Multiple sequence alignment - TraesCS6A01G335200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G335200 chr6A 100.000 3342 0 0 1 3342 566893160 566889819 0.000000e+00 6172.0
1 TraesCS6A01G335200 chr6A 93.077 130 9 0 2756 2885 139136039 139136168 1.220000e-44 191.0
2 TraesCS6A01G335200 chr6A 83.696 92 14 1 762 852 566891892 566891801 5.940000e-13 86.1
3 TraesCS6A01G335200 chr6D 91.427 1528 101 16 68 1585 423390981 423389474 0.000000e+00 2069.0
4 TraesCS6A01G335200 chr6D 94.411 1002 47 3 1584 2581 423389308 423388312 0.000000e+00 1531.0
5 TraesCS6A01G335200 chr6D 93.900 459 28 0 2884 3342 423388322 423387864 0.000000e+00 693.0
6 TraesCS6A01G335200 chr6B 91.339 1143 83 7 446 1585 638251449 638250320 0.000000e+00 1548.0
7 TraesCS6A01G335200 chr6B 93.274 1011 51 8 1581 2581 638250158 638249155 0.000000e+00 1474.0
8 TraesCS6A01G335200 chr6B 94.553 459 25 0 2884 3342 638249165 638248707 0.000000e+00 710.0
9 TraesCS6A01G335200 chr6B 93.548 279 15 3 158 434 638339182 638338905 2.400000e-111 412.0
10 TraesCS6A01G335200 chr6B 95.028 181 9 0 2582 2762 447958195 447958375 5.460000e-73 285.0
11 TraesCS6A01G335200 chr6B 95.385 130 6 0 2757 2886 716959297 716959168 1.220000e-49 207.0
12 TraesCS6A01G335200 chr6B 81.500 200 32 3 366 561 382060524 382060722 3.450000e-35 159.0
13 TraesCS6A01G335200 chr4A 96.703 182 6 0 2581 2762 312711246 312711065 1.510000e-78 303.0
14 TraesCS6A01G335200 chr4A 96.094 128 4 1 2757 2884 312710952 312710826 1.220000e-49 207.0
15 TraesCS6A01G335200 chr4A 95.349 129 5 1 2757 2884 466155556 466155684 1.570000e-48 204.0
16 TraesCS6A01G335200 chr1B 95.604 182 8 0 2581 2762 400292121 400292302 3.260000e-75 292.0
17 TraesCS6A01G335200 chr1B 95.028 181 9 0 2582 2762 628115391 628115211 5.460000e-73 285.0
18 TraesCS6A01G335200 chr1B 94.565 184 9 1 2579 2762 618003448 618003266 1.960000e-72 283.0
19 TraesCS6A01G335200 chr1B 93.939 132 8 0 2757 2888 618003153 618003022 2.030000e-47 200.0
20 TraesCS6A01G335200 chr5A 95.556 180 8 0 2581 2760 660390894 660390715 4.220000e-74 289.0
21 TraesCS6A01G335200 chr5A 92.424 198 12 3 2566 2762 643027503 643027308 2.540000e-71 279.0
22 TraesCS6A01G335200 chr5A 93.893 131 7 1 2757 2886 558335341 558335211 2.630000e-46 196.0
23 TraesCS6A01G335200 chr5A 80.000 145 25 2 420 560 40615097 40614953 1.640000e-18 104.0
24 TraesCS6A01G335200 chr5A 85.227 88 11 2 820 905 678930465 678930552 4.590000e-14 89.8
25 TraesCS6A01G335200 chr7D 93.333 195 11 2 2568 2762 40421560 40421368 1.520000e-73 287.0
26 TraesCS6A01G335200 chr7D 75.564 266 47 12 1113 1371 396136520 396136774 7.580000e-22 115.0
27 TraesCS6A01G335200 chr7D 84.685 111 14 3 1261 1371 31111275 31111382 1.270000e-19 108.0
28 TraesCS6A01G335200 chr2B 94.565 184 9 1 2579 2762 42956103 42956285 1.960000e-72 283.0
29 TraesCS6A01G335200 chr2B 80.347 173 25 5 1201 1371 404417082 404416917 4.530000e-24 122.0
30 TraesCS6A01G335200 chr7A 94.531 128 7 0 2757 2884 708222978 708222851 7.310000e-47 198.0
31 TraesCS6A01G335200 chr7A 76.389 216 41 7 350 558 85218940 85219152 1.270000e-19 108.0
32 TraesCS6A01G335200 chr2A 92.701 137 8 2 2757 2891 740399212 740399348 2.630000e-46 196.0
33 TraesCS6A01G335200 chr2A 93.750 128 8 0 2757 2884 745217551 745217424 3.400000e-45 193.0
34 TraesCS6A01G335200 chr2A 81.503 173 24 4 1201 1371 447145680 447145514 5.820000e-28 135.0
35 TraesCS6A01G335200 chr2A 78.919 185 26 6 1192 1371 117384569 117384393 2.730000e-21 113.0
36 TraesCS6A01G335200 chr2A 77.419 155 28 5 761 913 765030129 765030278 5.940000e-13 86.1
37 TraesCS6A01G335200 chr3B 80.513 195 32 4 356 545 254947877 254948070 9.660000e-31 145.0
38 TraesCS6A01G335200 chr2D 82.081 173 23 4 1201 1371 336965840 336965674 1.250000e-29 141.0
39 TraesCS6A01G335200 chr2D 82.400 125 16 6 789 909 576197580 576197702 1.640000e-18 104.0
40 TraesCS6A01G335200 chr3A 78.974 195 27 9 744 935 51283548 51283365 1.630000e-23 121.0
41 TraesCS6A01G335200 chr3A 86.538 104 11 3 1258 1360 51283545 51283444 9.800000e-21 111.0
42 TraesCS6A01G335200 chr3A 78.286 175 25 6 386 555 725565342 725565176 2.120000e-17 100.0
43 TraesCS6A01G335200 chr1A 89.655 87 8 1 480 565 469834047 469834133 3.530000e-20 110.0
44 TraesCS6A01G335200 chr7B 81.651 109 11 7 447 552 134219459 134219357 7.680000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G335200 chr6A 566889819 566893160 3341 True 3129.05 6172 91.848000 1 3342 2 chr6A.!!$R1 3341
1 TraesCS6A01G335200 chr6D 423387864 423390981 3117 True 1431.00 2069 93.246000 68 3342 3 chr6D.!!$R1 3274
2 TraesCS6A01G335200 chr6B 638248707 638251449 2742 True 1244.00 1548 93.055333 446 3342 3 chr6B.!!$R3 2896

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
319 320 0.036388 TTTGTCTCACCTCCCATCGC 60.036 55.0 0.0 0.0 0.0 4.58 F
993 1009 0.036732 TCCACTGCCTCATCAACACC 59.963 55.0 0.0 0.0 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2007 2362 1.002576 CTGCTTGCACAATTGACACGA 60.003 47.619 13.59 0.0 0.00 4.35 R
2498 2860 0.179073 GCACCAGCTACACGATCCAT 60.179 55.000 0.00 0.0 37.91 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.188062 GGTTTGTCGGAACATACCCA 57.812 50.000 6.85 0.00 46.18 4.51
38 39 2.506444 GGTTTGTCGGAACATACCCAA 58.494 47.619 6.85 0.00 46.18 4.12
39 40 2.486592 GGTTTGTCGGAACATACCCAAG 59.513 50.000 6.85 0.00 46.18 3.61
40 41 3.404899 GTTTGTCGGAACATACCCAAGA 58.595 45.455 0.00 0.00 34.73 3.02
41 42 3.328382 TTGTCGGAACATACCCAAGAG 57.672 47.619 0.00 0.00 34.73 2.85
42 43 1.553248 TGTCGGAACATACCCAAGAGG 59.447 52.381 0.00 0.00 43.78 3.69
54 55 2.094100 CCAAGAGGGATCTGCTAGGA 57.906 55.000 0.00 0.00 40.01 2.94
55 56 2.402564 CCAAGAGGGATCTGCTAGGAA 58.597 52.381 0.00 0.00 40.01 3.36
56 57 2.368221 CCAAGAGGGATCTGCTAGGAAG 59.632 54.545 0.00 0.00 40.01 3.46
57 58 5.378150 CCAAGAGGGATCTGCTAGGAAGC 62.378 56.522 0.00 0.00 44.40 3.86
80 81 6.615726 AGCCCTCAATGATAAGAAGGTAAGTA 59.384 38.462 0.00 0.00 0.00 2.24
83 84 8.651389 CCCTCAATGATAAGAAGGTAAGTATGA 58.349 37.037 0.00 0.00 0.00 2.15
111 112 8.169977 ACAGATTATGAATCGGCATATGTTTT 57.830 30.769 4.29 0.00 42.75 2.43
112 113 9.283768 ACAGATTATGAATCGGCATATGTTTTA 57.716 29.630 4.29 0.00 42.75 1.52
160 161 4.358214 TGTACCCTCCTTACATCATCACA 58.642 43.478 0.00 0.00 0.00 3.58
206 207 6.075280 GCAAATGCATGCTTTACTCAAAAAG 58.925 36.000 20.33 3.54 43.06 2.27
223 224 4.616181 AAAAGCATTTCCTATCGAACGG 57.384 40.909 0.00 0.00 37.28 4.44
224 225 2.981859 AGCATTTCCTATCGAACGGT 57.018 45.000 0.00 0.00 0.00 4.83
296 297 5.828859 TCTCTATTACTAGTGGAGAGTTGGC 59.171 44.000 20.90 0.00 36.01 4.52
302 303 2.664402 AGTGGAGAGTTGGCATGTTT 57.336 45.000 0.00 0.00 0.00 2.83
303 304 2.233271 AGTGGAGAGTTGGCATGTTTG 58.767 47.619 0.00 0.00 0.00 2.93
306 307 2.158623 TGGAGAGTTGGCATGTTTGTCT 60.159 45.455 0.00 0.00 0.00 3.41
319 320 0.036388 TTTGTCTCACCTCCCATCGC 60.036 55.000 0.00 0.00 0.00 4.58
320 321 0.904865 TTGTCTCACCTCCCATCGCT 60.905 55.000 0.00 0.00 0.00 4.93
321 322 1.323271 TGTCTCACCTCCCATCGCTC 61.323 60.000 0.00 0.00 0.00 5.03
326 327 0.605589 CACCTCCCATCGCTCTATCC 59.394 60.000 0.00 0.00 0.00 2.59
376 379 7.315247 TGCATTACACACTGATATTTGGTAC 57.685 36.000 0.00 0.00 0.00 3.34
413 416 7.219922 CGTTTTAATTTTGTGATTAGTGCTGC 58.780 34.615 0.00 0.00 0.00 5.25
419 422 3.070476 TGTGATTAGTGCTGCCATTGA 57.930 42.857 0.00 0.00 0.00 2.57
463 469 2.751166 AAACATGTAGAGCGCTCACT 57.249 45.000 36.87 21.32 0.00 3.41
587 594 3.705043 ATGAATCAATTTGCTCGCCTC 57.295 42.857 0.00 0.00 0.00 4.70
664 673 5.164954 GGTTTGCAATAATGTAAGCCGAAA 58.835 37.500 0.00 0.00 41.21 3.46
665 674 5.635700 GGTTTGCAATAATGTAAGCCGAAAA 59.364 36.000 0.00 0.00 41.21 2.29
666 675 6.312672 GGTTTGCAATAATGTAAGCCGAAAAT 59.687 34.615 0.00 0.00 41.21 1.82
683 692 4.681483 CGAAAATGTGCTTTCCTTTCCTTC 59.319 41.667 0.00 0.00 32.63 3.46
839 855 8.979534 TGACCATATCCAAATCAAATCAAATCA 58.020 29.630 0.00 0.00 0.00 2.57
873 889 8.846211 CCAAACCTCAACTAGATCAAAACTTTA 58.154 33.333 0.00 0.00 0.00 1.85
962 978 9.236006 TCTACTATTAAAGGAGAGTTTGTACGT 57.764 33.333 0.00 0.00 40.54 3.57
988 1004 0.325933 CACCTTCCACTGCCTCATCA 59.674 55.000 0.00 0.00 0.00 3.07
993 1009 0.036732 TCCACTGCCTCATCAACACC 59.963 55.000 0.00 0.00 0.00 4.16
994 1010 0.250858 CCACTGCCTCATCAACACCA 60.251 55.000 0.00 0.00 0.00 4.17
1004 1020 1.745087 CATCAACACCATTTCCCTCCG 59.255 52.381 0.00 0.00 0.00 4.63
1038 1054 3.069318 GTTCGCTCGACCCTCCCT 61.069 66.667 0.00 0.00 0.00 4.20
1056 1072 2.158370 CCCTGTTGGTTTTTCCCCTACT 60.158 50.000 0.00 0.00 34.77 2.57
1071 1088 7.628501 TTCCCCTACTTTAGTTTTTCTCTCT 57.371 36.000 0.00 0.00 0.00 3.10
1097 1115 3.326297 CCCCCTGGTTTGCAAAAATCTAA 59.674 43.478 14.67 0.00 0.00 2.10
1103 1121 9.061435 CCCTGGTTTGCAAAAATCTAATAAAAA 57.939 29.630 14.67 0.00 0.00 1.94
1131 1150 9.191479 TGGTGTTTTTCTTTCATTTCCTACTAA 57.809 29.630 0.00 0.00 0.00 2.24
1148 1167 6.318648 TCCTACTAAAAATCATGACATGCACC 59.681 38.462 10.76 0.00 0.00 5.01
1150 1169 5.957798 ACTAAAAATCATGACATGCACCAG 58.042 37.500 10.76 5.54 0.00 4.00
1157 1176 0.975887 TGACATGCACCAGCTCACTA 59.024 50.000 0.00 0.00 42.74 2.74
1161 1180 2.816087 ACATGCACCAGCTCACTAAAAG 59.184 45.455 0.00 0.00 42.74 2.27
1232 1251 7.587037 TCAAATCTCATCAAAACCTCAACTT 57.413 32.000 0.00 0.00 0.00 2.66
1233 1252 7.428020 TCAAATCTCATCAAAACCTCAACTTG 58.572 34.615 0.00 0.00 0.00 3.16
1255 1274 9.412460 ACTTGATCAATATTTTCCTTGCATCTA 57.588 29.630 8.96 0.00 0.00 1.98
1406 1425 3.266636 TGTAATTGGTACATGCACCTCG 58.733 45.455 16.20 0.00 37.81 4.63
1464 1483 5.709631 TCCCACTGAAAATCAAATCGATTCA 59.290 36.000 11.83 3.11 43.83 2.57
1496 1515 4.978705 TGGTTTTTCCCCGCCCGG 62.979 66.667 0.00 0.00 34.77 5.73
1570 1589 4.571919 TCGATGTTTTCCGTTCCTTGTAT 58.428 39.130 0.00 0.00 0.00 2.29
1693 2045 2.924926 GCATTCCACGTACACGATTACA 59.075 45.455 9.04 0.00 43.02 2.41
1734 2089 4.100808 AGCAATTCCTAAAACACCAAGCAA 59.899 37.500 0.00 0.00 0.00 3.91
1775 2130 4.737054 CCACAATTACTTCAGGAACATGC 58.263 43.478 0.00 0.00 0.00 4.06
1824 2179 4.197750 CCATCCTCTTGAGTCTGGATTTG 58.802 47.826 8.98 0.00 37.22 2.32
1869 2224 0.768221 AACACTCCTCCTGGCCTTGA 60.768 55.000 3.32 0.00 0.00 3.02
1929 2284 9.348476 TGTTATTGTGTACCATATAACATGCAT 57.652 29.630 14.64 0.00 31.89 3.96
1950 2305 8.962884 TGCATGACAACTAAATATCAGTGTAT 57.037 30.769 0.00 0.00 0.00 2.29
1969 2324 7.555554 CAGTGTATTTTTCTCTCCATCCATCTT 59.444 37.037 0.00 0.00 0.00 2.40
2092 2451 1.000739 CAACCAGGGCCCATGTGAT 59.999 57.895 27.56 0.00 0.00 3.06
2173 2532 0.842030 TCCCTCAAGGATGCAGGTGT 60.842 55.000 0.00 0.00 40.93 4.16
2211 2573 4.584394 CCGCATCAACGAACTATTTAACC 58.416 43.478 0.00 0.00 34.06 2.85
2222 2584 2.026636 ACTATTTAACCGAGCTTGGCCA 60.027 45.455 20.81 0.00 0.00 5.36
2298 2660 9.788960 CTTAACTAGAATTTGTTTATTCTGCCC 57.211 33.333 0.00 0.00 43.05 5.36
2312 2674 8.789762 GTTTATTCTGCCCTTTTGAAGTAGTTA 58.210 33.333 0.00 0.00 0.00 2.24
2336 2698 5.929058 AAGAGACTCTTGTAGCATGATCA 57.071 39.130 17.02 0.00 34.98 2.92
2404 2766 7.518303 TGTAGGTTATATTTAGGGGGCAACTAT 59.482 37.037 0.00 0.00 0.00 2.12
2454 2816 3.124921 GCCATGTCCCGACAACCG 61.125 66.667 0.91 0.00 45.41 4.44
2517 2879 0.179073 ATGGATCGTGTAGCTGGTGC 60.179 55.000 0.00 0.00 40.05 5.01
2529 2891 2.464157 GCTGGTGCTGAGAAGTACTT 57.536 50.000 8.13 8.13 36.03 2.24
2530 2892 2.772287 GCTGGTGCTGAGAAGTACTTT 58.228 47.619 10.02 0.00 36.03 2.66
2571 2933 2.252714 TCCCAAAACCCAAATGCTACC 58.747 47.619 0.00 0.00 0.00 3.18
2572 2934 2.158234 TCCCAAAACCCAAATGCTACCT 60.158 45.455 0.00 0.00 0.00 3.08
2573 2935 2.637382 CCCAAAACCCAAATGCTACCTT 59.363 45.455 0.00 0.00 0.00 3.50
2574 2936 3.072330 CCCAAAACCCAAATGCTACCTTT 59.928 43.478 0.00 0.00 0.00 3.11
2575 2937 4.314961 CCAAAACCCAAATGCTACCTTTC 58.685 43.478 0.00 0.00 0.00 2.62
2576 2938 4.202305 CCAAAACCCAAATGCTACCTTTCA 60.202 41.667 0.00 0.00 0.00 2.69
2577 2939 4.600692 AAACCCAAATGCTACCTTTCAC 57.399 40.909 0.00 0.00 0.00 3.18
2578 2940 3.525800 ACCCAAATGCTACCTTTCACT 57.474 42.857 0.00 0.00 0.00 3.41
2579 2941 3.421844 ACCCAAATGCTACCTTTCACTC 58.578 45.455 0.00 0.00 0.00 3.51
2580 2942 2.755103 CCCAAATGCTACCTTTCACTCC 59.245 50.000 0.00 0.00 0.00 3.85
2581 2943 2.420022 CCAAATGCTACCTTTCACTCCG 59.580 50.000 0.00 0.00 0.00 4.63
2582 2944 2.403252 AATGCTACCTTTCACTCCGG 57.597 50.000 0.00 0.00 0.00 5.14
2583 2945 0.541863 ATGCTACCTTTCACTCCGGG 59.458 55.000 0.00 0.00 0.00 5.73
2584 2946 0.543410 TGCTACCTTTCACTCCGGGA 60.543 55.000 0.00 0.00 0.00 5.14
2585 2947 0.611714 GCTACCTTTCACTCCGGGAA 59.388 55.000 0.00 0.00 0.00 3.97
2586 2948 1.002773 GCTACCTTTCACTCCGGGAAA 59.997 52.381 0.00 2.60 33.52 3.13
2587 2949 2.935676 GCTACCTTTCACTCCGGGAAAG 60.936 54.545 19.25 19.25 46.79 2.62
2588 2950 1.137697 ACCTTTCACTCCGGGAAAGT 58.862 50.000 22.38 9.22 46.15 2.66
2589 2951 2.332117 ACCTTTCACTCCGGGAAAGTA 58.668 47.619 22.38 0.00 46.15 2.24
2590 2952 2.910977 ACCTTTCACTCCGGGAAAGTAT 59.089 45.455 22.38 12.45 46.15 2.12
2591 2953 3.055312 ACCTTTCACTCCGGGAAAGTATC 60.055 47.826 22.38 0.00 46.15 2.24
2592 2954 3.197983 CCTTTCACTCCGGGAAAGTATCT 59.802 47.826 22.38 0.00 46.15 1.98
2593 2955 4.404715 CCTTTCACTCCGGGAAAGTATCTA 59.595 45.833 22.38 0.00 46.15 1.98
2594 2956 5.452077 CCTTTCACTCCGGGAAAGTATCTAG 60.452 48.000 22.38 8.86 46.15 2.43
2595 2957 4.246712 TCACTCCGGGAAAGTATCTAGT 57.753 45.455 0.00 0.00 0.00 2.57
2596 2958 3.952323 TCACTCCGGGAAAGTATCTAGTG 59.048 47.826 0.00 3.74 35.54 2.74
2597 2959 2.694109 ACTCCGGGAAAGTATCTAGTGC 59.306 50.000 0.00 0.00 0.00 4.40
2598 2960 2.959707 CTCCGGGAAAGTATCTAGTGCT 59.040 50.000 0.00 0.00 0.00 4.40
2599 2961 2.957006 TCCGGGAAAGTATCTAGTGCTC 59.043 50.000 0.00 0.00 0.00 4.26
2600 2962 2.036089 CCGGGAAAGTATCTAGTGCTCC 59.964 54.545 0.00 0.00 0.00 4.70
2601 2963 2.036089 CGGGAAAGTATCTAGTGCTCCC 59.964 54.545 0.00 0.00 0.00 4.30
2602 2964 3.039011 GGGAAAGTATCTAGTGCTCCCA 58.961 50.000 0.00 0.00 35.13 4.37
2603 2965 3.070302 GGGAAAGTATCTAGTGCTCCCAG 59.930 52.174 0.00 0.00 35.13 4.45
2604 2966 3.961408 GGAAAGTATCTAGTGCTCCCAGA 59.039 47.826 0.00 0.00 0.00 3.86
2605 2967 4.202172 GGAAAGTATCTAGTGCTCCCAGAC 60.202 50.000 0.00 0.00 0.00 3.51
2606 2968 3.963476 AGTATCTAGTGCTCCCAGACT 57.037 47.619 0.00 0.00 0.00 3.24
2607 2969 4.258457 AGTATCTAGTGCTCCCAGACTT 57.742 45.455 0.00 0.00 0.00 3.01
2608 2970 3.957497 AGTATCTAGTGCTCCCAGACTTG 59.043 47.826 0.00 0.00 0.00 3.16
2609 2971 1.561643 TCTAGTGCTCCCAGACTTGG 58.438 55.000 0.00 0.00 44.60 3.61
2617 2979 2.352805 CCAGACTTGGGGTGCTCC 59.647 66.667 0.00 0.00 41.05 4.70
2628 2990 4.329545 GTGCTCCCGGTGCTCCAA 62.330 66.667 16.01 0.00 0.00 3.53
2629 2991 3.565214 TGCTCCCGGTGCTCCAAA 61.565 61.111 16.01 0.00 0.00 3.28
2630 2992 2.044946 GCTCCCGGTGCTCCAAAT 60.045 61.111 0.00 0.00 0.00 2.32
2631 2993 2.409870 GCTCCCGGTGCTCCAAATG 61.410 63.158 0.00 0.00 0.00 2.32
2632 2994 1.002134 CTCCCGGTGCTCCAAATGT 60.002 57.895 0.00 0.00 0.00 2.71
2633 2995 1.002624 TCCCGGTGCTCCAAATGTC 60.003 57.895 0.00 0.00 0.00 3.06
2634 2996 1.002134 CCCGGTGCTCCAAATGTCT 60.002 57.895 0.00 0.00 0.00 3.41
2635 2997 1.308069 CCCGGTGCTCCAAATGTCTG 61.308 60.000 0.00 0.00 0.00 3.51
2636 2998 0.321564 CCGGTGCTCCAAATGTCTGA 60.322 55.000 5.52 0.00 0.00 3.27
2637 2999 1.522668 CGGTGCTCCAAATGTCTGAA 58.477 50.000 5.52 0.00 0.00 3.02
2638 3000 1.879380 CGGTGCTCCAAATGTCTGAAA 59.121 47.619 5.52 0.00 0.00 2.69
2639 3001 2.293122 CGGTGCTCCAAATGTCTGAAAA 59.707 45.455 5.52 0.00 0.00 2.29
2640 3002 3.243367 CGGTGCTCCAAATGTCTGAAAAA 60.243 43.478 5.52 0.00 0.00 1.94
2641 3003 4.559300 CGGTGCTCCAAATGTCTGAAAAAT 60.559 41.667 5.52 0.00 0.00 1.82
2642 3004 5.335583 CGGTGCTCCAAATGTCTGAAAAATA 60.336 40.000 5.52 0.00 0.00 1.40
2643 3005 6.625740 CGGTGCTCCAAATGTCTGAAAAATAT 60.626 38.462 5.52 0.00 0.00 1.28
2644 3006 7.099120 GGTGCTCCAAATGTCTGAAAAATATT 58.901 34.615 0.00 0.00 0.00 1.28
2645 3007 7.603784 GGTGCTCCAAATGTCTGAAAAATATTT 59.396 33.333 0.00 0.00 0.00 1.40
2646 3008 8.992073 GTGCTCCAAATGTCTGAAAAATATTTT 58.008 29.630 7.64 7.64 0.00 1.82
2647 3009 9.558396 TGCTCCAAATGTCTGAAAAATATTTTT 57.442 25.926 22.95 22.95 42.60 1.94
2690 3052 2.642139 AAAATGCAGCAGATCAACGG 57.358 45.000 0.00 0.00 0.00 4.44
2691 3053 1.825090 AAATGCAGCAGATCAACGGA 58.175 45.000 0.00 0.00 0.00 4.69
2692 3054 1.825090 AATGCAGCAGATCAACGGAA 58.175 45.000 0.00 0.00 0.00 4.30
2693 3055 1.089920 ATGCAGCAGATCAACGGAAC 58.910 50.000 0.00 0.00 0.00 3.62
2694 3056 0.250252 TGCAGCAGATCAACGGAACA 60.250 50.000 0.00 0.00 0.00 3.18
2695 3057 1.089920 GCAGCAGATCAACGGAACAT 58.910 50.000 0.00 0.00 0.00 2.71
2696 3058 1.063174 GCAGCAGATCAACGGAACATC 59.937 52.381 0.00 0.00 0.00 3.06
2697 3059 1.325640 CAGCAGATCAACGGAACATCG 59.674 52.381 0.00 0.00 0.00 3.84
2698 3060 1.204704 AGCAGATCAACGGAACATCGA 59.795 47.619 0.00 0.00 0.00 3.59
2699 3061 2.159043 AGCAGATCAACGGAACATCGAT 60.159 45.455 0.00 0.00 0.00 3.59
2700 3062 2.033407 GCAGATCAACGGAACATCGATG 60.033 50.000 23.68 23.68 0.00 3.84
2701 3063 3.190079 CAGATCAACGGAACATCGATGT 58.810 45.455 25.18 25.18 44.20 3.06
2702 3064 3.243877 CAGATCAACGGAACATCGATGTC 59.756 47.826 30.06 21.59 40.80 3.06
2703 3065 3.131223 AGATCAACGGAACATCGATGTCT 59.869 43.478 30.06 19.72 40.80 3.41
2704 3066 2.876091 TCAACGGAACATCGATGTCTC 58.124 47.619 30.06 25.22 40.80 3.36
2705 3067 2.492088 TCAACGGAACATCGATGTCTCT 59.508 45.455 30.06 15.98 40.80 3.10
2706 3068 3.056821 TCAACGGAACATCGATGTCTCTT 60.057 43.478 30.06 15.59 40.80 2.85
2707 3069 2.881074 ACGGAACATCGATGTCTCTTG 58.119 47.619 30.06 22.82 40.80 3.02
2708 3070 2.231478 ACGGAACATCGATGTCTCTTGT 59.769 45.455 30.06 23.30 40.80 3.16
2709 3071 2.854777 CGGAACATCGATGTCTCTTGTC 59.145 50.000 30.06 21.40 40.80 3.18
2710 3072 3.673323 CGGAACATCGATGTCTCTTGTCA 60.673 47.826 30.06 0.00 40.80 3.58
2711 3073 3.614616 GGAACATCGATGTCTCTTGTCAC 59.385 47.826 30.06 13.06 40.80 3.67
2712 3074 3.942130 ACATCGATGTCTCTTGTCACA 57.058 42.857 25.18 0.00 35.87 3.58
2713 3075 4.257267 ACATCGATGTCTCTTGTCACAA 57.743 40.909 25.18 0.00 35.87 3.33
2714 3076 4.631131 ACATCGATGTCTCTTGTCACAAA 58.369 39.130 25.18 0.00 35.87 2.83
2715 3077 5.056480 ACATCGATGTCTCTTGTCACAAAA 58.944 37.500 25.18 0.00 35.87 2.44
2716 3078 5.702670 ACATCGATGTCTCTTGTCACAAAAT 59.297 36.000 25.18 0.00 35.87 1.82
2717 3079 6.205464 ACATCGATGTCTCTTGTCACAAAATT 59.795 34.615 25.18 0.00 35.87 1.82
2718 3080 6.618287 TCGATGTCTCTTGTCACAAAATTT 57.382 33.333 0.00 0.00 0.00 1.82
2719 3081 6.658831 TCGATGTCTCTTGTCACAAAATTTC 58.341 36.000 0.00 0.00 0.00 2.17
2720 3082 6.259829 TCGATGTCTCTTGTCACAAAATTTCA 59.740 34.615 0.00 0.00 0.00 2.69
2721 3083 6.912051 CGATGTCTCTTGTCACAAAATTTCAA 59.088 34.615 0.00 0.00 0.00 2.69
2722 3084 7.431960 CGATGTCTCTTGTCACAAAATTTCAAA 59.568 33.333 0.00 0.00 0.00 2.69
2723 3085 9.252962 GATGTCTCTTGTCACAAAATTTCAAAT 57.747 29.630 0.00 0.00 0.00 2.32
2724 3086 8.633075 TGTCTCTTGTCACAAAATTTCAAATC 57.367 30.769 0.00 0.00 0.00 2.17
2725 3087 8.249638 TGTCTCTTGTCACAAAATTTCAAATCA 58.750 29.630 0.00 0.00 0.00 2.57
2726 3088 9.086336 GTCTCTTGTCACAAAATTTCAAATCAA 57.914 29.630 0.00 0.00 0.00 2.57
2727 3089 9.650539 TCTCTTGTCACAAAATTTCAAATCAAA 57.349 25.926 0.00 0.00 0.00 2.69
2732 3094 9.699985 TGTCACAAAATTTCAAATCAAAATTCG 57.300 25.926 0.00 0.00 35.75 3.34
2733 3095 9.913451 GTCACAAAATTTCAAATCAAAATTCGA 57.087 25.926 0.00 0.00 35.75 3.71
2741 3103 8.765044 TTTCAAATCAAAATTCGAAACATTGC 57.235 26.923 0.00 0.00 0.00 3.56
2742 3104 7.712264 TCAAATCAAAATTCGAAACATTGCT 57.288 28.000 0.00 0.00 0.00 3.91
2743 3105 7.786114 TCAAATCAAAATTCGAAACATTGCTC 58.214 30.769 0.00 0.00 0.00 4.26
2744 3106 5.997732 ATCAAAATTCGAAACATTGCTCG 57.002 34.783 0.00 3.07 36.39 5.03
2745 3107 5.102020 TCAAAATTCGAAACATTGCTCGA 57.898 34.783 0.00 7.21 42.05 4.04
2746 3108 5.146460 TCAAAATTCGAAACATTGCTCGAG 58.854 37.500 8.45 8.45 44.25 4.04
2747 3109 5.049749 TCAAAATTCGAAACATTGCTCGAGA 60.050 36.000 18.75 0.00 44.25 4.04
2748 3110 5.551760 AAATTCGAAACATTGCTCGAGAT 57.448 34.783 18.75 0.00 44.25 2.75
2749 3111 6.662414 AAATTCGAAACATTGCTCGAGATA 57.338 33.333 18.75 2.54 44.25 1.98
2750 3112 5.643339 ATTCGAAACATTGCTCGAGATAC 57.357 39.130 18.75 0.00 44.25 2.24
2751 3113 4.104696 TCGAAACATTGCTCGAGATACA 57.895 40.909 18.75 1.12 39.07 2.29
2752 3114 4.490743 TCGAAACATTGCTCGAGATACAA 58.509 39.130 18.75 11.56 39.07 2.41
2753 3115 4.926832 TCGAAACATTGCTCGAGATACAAA 59.073 37.500 18.75 2.00 39.07 2.83
2754 3116 5.407084 TCGAAACATTGCTCGAGATACAAAA 59.593 36.000 18.75 0.13 39.07 2.44
2755 3117 6.092122 TCGAAACATTGCTCGAGATACAAAAT 59.908 34.615 18.75 2.60 39.07 1.82
2756 3118 6.742718 CGAAACATTGCTCGAGATACAAAATT 59.257 34.615 18.75 7.02 37.23 1.82
2757 3119 7.253092 CGAAACATTGCTCGAGATACAAAATTG 60.253 37.037 18.75 8.87 37.23 2.32
2758 3120 6.741992 ACATTGCTCGAGATACAAAATTGA 57.258 33.333 18.75 0.00 0.00 2.57
2759 3121 6.546395 ACATTGCTCGAGATACAAAATTGAC 58.454 36.000 18.75 0.00 0.00 3.18
2760 3122 6.149308 ACATTGCTCGAGATACAAAATTGACA 59.851 34.615 18.75 0.00 0.00 3.58
2761 3123 6.552859 TTGCTCGAGATACAAAATTGACAA 57.447 33.333 18.75 2.82 0.00 3.18
2762 3124 6.169419 TGCTCGAGATACAAAATTGACAAG 57.831 37.500 18.75 0.00 0.00 3.16
2763 3125 5.931724 TGCTCGAGATACAAAATTGACAAGA 59.068 36.000 18.75 0.00 0.00 3.02
2764 3126 6.091305 TGCTCGAGATACAAAATTGACAAGAG 59.909 38.462 18.75 2.92 0.00 2.85
2765 3127 6.311445 GCTCGAGATACAAAATTGACAAGAGA 59.689 38.462 18.75 0.00 0.00 3.10
2766 3128 7.582435 TCGAGATACAAAATTGACAAGAGAC 57.418 36.000 0.00 0.00 0.00 3.36
2767 3129 7.151976 TCGAGATACAAAATTGACAAGAGACA 58.848 34.615 0.00 0.00 0.00 3.41
2768 3130 7.819415 TCGAGATACAAAATTGACAAGAGACAT 59.181 33.333 0.00 0.00 0.00 3.06
2769 3131 8.113062 CGAGATACAAAATTGACAAGAGACATC 58.887 37.037 0.00 0.00 0.00 3.06
2770 3132 7.968246 AGATACAAAATTGACAAGAGACATCG 58.032 34.615 0.00 0.00 0.00 3.84
2771 3133 7.819415 AGATACAAAATTGACAAGAGACATCGA 59.181 33.333 0.00 0.00 0.00 3.59
2772 3134 6.808008 ACAAAATTGACAAGAGACATCGAT 57.192 33.333 0.00 0.00 0.00 3.59
2773 3135 6.605849 ACAAAATTGACAAGAGACATCGATG 58.394 36.000 23.68 23.68 0.00 3.84
2774 3136 6.205464 ACAAAATTGACAAGAGACATCGATGT 59.795 34.615 30.37 30.37 45.16 3.06
2775 3137 6.808008 AAATTGACAAGAGACATCGATGTT 57.192 33.333 30.46 20.01 41.95 2.71
2776 3138 6.414408 AATTGACAAGAGACATCGATGTTC 57.586 37.500 30.46 25.63 41.95 3.18
2777 3139 3.849911 TGACAAGAGACATCGATGTTCC 58.150 45.455 30.46 23.29 41.95 3.62
2778 3140 2.854777 GACAAGAGACATCGATGTTCCG 59.145 50.000 30.46 21.82 41.95 4.30
2779 3141 2.231478 ACAAGAGACATCGATGTTCCGT 59.769 45.455 30.46 22.32 41.95 4.69
2780 3142 2.853731 AGAGACATCGATGTTCCGTC 57.146 50.000 30.46 22.49 41.95 4.79
2781 3143 1.064208 AGAGACATCGATGTTCCGTCG 59.936 52.381 30.46 2.94 41.95 5.12
2786 3148 3.812097 TCGATGTTCCGTCGATACG 57.188 52.632 4.55 0.00 45.17 3.06
2787 3149 0.316442 TCGATGTTCCGTCGATACGC 60.316 55.000 4.55 0.00 45.17 4.42
2788 3150 2.667195 TCGATGTTCCGTCGATACGCT 61.667 52.381 4.55 0.00 45.17 5.07
2789 3151 4.734447 TCGATGTTCCGTCGATACGCTG 62.734 54.545 4.55 0.00 45.17 5.18
2796 3158 2.435685 CGTCGATACGCTGCATTTTT 57.564 45.000 0.00 0.00 43.12 1.94
2842 3204 5.905480 AAAAATGTTTTTCACATCGGAGC 57.095 34.783 0.00 0.00 46.23 4.70
2843 3205 4.582701 AAATGTTTTTCACATCGGAGCA 57.417 36.364 0.00 0.00 46.23 4.26
2844 3206 3.559238 ATGTTTTTCACATCGGAGCAC 57.441 42.857 0.00 0.00 43.17 4.40
2845 3207 1.606668 TGTTTTTCACATCGGAGCACC 59.393 47.619 0.00 0.00 0.00 5.01
2846 3208 5.206159 ATGTTTTTCACATCGGAGCACCG 62.206 47.826 17.19 17.19 43.17 4.94
2864 3226 3.483869 GGAGCACCCTAGGCCTGG 61.484 72.222 17.99 13.68 0.00 4.45
2870 3232 2.446802 CCCTAGGCCTGGGAGGAC 60.447 72.222 35.48 0.00 46.64 3.85
2875 3237 4.401657 GGCCTGGGAGGACTACAT 57.598 61.111 0.00 0.00 41.45 2.29
2876 3238 3.552594 GGCCTGGGAGGACTACATA 57.447 57.895 0.00 0.00 41.45 2.29
2877 3239 1.049402 GGCCTGGGAGGACTACATAC 58.951 60.000 0.00 0.00 41.45 2.39
2878 3240 1.413227 GGCCTGGGAGGACTACATACT 60.413 57.143 0.00 0.00 41.45 2.12
2879 3241 2.399580 GCCTGGGAGGACTACATACTT 58.600 52.381 0.00 0.00 37.67 2.24
2880 3242 2.772515 GCCTGGGAGGACTACATACTTT 59.227 50.000 0.00 0.00 37.67 2.66
2881 3243 3.181464 GCCTGGGAGGACTACATACTTTC 60.181 52.174 0.00 0.00 37.67 2.62
2882 3244 3.388350 CCTGGGAGGACTACATACTTTCC 59.612 52.174 0.00 0.00 37.67 3.13
2883 3245 3.381335 TGGGAGGACTACATACTTTCCC 58.619 50.000 0.00 0.00 42.49 3.97
2915 3277 2.406452 CTTTTGCGCACACCCTCACC 62.406 60.000 11.12 0.00 0.00 4.02
2916 3278 3.705934 TTTGCGCACACCCTCACCA 62.706 57.895 11.12 0.00 0.00 4.17
2940 3302 7.241376 CACTTACTTTTCGTATCATTTCCACC 58.759 38.462 0.00 0.00 0.00 4.61
3003 3365 1.742308 TTTCCAGGTCTGCCCTTAGT 58.258 50.000 0.00 0.00 42.73 2.24
3062 3424 7.659799 GGCCAACCTTAAAACAAAACTAATGAT 59.340 33.333 0.00 0.00 0.00 2.45
3101 3463 7.094420 TGACAAACATTGATACCGTGAATGAAT 60.094 33.333 0.00 0.00 32.47 2.57
3187 3549 5.221263 CCTCGGGTATACATGCCAGTATATC 60.221 48.000 5.01 7.65 38.71 1.63
3212 3574 8.001875 TCTCTCTGTTTATGGATAGAAGCTAGT 58.998 37.037 0.00 0.00 0.00 2.57
3238 3600 5.904362 AAAATTACATCCAGAGCCTGTTC 57.096 39.130 2.18 0.00 0.00 3.18
3240 3602 4.785346 ATTACATCCAGAGCCTGTTCAT 57.215 40.909 2.18 0.00 0.00 2.57
3257 3619 1.922447 TCATGCCCACATACCTCCTTT 59.078 47.619 0.00 0.00 33.67 3.11
3334 3696 4.518970 TCCTTTGGTGCTACTTTGCTAAAG 59.481 41.667 6.98 6.98 44.10 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.038282 GGGTATGTTCCGACAAACCTTTTT 59.962 41.667 0.00 0.00 39.66 1.94
14 15 3.570975 GGGTATGTTCCGACAAACCTTTT 59.429 43.478 0.00 0.00 39.66 2.27
15 16 3.151554 GGGTATGTTCCGACAAACCTTT 58.848 45.455 0.00 0.00 39.66 3.11
16 17 2.106857 TGGGTATGTTCCGACAAACCTT 59.893 45.455 0.00 0.00 39.66 3.50
17 18 1.700739 TGGGTATGTTCCGACAAACCT 59.299 47.619 0.00 0.00 39.66 3.50
18 19 2.188062 TGGGTATGTTCCGACAAACC 57.812 50.000 0.00 0.00 39.66 3.27
19 20 3.404899 TCTTGGGTATGTTCCGACAAAC 58.595 45.455 0.00 0.00 39.66 2.93
20 21 3.558321 CCTCTTGGGTATGTTCCGACAAA 60.558 47.826 0.00 0.00 39.66 2.83
21 22 2.027561 CCTCTTGGGTATGTTCCGACAA 60.028 50.000 0.00 0.00 39.66 3.18
22 23 1.553248 CCTCTTGGGTATGTTCCGACA 59.447 52.381 0.00 0.00 40.71 4.35
23 24 2.311124 CCTCTTGGGTATGTTCCGAC 57.689 55.000 0.00 0.00 0.00 4.79
35 36 2.094100 TCCTAGCAGATCCCTCTTGG 57.906 55.000 0.00 0.00 0.00 3.61
36 37 2.224257 GCTTCCTAGCAGATCCCTCTTG 60.224 54.545 0.00 0.00 46.95 3.02
37 38 2.046292 GCTTCCTAGCAGATCCCTCTT 58.954 52.381 0.00 0.00 46.95 2.85
38 39 1.715785 GCTTCCTAGCAGATCCCTCT 58.284 55.000 0.00 0.00 46.95 3.69
49 50 5.815233 TCTTATCATTGAGGGCTTCCTAG 57.185 43.478 0.00 0.00 41.93 3.02
50 51 5.072329 CCTTCTTATCATTGAGGGCTTCCTA 59.928 44.000 0.00 0.00 41.93 2.94
51 52 4.141298 CCTTCTTATCATTGAGGGCTTCCT 60.141 45.833 0.00 0.00 45.23 3.36
52 53 4.140536 CCTTCTTATCATTGAGGGCTTCC 58.859 47.826 0.00 0.00 0.00 3.46
53 54 4.786425 ACCTTCTTATCATTGAGGGCTTC 58.214 43.478 0.00 0.00 33.40 3.86
54 55 4.870021 ACCTTCTTATCATTGAGGGCTT 57.130 40.909 0.00 0.00 33.40 4.35
55 56 5.430089 ACTTACCTTCTTATCATTGAGGGCT 59.570 40.000 0.00 0.00 33.40 5.19
56 57 5.685728 ACTTACCTTCTTATCATTGAGGGC 58.314 41.667 0.00 0.00 33.40 5.19
57 58 8.651389 TCATACTTACCTTCTTATCATTGAGGG 58.349 37.037 0.00 0.00 35.82 4.30
80 81 6.698008 TGCCGATTCATAATCTGTTTTCAT 57.302 33.333 0.00 0.00 35.73 2.57
83 84 8.169977 ACATATGCCGATTCATAATCTGTTTT 57.830 30.769 1.58 0.00 35.73 2.43
132 133 8.553153 TGATGATGTAAGGAGGGTACAATTTTA 58.447 33.333 0.00 0.00 35.21 1.52
133 134 7.339466 GTGATGATGTAAGGAGGGTACAATTTT 59.661 37.037 0.00 0.00 35.21 1.82
160 161 4.239304 CACACAAAGTTGTATGCATGCAT 58.761 39.130 33.92 33.92 39.91 3.96
200 201 4.793216 CCGTTCGATAGGAAATGCTTTTTG 59.207 41.667 0.00 0.00 36.14 2.44
206 207 1.865340 GGACCGTTCGATAGGAAATGC 59.135 52.381 12.86 0.00 36.14 3.56
217 218 3.515330 ATACTAACAAGGGACCGTTCG 57.485 47.619 0.00 0.00 0.00 3.95
284 285 1.956477 ACAAACATGCCAACTCTCCAC 59.044 47.619 0.00 0.00 0.00 4.02
289 290 2.030805 GGTGAGACAAACATGCCAACTC 60.031 50.000 0.00 0.00 0.00 3.01
296 297 2.566833 TGGGAGGTGAGACAAACATG 57.433 50.000 0.00 0.00 0.00 3.21
302 303 1.305297 AGCGATGGGAGGTGAGACA 60.305 57.895 0.00 0.00 0.00 3.41
303 304 1.040339 AGAGCGATGGGAGGTGAGAC 61.040 60.000 0.00 0.00 0.00 3.36
306 307 1.621992 GATAGAGCGATGGGAGGTGA 58.378 55.000 0.00 0.00 0.00 4.02
340 341 3.047796 GTGTAATGCACGTACGGATAGG 58.952 50.000 21.06 4.60 38.45 2.57
389 392 7.170658 TGGCAGCACTAATCACAAAATTAAAAC 59.829 33.333 0.00 0.00 0.00 2.43
452 458 1.550524 TGTTCCAATAGTGAGCGCTCT 59.449 47.619 35.27 20.62 0.00 4.09
493 499 7.564660 TCCAACTAATCTTGGCCATCAAATTAT 59.435 33.333 6.09 0.00 40.66 1.28
566 573 3.698040 AGAGGCGAGCAAATTGATTCATT 59.302 39.130 0.00 0.00 0.00 2.57
567 574 3.285484 AGAGGCGAGCAAATTGATTCAT 58.715 40.909 0.00 0.00 0.00 2.57
584 591 4.159135 CAGGGAAAAATCAACATGGAGAGG 59.841 45.833 0.00 0.00 0.00 3.69
587 594 3.368739 GGCAGGGAAAAATCAACATGGAG 60.369 47.826 0.00 0.00 0.00 3.86
661 670 5.847304 AGAAGGAAAGGAAAGCACATTTTC 58.153 37.500 0.00 0.00 36.55 2.29
664 673 3.829026 GGAGAAGGAAAGGAAAGCACATT 59.171 43.478 0.00 0.00 0.00 2.71
665 674 3.075134 AGGAGAAGGAAAGGAAAGCACAT 59.925 43.478 0.00 0.00 0.00 3.21
666 675 2.443255 AGGAGAAGGAAAGGAAAGCACA 59.557 45.455 0.00 0.00 0.00 4.57
683 692 3.320541 CAGGGCATGACTTCTAGTAGGAG 59.679 52.174 3.69 3.69 0.00 3.69
737 746 8.902540 TTTATCCGATTGAGTTAATGCAGTAT 57.097 30.769 0.00 0.00 0.00 2.12
780 789 7.818930 GGCAAGAAATTATTGATTTGGTTGAGA 59.181 33.333 4.36 0.00 38.06 3.27
781 790 7.820872 AGGCAAGAAATTATTGATTTGGTTGAG 59.179 33.333 4.36 0.00 38.06 3.02
782 791 7.678837 AGGCAAGAAATTATTGATTTGGTTGA 58.321 30.769 4.36 0.00 38.06 3.18
783 792 7.910441 AGGCAAGAAATTATTGATTTGGTTG 57.090 32.000 4.36 0.00 38.06 3.77
784 793 8.156165 TGAAGGCAAGAAATTATTGATTTGGTT 58.844 29.630 4.36 0.00 38.06 3.67
785 794 7.603784 GTGAAGGCAAGAAATTATTGATTTGGT 59.396 33.333 4.36 0.00 38.06 3.67
786 795 7.201461 CGTGAAGGCAAGAAATTATTGATTTGG 60.201 37.037 4.36 0.00 38.06 3.28
804 820 1.134521 TGGATATGGTCACGTGAAGGC 60.135 52.381 21.95 8.06 0.00 4.35
839 855 8.383175 TGATCTAGTTGAGGTTTGGTAAGATTT 58.617 33.333 0.00 0.00 0.00 2.17
873 889 9.015146 ACTTGAATATAGGTAGGGAAGGAAATT 57.985 33.333 0.00 0.00 0.00 1.82
956 972 0.601558 GAAGGTGAGGCAGACGTACA 59.398 55.000 0.00 0.00 0.00 2.90
962 978 2.061220 CAGTGGAAGGTGAGGCAGA 58.939 57.895 0.00 0.00 0.00 4.26
988 1004 1.064825 AGTCGGAGGGAAATGGTGTT 58.935 50.000 0.00 0.00 0.00 3.32
993 1009 3.126343 CGGTTTTTAGTCGGAGGGAAATG 59.874 47.826 0.00 0.00 0.00 2.32
994 1010 3.008266 TCGGTTTTTAGTCGGAGGGAAAT 59.992 43.478 0.00 0.00 0.00 2.17
1038 1054 5.768752 ACTAAAGTAGGGGAAAAACCAACA 58.231 37.500 0.00 0.00 41.20 3.33
1056 1072 4.018688 GGGGGCCTAGAGAGAAAAACTAAA 60.019 45.833 0.84 0.00 0.00 1.85
1071 1088 2.024983 TTTGCAAACCAGGGGGCCTA 62.025 55.000 8.05 0.00 37.90 3.93
1103 1121 8.704668 AGTAGGAAATGAAAGAAAAACACCATT 58.295 29.630 0.00 0.00 0.00 3.16
1104 1122 8.250143 AGTAGGAAATGAAAGAAAAACACCAT 57.750 30.769 0.00 0.00 0.00 3.55
1120 1139 8.970020 TGCATGTCATGATTTTTAGTAGGAAAT 58.030 29.630 17.24 0.00 0.00 2.17
1131 1150 2.829720 AGCTGGTGCATGTCATGATTTT 59.170 40.909 17.24 0.00 42.74 1.82
1140 1159 2.566833 TTTAGTGAGCTGGTGCATGT 57.433 45.000 0.00 0.00 42.74 3.21
1142 1161 1.815003 GCTTTTAGTGAGCTGGTGCAT 59.185 47.619 0.00 0.00 42.74 3.96
1150 1169 4.917998 GGTTTTGCTAAGCTTTTAGTGAGC 59.082 41.667 3.20 7.02 40.43 4.26
1157 1176 5.754890 CAGTTCATGGTTTTGCTAAGCTTTT 59.245 36.000 3.20 0.00 0.00 2.27
1161 1180 2.989166 GCAGTTCATGGTTTTGCTAAGC 59.011 45.455 0.00 0.00 0.00 3.09
1232 1251 8.985315 ACTAGATGCAAGGAAAATATTGATCA 57.015 30.769 0.00 0.00 0.00 2.92
1464 1483 3.330720 CCAAAGGGAGGGCCGAGT 61.331 66.667 0.00 0.00 35.59 4.18
1496 1515 6.479990 GGGCAATATGAGAAATAAACCAAAGC 59.520 38.462 0.00 0.00 0.00 3.51
1637 1989 9.221933 TCAGAAAAGAAATTAATTGCATTGCAT 57.778 25.926 12.95 0.58 38.76 3.96
1775 2130 1.200483 GATGATACGTCTGTGCACGG 58.800 55.000 20.12 20.12 44.41 4.94
1824 2179 5.627499 TGGCAATACTTCATGTCTTCAAC 57.373 39.130 0.00 0.00 0.00 3.18
1869 2224 1.278985 TGGTGATGAGGCAAGAACGAT 59.721 47.619 0.00 0.00 0.00 3.73
1950 2305 3.941483 GCGAAGATGGATGGAGAGAAAAA 59.059 43.478 0.00 0.00 0.00 1.94
1969 2324 8.415950 AATAAATCCCAAATATACCAATGCGA 57.584 30.769 0.00 0.00 0.00 5.10
1999 2354 5.630061 TGCACAATTGACACGATAAGAATG 58.370 37.500 13.59 0.00 0.00 2.67
2006 2361 1.608109 TGCTTGCACAATTGACACGAT 59.392 42.857 13.59 0.00 0.00 3.73
2007 2362 1.002576 CTGCTTGCACAATTGACACGA 60.003 47.619 13.59 0.00 0.00 4.35
2008 2363 1.401530 CTGCTTGCACAATTGACACG 58.598 50.000 13.59 8.67 0.00 4.49
2173 2532 1.375908 CGGCTTGCAGCAGTAGGAA 60.376 57.895 9.78 0.00 44.75 3.36
2222 2584 2.280592 GTCTCCAAACGGCGTGGT 60.281 61.111 15.70 0.87 37.43 4.16
2312 2674 7.594351 TGATCATGCTACAAGAGTCTCTTAT 57.406 36.000 14.81 6.70 33.78 1.73
2374 2736 8.471302 TGCCCCCTAAATATAACCTACAATAT 57.529 34.615 0.00 0.00 0.00 1.28
2404 2766 1.021202 AAAAGTAAGCGCACACTGCA 58.979 45.000 11.47 0.00 45.36 4.41
2454 2816 6.993308 GGTCTTTCTATTTATGGAAGGAGGTC 59.007 42.308 1.75 0.00 34.88 3.85
2498 2860 0.179073 GCACCAGCTACACGATCCAT 60.179 55.000 0.00 0.00 37.91 3.41
2572 2934 5.021458 ACTAGATACTTTCCCGGAGTGAAA 58.979 41.667 0.73 3.28 0.00 2.69
2573 2935 4.401519 CACTAGATACTTTCCCGGAGTGAA 59.598 45.833 0.73 0.00 36.07 3.18
2574 2936 3.952323 CACTAGATACTTTCCCGGAGTGA 59.048 47.826 0.73 0.00 36.07 3.41
2575 2937 3.491104 GCACTAGATACTTTCCCGGAGTG 60.491 52.174 0.73 5.55 36.88 3.51
2576 2938 2.694109 GCACTAGATACTTTCCCGGAGT 59.306 50.000 0.73 0.00 0.00 3.85
2577 2939 2.959707 AGCACTAGATACTTTCCCGGAG 59.040 50.000 0.73 0.00 0.00 4.63
2578 2940 2.957006 GAGCACTAGATACTTTCCCGGA 59.043 50.000 0.73 0.00 0.00 5.14
2579 2941 2.036089 GGAGCACTAGATACTTTCCCGG 59.964 54.545 0.00 0.00 0.00 5.73
2580 2942 2.036089 GGGAGCACTAGATACTTTCCCG 59.964 54.545 0.00 0.00 34.04 5.14
2581 2943 3.039011 TGGGAGCACTAGATACTTTCCC 58.961 50.000 0.00 4.81 42.49 3.97
2582 2944 3.961408 TCTGGGAGCACTAGATACTTTCC 59.039 47.826 0.00 0.00 0.00 3.13
2583 2945 4.647399 AGTCTGGGAGCACTAGATACTTTC 59.353 45.833 0.00 0.00 0.00 2.62
2584 2946 4.615513 AGTCTGGGAGCACTAGATACTTT 58.384 43.478 0.00 0.00 0.00 2.66
2585 2947 4.258457 AGTCTGGGAGCACTAGATACTT 57.742 45.455 0.00 0.00 0.00 2.24
2586 2948 3.957497 CAAGTCTGGGAGCACTAGATACT 59.043 47.826 0.00 0.00 0.00 2.12
2587 2949 3.068873 CCAAGTCTGGGAGCACTAGATAC 59.931 52.174 0.00 0.00 39.30 2.24
2588 2950 3.300388 CCAAGTCTGGGAGCACTAGATA 58.700 50.000 0.00 0.00 39.30 1.98
2589 2951 2.114616 CCAAGTCTGGGAGCACTAGAT 58.885 52.381 0.00 0.00 39.30 1.98
2590 2952 1.561643 CCAAGTCTGGGAGCACTAGA 58.438 55.000 0.00 0.00 39.30 2.43
2600 2962 2.352805 GGAGCACCCCAAGTCTGG 59.647 66.667 0.00 0.00 43.10 3.86
2611 2973 3.842925 TTTGGAGCACCGGGAGCAC 62.843 63.158 21.10 15.32 39.42 4.40
2612 2974 2.905996 ATTTGGAGCACCGGGAGCA 61.906 57.895 21.10 2.67 39.42 4.26
2613 2975 2.044946 ATTTGGAGCACCGGGAGC 60.045 61.111 6.32 10.14 39.42 4.70
2614 2976 1.002134 ACATTTGGAGCACCGGGAG 60.002 57.895 6.32 0.00 39.42 4.30
2615 2977 1.002624 GACATTTGGAGCACCGGGA 60.003 57.895 6.32 0.00 39.42 5.14
2616 2978 1.002134 AGACATTTGGAGCACCGGG 60.002 57.895 6.32 0.00 39.42 5.73
2617 2979 0.321564 TCAGACATTTGGAGCACCGG 60.322 55.000 0.00 0.00 39.42 5.28
2618 2980 1.522668 TTCAGACATTTGGAGCACCG 58.477 50.000 0.00 0.00 39.42 4.94
2619 2981 4.320608 TTTTTCAGACATTTGGAGCACC 57.679 40.909 0.00 0.00 0.00 5.01
2620 2982 8.538409 AAATATTTTTCAGACATTTGGAGCAC 57.462 30.769 0.00 0.00 0.00 4.40
2621 2983 9.558396 AAAAATATTTTTCAGACATTTGGAGCA 57.442 25.926 18.40 0.00 35.61 4.26
2670 3032 2.557924 TCCGTTGATCTGCTGCATTTTT 59.442 40.909 1.31 0.00 0.00 1.94
2671 3033 2.161855 TCCGTTGATCTGCTGCATTTT 58.838 42.857 1.31 0.00 0.00 1.82
2672 3034 1.825090 TCCGTTGATCTGCTGCATTT 58.175 45.000 1.31 0.00 0.00 2.32
2673 3035 1.470098 GTTCCGTTGATCTGCTGCATT 59.530 47.619 1.31 0.00 0.00 3.56
2674 3036 1.089920 GTTCCGTTGATCTGCTGCAT 58.910 50.000 1.31 0.00 0.00 3.96
2675 3037 0.250252 TGTTCCGTTGATCTGCTGCA 60.250 50.000 0.88 0.88 0.00 4.41
2676 3038 1.063174 GATGTTCCGTTGATCTGCTGC 59.937 52.381 0.00 0.00 0.00 5.25
2677 3039 1.325640 CGATGTTCCGTTGATCTGCTG 59.674 52.381 0.00 0.00 0.00 4.41
2678 3040 1.204704 TCGATGTTCCGTTGATCTGCT 59.795 47.619 0.00 0.00 0.00 4.24
2679 3041 1.640428 TCGATGTTCCGTTGATCTGC 58.360 50.000 0.00 0.00 0.00 4.26
2680 3042 3.190079 ACATCGATGTTCCGTTGATCTG 58.810 45.455 25.18 0.00 37.90 2.90
2681 3043 3.131223 AGACATCGATGTTCCGTTGATCT 59.869 43.478 30.46 16.93 41.95 2.75
2682 3044 3.448686 AGACATCGATGTTCCGTTGATC 58.551 45.455 30.46 15.02 41.95 2.92
2683 3045 3.131223 AGAGACATCGATGTTCCGTTGAT 59.869 43.478 30.46 5.77 41.95 2.57
2684 3046 2.492088 AGAGACATCGATGTTCCGTTGA 59.508 45.455 30.46 0.00 41.95 3.18
2685 3047 2.881074 AGAGACATCGATGTTCCGTTG 58.119 47.619 30.46 4.58 41.95 4.10
2686 3048 3.254060 CAAGAGACATCGATGTTCCGTT 58.746 45.455 30.46 18.44 41.95 4.44
2687 3049 2.231478 ACAAGAGACATCGATGTTCCGT 59.769 45.455 30.46 22.32 41.95 4.69
2688 3050 2.854777 GACAAGAGACATCGATGTTCCG 59.145 50.000 30.46 21.82 41.95 4.30
2689 3051 3.614616 GTGACAAGAGACATCGATGTTCC 59.385 47.826 30.46 23.29 41.95 3.62
2690 3052 4.237724 TGTGACAAGAGACATCGATGTTC 58.762 43.478 30.46 25.63 41.95 3.18
2691 3053 4.257267 TGTGACAAGAGACATCGATGTT 57.743 40.909 30.46 20.01 41.95 2.71
2692 3054 3.942130 TGTGACAAGAGACATCGATGT 57.058 42.857 30.37 30.37 45.16 3.06
2693 3055 5.596268 TTTTGTGACAAGAGACATCGATG 57.404 39.130 23.68 23.68 0.00 3.84
2694 3056 6.808008 AATTTTGTGACAAGAGACATCGAT 57.192 33.333 0.00 0.00 0.00 3.59
2695 3057 6.259829 TGAAATTTTGTGACAAGAGACATCGA 59.740 34.615 0.00 0.00 0.00 3.59
2696 3058 6.429624 TGAAATTTTGTGACAAGAGACATCG 58.570 36.000 0.00 0.00 0.00 3.84
2697 3059 8.633075 TTTGAAATTTTGTGACAAGAGACATC 57.367 30.769 0.00 0.00 0.00 3.06
2698 3060 9.252962 GATTTGAAATTTTGTGACAAGAGACAT 57.747 29.630 0.00 0.00 0.00 3.06
2699 3061 8.249638 TGATTTGAAATTTTGTGACAAGAGACA 58.750 29.630 0.00 0.00 0.00 3.41
2700 3062 8.633075 TGATTTGAAATTTTGTGACAAGAGAC 57.367 30.769 0.00 0.00 0.00 3.36
2701 3063 9.650539 TTTGATTTGAAATTTTGTGACAAGAGA 57.349 25.926 0.00 0.00 0.00 3.10
2706 3068 9.699985 CGAATTTTGATTTGAAATTTTGTGACA 57.300 25.926 0.00 0.00 36.96 3.58
2707 3069 9.913451 TCGAATTTTGATTTGAAATTTTGTGAC 57.087 25.926 0.00 0.00 36.96 3.67
2715 3077 9.384682 GCAATGTTTCGAATTTTGATTTGAAAT 57.615 25.926 14.33 0.00 42.52 2.17
2716 3078 8.610896 AGCAATGTTTCGAATTTTGATTTGAAA 58.389 25.926 15.39 9.40 40.00 2.69
2717 3079 8.140677 AGCAATGTTTCGAATTTTGATTTGAA 57.859 26.923 15.39 0.00 33.42 2.69
2718 3080 7.358270 CGAGCAATGTTTCGAATTTTGATTTGA 60.358 33.333 15.39 0.00 39.06 2.69
2719 3081 6.728854 CGAGCAATGTTTCGAATTTTGATTTG 59.271 34.615 15.39 7.74 39.06 2.32
2720 3082 6.640499 TCGAGCAATGTTTCGAATTTTGATTT 59.360 30.769 15.39 4.36 42.27 2.17
2721 3083 6.148948 TCGAGCAATGTTTCGAATTTTGATT 58.851 32.000 15.39 6.14 42.27 2.57
2722 3084 5.698832 TCGAGCAATGTTTCGAATTTTGAT 58.301 33.333 15.39 10.93 42.27 2.57
2723 3085 5.049749 TCTCGAGCAATGTTTCGAATTTTGA 60.050 36.000 7.81 4.60 44.25 2.69
2724 3086 5.146460 TCTCGAGCAATGTTTCGAATTTTG 58.854 37.500 7.81 4.87 44.25 2.44
2725 3087 5.356882 TCTCGAGCAATGTTTCGAATTTT 57.643 34.783 7.81 0.00 44.25 1.82
2726 3088 5.551760 ATCTCGAGCAATGTTTCGAATTT 57.448 34.783 7.81 0.00 44.25 1.82
2727 3089 5.580691 TGTATCTCGAGCAATGTTTCGAATT 59.419 36.000 7.81 6.31 44.25 2.17
2728 3090 5.109210 TGTATCTCGAGCAATGTTTCGAAT 58.891 37.500 7.81 10.43 44.25 3.34
2729 3091 4.490743 TGTATCTCGAGCAATGTTTCGAA 58.509 39.130 7.81 0.00 44.25 3.71
2730 3092 4.104696 TGTATCTCGAGCAATGTTTCGA 57.895 40.909 7.81 10.47 42.91 3.71
2731 3093 4.840401 TTGTATCTCGAGCAATGTTTCG 57.160 40.909 7.81 3.56 38.13 3.46
2732 3094 7.750458 TCAATTTTGTATCTCGAGCAATGTTTC 59.250 33.333 7.81 0.00 0.00 2.78
2733 3095 7.538678 GTCAATTTTGTATCTCGAGCAATGTTT 59.461 33.333 7.81 0.00 0.00 2.83
2734 3096 7.023575 GTCAATTTTGTATCTCGAGCAATGTT 58.976 34.615 7.81 2.36 0.00 2.71
2735 3097 6.149308 TGTCAATTTTGTATCTCGAGCAATGT 59.851 34.615 7.81 0.00 0.00 2.71
2736 3098 6.545508 TGTCAATTTTGTATCTCGAGCAATG 58.454 36.000 7.81 2.69 0.00 2.82
2737 3099 6.741992 TGTCAATTTTGTATCTCGAGCAAT 57.258 33.333 7.81 0.00 0.00 3.56
2738 3100 6.426633 TCTTGTCAATTTTGTATCTCGAGCAA 59.573 34.615 7.81 3.53 0.00 3.91
2739 3101 5.931724 TCTTGTCAATTTTGTATCTCGAGCA 59.068 36.000 7.81 0.00 0.00 4.26
2740 3102 6.311445 TCTCTTGTCAATTTTGTATCTCGAGC 59.689 38.462 7.81 0.00 0.00 5.03
2741 3103 7.329471 TGTCTCTTGTCAATTTTGTATCTCGAG 59.671 37.037 5.93 5.93 0.00 4.04
2742 3104 7.151976 TGTCTCTTGTCAATTTTGTATCTCGA 58.848 34.615 0.00 0.00 0.00 4.04
2743 3105 7.351414 TGTCTCTTGTCAATTTTGTATCTCG 57.649 36.000 0.00 0.00 0.00 4.04
2744 3106 8.113062 CGATGTCTCTTGTCAATTTTGTATCTC 58.887 37.037 0.00 0.00 0.00 2.75
2745 3107 7.819415 TCGATGTCTCTTGTCAATTTTGTATCT 59.181 33.333 0.00 0.00 0.00 1.98
2746 3108 7.963981 TCGATGTCTCTTGTCAATTTTGTATC 58.036 34.615 0.00 0.00 0.00 2.24
2747 3109 7.905604 TCGATGTCTCTTGTCAATTTTGTAT 57.094 32.000 0.00 0.00 0.00 2.29
2748 3110 7.387673 ACATCGATGTCTCTTGTCAATTTTGTA 59.612 33.333 25.18 0.00 35.87 2.41
2749 3111 6.205464 ACATCGATGTCTCTTGTCAATTTTGT 59.795 34.615 25.18 0.00 35.87 2.83
2750 3112 6.605849 ACATCGATGTCTCTTGTCAATTTTG 58.394 36.000 25.18 0.00 35.87 2.44
2751 3113 6.808008 ACATCGATGTCTCTTGTCAATTTT 57.192 33.333 25.18 0.00 35.87 1.82
2752 3114 6.128172 GGAACATCGATGTCTCTTGTCAATTT 60.128 38.462 30.06 10.69 40.80 1.82
2753 3115 5.352569 GGAACATCGATGTCTCTTGTCAATT 59.647 40.000 30.06 10.90 40.80 2.32
2754 3116 4.872691 GGAACATCGATGTCTCTTGTCAAT 59.127 41.667 30.06 11.43 40.80 2.57
2755 3117 4.245660 GGAACATCGATGTCTCTTGTCAA 58.754 43.478 30.06 0.00 40.80 3.18
2756 3118 3.673323 CGGAACATCGATGTCTCTTGTCA 60.673 47.826 30.06 0.00 40.80 3.58
2757 3119 2.854777 CGGAACATCGATGTCTCTTGTC 59.145 50.000 30.06 21.40 40.80 3.18
2758 3120 2.231478 ACGGAACATCGATGTCTCTTGT 59.769 45.455 30.06 23.30 40.80 3.16
2759 3121 2.854777 GACGGAACATCGATGTCTCTTG 59.145 50.000 30.06 22.82 40.80 3.02
2760 3122 3.152261 GACGGAACATCGATGTCTCTT 57.848 47.619 30.06 15.59 40.80 2.85
2761 3123 2.853731 GACGGAACATCGATGTCTCT 57.146 50.000 30.06 15.98 40.80 3.10
2820 3182 5.234116 GTGCTCCGATGTGAAAAACATTTTT 59.766 36.000 2.00 2.00 44.51 1.94
2821 3183 4.744631 GTGCTCCGATGTGAAAAACATTTT 59.255 37.500 0.00 0.00 44.51 1.82
2822 3184 4.298332 GTGCTCCGATGTGAAAAACATTT 58.702 39.130 0.00 0.00 44.51 2.32
2823 3185 3.305335 GGTGCTCCGATGTGAAAAACATT 60.305 43.478 0.00 0.00 44.51 2.71
2824 3186 2.228822 GGTGCTCCGATGTGAAAAACAT 59.771 45.455 0.00 0.00 44.51 2.71
2825 3187 1.606668 GGTGCTCCGATGTGAAAAACA 59.393 47.619 0.00 0.00 44.79 2.83
2826 3188 2.331809 GGTGCTCCGATGTGAAAAAC 57.668 50.000 0.00 0.00 0.00 2.43
2847 3209 3.483869 CCAGGCCTAGGGTGCTCC 61.484 72.222 3.98 2.20 0.00 4.70
2848 3210 3.483869 CCCAGGCCTAGGGTGCTC 61.484 72.222 24.72 0.00 41.61 4.26
2849 3211 4.024984 TCCCAGGCCTAGGGTGCT 62.025 66.667 28.97 0.00 46.82 4.40
2850 3212 3.483869 CTCCCAGGCCTAGGGTGC 61.484 72.222 28.97 0.00 46.82 5.01
2851 3213 2.770048 CCTCCCAGGCCTAGGGTG 60.770 72.222 28.97 26.61 46.82 4.61
2852 3214 2.958739 TCCTCCCAGGCCTAGGGT 60.959 66.667 28.97 0.00 46.82 4.34
2854 3216 0.470268 GTAGTCCTCCCAGGCCTAGG 60.470 65.000 11.64 11.64 34.61 3.02
2855 3217 0.261991 TGTAGTCCTCCCAGGCCTAG 59.738 60.000 3.98 0.00 34.61 3.02
2856 3218 0.941963 ATGTAGTCCTCCCAGGCCTA 59.058 55.000 3.98 0.00 34.61 3.93
2857 3219 0.941963 TATGTAGTCCTCCCAGGCCT 59.058 55.000 0.00 0.00 34.61 5.19
2858 3220 1.049402 GTATGTAGTCCTCCCAGGCC 58.951 60.000 0.00 0.00 34.61 5.19
2859 3221 2.089600 AGTATGTAGTCCTCCCAGGC 57.910 55.000 0.00 0.00 34.61 4.85
2860 3222 3.388350 GGAAAGTATGTAGTCCTCCCAGG 59.612 52.174 0.00 0.00 36.46 4.45
2861 3223 3.388350 GGGAAAGTATGTAGTCCTCCCAG 59.612 52.174 0.00 0.00 40.72 4.45
2862 3224 3.381335 GGGAAAGTATGTAGTCCTCCCA 58.619 50.000 0.00 0.00 40.72 4.37
2863 3225 2.704596 GGGGAAAGTATGTAGTCCTCCC 59.295 54.545 0.00 0.00 40.37 4.30
2864 3226 3.655384 AGGGGAAAGTATGTAGTCCTCC 58.345 50.000 0.00 0.00 30.17 4.30
2865 3227 5.189145 TGAAAGGGGAAAGTATGTAGTCCTC 59.811 44.000 0.00 0.00 0.00 3.71
2866 3228 5.045797 GTGAAAGGGGAAAGTATGTAGTCCT 60.046 44.000 0.00 0.00 0.00 3.85
2867 3229 5.045797 AGTGAAAGGGGAAAGTATGTAGTCC 60.046 44.000 0.00 0.00 0.00 3.85
2868 3230 6.051179 AGTGAAAGGGGAAAGTATGTAGTC 57.949 41.667 0.00 0.00 0.00 2.59
2869 3231 5.045797 GGAGTGAAAGGGGAAAGTATGTAGT 60.046 44.000 0.00 0.00 0.00 2.73
2870 3232 5.045869 TGGAGTGAAAGGGGAAAGTATGTAG 60.046 44.000 0.00 0.00 0.00 2.74
2871 3233 4.847512 TGGAGTGAAAGGGGAAAGTATGTA 59.152 41.667 0.00 0.00 0.00 2.29
2872 3234 3.655777 TGGAGTGAAAGGGGAAAGTATGT 59.344 43.478 0.00 0.00 0.00 2.29
2873 3235 4.010349 GTGGAGTGAAAGGGGAAAGTATG 58.990 47.826 0.00 0.00 0.00 2.39
2874 3236 3.010250 GGTGGAGTGAAAGGGGAAAGTAT 59.990 47.826 0.00 0.00 0.00 2.12
2875 3237 2.374170 GGTGGAGTGAAAGGGGAAAGTA 59.626 50.000 0.00 0.00 0.00 2.24
2876 3238 1.145119 GGTGGAGTGAAAGGGGAAAGT 59.855 52.381 0.00 0.00 0.00 2.66
2877 3239 1.425448 AGGTGGAGTGAAAGGGGAAAG 59.575 52.381 0.00 0.00 0.00 2.62
2878 3240 1.529744 AGGTGGAGTGAAAGGGGAAA 58.470 50.000 0.00 0.00 0.00 3.13
2879 3241 1.529744 AAGGTGGAGTGAAAGGGGAA 58.470 50.000 0.00 0.00 0.00 3.97
2880 3242 1.529744 AAAGGTGGAGTGAAAGGGGA 58.470 50.000 0.00 0.00 0.00 4.81
2881 3243 1.963515 CAAAAGGTGGAGTGAAAGGGG 59.036 52.381 0.00 0.00 0.00 4.79
2882 3244 1.341209 GCAAAAGGTGGAGTGAAAGGG 59.659 52.381 0.00 0.00 0.00 3.95
2883 3245 1.001378 CGCAAAAGGTGGAGTGAAAGG 60.001 52.381 0.00 0.00 0.00 3.11
2915 3277 7.094975 TGGTGGAAATGATACGAAAAGTAAGTG 60.095 37.037 0.00 0.00 39.04 3.16
2916 3278 6.938030 TGGTGGAAATGATACGAAAAGTAAGT 59.062 34.615 0.00 0.00 39.04 2.24
2940 3302 7.116819 GCTTAACTTTCAAAAACGGTCATTTG 58.883 34.615 11.16 11.16 37.77 2.32
2949 3311 4.693283 AGGGCTGCTTAACTTTCAAAAAC 58.307 39.130 0.00 0.00 0.00 2.43
3003 3365 0.391228 TGTCCTTGCTACGCAACTCA 59.609 50.000 0.00 0.00 43.99 3.41
3187 3549 8.081633 CACTAGCTTCTATCCATAAACAGAGAG 58.918 40.741 0.00 0.00 0.00 3.20
3212 3574 6.245408 ACAGGCTCTGGATGTAATTTTAACA 58.755 36.000 7.06 0.00 35.51 2.41
3238 3600 2.442236 AAAGGAGGTATGTGGGCATG 57.558 50.000 0.00 0.00 36.58 4.06
3240 3602 3.589735 TCTTTAAAGGAGGTATGTGGGCA 59.410 43.478 15.13 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.