Multiple sequence alignment - TraesCS6A01G335000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G335000 chr6A 100.000 3500 0 0 1 3500 565568536 565572035 0.000000e+00 6464.0
1 TraesCS6A01G335000 chr6A 82.826 1019 168 4 1230 2247 557554489 557555501 0.000000e+00 905.0
2 TraesCS6A01G335000 chr6A 85.893 319 16 14 2699 2989 148072930 148073247 2.620000e-81 313.0
3 TraesCS6A01G335000 chr6A 85.266 319 17 14 2699 2989 148061121 148061437 5.680000e-78 302.0
4 TraesCS6A01G335000 chr6A 88.742 151 15 2 3350 3500 148061529 148061677 2.150000e-42 183.0
5 TraesCS6A01G335000 chr6B 95.655 1358 55 1 917 2274 637155851 637157204 0.000000e+00 2178.0
6 TraesCS6A01G335000 chr6B 94.821 251 12 1 2271 2521 637157240 637157489 1.180000e-104 390.0
7 TraesCS6A01G335000 chr6B 89.604 202 17 3 2989 3187 8641851 8642051 1.610000e-63 254.0
8 TraesCS6A01G335000 chr6B 96.512 86 3 0 2513 2598 637178413 637178498 3.640000e-30 143.0
9 TraesCS6A01G335000 chr6D 95.929 1302 48 2 973 2274 422294721 422293425 0.000000e+00 2106.0
10 TraesCS6A01G335000 chr6D 93.040 977 67 1 1298 2274 423238893 423237918 0.000000e+00 1426.0
11 TraesCS6A01G335000 chr6D 94.154 325 18 1 2274 2598 422293386 422293063 8.730000e-136 494.0
12 TraesCS6A01G335000 chr6D 83.908 522 73 8 1287 1804 412157314 412157828 4.060000e-134 488.0
13 TraesCS6A01G335000 chr6D 86.031 451 60 3 1802 2250 412175477 412175926 6.790000e-132 481.0
14 TraesCS6A01G335000 chr6D 93.727 271 13 2 957 1227 423239160 423238894 1.510000e-108 403.0
15 TraesCS6A01G335000 chr6D 88.535 314 28 2 3187 3500 6843925 6844230 1.190000e-99 374.0
16 TraesCS6A01G335000 chr6D 93.500 200 7 3 2699 2892 6843675 6843874 3.420000e-75 292.0
17 TraesCS6A01G335000 chr6D 91.919 198 14 2 2990 3186 256572303 256572499 3.440000e-70 276.0
18 TraesCS6A01G335000 chr6D 91.192 193 15 2 2981 3172 21819531 21819340 9.640000e-66 261.0
19 TraesCS6A01G335000 chr6D 91.579 190 12 4 2985 3172 232770558 232770745 3.470000e-65 259.0
20 TraesCS6A01G335000 chr6D 91.818 110 5 3 2467 2576 423219241 423219136 2.180000e-32 150.0
21 TraesCS6A01G335000 chr6D 97.917 48 1 0 933 980 422295414 422295367 2.240000e-12 84.2
22 TraesCS6A01G335000 chr6D 100.000 30 0 0 916 945 422947438 422947467 4.880000e-04 56.5
23 TraesCS6A01G335000 chr2A 93.862 782 41 5 54 829 72393530 72394310 0.000000e+00 1171.0
24 TraesCS6A01G335000 chr2A 88.291 316 24 7 3187 3500 278925059 278924755 1.990000e-97 366.0
25 TraesCS6A01G335000 chr2A 84.691 307 15 11 2715 2989 278925356 278925050 9.570000e-71 278.0
26 TraesCS6A01G335000 chr2A 88.832 197 15 1 3187 3383 757814962 757815151 5.840000e-58 235.0
27 TraesCS6A01G335000 chr2A 93.151 73 3 2 847 919 72394294 72394364 4.780000e-19 106.0
28 TraesCS6A01G335000 chr2A 77.358 159 26 9 324 479 47593491 47593340 6.220000e-13 86.1
29 TraesCS6A01G335000 chr7A 94.014 284 11 3 2711 2989 496882716 496882998 3.230000e-115 425.0
30 TraesCS6A01G335000 chr7A 92.568 296 13 5 2699 2989 496835468 496835177 1.940000e-112 416.0
31 TraesCS6A01G335000 chr7A 88.995 209 16 6 2786 2989 496886020 496886226 5.800000e-63 252.0
32 TraesCS6A01G335000 chr7A 88.152 211 15 2 3187 3392 496883048 496883253 3.490000e-60 243.0
33 TraesCS6A01G335000 chr2D 88.854 314 27 2 3187 3500 66439240 66438935 2.550000e-101 379.0
34 TraesCS6A01G335000 chr2D 91.500 200 12 4 2990 3186 585500958 585500761 1.600000e-68 270.0
35 TraesCS6A01G335000 chr2D 90.355 197 16 3 2977 3172 384752966 384752772 4.480000e-64 255.0
36 TraesCS6A01G335000 chr3A 88.535 314 27 3 3187 3500 593035414 593035110 4.270000e-99 372.0
37 TraesCS6A01G335000 chr3A 84.409 186 15 11 3187 3366 353165780 353165957 1.670000e-38 171.0
38 TraesCS6A01G335000 chr4B 88.026 309 30 4 3187 3495 1755339 1755640 3.320000e-95 359.0
39 TraesCS6A01G335000 chrUn 86.780 295 13 7 2715 2983 350820185 350820479 4.390000e-79 305.0
40 TraesCS6A01G335000 chrUn 86.780 295 13 7 2715 2983 350842905 350843199 4.390000e-79 305.0
41 TraesCS6A01G335000 chr1D 92.574 202 14 1 2990 3190 379491449 379491650 4.420000e-74 289.0
42 TraesCS6A01G335000 chr1D 90.066 151 13 2 3350 3500 58118921 58118773 9.910000e-46 195.0
43 TraesCS6A01G335000 chr7D 92.424 198 14 1 2990 3186 613505329 613505526 7.400000e-72 281.0
44 TraesCS6A01G335000 chr7D 91.457 199 14 3 2990 3186 210122396 210122199 1.600000e-68 270.0
45 TraesCS6A01G335000 chr5A 83.077 260 32 6 3188 3443 658502713 658502964 3.520000e-55 226.0
46 TraesCS6A01G335000 chr5A 80.608 263 34 11 567 826 482721173 482721421 1.660000e-43 187.0
47 TraesCS6A01G335000 chr1B 85.294 170 24 1 3331 3500 306204897 306204729 1.290000e-39 174.0
48 TraesCS6A01G335000 chr3B 79.444 180 24 12 304 479 754206890 754206720 7.940000e-22 115.0
49 TraesCS6A01G335000 chr5B 90.000 70 5 2 710 779 339285368 339285301 4.810000e-14 89.8
50 TraesCS6A01G335000 chr1A 78.873 142 20 9 341 479 513704663 513704529 1.730000e-13 87.9
51 TraesCS6A01G335000 chr3D 86.486 74 7 3 707 778 23091537 23091609 1.040000e-10 78.7
52 TraesCS6A01G335000 chr4D 94.737 38 2 0 2647 2684 433592529 433592492 3.770000e-05 60.2
53 TraesCS6A01G335000 chr4D 92.500 40 3 0 2648 2687 81169062 81169023 1.360000e-04 58.4
54 TraesCS6A01G335000 chr4A 90.909 44 2 2 2637 2680 547012952 547012911 1.360000e-04 58.4
55 TraesCS6A01G335000 chr4A 96.875 32 0 1 2653 2683 84356170 84356139 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G335000 chr6A 565568536 565572035 3499 False 6464.000000 6464 100.0000 1 3500 1 chr6A.!!$F3 3499
1 TraesCS6A01G335000 chr6A 557554489 557555501 1012 False 905.000000 905 82.8260 1230 2247 1 chr6A.!!$F2 1017
2 TraesCS6A01G335000 chr6A 148061121 148061677 556 False 242.500000 302 87.0040 2699 3500 2 chr6A.!!$F4 801
3 TraesCS6A01G335000 chr6B 637155851 637157489 1638 False 1284.000000 2178 95.2380 917 2521 2 chr6B.!!$F3 1604
4 TraesCS6A01G335000 chr6D 423237918 423239160 1242 True 914.500000 1426 93.3835 957 2274 2 chr6D.!!$R4 1317
5 TraesCS6A01G335000 chr6D 422293063 422295414 2351 True 894.733333 2106 96.0000 933 2598 3 chr6D.!!$R3 1665
6 TraesCS6A01G335000 chr6D 412157314 412157828 514 False 488.000000 488 83.9080 1287 1804 1 chr6D.!!$F3 517
7 TraesCS6A01G335000 chr6D 6843675 6844230 555 False 333.000000 374 91.0175 2699 3500 2 chr6D.!!$F6 801
8 TraesCS6A01G335000 chr2A 72393530 72394364 834 False 638.500000 1171 93.5065 54 919 2 chr2A.!!$F2 865
9 TraesCS6A01G335000 chr2A 278924755 278925356 601 True 322.000000 366 86.4910 2715 3500 2 chr2A.!!$R2 785
10 TraesCS6A01G335000 chr7A 496882716 496886226 3510 False 306.666667 425 90.3870 2711 3392 3 chr7A.!!$F1 681

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
145 146 0.098728 CCCGAAATGCCAGCGTAAAG 59.901 55.0 0.00 0.0 0.00 1.85 F
808 815 0.234884 AGAAGTAAGTTTGCACGCGC 59.765 50.0 5.73 0.0 39.24 6.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1296 1957 1.071987 GGACGGGGTCGGAAAAACT 59.928 57.895 0.00 0.0 41.39 2.66 R
2654 3355 0.096802 TTGCAACGCACGAGCATATG 59.903 50.000 13.57 0.0 38.71 1.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.636282 AGCCCACGTCAAAATAACAAC 57.364 42.857 0.00 0.00 0.00 3.32
22 23 2.031508 AGCCCACGTCAAAATAACAACG 60.032 45.455 0.00 0.00 40.77 4.10
24 25 3.059051 GCCCACGTCAAAATAACAACGTA 60.059 43.478 0.00 0.00 45.67 3.57
25 26 4.378666 GCCCACGTCAAAATAACAACGTAT 60.379 41.667 0.00 0.00 45.67 3.06
26 27 5.318349 CCCACGTCAAAATAACAACGTATC 58.682 41.667 0.00 0.00 45.67 2.24
27 28 5.318349 CCACGTCAAAATAACAACGTATCC 58.682 41.667 0.00 0.00 45.67 2.59
28 29 5.121142 CCACGTCAAAATAACAACGTATCCT 59.879 40.000 0.00 0.00 45.67 3.24
29 30 6.238508 CACGTCAAAATAACAACGTATCCTC 58.761 40.000 0.00 0.00 45.67 3.71
30 31 5.927689 ACGTCAAAATAACAACGTATCCTCA 59.072 36.000 0.00 0.00 45.59 3.86
31 32 6.592607 ACGTCAAAATAACAACGTATCCTCAT 59.407 34.615 0.00 0.00 45.59 2.90
32 33 7.118680 ACGTCAAAATAACAACGTATCCTCATT 59.881 33.333 0.00 0.00 45.59 2.57
33 34 7.960738 CGTCAAAATAACAACGTATCCTCATTT 59.039 33.333 0.00 0.00 0.00 2.32
34 35 9.061610 GTCAAAATAACAACGTATCCTCATTTG 57.938 33.333 0.00 0.00 0.00 2.32
35 36 9.004717 TCAAAATAACAACGTATCCTCATTTGA 57.995 29.630 0.00 0.00 31.66 2.69
36 37 9.061610 CAAAATAACAACGTATCCTCATTTGAC 57.938 33.333 0.00 0.00 0.00 3.18
37 38 7.915293 AATAACAACGTATCCTCATTTGACA 57.085 32.000 0.00 0.00 0.00 3.58
38 39 8.506168 AATAACAACGTATCCTCATTTGACAT 57.494 30.769 0.00 0.00 0.00 3.06
39 40 5.801350 ACAACGTATCCTCATTTGACATG 57.199 39.130 0.00 0.00 0.00 3.21
40 41 4.635765 ACAACGTATCCTCATTTGACATGG 59.364 41.667 0.00 0.00 0.00 3.66
41 42 3.808728 ACGTATCCTCATTTGACATGGG 58.191 45.455 0.00 0.00 0.00 4.00
42 43 3.141398 CGTATCCTCATTTGACATGGGG 58.859 50.000 0.00 0.00 41.03 4.96
43 44 2.077687 ATCCTCATTTGACATGGGGC 57.922 50.000 0.00 0.00 39.51 5.80
44 45 1.002069 TCCTCATTTGACATGGGGCT 58.998 50.000 0.00 0.00 39.51 5.19
45 46 1.108776 CCTCATTTGACATGGGGCTG 58.891 55.000 0.00 0.00 32.16 4.85
46 47 1.341285 CCTCATTTGACATGGGGCTGA 60.341 52.381 0.00 0.00 32.16 4.26
47 48 2.449464 CTCATTTGACATGGGGCTGAA 58.551 47.619 0.00 0.00 0.00 3.02
48 49 2.426024 CTCATTTGACATGGGGCTGAAG 59.574 50.000 0.00 0.00 0.00 3.02
49 50 1.134907 CATTTGACATGGGGCTGAAGC 60.135 52.381 0.00 0.00 41.14 3.86
50 51 0.178967 TTTGACATGGGGCTGAAGCA 60.179 50.000 4.43 0.00 44.36 3.91
51 52 0.609957 TTGACATGGGGCTGAAGCAG 60.610 55.000 4.43 0.00 44.36 4.24
52 53 1.751927 GACATGGGGCTGAAGCAGG 60.752 63.158 4.43 0.00 44.36 4.85
58 59 1.220477 GGGCTGAAGCAGGAGACTC 59.780 63.158 4.43 0.00 44.36 3.36
77 78 1.066502 TCGATTTTCTCCCATGCACGA 60.067 47.619 0.00 0.00 0.00 4.35
145 146 0.098728 CCCGAAATGCCAGCGTAAAG 59.901 55.000 0.00 0.00 0.00 1.85
174 175 1.654220 CTTTCCCACGGCACTGTTG 59.346 57.895 0.00 0.00 0.00 3.33
186 187 3.616560 CGGCACTGTTGGAGTACAATACT 60.617 47.826 0.00 0.00 41.95 2.12
195 196 9.383519 CTGTTGGAGTACAATACTTGACATATT 57.616 33.333 0.00 0.00 41.95 1.28
240 241 4.102524 TGTGGGTCAGCATTAATAGGGTAG 59.897 45.833 0.00 0.00 0.00 3.18
244 245 4.040461 GGTCAGCATTAATAGGGTAGCAGA 59.960 45.833 0.00 0.00 0.00 4.26
249 250 7.038659 CAGCATTAATAGGGTAGCAGAGATAC 58.961 42.308 0.00 0.00 0.00 2.24
281 282 2.166254 CCAGCAACACAAAAGTCACCTT 59.834 45.455 0.00 0.00 0.00 3.50
302 303 2.548480 TCCTCTACACATCGAGTATGCG 59.452 50.000 0.00 0.00 39.39 4.73
331 332 4.289672 GGATCCTCTATTCCCCATTGCTTA 59.710 45.833 3.84 0.00 0.00 3.09
336 337 5.296151 TCTATTCCCCATTGCTTACAGAG 57.704 43.478 0.00 0.00 0.00 3.35
337 338 2.806945 TTCCCCATTGCTTACAGAGG 57.193 50.000 0.00 0.00 0.00 3.69
429 430 5.957910 ATAATCGCTATGCTTTCTATCGC 57.042 39.130 0.00 0.00 0.00 4.58
493 494 5.986741 TCTCTACTGCAATTACGTCAAACAA 59.013 36.000 0.00 0.00 0.00 2.83
541 542 4.018324 TCTTCTTAGACCCAGTCTCTGCTA 60.018 45.833 0.00 0.00 42.40 3.49
559 560 2.615493 GCTACAAGCCTGCAACCTAAGA 60.615 50.000 0.00 0.00 34.48 2.10
590 591 7.387673 TCAACAGATGATTCTTCGTACAAACAT 59.612 33.333 0.00 0.00 31.50 2.71
600 601 8.858003 TTCTTCGTACAAACATGCAAAATTAA 57.142 26.923 0.00 0.00 0.00 1.40
625 630 4.022603 TGGAGAAGAGAAGGTGATGAGAG 58.977 47.826 0.00 0.00 0.00 3.20
659 664 2.405172 GAACGGGAGAAACAGTGAGAC 58.595 52.381 0.00 0.00 0.00 3.36
664 669 3.248602 CGGGAGAAACAGTGAGACTTTTG 59.751 47.826 0.00 0.00 0.00 2.44
675 680 5.694006 CAGTGAGACTTTTGGTACAGAGAAG 59.306 44.000 0.00 0.00 42.39 2.85
678 683 6.422400 GTGAGACTTTTGGTACAGAGAAGAAG 59.578 42.308 0.00 0.00 42.39 2.85
758 764 8.983789 TGACATTGATACGGGCCTATATTAATA 58.016 33.333 0.84 0.00 0.00 0.98
804 811 9.329913 CATGTATACAAAGAAGTAAGTTTGCAC 57.670 33.333 10.14 0.00 37.19 4.57
808 815 0.234884 AGAAGTAAGTTTGCACGCGC 59.765 50.000 5.73 0.00 39.24 6.86
811 818 0.878523 AGTAAGTTTGCACGCGCTCA 60.879 50.000 5.73 0.12 39.64 4.26
826 833 2.542824 GCGCTCAGATCTCCAACTAGAC 60.543 54.545 0.00 0.00 0.00 2.59
827 834 2.034053 CGCTCAGATCTCCAACTAGACC 59.966 54.545 0.00 0.00 0.00 3.85
828 835 3.027412 GCTCAGATCTCCAACTAGACCA 58.973 50.000 0.00 0.00 0.00 4.02
829 836 3.181480 GCTCAGATCTCCAACTAGACCAC 60.181 52.174 0.00 0.00 0.00 4.16
830 837 3.366396 TCAGATCTCCAACTAGACCACC 58.634 50.000 0.00 0.00 0.00 4.61
831 838 2.432510 CAGATCTCCAACTAGACCACCC 59.567 54.545 0.00 0.00 0.00 4.61
832 839 1.763545 GATCTCCAACTAGACCACCCC 59.236 57.143 0.00 0.00 0.00 4.95
833 840 0.790993 TCTCCAACTAGACCACCCCT 59.209 55.000 0.00 0.00 0.00 4.79
834 841 1.196012 CTCCAACTAGACCACCCCTC 58.804 60.000 0.00 0.00 0.00 4.30
835 842 0.490017 TCCAACTAGACCACCCCTCA 59.510 55.000 0.00 0.00 0.00 3.86
836 843 1.132657 TCCAACTAGACCACCCCTCAA 60.133 52.381 0.00 0.00 0.00 3.02
837 844 1.702957 CCAACTAGACCACCCCTCAAA 59.297 52.381 0.00 0.00 0.00 2.69
838 845 2.107552 CCAACTAGACCACCCCTCAAAA 59.892 50.000 0.00 0.00 0.00 2.44
839 846 3.435890 CCAACTAGACCACCCCTCAAAAA 60.436 47.826 0.00 0.00 0.00 1.94
881 888 3.188100 CGTCGGATGCATGCACGT 61.188 61.111 25.37 8.32 0.00 4.49
885 892 2.793946 GGATGCATGCACGTGACC 59.206 61.111 25.37 16.81 0.00 4.02
915 922 5.123820 TGCATGGGAAGAATAGTTTTTCTCG 59.876 40.000 0.00 0.00 34.89 4.04
963 970 3.943671 ATCCGATCCCAACAACCATTA 57.056 42.857 0.00 0.00 0.00 1.90
1018 1678 1.017177 TCCATAATTATCGGCGCCGC 61.017 55.000 42.78 9.12 39.59 6.53
1019 1679 1.058748 CATAATTATCGGCGCCGCG 59.941 57.895 42.78 22.20 39.59 6.46
1090 1751 2.212900 CTGTCATCGTCGGTGCTCCA 62.213 60.000 0.00 0.00 0.00 3.86
1097 1758 1.826024 GTCGGTGCTCCAGATGGAT 59.174 57.895 1.15 0.00 44.46 3.41
1259 1920 2.358737 CTCTTCCGCGGCTGGTTT 60.359 61.111 23.51 0.00 0.00 3.27
1356 2017 1.866925 CCGTTCCGTTCCTTCTTGC 59.133 57.895 0.00 0.00 0.00 4.01
1817 2479 1.001815 CAGGCGTCCGTGACAAAAATT 60.002 47.619 5.15 0.00 32.09 1.82
1900 2562 3.127533 CCAAGGGAAGAAGCCGCG 61.128 66.667 0.00 0.00 0.00 6.46
1942 2604 4.740695 GCTACAAATATCACTCTGGACGTC 59.259 45.833 7.13 7.13 0.00 4.34
2141 2803 1.254975 TGGAATTGGCGACGAGGAGA 61.255 55.000 0.00 0.00 0.00 3.71
2149 2811 2.577378 GACGAGGAGAGTTCGCGC 60.577 66.667 0.00 0.00 41.57 6.86
2203 2865 4.021894 CGTCTACTTTCCCTATGAGATGGG 60.022 50.000 0.00 0.00 44.66 4.00
2263 2925 1.993370 GTAGCTGCAGTTCCTTACACG 59.007 52.381 16.64 0.00 0.00 4.49
2344 3045 9.463902 GAGTAATAGGATGTTAGCAGGATAGTA 57.536 37.037 0.00 0.00 0.00 1.82
2349 3050 7.863901 AGGATGTTAGCAGGATAGTAATTCT 57.136 36.000 0.00 0.00 0.00 2.40
2359 3060 4.916424 AGGATAGTAATTCTCTTGGCCCAT 59.084 41.667 0.00 0.00 0.00 4.00
2458 3159 3.069016 TGGTAGTGGTGTAAGTGTCTGTG 59.931 47.826 0.00 0.00 0.00 3.66
2459 3160 2.240493 AGTGGTGTAAGTGTCTGTGC 57.760 50.000 0.00 0.00 0.00 4.57
2463 3164 1.301401 TGTAAGTGTCTGTGCGCCC 60.301 57.895 4.18 0.00 0.00 6.13
2466 3167 4.969196 AGTGTCTGTGCGCCCACG 62.969 66.667 4.18 0.00 45.04 4.94
2565 3266 7.654116 GCTTCTTGATATACTCCCTCTGTAAAC 59.346 40.741 0.00 0.00 0.00 2.01
2631 3332 6.156748 GGTAAGAACCAAGTTGGATTTTGT 57.843 37.500 28.80 8.19 45.98 2.83
2632 3333 6.213677 GGTAAGAACCAAGTTGGATTTTGTC 58.786 40.000 28.80 14.13 45.98 3.18
2633 3334 6.737622 GGTAAGAACCAAGTTGGATTTTGTCC 60.738 42.308 28.80 18.31 45.98 4.02
2666 3367 8.858003 ATATATACTAACACATATGCTCGTGC 57.142 34.615 1.58 1.71 36.57 5.34
2667 3368 2.193447 ACTAACACATATGCTCGTGCG 58.807 47.619 1.58 0.00 43.34 5.34
2668 3369 2.193447 CTAACACATATGCTCGTGCGT 58.807 47.619 9.41 9.41 43.34 5.24
2669 3370 1.438651 AACACATATGCTCGTGCGTT 58.561 45.000 9.76 1.11 43.34 4.84
2670 3371 0.721154 ACACATATGCTCGTGCGTTG 59.279 50.000 9.76 10.11 43.34 4.10
2671 3372 0.587242 CACATATGCTCGTGCGTTGC 60.587 55.000 9.76 5.71 43.34 4.17
2672 3373 1.018752 ACATATGCTCGTGCGTTGCA 61.019 50.000 9.76 14.15 43.34 4.08
2673 3374 0.096802 CATATGCTCGTGCGTTGCAA 59.903 50.000 9.76 0.00 41.47 4.08
2674 3375 0.096976 ATATGCTCGTGCGTTGCAAC 59.903 50.000 19.89 19.89 41.47 4.17
2695 3396 8.952278 TGCAACGGGAAATATAATAATGTATCC 58.048 33.333 0.00 0.00 0.00 2.59
2696 3397 8.952278 GCAACGGGAAATATAATAATGTATCCA 58.048 33.333 0.00 0.00 0.00 3.41
2888 3617 9.288576 TGCAACATATTATTATCTCCTTCCTTG 57.711 33.333 0.00 0.00 0.00 3.61
2912 3665 6.712998 TGTAAGCCCACGTAATATATTTGCAT 59.287 34.615 2.68 0.00 0.00 3.96
2958 3714 2.755103 AGCTCGCCTTCCTTATTTTTGG 59.245 45.455 0.00 0.00 0.00 3.28
2980 3798 2.632377 CAAGGATCACACGCTGGTATT 58.368 47.619 0.00 0.00 0.00 1.89
2981 3799 3.431626 CCAAGGATCACACGCTGGTATTA 60.432 47.826 0.00 0.00 0.00 0.98
2982 3800 4.380531 CAAGGATCACACGCTGGTATTAT 58.619 43.478 0.00 0.00 0.00 1.28
2983 3801 4.258702 AGGATCACACGCTGGTATTATC 57.741 45.455 0.00 0.00 0.00 1.75
2984 3802 3.898123 AGGATCACACGCTGGTATTATCT 59.102 43.478 0.00 0.00 0.00 1.98
2985 3803 3.990469 GGATCACACGCTGGTATTATCTG 59.010 47.826 0.00 0.00 0.00 2.90
2986 3804 3.452755 TCACACGCTGGTATTATCTGG 57.547 47.619 0.00 0.00 0.00 3.86
2987 3805 2.764010 TCACACGCTGGTATTATCTGGT 59.236 45.455 0.00 0.00 0.00 4.00
2988 3806 3.123804 CACACGCTGGTATTATCTGGTC 58.876 50.000 0.00 0.00 0.00 4.02
2989 3807 2.223735 ACACGCTGGTATTATCTGGTCG 60.224 50.000 0.00 0.00 0.00 4.79
2990 3808 1.340248 ACGCTGGTATTATCTGGTCGG 59.660 52.381 0.00 0.00 0.00 4.79
2991 3809 1.611977 CGCTGGTATTATCTGGTCGGA 59.388 52.381 0.00 0.00 0.00 4.55
2992 3810 2.607282 CGCTGGTATTATCTGGTCGGAC 60.607 54.545 0.00 0.00 0.00 4.79
2993 3811 2.607282 GCTGGTATTATCTGGTCGGACG 60.607 54.545 1.43 0.00 0.00 4.79
2994 3812 2.882761 CTGGTATTATCTGGTCGGACGA 59.117 50.000 1.43 0.00 0.00 4.20
2995 3813 2.882761 TGGTATTATCTGGTCGGACGAG 59.117 50.000 13.29 13.29 0.00 4.18
2996 3814 3.144506 GGTATTATCTGGTCGGACGAGA 58.855 50.000 22.37 22.37 37.36 4.04
2997 3815 3.058363 GGTATTATCTGGTCGGACGAGAC 60.058 52.174 22.54 11.54 35.80 3.36
2998 3816 2.414994 TTATCTGGTCGGACGAGACT 57.585 50.000 22.54 14.70 35.80 3.24
2999 3817 2.414994 TATCTGGTCGGACGAGACTT 57.585 50.000 22.54 12.11 35.80 3.01
3000 3818 0.811915 ATCTGGTCGGACGAGACTTG 59.188 55.000 22.54 0.00 35.80 3.16
3001 3819 1.444553 CTGGTCGGACGAGACTTGC 60.445 63.158 14.16 0.00 40.76 4.01
3002 3820 2.126031 GGTCGGACGAGACTTGCC 60.126 66.667 1.43 0.00 40.76 4.52
3003 3821 2.637383 GGTCGGACGAGACTTGCCT 61.637 63.158 1.43 0.00 40.76 4.75
3004 3822 1.444553 GTCGGACGAGACTTGCCTG 60.445 63.158 0.00 0.00 38.09 4.85
3005 3823 2.811317 CGGACGAGACTTGCCTGC 60.811 66.667 0.00 0.00 0.00 4.85
3006 3824 2.659610 GGACGAGACTTGCCTGCT 59.340 61.111 0.00 0.00 0.00 4.24
3007 3825 1.446966 GGACGAGACTTGCCTGCTC 60.447 63.158 0.00 0.00 0.00 4.26
3008 3826 1.446966 GACGAGACTTGCCTGCTCC 60.447 63.158 0.00 0.00 0.00 4.70
3009 3827 2.125350 CGAGACTTGCCTGCTCCC 60.125 66.667 0.00 0.00 0.00 4.30
3010 3828 2.654079 CGAGACTTGCCTGCTCCCT 61.654 63.158 0.00 0.00 0.00 4.20
3011 3829 1.682257 GAGACTTGCCTGCTCCCTT 59.318 57.895 0.00 0.00 0.00 3.95
3012 3830 0.392327 GAGACTTGCCTGCTCCCTTC 60.392 60.000 0.00 0.00 0.00 3.46
3013 3831 1.377856 GACTTGCCTGCTCCCTTCC 60.378 63.158 0.00 0.00 0.00 3.46
3014 3832 2.044551 CTTGCCTGCTCCCTTCCC 60.045 66.667 0.00 0.00 0.00 3.97
3015 3833 2.858476 TTGCCTGCTCCCTTCCCA 60.858 61.111 0.00 0.00 0.00 4.37
3016 3834 2.220786 CTTGCCTGCTCCCTTCCCAT 62.221 60.000 0.00 0.00 0.00 4.00
3017 3835 2.123982 GCCTGCTCCCTTCCCATG 60.124 66.667 0.00 0.00 0.00 3.66
3018 3836 2.123982 CCTGCTCCCTTCCCATGC 60.124 66.667 0.00 0.00 0.00 4.06
3019 3837 2.687610 CCTGCTCCCTTCCCATGCT 61.688 63.158 0.00 0.00 0.00 3.79
3020 3838 1.153005 CTGCTCCCTTCCCATGCTC 60.153 63.158 0.00 0.00 0.00 4.26
3021 3839 2.194326 GCTCCCTTCCCATGCTCC 59.806 66.667 0.00 0.00 0.00 4.70
3022 3840 2.922234 CTCCCTTCCCATGCTCCC 59.078 66.667 0.00 0.00 0.00 4.30
3023 3841 2.002977 CTCCCTTCCCATGCTCCCA 61.003 63.158 0.00 0.00 0.00 4.37
3024 3842 1.309013 TCCCTTCCCATGCTCCCAT 60.309 57.895 0.00 0.00 0.00 4.00
3025 3843 1.152368 CCCTTCCCATGCTCCCATC 59.848 63.158 0.00 0.00 0.00 3.51
3026 3844 1.152368 CCTTCCCATGCTCCCATCC 59.848 63.158 0.00 0.00 0.00 3.51
3027 3845 1.228063 CTTCCCATGCTCCCATCCG 60.228 63.158 0.00 0.00 0.00 4.18
3028 3846 1.987807 CTTCCCATGCTCCCATCCGT 61.988 60.000 0.00 0.00 0.00 4.69
3029 3847 2.203252 CCCATGCTCCCATCCGTG 60.203 66.667 0.00 0.00 0.00 4.94
3030 3848 2.903855 CCATGCTCCCATCCGTGC 60.904 66.667 0.00 0.00 0.00 5.34
3031 3849 2.191375 CATGCTCCCATCCGTGCT 59.809 61.111 0.00 0.00 0.00 4.40
3032 3850 1.890979 CATGCTCCCATCCGTGCTC 60.891 63.158 0.00 0.00 0.00 4.26
3033 3851 3.112205 ATGCTCCCATCCGTGCTCC 62.112 63.158 0.00 0.00 0.00 4.70
3034 3852 4.554036 GCTCCCATCCGTGCTCCC 62.554 72.222 0.00 0.00 0.00 4.30
3035 3853 4.227134 CTCCCATCCGTGCTCCCG 62.227 72.222 0.00 0.00 0.00 5.14
3045 3863 4.830765 TGCTCCCGCATACGTGGC 62.831 66.667 0.00 0.21 42.25 5.01
3046 3864 4.530857 GCTCCCGCATACGTGGCT 62.531 66.667 11.48 0.00 41.87 4.75
3047 3865 2.186903 CTCCCGCATACGTGGCTT 59.813 61.111 11.48 0.00 41.87 4.35
3048 3866 2.125310 TCCCGCATACGTGGCTTG 60.125 61.111 11.48 3.68 41.87 4.01
3049 3867 2.125310 CCCGCATACGTGGCTTGA 60.125 61.111 11.48 0.00 41.87 3.02
3050 3868 1.523711 CCCGCATACGTGGCTTGAT 60.524 57.895 11.48 0.00 41.87 2.57
3051 3869 1.095228 CCCGCATACGTGGCTTGATT 61.095 55.000 11.48 0.00 41.87 2.57
3052 3870 0.732571 CCGCATACGTGGCTTGATTT 59.267 50.000 11.48 0.00 35.59 2.17
3053 3871 1.531677 CCGCATACGTGGCTTGATTTG 60.532 52.381 11.48 0.00 35.59 2.32
3054 3872 1.396648 CGCATACGTGGCTTGATTTGA 59.603 47.619 11.48 0.00 33.53 2.69
3055 3873 2.032054 CGCATACGTGGCTTGATTTGAT 59.968 45.455 11.48 0.00 33.53 2.57
3056 3874 3.487376 CGCATACGTGGCTTGATTTGATT 60.487 43.478 11.48 0.00 33.53 2.57
3057 3875 3.792956 GCATACGTGGCTTGATTTGATTG 59.207 43.478 0.00 0.00 0.00 2.67
3058 3876 4.438608 GCATACGTGGCTTGATTTGATTGA 60.439 41.667 0.00 0.00 0.00 2.57
3059 3877 5.639757 CATACGTGGCTTGATTTGATTGAA 58.360 37.500 0.00 0.00 0.00 2.69
3060 3878 4.582701 ACGTGGCTTGATTTGATTGAAA 57.417 36.364 0.00 0.00 0.00 2.69
3061 3879 4.298332 ACGTGGCTTGATTTGATTGAAAC 58.702 39.130 0.00 0.00 0.00 2.78
3062 3880 4.202101 ACGTGGCTTGATTTGATTGAAACA 60.202 37.500 0.00 0.00 0.00 2.83
3063 3881 4.744137 CGTGGCTTGATTTGATTGAAACAA 59.256 37.500 0.00 0.00 0.00 2.83
3064 3882 5.233902 CGTGGCTTGATTTGATTGAAACAAA 59.766 36.000 3.11 3.11 40.62 2.83
3065 3883 6.238049 CGTGGCTTGATTTGATTGAAACAAAA 60.238 34.615 4.74 0.00 39.95 2.44
3066 3884 7.518689 CGTGGCTTGATTTGATTGAAACAAAAT 60.519 33.333 4.74 0.00 39.95 1.82
3067 3885 8.772705 GTGGCTTGATTTGATTGAAACAAAATA 58.227 29.630 4.74 0.00 39.95 1.40
3068 3886 9.334947 TGGCTTGATTTGATTGAAACAAAATAA 57.665 25.926 4.74 3.25 39.95 1.40
3069 3887 9.815936 GGCTTGATTTGATTGAAACAAAATAAG 57.184 29.630 16.02 16.02 39.95 1.73
3070 3888 9.815936 GCTTGATTTGATTGAAACAAAATAAGG 57.184 29.630 19.05 7.23 39.95 2.69
3071 3889 9.815936 CTTGATTTGATTGAAACAAAATAAGGC 57.184 29.630 4.74 0.00 39.95 4.35
3072 3890 8.321650 TGATTTGATTGAAACAAAATAAGGCC 57.678 30.769 4.74 0.00 39.95 5.19
3073 3891 7.390162 TGATTTGATTGAAACAAAATAAGGCCC 59.610 33.333 4.74 0.00 39.95 5.80
3074 3892 4.815269 TGATTGAAACAAAATAAGGCCCG 58.185 39.130 0.00 0.00 0.00 6.13
3075 3893 3.669251 TTGAAACAAAATAAGGCCCGG 57.331 42.857 0.00 0.00 0.00 5.73
3076 3894 1.273886 TGAAACAAAATAAGGCCCGGC 59.726 47.619 0.00 0.00 0.00 6.13
3077 3895 1.548719 GAAACAAAATAAGGCCCGGCT 59.451 47.619 9.86 0.00 0.00 5.52
3078 3896 1.182667 AACAAAATAAGGCCCGGCTC 58.817 50.000 9.86 0.00 0.00 4.70
3079 3897 0.683179 ACAAAATAAGGCCCGGCTCC 60.683 55.000 9.86 0.00 0.00 4.70
3080 3898 0.682855 CAAAATAAGGCCCGGCTCCA 60.683 55.000 9.86 0.00 0.00 3.86
3081 3899 0.261696 AAAATAAGGCCCGGCTCCAT 59.738 50.000 9.86 4.17 0.00 3.41
3082 3900 0.178990 AAATAAGGCCCGGCTCCATC 60.179 55.000 9.86 0.00 0.00 3.51
3083 3901 2.069165 AATAAGGCCCGGCTCCATCC 62.069 60.000 9.86 0.00 0.00 3.51
3088 3906 2.447765 CCCGGCTCCATCCCCTTA 60.448 66.667 0.00 0.00 0.00 2.69
3089 3907 2.076184 CCCGGCTCCATCCCCTTAA 61.076 63.158 0.00 0.00 0.00 1.85
3090 3908 1.641552 CCCGGCTCCATCCCCTTAAA 61.642 60.000 0.00 0.00 0.00 1.52
3091 3909 0.257616 CCGGCTCCATCCCCTTAAAA 59.742 55.000 0.00 0.00 0.00 1.52
3092 3910 1.133482 CCGGCTCCATCCCCTTAAAAT 60.133 52.381 0.00 0.00 0.00 1.82
3093 3911 2.230660 CGGCTCCATCCCCTTAAAATC 58.769 52.381 0.00 0.00 0.00 2.17
3094 3912 2.422803 CGGCTCCATCCCCTTAAAATCA 60.423 50.000 0.00 0.00 0.00 2.57
3095 3913 3.225940 GGCTCCATCCCCTTAAAATCAG 58.774 50.000 0.00 0.00 0.00 2.90
3096 3914 3.225940 GCTCCATCCCCTTAAAATCAGG 58.774 50.000 0.00 0.00 0.00 3.86
3157 3975 3.595691 CGTAGGATGATGTGGGAGC 57.404 57.895 0.00 0.00 0.00 4.70
3158 3976 0.752658 CGTAGGATGATGTGGGAGCA 59.247 55.000 0.00 0.00 0.00 4.26
3159 3977 1.345741 CGTAGGATGATGTGGGAGCAT 59.654 52.381 0.00 0.00 31.67 3.79
3160 3978 2.775890 GTAGGATGATGTGGGAGCATG 58.224 52.381 0.00 0.00 28.07 4.06
3161 3979 1.514983 AGGATGATGTGGGAGCATGA 58.485 50.000 0.00 0.00 28.07 3.07
3162 3980 1.848388 AGGATGATGTGGGAGCATGAA 59.152 47.619 0.00 0.00 28.07 2.57
3163 3981 2.158652 AGGATGATGTGGGAGCATGAAG 60.159 50.000 0.00 0.00 28.07 3.02
3164 3982 2.158711 GGATGATGTGGGAGCATGAAGA 60.159 50.000 0.00 0.00 28.07 2.87
3165 3983 2.704464 TGATGTGGGAGCATGAAGAG 57.296 50.000 0.00 0.00 0.00 2.85
3166 3984 1.211212 TGATGTGGGAGCATGAAGAGG 59.789 52.381 0.00 0.00 0.00 3.69
3167 3985 0.549950 ATGTGGGAGCATGAAGAGGG 59.450 55.000 0.00 0.00 0.00 4.30
3168 3986 0.547471 TGTGGGAGCATGAAGAGGGA 60.547 55.000 0.00 0.00 0.00 4.20
3169 3987 0.179936 GTGGGAGCATGAAGAGGGAG 59.820 60.000 0.00 0.00 0.00 4.30
3170 3988 1.148048 GGGAGCATGAAGAGGGAGC 59.852 63.158 0.00 0.00 0.00 4.70
3171 3989 1.630126 GGGAGCATGAAGAGGGAGCA 61.630 60.000 0.00 0.00 0.00 4.26
3172 3990 0.179051 GGAGCATGAAGAGGGAGCAG 60.179 60.000 0.00 0.00 0.00 4.24
3173 3991 0.179051 GAGCATGAAGAGGGAGCAGG 60.179 60.000 0.00 0.00 0.00 4.85
3174 3992 1.823041 GCATGAAGAGGGAGCAGGC 60.823 63.158 0.00 0.00 32.07 4.85
3175 3993 1.605992 CATGAAGAGGGAGCAGGCA 59.394 57.895 0.00 0.00 0.00 4.75
3176 3994 0.034767 CATGAAGAGGGAGCAGGCAA 60.035 55.000 0.00 0.00 0.00 4.52
3177 3995 0.700564 ATGAAGAGGGAGCAGGCAAA 59.299 50.000 0.00 0.00 0.00 3.68
3178 3996 0.250901 TGAAGAGGGAGCAGGCAAAC 60.251 55.000 0.00 0.00 0.00 2.93
3179 3997 0.962855 GAAGAGGGAGCAGGCAAACC 60.963 60.000 0.00 0.00 0.00 3.27
3180 3998 2.747855 GAGGGAGCAGGCAAACCG 60.748 66.667 0.00 0.00 42.76 4.44
3181 3999 4.351054 AGGGAGCAGGCAAACCGG 62.351 66.667 0.00 0.00 42.76 5.28
3182 4000 4.344865 GGGAGCAGGCAAACCGGA 62.345 66.667 9.46 0.00 42.76 5.14
3183 4001 2.044946 GGAGCAGGCAAACCGGAT 60.045 61.111 9.46 0.00 42.76 4.18
3184 4002 2.115291 GGAGCAGGCAAACCGGATC 61.115 63.158 9.46 0.00 44.72 3.36
3185 4003 2.044946 AGCAGGCAAACCGGATCC 60.045 61.111 9.46 0.00 42.76 3.36
3190 4008 2.222027 CAGGCAAACCGGATCCTTATC 58.778 52.381 9.46 0.00 42.76 1.75
3216 4034 6.058833 GGTCATTATCCTCTCCTTCCTTTTC 58.941 44.000 0.00 0.00 0.00 2.29
3242 4060 7.761249 CCTTTTTGCGAAATTCTCTTTCCATAT 59.239 33.333 0.00 0.00 0.00 1.78
3243 4061 9.143631 CTTTTTGCGAAATTCTCTTTCCATATT 57.856 29.630 0.00 0.00 0.00 1.28
3244 4062 9.487790 TTTTTGCGAAATTCTCTTTCCATATTT 57.512 25.926 0.00 0.00 0.00 1.40
3270 4088 0.179009 ATGCCTGCTAATCACGCCAT 60.179 50.000 0.00 0.00 0.00 4.40
3334 4158 6.870439 TCTCATGAAATCTAAGCCATATGTCG 59.130 38.462 1.24 0.00 0.00 4.35
3347 4171 4.133820 CCATATGTCGGCCATCTTTGTTA 58.866 43.478 2.24 0.00 34.86 2.41
3348 4172 4.761739 CCATATGTCGGCCATCTTTGTTAT 59.238 41.667 2.24 0.00 34.86 1.89
3414 6757 7.974501 ACATATATAAATCAGTCGAACGGATCC 59.025 37.037 0.00 0.00 31.92 3.36
3445 6788 7.011669 GCAGCGAGGTGGTACTAATTTATAAAA 59.988 37.037 1.21 0.00 0.00 1.52
3496 6839 3.066760 GCTTTAGTTCTGTTGGTTGCAGT 59.933 43.478 0.00 0.00 35.60 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.549221 CGTTGTTATTTTGACGTGGGCTT 60.549 43.478 0.00 0.00 0.00 4.35
1 2 2.031508 CGTTGTTATTTTGACGTGGGCT 60.032 45.455 0.00 0.00 0.00 5.19
2 3 2.287129 ACGTTGTTATTTTGACGTGGGC 60.287 45.455 0.00 0.00 45.75 5.36
3 4 3.612472 ACGTTGTTATTTTGACGTGGG 57.388 42.857 0.00 0.00 45.75 4.61
4 5 5.121142 AGGATACGTTGTTATTTTGACGTGG 59.879 40.000 10.23 0.00 46.73 4.94
5 6 6.128769 TGAGGATACGTTGTTATTTTGACGTG 60.129 38.462 10.23 0.00 46.73 4.49
7 8 6.397831 TGAGGATACGTTGTTATTTTGACG 57.602 37.500 0.00 0.00 46.39 4.35
8 9 9.061610 CAAATGAGGATACGTTGTTATTTTGAC 57.938 33.333 0.00 0.00 46.39 3.18
9 10 9.004717 TCAAATGAGGATACGTTGTTATTTTGA 57.995 29.630 0.00 0.00 46.39 2.69
10 11 9.061610 GTCAAATGAGGATACGTTGTTATTTTG 57.938 33.333 0.00 0.00 46.39 2.44
11 12 8.788806 TGTCAAATGAGGATACGTTGTTATTTT 58.211 29.630 0.00 0.00 46.39 1.82
12 13 8.330466 TGTCAAATGAGGATACGTTGTTATTT 57.670 30.769 0.00 0.00 46.39 1.40
13 14 7.915293 TGTCAAATGAGGATACGTTGTTATT 57.085 32.000 0.00 0.00 46.39 1.40
14 15 7.012327 CCATGTCAAATGAGGATACGTTGTTAT 59.988 37.037 0.00 0.00 46.39 1.89
15 16 6.315144 CCATGTCAAATGAGGATACGTTGTTA 59.685 38.462 0.00 0.00 46.39 2.41
16 17 5.123820 CCATGTCAAATGAGGATACGTTGTT 59.876 40.000 0.00 0.00 46.39 2.83
17 18 4.635765 CCATGTCAAATGAGGATACGTTGT 59.364 41.667 0.00 0.00 46.39 3.32
18 19 4.035558 CCCATGTCAAATGAGGATACGTTG 59.964 45.833 0.00 0.00 46.39 4.10
19 20 4.199310 CCCATGTCAAATGAGGATACGTT 58.801 43.478 0.00 0.00 46.39 3.99
20 21 3.433598 CCCCATGTCAAATGAGGATACGT 60.434 47.826 0.00 0.00 46.39 3.57
21 22 3.141398 CCCCATGTCAAATGAGGATACG 58.859 50.000 0.00 0.00 46.39 3.06
22 23 2.887152 GCCCCATGTCAAATGAGGATAC 59.113 50.000 0.00 0.00 0.00 2.24
23 24 2.785269 AGCCCCATGTCAAATGAGGATA 59.215 45.455 0.00 0.00 0.00 2.59
24 25 1.572415 AGCCCCATGTCAAATGAGGAT 59.428 47.619 0.00 0.00 0.00 3.24
25 26 1.002069 AGCCCCATGTCAAATGAGGA 58.998 50.000 0.00 0.00 0.00 3.71
26 27 1.108776 CAGCCCCATGTCAAATGAGG 58.891 55.000 0.00 0.00 0.00 3.86
27 28 2.133281 TCAGCCCCATGTCAAATGAG 57.867 50.000 0.00 0.00 0.00 2.90
28 29 2.449464 CTTCAGCCCCATGTCAAATGA 58.551 47.619 0.00 0.00 0.00 2.57
29 30 1.134907 GCTTCAGCCCCATGTCAAATG 60.135 52.381 0.00 0.00 34.31 2.32
30 31 1.188863 GCTTCAGCCCCATGTCAAAT 58.811 50.000 0.00 0.00 34.31 2.32
31 32 0.178967 TGCTTCAGCCCCATGTCAAA 60.179 50.000 0.00 0.00 41.18 2.69
32 33 0.609957 CTGCTTCAGCCCCATGTCAA 60.610 55.000 0.00 0.00 41.18 3.18
33 34 1.001764 CTGCTTCAGCCCCATGTCA 60.002 57.895 0.00 0.00 41.18 3.58
34 35 1.751927 CCTGCTTCAGCCCCATGTC 60.752 63.158 0.00 0.00 41.18 3.06
35 36 2.207501 CTCCTGCTTCAGCCCCATGT 62.208 60.000 0.00 0.00 41.18 3.21
36 37 1.453379 CTCCTGCTTCAGCCCCATG 60.453 63.158 0.00 0.00 41.18 3.66
37 38 1.617536 TCTCCTGCTTCAGCCCCAT 60.618 57.895 0.00 0.00 41.18 4.00
38 39 2.203983 TCTCCTGCTTCAGCCCCA 60.204 61.111 0.00 0.00 41.18 4.96
39 40 2.250741 GAGTCTCCTGCTTCAGCCCC 62.251 65.000 0.00 0.00 41.18 5.80
40 41 1.220477 GAGTCTCCTGCTTCAGCCC 59.780 63.158 0.00 0.00 41.18 5.19
41 42 1.153667 CGAGTCTCCTGCTTCAGCC 60.154 63.158 0.00 0.00 41.18 4.85
42 43 0.459489 ATCGAGTCTCCTGCTTCAGC 59.541 55.000 0.00 0.00 42.50 4.26
43 44 2.957491 AATCGAGTCTCCTGCTTCAG 57.043 50.000 0.00 0.00 0.00 3.02
44 45 3.259374 AGAAAATCGAGTCTCCTGCTTCA 59.741 43.478 0.00 0.00 0.00 3.02
45 46 3.855858 AGAAAATCGAGTCTCCTGCTTC 58.144 45.455 0.00 0.00 0.00 3.86
46 47 3.855858 GAGAAAATCGAGTCTCCTGCTT 58.144 45.455 10.88 0.00 35.26 3.91
47 48 3.518634 GAGAAAATCGAGTCTCCTGCT 57.481 47.619 10.88 0.00 35.26 4.24
52 53 2.869192 GCATGGGAGAAAATCGAGTCTC 59.131 50.000 12.78 12.78 39.70 3.36
58 59 1.328680 CTCGTGCATGGGAGAAAATCG 59.671 52.381 0.00 0.00 31.90 3.34
77 78 2.607750 ACCATGCACGGGACCTCT 60.608 61.111 12.94 0.00 0.00 3.69
145 146 3.064958 GCCGTGGGAAAGCTTTAGAATAC 59.935 47.826 12.68 6.58 0.00 1.89
195 196 4.627035 CAGTTTCAATGCGTATCTGACAGA 59.373 41.667 7.80 7.80 0.00 3.41
236 237 1.478137 CAACGCGTATCTCTGCTACC 58.522 55.000 14.46 0.00 0.00 3.18
240 241 1.587034 GTAACCAACGCGTATCTCTGC 59.413 52.381 14.46 0.00 0.00 4.26
244 245 1.738030 GCTGGTAACCAACGCGTATCT 60.738 52.381 14.46 0.00 30.80 1.98
249 250 1.082366 GTTGCTGGTAACCAACGCG 60.082 57.895 3.53 3.53 32.96 6.01
281 282 2.548480 CGCATACTCGATGTGTAGAGGA 59.452 50.000 0.00 0.00 40.58 3.71
302 303 0.321996 GGAATAGAGGATCCGGCACC 59.678 60.000 5.98 1.96 33.66 5.01
314 315 4.103153 CCTCTGTAAGCAATGGGGAATAGA 59.897 45.833 0.00 0.00 0.00 1.98
315 316 4.392940 CCTCTGTAAGCAATGGGGAATAG 58.607 47.826 0.00 0.00 0.00 1.73
336 337 0.990818 ATGGGAGGAGGAAGAAGGCC 60.991 60.000 0.00 0.00 0.00 5.19
337 338 0.472044 GATGGGAGGAGGAAGAAGGC 59.528 60.000 0.00 0.00 0.00 4.35
407 408 5.655488 AGCGATAGAAAGCATAGCGATTAT 58.345 37.500 0.00 0.00 34.10 1.28
416 417 3.812053 GACCATCAAGCGATAGAAAGCAT 59.188 43.478 0.00 0.00 39.76 3.79
419 420 3.706698 TCGACCATCAAGCGATAGAAAG 58.293 45.455 0.00 0.00 39.76 2.62
466 467 3.437741 TGACGTAATTGCAGTAGAGACGA 59.562 43.478 11.11 0.00 33.30 4.20
493 494 9.528018 GAACTCGAAGATTTCTAATCTGAGATT 57.472 33.333 12.86 12.86 41.99 2.40
541 542 2.887151 ATCTTAGGTTGCAGGCTTGT 57.113 45.000 0.00 0.00 0.00 3.16
559 560 9.599866 TGTACGAAGAATCATCTGTTGAAATAT 57.400 29.630 0.00 0.00 38.03 1.28
581 582 8.755696 TCCATCTTAATTTTGCATGTTTGTAC 57.244 30.769 0.00 0.00 0.00 2.90
590 591 7.121759 CCTTCTCTTCTCCATCTTAATTTTGCA 59.878 37.037 0.00 0.00 0.00 4.08
600 601 4.618635 TCATCACCTTCTCTTCTCCATCT 58.381 43.478 0.00 0.00 0.00 2.90
659 664 5.559035 CGCAACTTCTTCTCTGTACCAAAAG 60.559 44.000 0.00 0.00 0.00 2.27
664 669 2.338500 CCGCAACTTCTTCTCTGTACC 58.662 52.381 0.00 0.00 0.00 3.34
675 680 1.966451 CCACCTGTCCCGCAACTTC 60.966 63.158 0.00 0.00 0.00 3.01
678 683 3.901797 CTCCCACCTGTCCCGCAAC 62.902 68.421 0.00 0.00 0.00 4.17
722 728 5.049886 CCCGTATCAATGTCAGTCATCAATG 60.050 44.000 0.00 0.00 35.48 2.82
787 793 2.853281 GCGCGTGCAAACTTACTTCTTT 60.853 45.455 17.66 0.00 42.15 2.52
804 811 0.382158 TAGTTGGAGATCTGAGCGCG 59.618 55.000 0.00 0.00 0.00 6.86
808 815 3.383185 GGTGGTCTAGTTGGAGATCTGAG 59.617 52.174 0.00 0.00 0.00 3.35
811 818 2.627217 GGGGTGGTCTAGTTGGAGATCT 60.627 54.545 0.00 0.00 0.00 2.75
841 848 5.701290 CGTTGGTCTAGTTGGAGATCTTTTT 59.299 40.000 0.00 0.00 0.00 1.94
842 849 5.221661 ACGTTGGTCTAGTTGGAGATCTTTT 60.222 40.000 0.00 0.00 0.00 2.27
843 850 4.283722 ACGTTGGTCTAGTTGGAGATCTTT 59.716 41.667 0.00 0.00 0.00 2.52
844 851 3.833070 ACGTTGGTCTAGTTGGAGATCTT 59.167 43.478 0.00 0.00 0.00 2.40
845 852 3.432378 ACGTTGGTCTAGTTGGAGATCT 58.568 45.455 0.00 0.00 0.00 2.75
846 853 3.731264 CGACGTTGGTCTAGTTGGAGATC 60.731 52.174 0.00 0.00 41.16 2.75
847 854 2.163815 CGACGTTGGTCTAGTTGGAGAT 59.836 50.000 0.00 0.00 41.16 2.75
848 855 1.538512 CGACGTTGGTCTAGTTGGAGA 59.461 52.381 0.00 0.00 41.16 3.71
849 856 1.402456 CCGACGTTGGTCTAGTTGGAG 60.402 57.143 14.24 0.00 40.94 3.86
850 857 0.599558 CCGACGTTGGTCTAGTTGGA 59.400 55.000 14.24 0.00 40.94 3.53
851 858 0.599558 TCCGACGTTGGTCTAGTTGG 59.400 55.000 21.46 0.00 41.16 3.77
852 859 2.259618 CATCCGACGTTGGTCTAGTTG 58.740 52.381 21.46 7.33 41.16 3.16
853 860 1.403780 GCATCCGACGTTGGTCTAGTT 60.404 52.381 21.46 0.00 41.16 2.24
854 861 0.172803 GCATCCGACGTTGGTCTAGT 59.827 55.000 21.46 1.65 41.16 2.57
855 862 0.172578 TGCATCCGACGTTGGTCTAG 59.827 55.000 21.46 10.72 41.16 2.43
856 863 0.821517 ATGCATCCGACGTTGGTCTA 59.178 50.000 21.46 2.69 41.16 2.59
857 864 0.740868 CATGCATCCGACGTTGGTCT 60.741 55.000 21.46 7.73 41.16 3.85
858 865 1.715585 CATGCATCCGACGTTGGTC 59.284 57.895 21.46 12.13 39.89 4.02
859 866 2.398554 GCATGCATCCGACGTTGGT 61.399 57.895 21.46 6.42 0.00 3.67
900 907 4.997395 TGCTTCAGCGAGAAAAACTATTCT 59.003 37.500 0.00 0.00 45.83 2.40
907 914 1.202758 TCCCTGCTTCAGCGAGAAAAA 60.203 47.619 0.00 0.00 45.83 1.94
915 922 1.886777 GCTCGATCCCTGCTTCAGC 60.887 63.158 0.00 0.00 42.50 4.26
963 970 4.831710 GTGGGATACTCGGATACTAGGTTT 59.168 45.833 0.00 0.00 32.62 3.27
1021 1681 2.955022 ATTGGATCTCTGCAGCGGCC 62.955 60.000 9.47 9.11 40.13 6.13
1259 1920 1.150536 GTTGGGCTGGTTCTGGACA 59.849 57.895 0.00 0.00 0.00 4.02
1296 1957 1.071987 GGACGGGGTCGGAAAAACT 59.928 57.895 0.00 0.00 41.39 2.66
1356 2017 2.791560 CGAAGATGCTGTCGTTATCCAG 59.208 50.000 0.00 0.00 32.61 3.86
1817 2479 3.699955 CTCGCCGCAGATTCCGTCA 62.700 63.158 0.00 0.00 0.00 4.35
1946 2608 2.431771 TTGCCATCGTCCGTGTCG 60.432 61.111 0.00 0.00 0.00 4.35
2011 2673 1.416813 CCTCTCGCTCAACACATCGC 61.417 60.000 0.00 0.00 0.00 4.58
2141 2803 3.521308 CTTGCAAACCGCGCGAACT 62.521 57.895 34.63 12.35 46.97 3.01
2203 2865 0.889186 TGGGCGCCAAAAAGAGAGAC 60.889 55.000 30.85 6.35 0.00 3.36
2263 2925 4.892433 AGCTACCACATCTATGCTTCATC 58.108 43.478 0.00 0.00 0.00 2.92
2318 3019 8.356000 ACTATCCTGCTAACATCCTATTACTC 57.644 38.462 0.00 0.00 0.00 2.59
2323 3024 9.554053 AGAATTACTATCCTGCTAACATCCTAT 57.446 33.333 0.00 0.00 0.00 2.57
2384 3085 0.590481 GCGAACGAAAACACGCCTTT 60.590 50.000 0.00 0.00 44.27 3.11
2458 3159 0.450184 AATGATTACAACGTGGGCGC 59.550 50.000 0.00 0.00 42.83 6.53
2459 3160 1.466950 ACAATGATTACAACGTGGGCG 59.533 47.619 0.00 0.00 44.93 6.13
2523 3224 6.804677 TCAAGAAGCTGAAAATTAGCAAACA 58.195 32.000 1.73 0.00 43.53 2.83
2596 3297 9.495382 AACTTGGTTCTTACCTCTATCTAGAAT 57.505 33.333 0.00 0.00 45.27 2.40
2597 3298 8.750298 CAACTTGGTTCTTACCTCTATCTAGAA 58.250 37.037 0.00 0.00 45.27 2.10
2598 3299 7.342284 CCAACTTGGTTCTTACCTCTATCTAGA 59.658 40.741 0.00 0.00 45.27 2.43
2599 3300 7.342284 TCCAACTTGGTTCTTACCTCTATCTAG 59.658 40.741 7.72 0.00 45.27 2.43
2600 3301 7.186972 TCCAACTTGGTTCTTACCTCTATCTA 58.813 38.462 7.72 0.00 45.27 1.98
2601 3302 6.023603 TCCAACTTGGTTCTTACCTCTATCT 58.976 40.000 7.72 0.00 45.27 1.98
2602 3303 6.295719 TCCAACTTGGTTCTTACCTCTATC 57.704 41.667 7.72 0.00 45.27 2.08
2603 3304 6.893020 ATCCAACTTGGTTCTTACCTCTAT 57.107 37.500 7.72 0.00 45.27 1.98
2604 3305 6.697641 AATCCAACTTGGTTCTTACCTCTA 57.302 37.500 7.72 0.00 45.27 2.43
2605 3306 5.584551 AATCCAACTTGGTTCTTACCTCT 57.415 39.130 7.72 0.00 45.27 3.69
2606 3307 6.040504 ACAAAATCCAACTTGGTTCTTACCTC 59.959 38.462 7.72 0.00 45.27 3.85
2607 3308 5.897250 ACAAAATCCAACTTGGTTCTTACCT 59.103 36.000 7.72 0.00 45.27 3.08
2608 3309 6.156748 ACAAAATCCAACTTGGTTCTTACC 57.843 37.500 7.72 0.00 45.26 2.85
2640 3341 9.946165 GCACGAGCATATGTGTTAGTATATATA 57.054 33.333 4.29 0.00 41.58 0.86
2641 3342 7.644157 CGCACGAGCATATGTGTTAGTATATAT 59.356 37.037 5.50 0.00 42.27 0.86
2642 3343 6.964934 CGCACGAGCATATGTGTTAGTATATA 59.035 38.462 5.50 0.00 42.27 0.86
2643 3344 5.800438 CGCACGAGCATATGTGTTAGTATAT 59.200 40.000 5.50 0.00 42.27 0.86
2644 3345 5.151389 CGCACGAGCATATGTGTTAGTATA 58.849 41.667 5.50 0.00 42.27 1.47
2645 3346 3.981416 CGCACGAGCATATGTGTTAGTAT 59.019 43.478 5.50 0.00 42.27 2.12
2646 3347 3.181494 ACGCACGAGCATATGTGTTAGTA 60.181 43.478 5.50 0.00 42.27 1.82
2647 3348 2.193447 CGCACGAGCATATGTGTTAGT 58.807 47.619 5.50 0.00 42.27 2.24
2648 3349 2.193447 ACGCACGAGCATATGTGTTAG 58.807 47.619 5.50 0.94 42.27 2.34
2649 3350 2.287393 ACGCACGAGCATATGTGTTA 57.713 45.000 5.50 0.00 42.27 2.41
2650 3351 1.438651 AACGCACGAGCATATGTGTT 58.561 45.000 5.50 7.09 43.02 3.32
2651 3352 0.721154 CAACGCACGAGCATATGTGT 59.279 50.000 5.50 0.00 41.21 3.72
2652 3353 0.587242 GCAACGCACGAGCATATGTG 60.587 55.000 5.50 0.00 42.27 3.21
2653 3354 1.018752 TGCAACGCACGAGCATATGT 61.019 50.000 5.50 0.00 42.27 2.29
2654 3355 0.096802 TTGCAACGCACGAGCATATG 59.903 50.000 13.57 0.00 38.71 1.78
2655 3356 0.096976 GTTGCAACGCACGAGCATAT 59.903 50.000 14.90 0.00 38.71 1.78
2656 3357 1.495509 GTTGCAACGCACGAGCATA 59.504 52.632 14.90 5.07 38.71 3.14
2657 3358 2.252260 GTTGCAACGCACGAGCAT 59.748 55.556 14.90 0.00 38.71 3.79
2658 3359 4.292208 CGTTGCAACGCACGAGCA 62.292 61.111 35.89 9.96 46.06 4.26
2669 3370 8.952278 GGATACATTATTATATTTCCCGTTGCA 58.048 33.333 0.00 0.00 0.00 4.08
2670 3371 8.952278 TGGATACATTATTATATTTCCCGTTGC 58.048 33.333 0.00 0.00 46.17 4.17
2885 3614 7.075741 GCAAATATATTACGTGGGCTTACAAG 58.924 38.462 0.00 0.00 0.00 3.16
2888 3617 6.548441 TGCAAATATATTACGTGGGCTTAC 57.452 37.500 0.00 0.00 0.00 2.34
2958 3714 2.401766 CCAGCGTGTGATCCTTGGC 61.402 63.158 0.00 0.00 0.00 4.52
2980 3798 2.014857 CAAGTCTCGTCCGACCAGATA 58.985 52.381 0.00 0.00 34.46 1.98
2981 3799 0.811915 CAAGTCTCGTCCGACCAGAT 59.188 55.000 0.00 0.00 34.46 2.90
2982 3800 1.863662 GCAAGTCTCGTCCGACCAGA 61.864 60.000 0.00 0.00 34.46 3.86
2983 3801 1.444553 GCAAGTCTCGTCCGACCAG 60.445 63.158 0.00 0.00 34.46 4.00
2984 3802 2.649034 GCAAGTCTCGTCCGACCA 59.351 61.111 0.00 0.00 34.46 4.02
2985 3803 2.126031 GGCAAGTCTCGTCCGACC 60.126 66.667 0.00 0.00 34.46 4.79
2986 3804 1.444553 CAGGCAAGTCTCGTCCGAC 60.445 63.158 0.00 0.00 0.00 4.79
2987 3805 2.962569 CAGGCAAGTCTCGTCCGA 59.037 61.111 0.00 0.00 0.00 4.55
2988 3806 2.811317 GCAGGCAAGTCTCGTCCG 60.811 66.667 0.00 0.00 0.00 4.79
2989 3807 1.446966 GAGCAGGCAAGTCTCGTCC 60.447 63.158 0.00 0.00 0.00 4.79
2990 3808 1.446966 GGAGCAGGCAAGTCTCGTC 60.447 63.158 0.00 0.00 0.00 4.20
2991 3809 2.659610 GGAGCAGGCAAGTCTCGT 59.340 61.111 0.00 0.00 0.00 4.18
2992 3810 2.125350 GGGAGCAGGCAAGTCTCG 60.125 66.667 0.00 0.00 0.00 4.04
2993 3811 0.392327 GAAGGGAGCAGGCAAGTCTC 60.392 60.000 0.00 0.00 0.00 3.36
2994 3812 1.682257 GAAGGGAGCAGGCAAGTCT 59.318 57.895 0.00 0.00 0.00 3.24
2995 3813 1.377856 GGAAGGGAGCAGGCAAGTC 60.378 63.158 0.00 0.00 0.00 3.01
2996 3814 2.759795 GGAAGGGAGCAGGCAAGT 59.240 61.111 0.00 0.00 0.00 3.16
2997 3815 2.044551 GGGAAGGGAGCAGGCAAG 60.045 66.667 0.00 0.00 0.00 4.01
2998 3816 2.240918 ATGGGAAGGGAGCAGGCAA 61.241 57.895 0.00 0.00 0.00 4.52
2999 3817 2.614969 ATGGGAAGGGAGCAGGCA 60.615 61.111 0.00 0.00 0.00 4.75
3000 3818 2.123982 CATGGGAAGGGAGCAGGC 60.124 66.667 0.00 0.00 0.00 4.85
3001 3819 2.123982 GCATGGGAAGGGAGCAGG 60.124 66.667 0.00 0.00 0.00 4.85
3002 3820 1.153005 GAGCATGGGAAGGGAGCAG 60.153 63.158 0.00 0.00 0.00 4.24
3003 3821 2.683465 GGAGCATGGGAAGGGAGCA 61.683 63.158 0.00 0.00 0.00 4.26
3004 3822 2.194326 GGAGCATGGGAAGGGAGC 59.806 66.667 0.00 0.00 0.00 4.70
3005 3823 1.358830 ATGGGAGCATGGGAAGGGAG 61.359 60.000 0.00 0.00 0.00 4.30
3006 3824 1.309013 ATGGGAGCATGGGAAGGGA 60.309 57.895 0.00 0.00 0.00 4.20
3007 3825 1.152368 GATGGGAGCATGGGAAGGG 59.848 63.158 0.00 0.00 0.00 3.95
3008 3826 1.152368 GGATGGGAGCATGGGAAGG 59.848 63.158 0.00 0.00 0.00 3.46
3009 3827 1.228063 CGGATGGGAGCATGGGAAG 60.228 63.158 0.00 0.00 0.00 3.46
3010 3828 2.000701 ACGGATGGGAGCATGGGAA 61.001 57.895 0.00 0.00 0.00 3.97
3011 3829 2.366837 ACGGATGGGAGCATGGGA 60.367 61.111 0.00 0.00 0.00 4.37
3012 3830 2.203252 CACGGATGGGAGCATGGG 60.203 66.667 0.00 0.00 0.00 4.00
3013 3831 2.903855 GCACGGATGGGAGCATGG 60.904 66.667 0.00 0.00 0.00 3.66
3014 3832 1.890979 GAGCACGGATGGGAGCATG 60.891 63.158 0.00 0.00 0.00 4.06
3015 3833 2.507944 GAGCACGGATGGGAGCAT 59.492 61.111 0.00 0.00 0.00 3.79
3016 3834 3.785859 GGAGCACGGATGGGAGCA 61.786 66.667 0.00 0.00 0.00 4.26
3017 3835 4.554036 GGGAGCACGGATGGGAGC 62.554 72.222 0.00 0.00 0.00 4.70
3018 3836 4.227134 CGGGAGCACGGATGGGAG 62.227 72.222 0.00 0.00 0.00 4.30
3030 3848 2.173669 CAAGCCACGTATGCGGGAG 61.174 63.158 7.15 0.00 45.97 4.30
3031 3849 1.966901 ATCAAGCCACGTATGCGGGA 61.967 55.000 7.15 6.11 45.97 5.14
3032 3850 1.095228 AATCAAGCCACGTATGCGGG 61.095 55.000 8.39 2.48 43.45 6.13
3033 3851 0.732571 AAATCAAGCCACGTATGCGG 59.267 50.000 8.39 0.00 43.45 5.69
3034 3852 1.396648 TCAAATCAAGCCACGTATGCG 59.603 47.619 0.19 0.19 44.93 4.73
3035 3853 3.698029 ATCAAATCAAGCCACGTATGC 57.302 42.857 1.17 1.17 0.00 3.14
3036 3854 5.233957 TCAATCAAATCAAGCCACGTATG 57.766 39.130 0.00 0.00 0.00 2.39
3037 3855 5.895636 TTCAATCAAATCAAGCCACGTAT 57.104 34.783 0.00 0.00 0.00 3.06
3038 3856 5.009110 TGTTTCAATCAAATCAAGCCACGTA 59.991 36.000 0.00 0.00 0.00 3.57
3039 3857 4.202101 TGTTTCAATCAAATCAAGCCACGT 60.202 37.500 0.00 0.00 0.00 4.49
3040 3858 4.297510 TGTTTCAATCAAATCAAGCCACG 58.702 39.130 0.00 0.00 0.00 4.94
3041 3859 6.601741 TTTGTTTCAATCAAATCAAGCCAC 57.398 33.333 0.00 0.00 31.17 5.01
3042 3860 7.804843 ATTTTGTTTCAATCAAATCAAGCCA 57.195 28.000 0.00 0.00 35.25 4.75
3043 3861 9.815936 CTTATTTTGTTTCAATCAAATCAAGCC 57.184 29.630 0.00 0.00 35.25 4.35
3044 3862 9.815936 CCTTATTTTGTTTCAATCAAATCAAGC 57.184 29.630 0.00 0.00 35.25 4.01
3045 3863 9.815936 GCCTTATTTTGTTTCAATCAAATCAAG 57.184 29.630 0.00 2.60 35.25 3.02
3046 3864 8.782144 GGCCTTATTTTGTTTCAATCAAATCAA 58.218 29.630 0.00 0.00 35.25 2.57
3047 3865 7.390162 GGGCCTTATTTTGTTTCAATCAAATCA 59.610 33.333 0.84 0.00 35.25 2.57
3048 3866 7.412891 CGGGCCTTATTTTGTTTCAATCAAATC 60.413 37.037 0.84 0.00 35.25 2.17
3049 3867 6.371271 CGGGCCTTATTTTGTTTCAATCAAAT 59.629 34.615 0.84 0.00 35.25 2.32
3050 3868 5.698545 CGGGCCTTATTTTGTTTCAATCAAA 59.301 36.000 0.84 0.00 33.76 2.69
3051 3869 5.233988 CGGGCCTTATTTTGTTTCAATCAA 58.766 37.500 0.84 0.00 0.00 2.57
3052 3870 4.322349 CCGGGCCTTATTTTGTTTCAATCA 60.322 41.667 0.84 0.00 0.00 2.57
3053 3871 4.180817 CCGGGCCTTATTTTGTTTCAATC 58.819 43.478 0.84 0.00 0.00 2.67
3054 3872 3.618752 GCCGGGCCTTATTTTGTTTCAAT 60.619 43.478 8.12 0.00 0.00 2.57
3055 3873 2.289133 GCCGGGCCTTATTTTGTTTCAA 60.289 45.455 8.12 0.00 0.00 2.69
3056 3874 1.273886 GCCGGGCCTTATTTTGTTTCA 59.726 47.619 8.12 0.00 0.00 2.69
3057 3875 1.548719 AGCCGGGCCTTATTTTGTTTC 59.451 47.619 17.02 0.00 0.00 2.78
3058 3876 1.548719 GAGCCGGGCCTTATTTTGTTT 59.451 47.619 17.02 0.00 0.00 2.83
3059 3877 1.182667 GAGCCGGGCCTTATTTTGTT 58.817 50.000 17.02 0.00 0.00 2.83
3060 3878 0.683179 GGAGCCGGGCCTTATTTTGT 60.683 55.000 17.02 0.00 0.00 2.83
3061 3879 0.682855 TGGAGCCGGGCCTTATTTTG 60.683 55.000 17.02 0.00 0.00 2.44
3062 3880 0.261696 ATGGAGCCGGGCCTTATTTT 59.738 50.000 17.02 0.00 0.00 1.82
3063 3881 0.178990 GATGGAGCCGGGCCTTATTT 60.179 55.000 17.02 0.00 0.00 1.40
3064 3882 1.456287 GATGGAGCCGGGCCTTATT 59.544 57.895 17.02 0.00 0.00 1.40
3065 3883 2.529744 GGATGGAGCCGGGCCTTAT 61.530 63.158 17.02 7.32 0.00 1.73
3066 3884 3.168528 GGATGGAGCCGGGCCTTA 61.169 66.667 17.02 1.83 0.00 2.69
3071 3889 1.641552 TTTAAGGGGATGGAGCCGGG 61.642 60.000 2.18 0.00 0.00 5.73
3072 3890 0.257616 TTTTAAGGGGATGGAGCCGG 59.742 55.000 0.00 0.00 0.00 6.13
3073 3891 2.230660 GATTTTAAGGGGATGGAGCCG 58.769 52.381 0.00 0.00 0.00 5.52
3074 3892 3.225940 CTGATTTTAAGGGGATGGAGCC 58.774 50.000 0.00 0.00 0.00 4.70
3075 3893 3.225940 CCTGATTTTAAGGGGATGGAGC 58.774 50.000 0.00 0.00 0.00 4.70
3121 3939 6.235664 TCCTACGGCTGTATTTTCTCTTTTT 58.764 36.000 5.70 0.00 0.00 1.94
3122 3940 5.801380 TCCTACGGCTGTATTTTCTCTTTT 58.199 37.500 5.70 0.00 0.00 2.27
3123 3941 5.416271 TCCTACGGCTGTATTTTCTCTTT 57.584 39.130 5.70 0.00 0.00 2.52
3124 3942 5.128827 TCATCCTACGGCTGTATTTTCTCTT 59.871 40.000 5.70 0.00 0.00 2.85
3125 3943 4.649674 TCATCCTACGGCTGTATTTTCTCT 59.350 41.667 5.70 0.00 0.00 3.10
3126 3944 4.945246 TCATCCTACGGCTGTATTTTCTC 58.055 43.478 5.70 0.00 0.00 2.87
3127 3945 5.163301 ACATCATCCTACGGCTGTATTTTCT 60.163 40.000 5.70 0.00 0.00 2.52
3128 3946 5.050091 CACATCATCCTACGGCTGTATTTTC 60.050 44.000 5.70 0.00 0.00 2.29
3129 3947 4.816385 CACATCATCCTACGGCTGTATTTT 59.184 41.667 5.70 0.00 0.00 1.82
3130 3948 4.380531 CACATCATCCTACGGCTGTATTT 58.619 43.478 5.70 0.00 0.00 1.40
3131 3949 3.244215 CCACATCATCCTACGGCTGTATT 60.244 47.826 5.70 0.00 0.00 1.89
3132 3950 2.300152 CCACATCATCCTACGGCTGTAT 59.700 50.000 5.70 0.00 0.00 2.29
3133 3951 1.686587 CCACATCATCCTACGGCTGTA 59.313 52.381 5.05 5.05 0.00 2.74
3134 3952 0.465705 CCACATCATCCTACGGCTGT 59.534 55.000 2.42 2.42 0.00 4.40
3135 3953 0.250038 CCCACATCATCCTACGGCTG 60.250 60.000 0.00 0.00 0.00 4.85
3136 3954 0.398522 TCCCACATCATCCTACGGCT 60.399 55.000 0.00 0.00 0.00 5.52
3137 3955 0.034059 CTCCCACATCATCCTACGGC 59.966 60.000 0.00 0.00 0.00 5.68
3138 3956 0.034059 GCTCCCACATCATCCTACGG 59.966 60.000 0.00 0.00 0.00 4.02
3139 3957 0.752658 TGCTCCCACATCATCCTACG 59.247 55.000 0.00 0.00 0.00 3.51
3140 3958 2.369860 TCATGCTCCCACATCATCCTAC 59.630 50.000 0.00 0.00 0.00 3.18
3141 3959 2.693210 TCATGCTCCCACATCATCCTA 58.307 47.619 0.00 0.00 0.00 2.94
3142 3960 1.514983 TCATGCTCCCACATCATCCT 58.485 50.000 0.00 0.00 0.00 3.24
3143 3961 2.158711 TCTTCATGCTCCCACATCATCC 60.159 50.000 0.00 0.00 0.00 3.51
3144 3962 3.139850 CTCTTCATGCTCCCACATCATC 58.860 50.000 0.00 0.00 0.00 2.92
3145 3963 2.158652 CCTCTTCATGCTCCCACATCAT 60.159 50.000 0.00 0.00 0.00 2.45
3146 3964 1.211212 CCTCTTCATGCTCCCACATCA 59.789 52.381 0.00 0.00 0.00 3.07
3147 3965 1.476471 CCCTCTTCATGCTCCCACATC 60.476 57.143 0.00 0.00 0.00 3.06
3148 3966 0.549950 CCCTCTTCATGCTCCCACAT 59.450 55.000 0.00 0.00 0.00 3.21
3149 3967 0.547471 TCCCTCTTCATGCTCCCACA 60.547 55.000 0.00 0.00 0.00 4.17
3150 3968 0.179936 CTCCCTCTTCATGCTCCCAC 59.820 60.000 0.00 0.00 0.00 4.61
3151 3969 1.630126 GCTCCCTCTTCATGCTCCCA 61.630 60.000 0.00 0.00 0.00 4.37
3152 3970 1.148048 GCTCCCTCTTCATGCTCCC 59.852 63.158 0.00 0.00 0.00 4.30
3153 3971 0.179051 CTGCTCCCTCTTCATGCTCC 60.179 60.000 0.00 0.00 0.00 4.70
3154 3972 0.179051 CCTGCTCCCTCTTCATGCTC 60.179 60.000 0.00 0.00 0.00 4.26
3155 3973 1.913722 CCTGCTCCCTCTTCATGCT 59.086 57.895 0.00 0.00 0.00 3.79
3156 3974 1.823041 GCCTGCTCCCTCTTCATGC 60.823 63.158 0.00 0.00 0.00 4.06
3157 3975 0.034767 TTGCCTGCTCCCTCTTCATG 60.035 55.000 0.00 0.00 0.00 3.07
3158 3976 0.700564 TTTGCCTGCTCCCTCTTCAT 59.299 50.000 0.00 0.00 0.00 2.57
3159 3977 0.250901 GTTTGCCTGCTCCCTCTTCA 60.251 55.000 0.00 0.00 0.00 3.02
3160 3978 0.962855 GGTTTGCCTGCTCCCTCTTC 60.963 60.000 0.00 0.00 0.00 2.87
3161 3979 1.075659 GGTTTGCCTGCTCCCTCTT 59.924 57.895 0.00 0.00 0.00 2.85
3162 3980 2.759795 GGTTTGCCTGCTCCCTCT 59.240 61.111 0.00 0.00 0.00 3.69
3163 3981 2.747855 CGGTTTGCCTGCTCCCTC 60.748 66.667 0.00 0.00 0.00 4.30
3164 3982 4.351054 CCGGTTTGCCTGCTCCCT 62.351 66.667 0.00 0.00 0.00 4.20
3165 3983 3.645268 ATCCGGTTTGCCTGCTCCC 62.645 63.158 0.00 0.00 0.00 4.30
3166 3984 2.044946 ATCCGGTTTGCCTGCTCC 60.045 61.111 0.00 0.00 0.00 4.70
3167 3985 2.115291 GGATCCGGTTTGCCTGCTC 61.115 63.158 0.00 0.00 0.00 4.26
3168 3986 2.044946 GGATCCGGTTTGCCTGCT 60.045 61.111 0.00 0.00 0.00 4.24
3169 3987 0.393808 TAAGGATCCGGTTTGCCTGC 60.394 55.000 5.98 0.00 0.00 4.85
3170 3988 2.158755 AGATAAGGATCCGGTTTGCCTG 60.159 50.000 5.98 0.00 31.81 4.85
3171 3989 2.127708 AGATAAGGATCCGGTTTGCCT 58.872 47.619 5.98 0.94 31.81 4.75
3172 3990 2.222027 CAGATAAGGATCCGGTTTGCC 58.778 52.381 5.98 0.00 31.81 4.52
3173 3991 2.222027 CCAGATAAGGATCCGGTTTGC 58.778 52.381 5.98 0.00 31.81 3.68
3174 3992 3.118408 TGACCAGATAAGGATCCGGTTTG 60.118 47.826 5.98 2.90 42.06 2.93
3175 3993 3.112263 TGACCAGATAAGGATCCGGTTT 58.888 45.455 5.98 0.00 42.06 3.27
3176 3994 2.759355 TGACCAGATAAGGATCCGGTT 58.241 47.619 5.98 0.00 42.06 4.44
3177 3995 2.471815 TGACCAGATAAGGATCCGGT 57.528 50.000 5.98 6.26 44.27 5.28
3178 3996 5.395768 GGATAATGACCAGATAAGGATCCGG 60.396 48.000 5.98 0.00 35.92 5.14
3179 3997 5.423610 AGGATAATGACCAGATAAGGATCCG 59.576 44.000 5.98 0.00 34.10 4.18
3180 3998 6.671779 AGAGGATAATGACCAGATAAGGATCC 59.328 42.308 2.48 2.48 31.81 3.36
3181 3999 7.147742 GGAGAGGATAATGACCAGATAAGGATC 60.148 44.444 0.00 0.00 0.00 3.36
3182 4000 6.671779 GGAGAGGATAATGACCAGATAAGGAT 59.328 42.308 0.00 0.00 0.00 3.24
3183 4001 6.019748 GGAGAGGATAATGACCAGATAAGGA 58.980 44.000 0.00 0.00 0.00 3.36
3184 4002 6.022315 AGGAGAGGATAATGACCAGATAAGG 58.978 44.000 0.00 0.00 0.00 2.69
3185 4003 7.310361 GGAAGGAGAGGATAATGACCAGATAAG 60.310 44.444 0.00 0.00 0.00 1.73
3190 4008 4.230455 AGGAAGGAGAGGATAATGACCAG 58.770 47.826 0.00 0.00 0.00 4.00
3216 4034 5.288804 TGGAAAGAGAATTTCGCAAAAAGG 58.711 37.500 2.95 0.00 0.00 3.11
3270 4088 5.420739 AGCGGGCATAAATAAGGAAAAAGAA 59.579 36.000 0.00 0.00 0.00 2.52
3334 4158 7.805071 CGAGAATTAATGATAACAAAGATGGCC 59.195 37.037 0.00 0.00 0.00 5.36
3347 4171 4.696479 AGCCACCTCGAGAATTAATGAT 57.304 40.909 15.71 0.00 0.00 2.45
3348 4172 4.487714 AAGCCACCTCGAGAATTAATGA 57.512 40.909 15.71 0.00 0.00 2.57
3401 6744 1.822990 TGCTTTAGGATCCGTTCGACT 59.177 47.619 5.98 0.00 0.00 4.18
3414 6757 1.204941 AGTACCACCTCGCTGCTTTAG 59.795 52.381 0.00 0.00 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.