ACCAGCAAGCAATTAGATTGAGA 58.407 39.130 4.92 0.00 46.32 3.27
2236 2334 4.978083 ACCAGCAAGCAATTAGATTGAG 57.022 40.909 4.92 2.73 46.32 3.02
2237 2335 5.945784 AGTAACCAGCAAGCAATTAGATTGA 59.054 36.000 4.92 0.00 46.32 2.57
2238 2336 6.127925 TGAGTAACCAGCAAGCAATTAGATTG 60.128 38.462 0.00 0.00 46.16 2.67
2239 2337 5.945784 TGAGTAACCAGCAAGCAATTAGATT 59.054 36.000 0.00 0.00 0.00 2.40
2240 2338 5.500234 TGAGTAACCAGCAAGCAATTAGAT 58.500 37.500 0.00 0.00 0.00 1.98
2241 2339 4.905429 TGAGTAACCAGCAAGCAATTAGA 58.095 39.130 0.00 0.00 0.00 2.10
2242 2340 4.697352 ACTGAGTAACCAGCAAGCAATTAG 59.303 41.667 0.00 0.00 37.68 1.73
2243 2341 4.651778 ACTGAGTAACCAGCAAGCAATTA 58.348 39.130 0.00 0.00 37.68 1.40
2244 2342 3.490348 ACTGAGTAACCAGCAAGCAATT 58.510 40.909 0.00 0.00 37.68 2.32
2245 2343 3.146104 ACTGAGTAACCAGCAAGCAAT 57.854 42.857 0.00 0.00 37.68 3.56
2246 2344 2.638480 ACTGAGTAACCAGCAAGCAA 57.362 45.000 0.00 0.00 37.68 3.91
2247 2345 2.638480 AACTGAGTAACCAGCAAGCA 57.362 45.000 0.00 0.00 37.68 3.91
2248 2346 3.990318 AAAACTGAGTAACCAGCAAGC 57.010 42.857 0.00 0.00 37.68 4.01
2249 2347 9.167311 AGATATAAAAACTGAGTAACCAGCAAG 57.833 33.333 0.00 0.00 37.68 4.01
2250 2348 8.946085 CAGATATAAAAACTGAGTAACCAGCAA 58.054 33.333 0.00 0.00 37.68 3.91
2251 2349 7.552687 CCAGATATAAAAACTGAGTAACCAGCA 59.447 37.037 0.00 0.00 37.68 4.41
2252 2350 7.769044 TCCAGATATAAAAACTGAGTAACCAGC 59.231 37.037 0.00 0.00 37.68 4.85
2253 2351 9.099454 GTCCAGATATAAAAACTGAGTAACCAG 57.901 37.037 0.00 0.00 39.93 4.00
2254 2352 8.598916 TGTCCAGATATAAAAACTGAGTAACCA 58.401 33.333 0.00 0.00 34.07 3.67
2255 2353 9.099454 CTGTCCAGATATAAAAACTGAGTAACC 57.901 37.037 0.00 0.00 34.07 2.85
2256 2354 9.654663 ACTGTCCAGATATAAAAACTGAGTAAC 57.345 33.333 0.40 0.00 34.07 2.50
2257 2355 9.653287 CACTGTCCAGATATAAAAACTGAGTAA 57.347 33.333 0.40 0.00 34.07 2.24
2258 2356 8.812972 ACACTGTCCAGATATAAAAACTGAGTA 58.187 33.333 0.40 0.00 34.07 2.59
2259 2357 7.680730 ACACTGTCCAGATATAAAAACTGAGT 58.319 34.615 0.40 0.00 34.07 3.41
2260 2358 8.446273 CAACACTGTCCAGATATAAAAACTGAG 58.554 37.037 0.40 0.00 34.07 3.35
2261 2359 7.936847 ACAACACTGTCCAGATATAAAAACTGA 59.063 33.333 0.40 0.00 34.07 3.41
2262 2360 8.099364 ACAACACTGTCCAGATATAAAAACTG 57.901 34.615 0.40 0.00 0.00 3.16
2263 2361 9.787435 TTACAACACTGTCCAGATATAAAAACT 57.213 29.630 0.40 0.00 36.96 2.66
2268 2366 9.811995 GTGTATTACAACACTGTCCAGATATAA 57.188 33.333 0.40 0.00 45.12 0.98
2293 2391 6.560003 TTCACATCATAGGGACACAATAGT 57.440 37.500 0.00 0.00 0.00 2.12
2294 2392 7.050377 ACTTTCACATCATAGGGACACAATAG 58.950 38.462 0.00 0.00 0.00 1.73
2295 2393 6.957631 ACTTTCACATCATAGGGACACAATA 58.042 36.000 0.00 0.00 0.00 1.90
2296 2394 5.819991 ACTTTCACATCATAGGGACACAAT 58.180 37.500 0.00 0.00 0.00 2.71
2297 2395 5.241403 ACTTTCACATCATAGGGACACAA 57.759 39.130 0.00 0.00 0.00 3.33
2298 2396 4.908601 ACTTTCACATCATAGGGACACA 57.091 40.909 0.00 0.00 0.00 3.72
2299 2397 6.260936 CCATAACTTTCACATCATAGGGACAC 59.739 42.308 0.00 0.00 0.00 3.67
2300 2398 6.069673 ACCATAACTTTCACATCATAGGGACA 60.070 38.462 0.00 0.00 0.00 4.02
2301 2399 6.357367 ACCATAACTTTCACATCATAGGGAC 58.643 40.000 0.00 0.00 0.00 4.46
2302 2400 6.386927 AGACCATAACTTTCACATCATAGGGA 59.613 38.462 0.00 0.00 0.00 4.20
2303 2401 6.484643 CAGACCATAACTTTCACATCATAGGG 59.515 42.308 0.00 0.00 0.00 3.53
2304 2402 7.275183 TCAGACCATAACTTTCACATCATAGG 58.725 38.462 0.00 0.00 0.00 2.57
2305 2403 8.722480 TTCAGACCATAACTTTCACATCATAG 57.278 34.615 0.00 0.00 0.00 2.23
2307 2405 9.334947 CTATTCAGACCATAACTTTCACATCAT 57.665 33.333 0.00 0.00 0.00 2.45
2308 2406 7.280876 GCTATTCAGACCATAACTTTCACATCA 59.719 37.037 0.00 0.00 0.00 3.07
2309 2407 7.497249 AGCTATTCAGACCATAACTTTCACATC 59.503 37.037 0.00 0.00 0.00 3.06
2310 2408 7.341805 AGCTATTCAGACCATAACTTTCACAT 58.658 34.615 0.00 0.00 0.00 3.21
2311 2409 6.711277 AGCTATTCAGACCATAACTTTCACA 58.289 36.000 0.00 0.00 0.00 3.58
2312 2410 7.617041 AAGCTATTCAGACCATAACTTTCAC 57.383 36.000 0.00 0.00 0.00 3.18
2313 2411 9.905713 ATAAAGCTATTCAGACCATAACTTTCA 57.094 29.630 0.00 0.00 29.45 2.69
2331 2429 9.094578 ACTCAAGCAGATCCTAATATAAAGCTA 57.905 33.333 0.00 0.00 0.00 3.32
2332 2430 7.972301 ACTCAAGCAGATCCTAATATAAAGCT 58.028 34.615 0.00 0.00 0.00 3.74
2333 2431 8.093927 AGACTCAAGCAGATCCTAATATAAAGC 58.906 37.037 0.00 0.00 0.00 3.51
2334 2432 9.638239 GAGACTCAAGCAGATCCTAATATAAAG 57.362 37.037 0.00 0.00 0.00 1.85
2335 2433 9.373450 AGAGACTCAAGCAGATCCTAATATAAA 57.627 33.333 5.02 0.00 0.00 1.40
2336 2434 8.948401 AGAGACTCAAGCAGATCCTAATATAA 57.052 34.615 5.02 0.00 0.00 0.98
2338 2436 8.970020 CATAGAGACTCAAGCAGATCCTAATAT 58.030 37.037 5.02 0.00 0.00 1.28
2339 2437 8.166726 TCATAGAGACTCAAGCAGATCCTAATA 58.833 37.037 5.02 0.00 0.00 0.98
2340 2438 7.009550 TCATAGAGACTCAAGCAGATCCTAAT 58.990 38.462 5.02 0.00 0.00 1.73
2341 2439 6.368805 TCATAGAGACTCAAGCAGATCCTAA 58.631 40.000 5.02 0.00 0.00 2.69
2342 2440 5.946486 TCATAGAGACTCAAGCAGATCCTA 58.054 41.667 5.02 0.00 0.00 2.94
2343 2441 4.802307 TCATAGAGACTCAAGCAGATCCT 58.198 43.478 5.02 0.00 0.00 3.24
2344 2442 5.010922 ACATCATAGAGACTCAAGCAGATCC 59.989 44.000 5.02 0.00 0.00 3.36
2345 2443 6.088016 ACATCATAGAGACTCAAGCAGATC 57.912 41.667 5.02 0.00 0.00 2.75
2346 2444 6.324512 AGAACATCATAGAGACTCAAGCAGAT 59.675 38.462 5.02 0.00 0.00 2.90
2347 2445 5.655974 AGAACATCATAGAGACTCAAGCAGA 59.344 40.000 5.02 0.00 0.00 4.26
2348 2446 5.904941 AGAACATCATAGAGACTCAAGCAG 58.095 41.667 5.02 0.00 0.00 4.24
2349 2447 5.929058 AGAACATCATAGAGACTCAAGCA 57.071 39.130 5.02 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.