Multiple sequence alignment - TraesCS6A01G334800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G334800 chr6A 100.000 3182 0 0 1 3182 565390691 565393872 0.000000e+00 5877
1 TraesCS6A01G334800 chr6A 82.558 688 68 34 2409 3056 565415718 565416393 2.770000e-155 558
2 TraesCS6A01G334800 chr6A 87.156 109 13 1 2 109 555203373 555203265 4.310000e-24 122
3 TraesCS6A01G334800 chr6D 86.852 1833 92 54 451 2221 422610458 422612203 0.000000e+00 1912
4 TraesCS6A01G334800 chr6D 85.714 714 67 15 2415 3100 422612173 422612879 0.000000e+00 721
5 TraesCS6A01G334800 chr6B 89.593 1499 72 32 757 2241 636877980 636879408 0.000000e+00 1827
6 TraesCS6A01G334800 chr6B 86.494 696 61 18 2420 3097 636879363 636880043 0.000000e+00 734
7 TraesCS6A01G334800 chr6B 82.825 623 66 23 97 689 636877331 636877942 1.310000e-143 520
8 TraesCS6A01G334800 chr7B 89.908 109 10 1 2 109 347977080 347976972 4.280000e-29 139
9 TraesCS6A01G334800 chr3B 89.908 109 10 1 4 111 13346458 13346350 4.280000e-29 139
10 TraesCS6A01G334800 chr3A 89.524 105 10 1 6 109 123046941 123046837 7.160000e-27 132
11 TraesCS6A01G334800 chr5A 87.963 108 13 0 4 111 432933089 432932982 9.260000e-26 128
12 TraesCS6A01G334800 chr5A 87.156 109 13 1 4 111 580927900 580927792 4.310000e-24 122
13 TraesCS6A01G334800 chr1B 87.500 112 13 1 1 111 40440391 40440502 9.260000e-26 128
14 TraesCS6A01G334800 chr3D 88.462 104 11 1 4 106 402494735 402494632 1.200000e-24 124
15 TraesCS6A01G334800 chr7A 86.364 110 14 1 4 112 195135908 195136017 5.580000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G334800 chr6A 565390691 565393872 3181 False 5877.0 5877 100.000 1 3182 1 chr6A.!!$F1 3181
1 TraesCS6A01G334800 chr6A 565415718 565416393 675 False 558.0 558 82.558 2409 3056 1 chr6A.!!$F2 647
2 TraesCS6A01G334800 chr6D 422610458 422612879 2421 False 1316.5 1912 86.283 451 3100 2 chr6D.!!$F1 2649
3 TraesCS6A01G334800 chr6B 636877331 636880043 2712 False 1027.0 1827 86.304 97 3097 3 chr6B.!!$F1 3000

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
226 230 0.036294 AAGGCCGAGGTAAACTGCTC 60.036 55.0 0.00 0.0 0.00 4.26 F
1534 1592 0.038892 GTGAGTCAACGGCGACCTTA 60.039 55.0 16.62 0.0 36.52 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2076 2148 0.173255 AGCAATTTGGCGTACATGGC 59.827 50.0 0.0 0.0 39.27 4.40 R
2606 2690 0.538584 TGCTGATGATGGCGACTCTT 59.461 50.0 0.0 0.0 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.291293 CTACCGACCCAAATACAAAACTG 57.709 43.478 0.00 0.00 0.00 3.16
23 24 2.888414 ACCGACCCAAATACAAAACTGG 59.112 45.455 0.00 0.00 0.00 4.00
24 25 3.150767 CCGACCCAAATACAAAACTGGA 58.849 45.455 0.00 0.00 0.00 3.86
25 26 3.057806 CCGACCCAAATACAAAACTGGAC 60.058 47.826 0.00 0.00 0.00 4.02
26 27 3.364565 CGACCCAAATACAAAACTGGACG 60.365 47.826 0.00 0.00 0.00 4.79
27 28 2.888414 ACCCAAATACAAAACTGGACGG 59.112 45.455 0.00 0.00 0.00 4.79
28 29 3.150767 CCCAAATACAAAACTGGACGGA 58.849 45.455 0.00 0.00 0.00 4.69
29 30 3.057806 CCCAAATACAAAACTGGACGGAC 60.058 47.826 0.00 0.00 0.00 4.79
30 31 3.364565 CCAAATACAAAACTGGACGGACG 60.365 47.826 0.00 0.00 0.00 4.79
31 32 1.435577 ATACAAAACTGGACGGACGC 58.564 50.000 0.00 0.00 0.00 5.19
32 33 0.600782 TACAAAACTGGACGGACGCC 60.601 55.000 0.00 0.00 0.00 5.68
56 57 3.122323 GCGGCCGATCCAAACGAA 61.122 61.111 33.48 0.00 34.01 3.85
57 58 2.782615 CGGCCGATCCAAACGAAC 59.217 61.111 24.07 0.00 34.01 3.95
58 59 2.030401 CGGCCGATCCAAACGAACA 61.030 57.895 24.07 0.00 34.01 3.18
59 60 1.570347 CGGCCGATCCAAACGAACAA 61.570 55.000 24.07 0.00 34.01 2.83
60 61 0.594110 GGCCGATCCAAACGAACAAA 59.406 50.000 0.00 0.00 34.01 2.83
61 62 1.001158 GGCCGATCCAAACGAACAAAA 60.001 47.619 0.00 0.00 34.01 2.44
62 63 2.544069 GGCCGATCCAAACGAACAAAAA 60.544 45.455 0.00 0.00 34.01 1.94
91 92 2.052590 CGTTGTGCGTTTGGTCGG 60.053 61.111 0.00 0.00 35.54 4.79
92 93 2.815298 CGTTGTGCGTTTGGTCGGT 61.815 57.895 0.00 0.00 35.54 4.69
93 94 1.010462 GTTGTGCGTTTGGTCGGTC 60.010 57.895 0.00 0.00 0.00 4.79
94 95 2.181521 TTGTGCGTTTGGTCGGTCC 61.182 57.895 0.00 0.00 0.00 4.46
95 96 3.708734 GTGCGTTTGGTCGGTCCG 61.709 66.667 4.39 4.39 39.52 4.79
96 97 4.224274 TGCGTTTGGTCGGTCCGT 62.224 61.111 11.88 0.00 39.52 4.69
97 98 2.968697 GCGTTTGGTCGGTCCGTT 60.969 61.111 11.88 0.00 39.52 4.44
98 99 2.932905 CGTTTGGTCGGTCCGTTG 59.067 61.111 11.88 0.00 39.52 4.10
99 100 2.600475 CGTTTGGTCGGTCCGTTGG 61.600 63.158 11.88 0.00 39.52 3.77
100 101 1.227615 GTTTGGTCGGTCCGTTGGA 60.228 57.895 11.88 0.00 39.52 3.53
101 102 1.070105 TTTGGTCGGTCCGTTGGAG 59.930 57.895 11.88 0.00 39.52 3.86
102 103 1.688269 TTTGGTCGGTCCGTTGGAGT 61.688 55.000 11.88 0.00 39.52 3.85
103 104 1.688269 TTGGTCGGTCCGTTGGAGTT 61.688 55.000 11.88 0.00 39.52 3.01
104 105 1.666872 GGTCGGTCCGTTGGAGTTG 60.667 63.158 11.88 0.00 29.39 3.16
105 106 2.029964 TCGGTCCGTTGGAGTTGC 59.970 61.111 11.88 0.00 29.39 4.17
106 107 2.030562 CGGTCCGTTGGAGTTGCT 59.969 61.111 2.08 0.00 29.39 3.91
107 108 2.027625 CGGTCCGTTGGAGTTGCTC 61.028 63.158 2.08 0.00 29.39 4.26
132 133 4.371855 GGCAAGATAAAGCCCACTAAAC 57.628 45.455 0.00 0.00 45.18 2.01
137 138 5.099042 AGATAAAGCCCACTAAACGTGAT 57.901 39.130 0.00 0.00 46.81 3.06
143 144 2.609459 GCCCACTAAACGTGATGATCTG 59.391 50.000 0.00 0.00 46.81 2.90
161 162 3.549997 GTGCGTGCACAACTCAAAT 57.450 47.368 19.45 0.00 45.53 2.32
162 163 1.122849 GTGCGTGCACAACTCAAATG 58.877 50.000 19.45 0.00 45.53 2.32
196 200 7.733773 TGGATATATGTGATATTTCGAGGGT 57.266 36.000 0.00 0.00 0.00 4.34
197 201 8.832458 TGGATATATGTGATATTTCGAGGGTA 57.168 34.615 0.00 0.00 0.00 3.69
203 207 5.730550 TGTGATATTTCGAGGGTATATGCC 58.269 41.667 0.28 0.28 0.00 4.40
208 212 3.916359 TTCGAGGGTATATGCCACAAA 57.084 42.857 12.29 0.00 0.00 2.83
226 230 0.036294 AAGGCCGAGGTAAACTGCTC 60.036 55.000 0.00 0.00 0.00 4.26
247 251 4.376450 CGAATTGTCGCTTTAGGATAGC 57.624 45.455 0.00 0.00 41.08 2.97
248 252 3.802139 CGAATTGTCGCTTTAGGATAGCA 59.198 43.478 0.00 0.00 41.08 3.49
249 253 4.318121 CGAATTGTCGCTTTAGGATAGCAC 60.318 45.833 0.00 0.00 41.08 4.40
250 254 3.603158 TTGTCGCTTTAGGATAGCACA 57.397 42.857 0.00 0.00 38.55 4.57
255 261 5.064707 TGTCGCTTTAGGATAGCACATTTTC 59.935 40.000 0.00 0.00 38.55 2.29
266 272 8.282256 AGGATAGCACATTTTCCCTTATTTAGT 58.718 33.333 0.00 0.00 0.00 2.24
306 313 8.617290 TCCAAGGAAACAACTTTCTAGTTATC 57.383 34.615 0.00 0.00 42.67 1.75
312 319 7.692705 GGAAACAACTTTCTAGTTATCGATTGC 59.307 37.037 1.71 0.00 42.67 3.56
313 320 7.667043 AACAACTTTCTAGTTATCGATTGCA 57.333 32.000 1.71 0.00 42.67 4.08
314 321 7.061752 ACAACTTTCTAGTTATCGATTGCAC 57.938 36.000 1.71 0.00 42.67 4.57
324 331 2.579207 TCGATTGCACTACTAGGCAC 57.421 50.000 0.00 0.00 40.23 5.01
343 350 2.095768 CACATGGTGCGGTACAGAAAAG 60.096 50.000 0.00 0.00 0.00 2.27
373 380 8.783660 AGATCCAAAGTATCTGTATGAAGGTA 57.216 34.615 0.00 0.00 32.44 3.08
374 381 8.643324 AGATCCAAAGTATCTGTATGAAGGTAC 58.357 37.037 0.00 0.00 34.50 3.34
409 416 1.973138 CGACAAGAAAGCCAAGCATG 58.027 50.000 0.00 0.00 0.00 4.06
412 419 0.319083 CAAGAAAGCCAAGCATGCCA 59.681 50.000 15.66 0.00 0.00 4.92
428 435 3.777106 TGCCAGATGAGTCAACTCTTT 57.223 42.857 11.23 0.00 43.25 2.52
429 436 3.405831 TGCCAGATGAGTCAACTCTTTG 58.594 45.455 11.23 6.85 43.25 2.77
431 438 4.067896 GCCAGATGAGTCAACTCTTTGAA 58.932 43.478 11.23 0.00 43.52 2.69
434 441 6.460123 GCCAGATGAGTCAACTCTTTGAAAAA 60.460 38.462 11.23 0.00 43.52 1.94
435 442 7.655490 CCAGATGAGTCAACTCTTTGAAAAAT 58.345 34.615 11.23 0.00 43.52 1.82
501 513 6.583806 GGTTAGTGATTGATTGTGAAAGCAAG 59.416 38.462 0.00 0.00 0.00 4.01
564 589 2.746803 GGGTCAACCGAAATCGCCG 61.747 63.158 0.00 0.00 38.18 6.46
568 593 1.070038 TCAACCGAAATCGCCGTTAC 58.930 50.000 0.00 0.00 38.18 2.50
569 594 0.791422 CAACCGAAATCGCCGTTACA 59.209 50.000 0.00 0.00 38.18 2.41
570 595 1.194997 CAACCGAAATCGCCGTTACAA 59.805 47.619 0.00 0.00 38.18 2.41
594 621 9.868389 CAATTCTTTCAAAAGGCTAATCAAAAC 57.132 29.630 2.83 0.00 36.67 2.43
667 701 1.082104 GCGGTTGCCTTTTCACTCG 60.082 57.895 0.00 0.00 33.98 4.18
670 704 1.193874 CGGTTGCCTTTTCACTCGTAC 59.806 52.381 0.00 0.00 0.00 3.67
674 708 1.076332 GCCTTTTCACTCGTACGCAT 58.924 50.000 11.24 0.00 0.00 4.73
679 713 2.202557 CACTCGTACGCATGCGGA 60.203 61.111 39.95 33.24 44.69 5.54
702 737 6.636044 GGACCTTGATTTAATCGTCGTAGTAG 59.364 42.308 0.23 0.00 0.00 2.57
703 738 7.093322 ACCTTGATTTAATCGTCGTAGTAGT 57.907 36.000 0.23 0.00 0.00 2.73
705 740 8.125448 ACCTTGATTTAATCGTCGTAGTAGTAC 58.875 37.037 0.23 0.00 0.00 2.73
707 742 9.494479 CTTGATTTAATCGTCGTAGTAGTACAA 57.506 33.333 8.43 0.00 0.00 2.41
708 743 9.494479 TTGATTTAATCGTCGTAGTAGTACAAG 57.506 33.333 8.43 0.00 0.00 3.16
709 744 8.882736 TGATTTAATCGTCGTAGTAGTACAAGA 58.117 33.333 8.43 4.32 0.00 3.02
710 745 9.708222 GATTTAATCGTCGTAGTAGTACAAGAA 57.292 33.333 8.43 0.00 0.00 2.52
711 746 8.880768 TTTAATCGTCGTAGTAGTACAAGAAC 57.119 34.615 8.43 0.33 0.00 3.01
712 747 6.734104 AATCGTCGTAGTAGTACAAGAACT 57.266 37.500 8.43 0.00 0.00 3.01
713 748 5.521516 TCGTCGTAGTAGTACAAGAACTG 57.478 43.478 8.43 0.00 0.00 3.16
714 749 4.991056 TCGTCGTAGTAGTACAAGAACTGT 59.009 41.667 8.43 0.00 42.47 3.55
715 750 6.156519 TCGTCGTAGTAGTACAAGAACTGTA 58.843 40.000 8.43 0.00 39.64 2.74
743 778 5.854010 ACCATGATGAGTTATGTCGTACT 57.146 39.130 0.00 0.00 0.00 2.73
744 779 6.954487 ACCATGATGAGTTATGTCGTACTA 57.046 37.500 0.00 0.00 0.00 1.82
745 780 6.736123 ACCATGATGAGTTATGTCGTACTAC 58.264 40.000 0.00 0.00 0.00 2.73
746 781 6.150318 CCATGATGAGTTATGTCGTACTACC 58.850 44.000 0.00 0.00 0.00 3.18
748 783 6.127810 TGATGAGTTATGTCGTACTACCAC 57.872 41.667 0.00 0.00 0.00 4.16
749 784 5.648960 TGATGAGTTATGTCGTACTACCACA 59.351 40.000 0.00 0.00 0.00 4.17
750 785 5.300969 TGAGTTATGTCGTACTACCACAC 57.699 43.478 0.00 0.00 0.00 3.82
754 789 0.592637 TGTCGTACTACCACACCACG 59.407 55.000 0.00 0.00 0.00 4.94
755 790 0.109597 GTCGTACTACCACACCACGG 60.110 60.000 0.00 0.00 33.59 4.94
776 811 7.094549 CCACGGTTCAAAACTGAATATTTCCTA 60.095 37.037 5.69 0.00 40.26 2.94
778 813 6.967199 CGGTTCAAAACTGAATATTTCCTAGC 59.033 38.462 0.00 0.00 40.26 3.42
788 823 6.166279 TGAATATTTCCTAGCTGCGGATTAG 58.834 40.000 7.33 0.00 0.00 1.73
791 826 4.317671 TTTCCTAGCTGCGGATTAGTAC 57.682 45.455 7.33 0.00 0.00 2.73
815 859 4.006780 AGAAACAAACAAATGGGATGGC 57.993 40.909 0.00 0.00 0.00 4.40
816 860 3.390639 AGAAACAAACAAATGGGATGGCA 59.609 39.130 0.00 0.00 0.00 4.92
825 869 2.676471 GGGATGGCAAGCACGGTT 60.676 61.111 0.00 0.00 0.00 4.44
826 870 2.275380 GGGATGGCAAGCACGGTTT 61.275 57.895 0.00 0.00 0.00 3.27
909 953 6.386927 AGTGAGAACAAGGACCCATGATAATA 59.613 38.462 0.00 0.00 0.00 0.98
920 964 8.917088 AGGACCCATGATAATAAAAGTTGAATG 58.083 33.333 0.00 0.00 0.00 2.67
921 965 8.912988 GGACCCATGATAATAAAAGTTGAATGA 58.087 33.333 0.00 0.00 0.00 2.57
924 968 9.918630 CCCATGATAATAAAAGTTGAATGATCC 57.081 33.333 0.00 0.00 0.00 3.36
991 1035 3.891586 GAACGCGACGGCTCACTGA 62.892 63.158 15.93 0.00 36.88 3.41
994 1038 2.505118 GCGACGGCTCACTGACTC 60.505 66.667 0.00 0.00 35.83 3.36
996 1040 2.955402 GACGGCTCACTGACTCGT 59.045 61.111 2.58 2.58 36.74 4.18
1023 1072 4.390264 CTTAAATAAGGAGCCTAGGGTGC 58.610 47.826 23.65 23.65 0.00 5.01
1024 1073 1.141185 AATAAGGAGCCTAGGGTGCC 58.859 55.000 26.75 21.32 34.50 5.01
1042 1091 1.804372 GCCTACCAGCTCATCGTCAAG 60.804 57.143 0.00 0.00 0.00 3.02
1082 1131 2.208431 AGAGTATCGTCGTCGGTTAGG 58.792 52.381 1.55 0.00 42.67 2.69
1184 1233 2.815647 GAAGCTGACCCCTTCGCG 60.816 66.667 0.00 0.00 30.55 5.87
1440 1489 1.884235 CCAACAAGGTCAGTCAGTCC 58.116 55.000 0.00 0.00 0.00 3.85
1444 1494 0.394192 CAAGGTCAGTCAGTCCAGCA 59.606 55.000 0.00 0.00 0.00 4.41
1478 1536 1.625818 TCTTGCTCCTTCCTCTGTTCC 59.374 52.381 0.00 0.00 0.00 3.62
1496 1554 1.005569 TCCGTTCCTCTTCCTCTGCTA 59.994 52.381 0.00 0.00 0.00 3.49
1503 1561 2.235898 CCTCTTCCTCTGCTAGCTTTGT 59.764 50.000 17.23 0.00 0.00 2.83
1509 1567 2.740981 CCTCTGCTAGCTTTGTTGAGTG 59.259 50.000 17.23 3.84 0.00 3.51
1510 1568 2.740981 CTCTGCTAGCTTTGTTGAGTGG 59.259 50.000 17.23 0.00 0.00 4.00
1512 1570 0.523519 GCTAGCTTTGTTGAGTGGGC 59.476 55.000 7.70 0.00 0.00 5.36
1529 1587 2.254350 CGAGTGAGTCAACGGCGA 59.746 61.111 16.62 0.00 0.00 5.54
1530 1588 2.081212 CGAGTGAGTCAACGGCGAC 61.081 63.158 16.62 0.19 36.08 5.19
1531 1589 1.733399 GAGTGAGTCAACGGCGACC 60.733 63.158 16.62 0.00 36.52 4.79
1532 1590 2.143594 GAGTGAGTCAACGGCGACCT 62.144 60.000 16.62 2.63 36.52 3.85
1533 1591 1.300697 GTGAGTCAACGGCGACCTT 60.301 57.895 16.62 0.00 36.52 3.50
1534 1592 0.038892 GTGAGTCAACGGCGACCTTA 60.039 55.000 16.62 0.00 36.52 2.69
1535 1593 0.892755 TGAGTCAACGGCGACCTTAT 59.107 50.000 16.62 0.00 36.52 1.73
1536 1594 1.278238 GAGTCAACGGCGACCTTATG 58.722 55.000 16.62 2.56 36.52 1.90
1537 1595 0.739813 AGTCAACGGCGACCTTATGC 60.740 55.000 16.62 0.00 36.52 3.14
1538 1596 0.739813 GTCAACGGCGACCTTATGCT 60.740 55.000 16.62 0.00 0.00 3.79
1951 2012 1.472188 ACTTCACCGACTAGCTACCC 58.528 55.000 0.00 0.00 0.00 3.69
1952 2013 1.272313 ACTTCACCGACTAGCTACCCA 60.272 52.381 0.00 0.00 0.00 4.51
1953 2014 1.134560 CTTCACCGACTAGCTACCCAC 59.865 57.143 0.00 0.00 0.00 4.61
1954 2015 0.682209 TCACCGACTAGCTACCCACC 60.682 60.000 0.00 0.00 0.00 4.61
1955 2016 0.683504 CACCGACTAGCTACCCACCT 60.684 60.000 0.00 0.00 0.00 4.00
1956 2017 0.921896 ACCGACTAGCTACCCACCTA 59.078 55.000 0.00 0.00 0.00 3.08
1957 2018 1.316651 CCGACTAGCTACCCACCTAC 58.683 60.000 0.00 0.00 0.00 3.18
1958 2019 1.133853 CCGACTAGCTACCCACCTACT 60.134 57.143 0.00 0.00 0.00 2.57
1959 2020 2.220313 CGACTAGCTACCCACCTACTC 58.780 57.143 0.00 0.00 0.00 2.59
1960 2021 2.585330 GACTAGCTACCCACCTACTCC 58.415 57.143 0.00 0.00 0.00 3.85
1963 2024 2.752075 AGCTACCCACCTACTCCTAC 57.248 55.000 0.00 0.00 0.00 3.18
1973 2034 2.715880 ACCTACTCCTACCTAGGTAGCC 59.284 54.545 34.91 0.00 44.80 3.93
1989 2050 4.042187 AGGTAGCCAGCCCAAAATATCTAG 59.958 45.833 0.00 0.00 0.00 2.43
2022 2086 1.448985 AGTTGAACTTGCGTGTGTGT 58.551 45.000 0.00 0.00 0.00 3.72
2039 2103 2.491298 TGTGTGTGTGTTGCAACTTCAT 59.509 40.909 28.61 0.00 0.00 2.57
2076 2148 7.363968 GCTCTAGCTAGGTACCCCAAAATATAG 60.364 44.444 20.58 5.84 38.21 1.31
2078 2150 4.288887 AGCTAGGTACCCCAAAATATAGCC 59.711 45.833 17.36 5.08 36.01 3.93
2088 2160 3.818210 CCAAAATATAGCCATGTACGCCA 59.182 43.478 0.00 0.00 0.00 5.69
2110 2182 2.762535 TTGCTTGTACTCCTACTGGC 57.237 50.000 0.00 0.00 0.00 4.85
2151 2223 4.747605 GTGTTGCAACGGTGGAATAATTTT 59.252 37.500 23.79 0.00 37.42 1.82
2158 2230 7.175293 TGCAACGGTGGAATAATTTTAAGTACT 59.825 33.333 0.90 0.00 0.00 2.73
2159 2231 8.667463 GCAACGGTGGAATAATTTTAAGTACTA 58.333 33.333 0.90 0.00 0.00 1.82
2160 2232 9.977762 CAACGGTGGAATAATTTTAAGTACTAC 57.022 33.333 0.00 0.00 0.00 2.73
2224 2296 9.667107 TGTTACTCCTCTGATTTAAAATAGGTG 57.333 33.333 0.00 1.31 0.00 4.00
2225 2297 9.668497 GTTACTCCTCTGATTTAAAATAGGTGT 57.332 33.333 14.87 14.87 35.61 4.16
2226 2298 9.886132 TTACTCCTCTGATTTAAAATAGGTGTC 57.114 33.333 14.32 0.00 33.97 3.67
2227 2299 7.042335 ACTCCTCTGATTTAAAATAGGTGTCG 58.958 38.462 0.00 0.00 0.00 4.35
2228 2300 5.815740 TCCTCTGATTTAAAATAGGTGTCGC 59.184 40.000 0.00 0.00 0.00 5.19
2229 2301 5.584649 CCTCTGATTTAAAATAGGTGTCGCA 59.415 40.000 0.00 0.00 0.00 5.10
2230 2302 6.093495 CCTCTGATTTAAAATAGGTGTCGCAA 59.907 38.462 0.00 0.00 0.00 4.85
2231 2303 7.201732 CCTCTGATTTAAAATAGGTGTCGCAAT 60.202 37.037 0.00 0.00 0.00 3.56
2232 2304 8.050778 TCTGATTTAAAATAGGTGTCGCAATT 57.949 30.769 0.00 0.00 0.00 2.32
2233 2305 8.519526 TCTGATTTAAAATAGGTGTCGCAATTT 58.480 29.630 0.00 0.00 0.00 1.82
2234 2306 9.139174 CTGATTTAAAATAGGTGTCGCAATTTT 57.861 29.630 11.27 11.27 36.04 1.82
2245 2317 8.880878 AGGTGTCGCAATTTTAATTTAAAACT 57.119 26.923 14.79 3.47 40.12 2.66
2246 2318 9.968870 AGGTGTCGCAATTTTAATTTAAAACTA 57.031 25.926 14.79 0.00 40.12 2.24
2250 2322 9.683651 GTCGCAATTTTAATTTAAAACTATGGC 57.316 29.630 14.79 8.94 40.12 4.40
2251 2323 9.424319 TCGCAATTTTAATTTAAAACTATGGCA 57.576 25.926 14.79 0.00 40.12 4.92
2252 2324 9.471742 CGCAATTTTAATTTAAAACTATGGCAC 57.528 29.630 14.79 4.38 40.12 5.01
2273 2345 8.405531 TGGCACTTATTTTAGAATATTGACTGC 58.594 33.333 0.00 0.00 0.00 4.40
2274 2346 8.624776 GGCACTTATTTTAGAATATTGACTGCT 58.375 33.333 0.00 0.00 0.00 4.24
2289 2361 5.376854 TGACTGCTTTAAAGAAATCAGGC 57.623 39.130 19.48 17.23 44.02 4.85
2290 2362 5.376854 GACTGCTTTAAAGAAATCAGGCA 57.623 39.130 19.48 6.84 43.48 4.75
2291 2363 5.477984 TGACTGCTTTAAAGAAATCAGGCAT 59.522 36.000 19.36 4.30 46.81 4.40
2292 2364 5.958955 ACTGCTTTAAAGAAATCAGGCATC 58.041 37.500 19.48 0.00 41.21 3.91
2293 2365 5.713861 ACTGCTTTAAAGAAATCAGGCATCT 59.286 36.000 19.48 0.00 41.21 2.90
2294 2366 6.127786 ACTGCTTTAAAGAAATCAGGCATCTC 60.128 38.462 19.48 0.00 41.21 2.75
2295 2367 5.948162 TGCTTTAAAGAAATCAGGCATCTCT 59.052 36.000 19.48 0.00 0.00 3.10
2296 2368 6.094603 TGCTTTAAAGAAATCAGGCATCTCTC 59.905 38.462 19.48 0.00 0.00 3.20
2297 2369 6.459435 GCTTTAAAGAAATCAGGCATCTCTCC 60.459 42.308 19.48 0.00 0.00 3.71
2298 2370 4.581309 AAAGAAATCAGGCATCTCTCCA 57.419 40.909 0.00 0.00 0.00 3.86
2299 2371 4.792513 AAGAAATCAGGCATCTCTCCAT 57.207 40.909 0.00 0.00 0.00 3.41
2300 2372 5.901413 AAGAAATCAGGCATCTCTCCATA 57.099 39.130 0.00 0.00 0.00 2.74
2301 2373 6.451292 AAGAAATCAGGCATCTCTCCATAT 57.549 37.500 0.00 0.00 0.00 1.78
2302 2374 6.052405 AGAAATCAGGCATCTCTCCATATC 57.948 41.667 0.00 0.00 0.00 1.63
2303 2375 4.468765 AATCAGGCATCTCTCCATATCG 57.531 45.455 0.00 0.00 0.00 2.92
2304 2376 2.174360 TCAGGCATCTCTCCATATCGG 58.826 52.381 0.00 0.00 0.00 4.18
2305 2377 2.174360 CAGGCATCTCTCCATATCGGA 58.826 52.381 0.00 0.00 43.61 4.55
2306 2378 2.765135 CAGGCATCTCTCCATATCGGAT 59.235 50.000 0.00 0.00 45.19 4.18
2307 2379 3.197333 CAGGCATCTCTCCATATCGGATT 59.803 47.826 0.00 0.00 45.19 3.01
2308 2380 3.843027 AGGCATCTCTCCATATCGGATTT 59.157 43.478 0.00 0.00 45.19 2.17
2309 2381 4.081198 AGGCATCTCTCCATATCGGATTTC 60.081 45.833 0.00 0.00 45.19 2.17
2310 2382 4.081198 GGCATCTCTCCATATCGGATTTCT 60.081 45.833 0.00 0.00 45.19 2.52
2311 2383 5.486526 GCATCTCTCCATATCGGATTTCTT 58.513 41.667 0.00 0.00 45.19 2.52
2312 2384 5.936956 GCATCTCTCCATATCGGATTTCTTT 59.063 40.000 0.00 0.00 45.19 2.52
2313 2385 6.429385 GCATCTCTCCATATCGGATTTCTTTT 59.571 38.462 0.00 0.00 45.19 2.27
2314 2386 7.040823 GCATCTCTCCATATCGGATTTCTTTTT 60.041 37.037 0.00 0.00 45.19 1.94
2315 2387 8.502387 CATCTCTCCATATCGGATTTCTTTTTC 58.498 37.037 0.00 0.00 45.19 2.29
2316 2388 7.796054 TCTCTCCATATCGGATTTCTTTTTCT 58.204 34.615 0.00 0.00 45.19 2.52
2317 2389 7.928706 TCTCTCCATATCGGATTTCTTTTTCTC 59.071 37.037 0.00 0.00 45.19 2.87
2318 2390 6.992715 TCTCCATATCGGATTTCTTTTTCTCC 59.007 38.462 0.00 0.00 45.19 3.71
2323 2395 3.741805 GGATTTCTTTTTCTCCGACGG 57.258 47.619 7.84 7.84 0.00 4.79
2324 2396 3.072211 GGATTTCTTTTTCTCCGACGGT 58.928 45.455 14.79 0.00 0.00 4.83
2325 2397 3.124806 GGATTTCTTTTTCTCCGACGGTC 59.875 47.826 14.79 0.00 0.00 4.79
2326 2398 2.894763 TTCTTTTTCTCCGACGGTCA 57.105 45.000 14.79 0.00 0.00 4.02
2327 2399 3.396260 TTCTTTTTCTCCGACGGTCAT 57.604 42.857 14.79 0.00 0.00 3.06
2328 2400 3.396260 TCTTTTTCTCCGACGGTCATT 57.604 42.857 14.79 0.00 0.00 2.57
2329 2401 3.064207 TCTTTTTCTCCGACGGTCATTG 58.936 45.455 14.79 0.88 0.00 2.82
2330 2402 2.536761 TTTTCTCCGACGGTCATTGT 57.463 45.000 14.79 0.00 0.00 2.71
2331 2403 2.074547 TTTCTCCGACGGTCATTGTC 57.925 50.000 14.79 0.00 0.00 3.18
2332 2404 1.254026 TTCTCCGACGGTCATTGTCT 58.746 50.000 14.79 0.00 34.17 3.41
2333 2405 0.809385 TCTCCGACGGTCATTGTCTC 59.191 55.000 14.79 0.00 34.17 3.36
2334 2406 0.811915 CTCCGACGGTCATTGTCTCT 59.188 55.000 14.79 0.00 34.17 3.10
2335 2407 0.809385 TCCGACGGTCATTGTCTCTC 59.191 55.000 14.79 0.00 34.17 3.20
2336 2408 0.811915 CCGACGGTCATTGTCTCTCT 59.188 55.000 5.48 0.00 34.17 3.10
2337 2409 1.202200 CCGACGGTCATTGTCTCTCTC 60.202 57.143 5.48 0.00 34.17 3.20
2338 2410 1.202200 CGACGGTCATTGTCTCTCTCC 60.202 57.143 9.10 0.00 34.17 3.71
2339 2411 1.819288 GACGGTCATTGTCTCTCTCCA 59.181 52.381 2.62 0.00 33.54 3.86
2340 2412 2.231478 GACGGTCATTGTCTCTCTCCAA 59.769 50.000 2.62 0.00 33.54 3.53
2341 2413 2.028930 ACGGTCATTGTCTCTCTCCAAC 60.029 50.000 0.00 0.00 0.00 3.77
2342 2414 2.611518 GGTCATTGTCTCTCTCCAACG 58.388 52.381 0.00 0.00 0.00 4.10
2343 2415 2.028930 GGTCATTGTCTCTCTCCAACGT 60.029 50.000 0.00 0.00 0.00 3.99
2344 2416 2.989840 GTCATTGTCTCTCTCCAACGTG 59.010 50.000 0.00 0.00 0.00 4.49
2345 2417 2.628178 TCATTGTCTCTCTCCAACGTGT 59.372 45.455 0.00 0.00 0.00 4.49
2346 2418 2.795175 TTGTCTCTCTCCAACGTGTC 57.205 50.000 0.00 0.00 0.00 3.67
2347 2419 0.591659 TGTCTCTCTCCAACGTGTCG 59.408 55.000 0.00 0.00 0.00 4.35
2348 2420 0.592148 GTCTCTCTCCAACGTGTCGT 59.408 55.000 0.00 0.00 43.97 4.34
2387 2459 7.669089 TGTTCTTAAACAAAGGGAAAAGGAT 57.331 32.000 0.00 0.00 42.34 3.24
2388 2460 8.084985 TGTTCTTAAACAAAGGGAAAAGGATT 57.915 30.769 0.00 0.00 42.34 3.01
2389 2461 9.203163 TGTTCTTAAACAAAGGGAAAAGGATTA 57.797 29.630 0.00 0.00 42.34 1.75
2396 2468 9.613428 AAACAAAGGGAAAAGGATTAAAAGAAG 57.387 29.630 0.00 0.00 0.00 2.85
2397 2469 8.319057 ACAAAGGGAAAAGGATTAAAAGAAGT 57.681 30.769 0.00 0.00 0.00 3.01
2398 2470 8.204160 ACAAAGGGAAAAGGATTAAAAGAAGTG 58.796 33.333 0.00 0.00 0.00 3.16
2399 2471 7.914427 AAGGGAAAAGGATTAAAAGAAGTGT 57.086 32.000 0.00 0.00 0.00 3.55
2400 2472 7.526142 AGGGAAAAGGATTAAAAGAAGTGTC 57.474 36.000 0.00 0.00 0.00 3.67
2401 2473 6.206829 AGGGAAAAGGATTAAAAGAAGTGTCG 59.793 38.462 0.00 0.00 0.00 4.35
2402 2474 6.016527 GGGAAAAGGATTAAAAGAAGTGTCGT 60.017 38.462 0.00 0.00 0.00 4.34
2403 2475 7.076362 GGAAAAGGATTAAAAGAAGTGTCGTC 58.924 38.462 0.00 0.00 0.00 4.20
2404 2476 7.255001 GGAAAAGGATTAAAAGAAGTGTCGTCA 60.255 37.037 0.00 0.00 0.00 4.35
2405 2477 6.787085 AAGGATTAAAAGAAGTGTCGTCAG 57.213 37.500 0.00 0.00 0.00 3.51
2406 2478 6.097915 AGGATTAAAAGAAGTGTCGTCAGA 57.902 37.500 0.00 0.00 0.00 3.27
2435 2508 6.640518 TGGTCATATTTGTTACTCCTCTGAC 58.359 40.000 0.00 0.00 0.00 3.51
2452 2530 4.062293 TCTGACCCAAAATAAGTGTCGTG 58.938 43.478 0.00 0.00 0.00 4.35
2465 2543 9.974980 AAATAAGTGTCGTGAATTTAATTTGGT 57.025 25.926 0.00 0.00 0.00 3.67
2466 2544 8.964420 ATAAGTGTCGTGAATTTAATTTGGTG 57.036 30.769 0.00 0.00 0.00 4.17
2521 2603 2.620585 GAGGCAGTAGCAATTTCCATCC 59.379 50.000 0.00 0.00 44.61 3.51
2522 2604 2.025037 AGGCAGTAGCAATTTCCATCCA 60.025 45.455 0.00 0.00 44.61 3.41
2523 2605 2.760092 GGCAGTAGCAATTTCCATCCAA 59.240 45.455 0.00 0.00 44.61 3.53
2524 2606 3.195396 GGCAGTAGCAATTTCCATCCAAA 59.805 43.478 0.00 0.00 44.61 3.28
2606 2690 5.116180 CGGACAGGCAAAAATACATCTAGA 58.884 41.667 0.00 0.00 0.00 2.43
2619 2703 3.291584 ACATCTAGAAGAGTCGCCATCA 58.708 45.455 1.17 0.00 0.00 3.07
2621 2705 4.022416 ACATCTAGAAGAGTCGCCATCATC 60.022 45.833 1.17 0.00 0.00 2.92
2622 2706 3.555966 TCTAGAAGAGTCGCCATCATCA 58.444 45.455 0.00 0.00 0.00 3.07
2624 2708 1.202510 AGAAGAGTCGCCATCATCAGC 60.203 52.381 0.00 0.00 0.00 4.26
2691 2790 4.065088 TGGAGAGGAAAGTTCACGATTTG 58.935 43.478 0.00 0.00 0.00 2.32
2731 2830 6.006449 AGAATTGGTCCCATGATAACATAGC 58.994 40.000 0.00 0.00 35.09 2.97
2750 2849 6.149474 ACATAGCCAATAATTATGAAGACGCC 59.851 38.462 0.00 0.00 0.00 5.68
2757 2856 4.859629 AATTATGAAGACGCCGAGTTTC 57.140 40.909 0.00 0.00 0.00 2.78
2759 2858 0.320374 ATGAAGACGCCGAGTTTCCA 59.680 50.000 0.00 0.00 0.00 3.53
2761 2860 1.615107 GAAGACGCCGAGTTTCCACG 61.615 60.000 0.00 0.00 0.00 4.94
2774 2873 0.252103 TTCCACGTCCTAGAGGCCTT 60.252 55.000 6.77 0.00 34.44 4.35
2839 2956 7.012044 GCCTATACGACAACAATTAAGTCCAAT 59.988 37.037 0.00 0.00 0.00 3.16
2859 2977 5.868801 CCAATAACACAAACCAATCCACATC 59.131 40.000 0.00 0.00 0.00 3.06
2865 2984 0.608856 AACCAATCCACATCGCTGCA 60.609 50.000 0.00 0.00 0.00 4.41
2899 3029 4.813161 CAGGCATCTCTCGATATTTGTGTT 59.187 41.667 0.00 0.00 0.00 3.32
2904 3034 6.036517 GCATCTCTCGATATTTGTGTTTGACT 59.963 38.462 0.00 0.00 0.00 3.41
2922 3052 3.509184 TGACTGTCATTGTCTCTCTCCAG 59.491 47.826 6.36 0.00 35.63 3.86
3018 3149 7.527084 AGCATAAAATACTTTCACGACTCTC 57.473 36.000 0.00 0.00 0.00 3.20
3047 3178 6.967199 CCTAGCGTTTCCACAAAAATAAGATC 59.033 38.462 0.00 0.00 0.00 2.75
3048 3179 5.709966 AGCGTTTCCACAAAAATAAGATCC 58.290 37.500 0.00 0.00 0.00 3.36
3049 3180 4.557301 GCGTTTCCACAAAAATAAGATCCG 59.443 41.667 0.00 0.00 0.00 4.18
3067 3199 5.940470 AGATCCGATTATTAAGGAACATGGC 59.060 40.000 0.00 0.00 37.62 4.40
3100 3232 7.033791 CCCTCATGATGCAAGCATAAAATATC 58.966 38.462 7.64 0.00 43.92 1.63
3101 3233 7.093902 CCCTCATGATGCAAGCATAAAATATCT 60.094 37.037 7.64 0.00 43.92 1.98
3102 3234 8.953313 CCTCATGATGCAAGCATAAAATATCTA 58.047 33.333 7.64 0.00 43.92 1.98
3103 3235 9.989869 CTCATGATGCAAGCATAAAATATCTAG 57.010 33.333 7.64 0.00 43.92 2.43
3104 3236 8.456471 TCATGATGCAAGCATAAAATATCTAGC 58.544 33.333 7.64 0.00 43.92 3.42
3105 3237 7.149569 TGATGCAAGCATAAAATATCTAGCC 57.850 36.000 7.64 0.00 36.70 3.93
3106 3238 5.964958 TGCAAGCATAAAATATCTAGCCC 57.035 39.130 0.00 0.00 0.00 5.19
3107 3239 5.634118 TGCAAGCATAAAATATCTAGCCCT 58.366 37.500 0.00 0.00 0.00 5.19
3108 3240 5.707298 TGCAAGCATAAAATATCTAGCCCTC 59.293 40.000 0.00 0.00 0.00 4.30
3109 3241 5.942826 GCAAGCATAAAATATCTAGCCCTCT 59.057 40.000 0.00 0.00 0.00 3.69
3110 3242 6.093357 GCAAGCATAAAATATCTAGCCCTCTC 59.907 42.308 0.00 0.00 0.00 3.20
3111 3243 6.942163 AGCATAAAATATCTAGCCCTCTCA 57.058 37.500 0.00 0.00 0.00 3.27
3112 3244 7.321717 AGCATAAAATATCTAGCCCTCTCAA 57.678 36.000 0.00 0.00 0.00 3.02
3113 3245 7.393216 AGCATAAAATATCTAGCCCTCTCAAG 58.607 38.462 0.00 0.00 0.00 3.02
3114 3246 7.236432 AGCATAAAATATCTAGCCCTCTCAAGA 59.764 37.037 0.00 0.00 0.00 3.02
3115 3247 7.333174 GCATAAAATATCTAGCCCTCTCAAGAC 59.667 40.741 0.00 0.00 0.00 3.01
3116 3248 5.816955 AAATATCTAGCCCTCTCAAGACC 57.183 43.478 0.00 0.00 0.00 3.85
3117 3249 2.856760 ATCTAGCCCTCTCAAGACCA 57.143 50.000 0.00 0.00 0.00 4.02
3118 3250 2.623418 TCTAGCCCTCTCAAGACCAA 57.377 50.000 0.00 0.00 0.00 3.67
3119 3251 2.902608 TCTAGCCCTCTCAAGACCAAA 58.097 47.619 0.00 0.00 0.00 3.28
3120 3252 3.248024 TCTAGCCCTCTCAAGACCAAAA 58.752 45.455 0.00 0.00 0.00 2.44
3121 3253 2.575805 AGCCCTCTCAAGACCAAAAG 57.424 50.000 0.00 0.00 0.00 2.27
3122 3254 1.074566 AGCCCTCTCAAGACCAAAAGG 59.925 52.381 0.00 0.00 0.00 3.11
3123 3255 1.888391 GCCCTCTCAAGACCAAAAGGG 60.888 57.143 0.74 0.74 45.23 3.95
3138 3270 5.977635 CCAAAAGGGTAAAATCCTTGATCC 58.022 41.667 0.00 0.00 43.24 3.36
3139 3271 5.104941 CCAAAAGGGTAAAATCCTTGATCCC 60.105 44.000 0.00 0.00 43.24 3.85
3140 3272 3.973472 AGGGTAAAATCCTTGATCCCC 57.027 47.619 0.00 0.00 34.52 4.81
3141 3273 2.518407 AGGGTAAAATCCTTGATCCCCC 59.482 50.000 0.00 0.00 34.52 5.40
3162 3294 4.736896 GCCCCACTCGTCCACGTC 62.737 72.222 0.00 0.00 40.80 4.34
3163 3295 4.415332 CCCCACTCGTCCACGTCG 62.415 72.222 0.00 0.00 40.80 5.12
3164 3296 3.359523 CCCACTCGTCCACGTCGA 61.360 66.667 0.00 0.00 40.80 4.20
3165 3297 2.126965 CCACTCGTCCACGTCGAC 60.127 66.667 5.18 5.18 40.80 4.20
3166 3298 2.126965 CACTCGTCCACGTCGACC 60.127 66.667 10.58 0.00 40.80 4.79
3167 3299 2.592574 ACTCGTCCACGTCGACCA 60.593 61.111 10.58 0.00 40.80 4.02
3168 3300 2.188829 ACTCGTCCACGTCGACCAA 61.189 57.895 10.58 0.00 40.80 3.67
3169 3301 1.008194 CTCGTCCACGTCGACCAAA 60.008 57.895 10.58 0.00 40.80 3.28
3170 3302 1.273455 CTCGTCCACGTCGACCAAAC 61.273 60.000 10.58 2.61 40.80 2.93
3171 3303 1.299620 CGTCCACGTCGACCAAACT 60.300 57.895 10.58 0.00 34.11 2.66
3172 3304 1.545614 CGTCCACGTCGACCAAACTG 61.546 60.000 10.58 0.00 34.11 3.16
3173 3305 1.068417 TCCACGTCGACCAAACTGG 59.932 57.895 10.58 7.20 45.02 4.00
3174 3306 2.604174 CCACGTCGACCAAACTGGC 61.604 63.158 10.58 0.00 42.67 4.85
3175 3307 1.594293 CACGTCGACCAAACTGGCT 60.594 57.895 10.58 0.00 42.67 4.75
3176 3308 1.145377 ACGTCGACCAAACTGGCTT 59.855 52.632 10.58 0.00 42.67 4.35
3177 3309 0.878961 ACGTCGACCAAACTGGCTTC 60.879 55.000 10.58 0.00 42.67 3.86
3178 3310 0.878523 CGTCGACCAAACTGGCTTCA 60.879 55.000 10.58 0.00 42.67 3.02
3179 3311 1.523758 GTCGACCAAACTGGCTTCAT 58.476 50.000 3.51 0.00 42.67 2.57
3180 3312 1.464997 GTCGACCAAACTGGCTTCATC 59.535 52.381 3.51 0.00 42.67 2.92
3181 3313 1.347707 TCGACCAAACTGGCTTCATCT 59.652 47.619 0.00 0.00 42.67 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.155280 CCAGTTTTGTATTTGGGTCGGTAG 59.845 45.833 0.00 0.00 0.00 3.18
2 3 2.888414 CCAGTTTTGTATTTGGGTCGGT 59.112 45.455 0.00 0.00 0.00 4.69
3 4 3.057806 GTCCAGTTTTGTATTTGGGTCGG 60.058 47.826 0.00 0.00 0.00 4.79
5 6 3.057806 CCGTCCAGTTTTGTATTTGGGTC 60.058 47.826 0.00 0.00 0.00 4.46
6 7 2.888414 CCGTCCAGTTTTGTATTTGGGT 59.112 45.455 0.00 0.00 0.00 4.51
7 8 3.057806 GTCCGTCCAGTTTTGTATTTGGG 60.058 47.826 0.00 0.00 0.00 4.12
8 9 3.364565 CGTCCGTCCAGTTTTGTATTTGG 60.365 47.826 0.00 0.00 0.00 3.28
9 10 3.805823 CGTCCGTCCAGTTTTGTATTTG 58.194 45.455 0.00 0.00 0.00 2.32
10 11 2.224784 GCGTCCGTCCAGTTTTGTATTT 59.775 45.455 0.00 0.00 0.00 1.40
11 12 1.802365 GCGTCCGTCCAGTTTTGTATT 59.198 47.619 0.00 0.00 0.00 1.89
12 13 1.435577 GCGTCCGTCCAGTTTTGTAT 58.564 50.000 0.00 0.00 0.00 2.29
13 14 0.600782 GGCGTCCGTCCAGTTTTGTA 60.601 55.000 0.00 0.00 0.00 2.41
14 15 1.890510 GGCGTCCGTCCAGTTTTGT 60.891 57.895 0.00 0.00 0.00 2.83
15 16 2.943653 GGCGTCCGTCCAGTTTTG 59.056 61.111 0.00 0.00 0.00 2.44
16 17 2.663852 CGGCGTCCGTCCAGTTTT 60.664 61.111 9.69 0.00 42.73 2.43
17 18 4.675029 CCGGCGTCCGTCCAGTTT 62.675 66.667 15.38 0.00 46.80 2.66
39 40 3.122323 TTCGTTTGGATCGGCCGC 61.122 61.111 23.51 7.37 40.66 6.53
40 41 1.570347 TTGTTCGTTTGGATCGGCCG 61.570 55.000 22.12 22.12 40.66 6.13
41 42 0.594110 TTTGTTCGTTTGGATCGGCC 59.406 50.000 0.00 0.00 37.10 6.13
42 43 2.409152 TTTTGTTCGTTTGGATCGGC 57.591 45.000 0.00 0.00 0.00 5.54
59 60 4.847217 CGCACAACGTATTTATCCGTTTTT 59.153 37.500 0.00 0.00 44.16 1.94
60 61 4.396519 CGCACAACGTATTTATCCGTTTT 58.603 39.130 0.00 0.00 44.16 2.43
61 62 3.993547 CGCACAACGTATTTATCCGTTT 58.006 40.909 0.00 0.00 44.16 3.60
75 76 1.010462 GACCGACCAAACGCACAAC 60.010 57.895 0.00 0.00 0.00 3.32
76 77 2.181521 GGACCGACCAAACGCACAA 61.182 57.895 0.00 0.00 38.79 3.33
77 78 2.589442 GGACCGACCAAACGCACA 60.589 61.111 0.00 0.00 38.79 4.57
78 79 3.708734 CGGACCGACCAAACGCAC 61.709 66.667 8.64 0.00 38.90 5.34
79 80 3.736732 AACGGACCGACCAAACGCA 62.737 57.895 23.38 0.00 38.90 5.24
80 81 2.968697 AACGGACCGACCAAACGC 60.969 61.111 23.38 0.00 38.90 4.84
81 82 2.600475 CCAACGGACCGACCAAACG 61.600 63.158 23.38 0.08 38.90 3.60
82 83 1.226030 CTCCAACGGACCGACCAAAC 61.226 60.000 23.38 0.00 38.90 2.93
83 84 1.070105 CTCCAACGGACCGACCAAA 59.930 57.895 23.38 0.65 38.90 3.28
84 85 1.688269 AACTCCAACGGACCGACCAA 61.688 55.000 23.38 2.18 38.90 3.67
85 86 2.135581 AACTCCAACGGACCGACCA 61.136 57.895 23.38 0.00 38.90 4.02
86 87 1.666872 CAACTCCAACGGACCGACC 60.667 63.158 23.38 0.00 0.00 4.79
87 88 2.315386 GCAACTCCAACGGACCGAC 61.315 63.158 23.38 0.00 0.00 4.79
88 89 2.029964 GCAACTCCAACGGACCGA 59.970 61.111 23.38 0.00 0.00 4.69
89 90 2.027625 GAGCAACTCCAACGGACCG 61.028 63.158 13.61 13.61 0.00 4.79
90 91 0.250338 AAGAGCAACTCCAACGGACC 60.250 55.000 0.00 0.00 0.00 4.46
91 92 2.338500 CTAAGAGCAACTCCAACGGAC 58.662 52.381 0.00 0.00 0.00 4.79
92 93 1.275291 CCTAAGAGCAACTCCAACGGA 59.725 52.381 0.00 0.00 0.00 4.69
93 94 1.726853 CCTAAGAGCAACTCCAACGG 58.273 55.000 0.00 0.00 0.00 4.44
94 95 1.079503 GCCTAAGAGCAACTCCAACG 58.920 55.000 0.00 0.00 0.00 4.10
95 96 2.185004 TGCCTAAGAGCAACTCCAAC 57.815 50.000 0.00 0.00 40.56 3.77
103 104 3.545703 GGCTTTATCTTGCCTAAGAGCA 58.454 45.455 0.00 0.00 45.53 4.26
104 105 2.881513 GGGCTTTATCTTGCCTAAGAGC 59.118 50.000 3.97 0.00 45.53 4.09
105 106 3.879892 GTGGGCTTTATCTTGCCTAAGAG 59.120 47.826 3.97 0.00 45.53 2.85
127 128 2.923655 ACGCACAGATCATCACGTTTAG 59.076 45.455 0.00 0.00 0.00 1.85
132 133 1.346197 GCACGCACAGATCATCACG 59.654 57.895 0.00 0.00 0.00 4.35
143 144 1.122849 CATTTGAGTTGTGCACGCAC 58.877 50.000 15.20 15.20 46.33 5.34
158 159 9.942850 TCACATATATCCATATTCGACACATTT 57.057 29.630 0.00 0.00 0.00 2.32
185 189 5.554437 TTGTGGCATATACCCTCGAAATA 57.446 39.130 0.00 0.00 0.00 1.40
203 207 1.535462 CAGTTTACCTCGGCCTTTGTG 59.465 52.381 0.00 0.00 0.00 3.33
208 212 1.597461 GAGCAGTTTACCTCGGCCT 59.403 57.895 0.00 0.00 0.00 5.19
236 240 8.697507 ATAAGGGAAAATGTGCTATCCTAAAG 57.302 34.615 0.00 0.00 32.41 1.85
240 244 8.282256 ACTAAATAAGGGAAAATGTGCTATCCT 58.718 33.333 0.00 0.00 32.41 3.24
241 245 8.465273 ACTAAATAAGGGAAAATGTGCTATCC 57.535 34.615 0.00 0.00 0.00 2.59
266 272 8.607713 TGTTTCCTTGGAAGAACAGGTATATTA 58.392 33.333 2.16 0.00 0.00 0.98
268 274 7.027874 TGTTTCCTTGGAAGAACAGGTATAT 57.972 36.000 2.16 0.00 0.00 0.86
276 283 6.208988 AGAAAGTTGTTTCCTTGGAAGAAC 57.791 37.500 13.87 13.87 42.84 3.01
281 288 7.386848 CGATAACTAGAAAGTTGTTTCCTTGGA 59.613 37.037 0.00 0.00 45.63 3.53
282 289 7.386848 TCGATAACTAGAAAGTTGTTTCCTTGG 59.613 37.037 0.00 0.00 45.63 3.61
287 294 8.227791 TGCAATCGATAACTAGAAAGTTGTTTC 58.772 33.333 0.00 0.00 45.63 2.78
306 313 2.293677 TGTGCCTAGTAGTGCAATCG 57.706 50.000 12.97 0.00 39.57 3.34
324 331 1.468520 CCTTTTCTGTACCGCACCATG 59.531 52.381 0.00 0.00 0.00 3.66
343 350 8.410673 TCATACAGATACTTTGGATCTACTCC 57.589 38.462 0.00 0.00 45.19 3.85
366 373 5.130350 CCTTCCTTTGTTTCTGTACCTTCA 58.870 41.667 0.00 0.00 0.00 3.02
367 374 4.023107 GCCTTCCTTTGTTTCTGTACCTTC 60.023 45.833 0.00 0.00 0.00 3.46
373 380 1.947456 GTCGCCTTCCTTTGTTTCTGT 59.053 47.619 0.00 0.00 0.00 3.41
374 381 1.946768 TGTCGCCTTCCTTTGTTTCTG 59.053 47.619 0.00 0.00 0.00 3.02
409 416 3.668447 TCAAAGAGTTGACTCATCTGGC 58.332 45.455 13.20 0.00 45.21 4.85
564 589 9.691362 TGATTAGCCTTTTGAAAGAATTGTAAC 57.309 29.630 5.09 0.00 38.28 2.50
568 593 9.868389 GTTTTGATTAGCCTTTTGAAAGAATTG 57.132 29.630 5.09 0.00 38.28 2.32
569 594 9.836864 AGTTTTGATTAGCCTTTTGAAAGAATT 57.163 25.926 5.09 0.00 38.28 2.17
570 595 9.264719 CAGTTTTGATTAGCCTTTTGAAAGAAT 57.735 29.630 5.09 0.00 38.28 2.40
619 646 4.200838 TGCATGGTCGTAGAAAGATCAA 57.799 40.909 0.00 0.00 39.69 2.57
667 701 0.810031 ATCAAGGTCCGCATGCGTAC 60.810 55.000 35.55 30.69 37.81 3.67
670 704 1.013596 TAAATCAAGGTCCGCATGCG 58.986 50.000 32.60 32.60 39.44 4.73
674 708 2.933906 GACGATTAAATCAAGGTCCGCA 59.066 45.455 0.00 0.00 0.00 5.69
679 713 7.093322 ACTACTACGACGATTAAATCAAGGT 57.907 36.000 0.00 0.00 0.00 3.50
680 714 8.124823 TGTACTACTACGACGATTAAATCAAGG 58.875 37.037 0.00 0.00 0.00 3.61
683 717 8.882736 TCTTGTACTACTACGACGATTAAATCA 58.117 33.333 0.00 0.00 0.00 2.57
705 740 9.254133 CTCATCATGGTATTAGTACAGTTCTTG 57.746 37.037 0.00 0.00 32.25 3.02
707 742 8.540507 ACTCATCATGGTATTAGTACAGTTCT 57.459 34.615 0.00 0.00 32.25 3.01
713 748 9.343103 CGACATAACTCATCATGGTATTAGTAC 57.657 37.037 0.00 0.00 0.00 2.73
714 749 9.074576 ACGACATAACTCATCATGGTATTAGTA 57.925 33.333 0.00 0.00 0.00 1.82
715 750 7.952671 ACGACATAACTCATCATGGTATTAGT 58.047 34.615 0.00 0.00 0.00 2.24
716 751 9.343103 GTACGACATAACTCATCATGGTATTAG 57.657 37.037 0.00 0.00 0.00 1.73
717 752 9.074576 AGTACGACATAACTCATCATGGTATTA 57.925 33.333 0.00 0.00 0.00 0.98
718 753 7.952671 AGTACGACATAACTCATCATGGTATT 58.047 34.615 0.00 0.00 0.00 1.89
719 754 7.526142 AGTACGACATAACTCATCATGGTAT 57.474 36.000 0.00 0.00 0.00 2.73
720 755 6.954487 AGTACGACATAACTCATCATGGTA 57.046 37.500 0.00 0.00 0.00 3.25
721 756 5.854010 AGTACGACATAACTCATCATGGT 57.146 39.130 0.00 0.00 0.00 3.55
722 757 6.150318 GGTAGTACGACATAACTCATCATGG 58.850 44.000 8.44 0.00 0.00 3.66
723 758 6.637254 GTGGTAGTACGACATAACTCATCATG 59.363 42.308 10.27 0.00 0.00 3.07
724 759 6.320418 TGTGGTAGTACGACATAACTCATCAT 59.680 38.462 13.48 0.00 31.86 2.45
725 760 5.648960 TGTGGTAGTACGACATAACTCATCA 59.351 40.000 13.48 0.00 31.86 3.07
726 761 5.970023 GTGTGGTAGTACGACATAACTCATC 59.030 44.000 19.35 2.73 38.99 2.92
734 769 1.200716 CGTGGTGTGGTAGTACGACAT 59.799 52.381 19.35 0.00 38.99 3.06
735 770 0.592637 CGTGGTGTGGTAGTACGACA 59.407 55.000 13.48 13.48 34.44 4.35
743 778 2.015587 GTTTTGAACCGTGGTGTGGTA 58.984 47.619 0.00 0.00 39.29 3.25
744 779 0.812549 GTTTTGAACCGTGGTGTGGT 59.187 50.000 0.00 0.00 42.98 4.16
745 780 1.099689 AGTTTTGAACCGTGGTGTGG 58.900 50.000 0.00 0.00 0.00 4.17
746 781 1.740585 TCAGTTTTGAACCGTGGTGTG 59.259 47.619 0.00 0.00 0.00 3.82
748 783 3.708563 ATTCAGTTTTGAACCGTGGTG 57.291 42.857 0.00 0.00 45.54 4.17
749 784 6.399639 AAATATTCAGTTTTGAACCGTGGT 57.600 33.333 0.00 0.00 45.54 4.16
750 785 5.861787 GGAAATATTCAGTTTTGAACCGTGG 59.138 40.000 0.00 0.00 45.54 4.94
754 789 7.970614 CAGCTAGGAAATATTCAGTTTTGAACC 59.029 37.037 0.00 0.00 45.54 3.62
755 790 7.486232 GCAGCTAGGAAATATTCAGTTTTGAAC 59.514 37.037 0.00 0.00 45.54 3.18
776 811 5.105473 TGTTTCTTAGTACTAATCCGCAGCT 60.105 40.000 15.57 0.00 0.00 4.24
778 813 7.117236 TGTTTGTTTCTTAGTACTAATCCGCAG 59.883 37.037 15.57 3.43 0.00 5.18
788 823 7.812669 CCATCCCATTTGTTTGTTTCTTAGTAC 59.187 37.037 0.00 0.00 0.00 2.73
791 826 5.639082 GCCATCCCATTTGTTTGTTTCTTAG 59.361 40.000 0.00 0.00 0.00 2.18
807 851 2.992817 AAACCGTGCTTGCCATCCCA 62.993 55.000 0.00 0.00 0.00 4.37
808 852 2.275380 AAACCGTGCTTGCCATCCC 61.275 57.895 0.00 0.00 0.00 3.85
815 859 2.051345 GGCGACAAACCGTGCTTG 60.051 61.111 0.00 0.00 0.00 4.01
816 860 1.782028 GAAGGCGACAAACCGTGCTT 61.782 55.000 0.00 0.00 0.00 3.91
825 869 2.357034 GGTGAGCGAAGGCGACAA 60.357 61.111 0.00 0.00 46.35 3.18
826 870 3.611674 TGGTGAGCGAAGGCGACA 61.612 61.111 0.00 0.00 46.35 4.35
909 953 4.096984 GCTGGATCGGATCATTCAACTTTT 59.903 41.667 18.99 0.00 0.00 2.27
924 968 3.869272 GTGCTTGCCGCTGGATCG 61.869 66.667 0.00 0.00 40.11 3.69
934 978 4.152625 CTAGTGCGCCGTGCTTGC 62.153 66.667 4.18 0.00 46.63 4.01
973 1017 3.470567 CAGTGAGCCGTCGCGTTC 61.471 66.667 5.77 0.00 41.18 3.95
979 1023 1.154188 GACGAGTCAGTGAGCCGTC 60.154 63.158 23.01 23.01 41.85 4.79
980 1024 2.955402 GACGAGTCAGTGAGCCGT 59.045 61.111 16.65 16.65 36.08 5.68
982 1026 1.442857 CACGACGAGTCAGTGAGCC 60.443 63.158 16.97 0.00 36.76 4.70
991 1035 4.421948 CTCCTTATTTAAGCACGACGAGT 58.578 43.478 0.00 0.00 32.02 4.18
994 1038 2.284417 GGCTCCTTATTTAAGCACGACG 59.716 50.000 0.00 0.00 37.78 5.12
996 1040 3.906720 AGGCTCCTTATTTAAGCACGA 57.093 42.857 0.00 0.00 37.78 4.35
1023 1072 1.804372 GCTTGACGATGAGCTGGTAGG 60.804 57.143 0.00 0.00 36.01 3.18
1024 1073 1.565305 GCTTGACGATGAGCTGGTAG 58.435 55.000 0.00 0.00 36.01 3.18
1042 1091 0.230769 CGGATTCGATCTGCTTTCGC 59.769 55.000 0.00 0.00 39.00 4.70
1061 1110 2.220593 CCTAACCGACGACGATACTCTC 59.779 54.545 9.28 0.00 42.66 3.20
1065 1114 0.655626 CGCCTAACCGACGACGATAC 60.656 60.000 9.28 0.00 42.66 2.24
1070 1119 2.575262 CGACGCCTAACCGACGAC 60.575 66.667 0.00 0.00 46.04 4.34
1100 1149 3.066190 CCATGGTGCTGGTGCTGG 61.066 66.667 2.57 0.00 40.48 4.85
1101 1150 3.755628 GCCATGGTGCTGGTGCTG 61.756 66.667 14.67 0.00 38.63 4.41
1102 1151 4.289101 TGCCATGGTGCTGGTGCT 62.289 61.111 14.67 0.00 38.63 4.40
1103 1152 3.755628 CTGCCATGGTGCTGGTGC 61.756 66.667 14.67 0.00 38.63 5.01
1191 1240 2.282180 CCACCGAACCCAACCCTG 60.282 66.667 0.00 0.00 0.00 4.45
1196 1245 4.278513 CCCTGCCACCGAACCCAA 62.279 66.667 0.00 0.00 0.00 4.12
1438 1487 4.914983 AGAAAGATTCATCACTTGCTGGA 58.085 39.130 0.00 0.00 31.59 3.86
1440 1489 4.857588 GCAAGAAAGATTCATCACTTGCTG 59.142 41.667 23.48 5.45 45.40 4.41
1444 1494 5.568392 AGGAGCAAGAAAGATTCATCACTT 58.432 37.500 0.00 0.00 0.00 3.16
1478 1536 1.202359 GCTAGCAGAGGAAGAGGAACG 60.202 57.143 10.63 0.00 0.00 3.95
1496 1554 0.886490 CTCGCCCACTCAACAAAGCT 60.886 55.000 0.00 0.00 0.00 3.74
1503 1561 1.112916 TGACTCACTCGCCCACTCAA 61.113 55.000 0.00 0.00 0.00 3.02
1509 1567 2.432628 CCGTTGACTCACTCGCCC 60.433 66.667 0.00 0.00 0.00 6.13
1510 1568 3.112709 GCCGTTGACTCACTCGCC 61.113 66.667 0.00 0.00 0.00 5.54
1512 1570 2.081212 GTCGCCGTTGACTCACTCG 61.081 63.158 0.00 0.00 35.95 4.18
1529 1587 2.039746 TGTACACCTGCAAGCATAAGGT 59.960 45.455 0.00 0.00 45.32 3.50
1530 1588 2.710377 TGTACACCTGCAAGCATAAGG 58.290 47.619 0.00 0.00 37.11 2.69
1531 1589 3.424829 CGTTGTACACCTGCAAGCATAAG 60.425 47.826 0.00 0.00 0.00 1.73
1532 1590 2.482336 CGTTGTACACCTGCAAGCATAA 59.518 45.455 0.00 0.00 0.00 1.90
1533 1591 2.073056 CGTTGTACACCTGCAAGCATA 58.927 47.619 0.00 0.00 0.00 3.14
1534 1592 0.874390 CGTTGTACACCTGCAAGCAT 59.126 50.000 0.00 0.00 0.00 3.79
1535 1593 1.163420 CCGTTGTACACCTGCAAGCA 61.163 55.000 0.00 0.00 0.00 3.91
1536 1594 1.574428 CCGTTGTACACCTGCAAGC 59.426 57.895 0.00 0.00 0.00 4.01
1537 1595 0.250124 TCCCGTTGTACACCTGCAAG 60.250 55.000 0.00 0.00 0.00 4.01
1538 1596 0.250124 CTCCCGTTGTACACCTGCAA 60.250 55.000 0.00 0.00 0.00 4.08
1756 1814 1.448013 GAGCTTGACCTGGCCGTAC 60.448 63.158 0.00 0.00 0.00 3.67
1840 1898 2.125188 GTGCAGAGCAGCTCCCTC 60.125 66.667 19.40 8.82 40.08 4.30
1953 2014 2.715336 TGGCTACCTAGGTAGGAGTAGG 59.285 54.545 38.22 20.38 46.63 3.18
1954 2015 3.811454 GCTGGCTACCTAGGTAGGAGTAG 60.811 56.522 38.22 22.75 46.63 2.57
1955 2016 2.107901 GCTGGCTACCTAGGTAGGAGTA 59.892 54.545 38.22 14.33 46.63 2.59
1956 2017 1.133419 GCTGGCTACCTAGGTAGGAGT 60.133 57.143 38.22 11.37 46.63 3.85
1957 2018 1.623163 GCTGGCTACCTAGGTAGGAG 58.377 60.000 38.22 24.04 46.63 3.69
1958 2019 0.187851 GGCTGGCTACCTAGGTAGGA 59.812 60.000 38.22 15.72 46.63 2.94
1959 2020 0.832559 GGGCTGGCTACCTAGGTAGG 60.833 65.000 38.22 26.96 45.87 3.18
1963 2024 0.623723 TTTTGGGCTGGCTACCTAGG 59.376 55.000 7.41 7.41 0.00 3.02
1973 2034 6.150140 GGAGCAATACTAGATATTTTGGGCTG 59.850 42.308 0.00 0.00 31.99 4.85
1989 2050 4.508662 AGTTCAACTAGCAGGAGCAATAC 58.491 43.478 0.00 0.00 45.49 1.89
2015 2079 1.068610 AGTTGCAACACACACACACAC 60.069 47.619 30.11 0.00 0.00 3.82
2016 2080 1.242989 AGTTGCAACACACACACACA 58.757 45.000 30.11 0.00 0.00 3.72
2017 2081 2.250188 GAAGTTGCAACACACACACAC 58.750 47.619 30.11 0.63 0.00 3.82
2018 2082 1.882623 TGAAGTTGCAACACACACACA 59.117 42.857 30.11 15.32 0.00 3.72
2022 2086 2.031560 GTCGATGAAGTTGCAACACACA 59.968 45.455 30.11 24.07 0.00 3.72
2076 2148 0.173255 AGCAATTTGGCGTACATGGC 59.827 50.000 0.00 0.00 39.27 4.40
2078 2150 2.945278 ACAAGCAATTTGGCGTACATG 58.055 42.857 0.00 0.00 41.25 3.21
2088 2160 4.010349 GCCAGTAGGAGTACAAGCAATTT 58.990 43.478 0.00 0.00 36.89 1.82
2110 2182 2.223144 ACACACGGACATTCATTCAACG 59.777 45.455 0.00 0.00 0.00 4.10
2202 2274 7.042335 CGACACCTATTTTAAATCAGAGGAGT 58.958 38.462 10.85 9.09 31.65 3.85
2203 2275 6.018669 GCGACACCTATTTTAAATCAGAGGAG 60.019 42.308 10.85 6.47 0.00 3.69
2204 2276 5.815740 GCGACACCTATTTTAAATCAGAGGA 59.184 40.000 10.85 0.00 0.00 3.71
2205 2277 5.584649 TGCGACACCTATTTTAAATCAGAGG 59.415 40.000 4.04 4.04 0.00 3.69
2206 2278 6.662414 TGCGACACCTATTTTAAATCAGAG 57.338 37.500 0.00 0.00 0.00 3.35
2207 2279 7.624360 ATTGCGACACCTATTTTAAATCAGA 57.376 32.000 0.00 0.00 0.00 3.27
2208 2280 8.687824 AAATTGCGACACCTATTTTAAATCAG 57.312 30.769 0.00 0.00 0.00 2.90
2219 2291 9.968870 AGTTTTAAATTAAAATTGCGACACCTA 57.031 25.926 13.21 0.00 39.56 3.08
2220 2292 8.880878 AGTTTTAAATTAAAATTGCGACACCT 57.119 26.923 13.21 1.46 39.56 4.00
2224 2296 9.683651 GCCATAGTTTTAAATTAAAATTGCGAC 57.316 29.630 13.21 1.75 39.56 5.19
2225 2297 9.424319 TGCCATAGTTTTAAATTAAAATTGCGA 57.576 25.926 13.21 0.00 39.56 5.10
2226 2298 9.471742 GTGCCATAGTTTTAAATTAAAATTGCG 57.528 29.630 13.21 5.94 39.56 4.85
2247 2319 8.405531 GCAGTCAATATTCTAAAATAAGTGCCA 58.594 33.333 0.00 0.00 31.28 4.92
2248 2320 8.624776 AGCAGTCAATATTCTAAAATAAGTGCC 58.375 33.333 0.00 0.00 31.28 5.01
2271 2343 5.948162 AGAGATGCCTGATTTCTTTAAAGCA 59.052 36.000 10.51 3.77 38.61 3.91
2272 2344 6.448207 AGAGATGCCTGATTTCTTTAAAGC 57.552 37.500 10.51 0.00 0.00 3.51
2273 2345 6.600822 TGGAGAGATGCCTGATTTCTTTAAAG 59.399 38.462 9.04 9.04 0.00 1.85
2274 2346 6.484288 TGGAGAGATGCCTGATTTCTTTAAA 58.516 36.000 0.00 0.00 0.00 1.52
2275 2347 6.065976 TGGAGAGATGCCTGATTTCTTTAA 57.934 37.500 0.00 0.00 0.00 1.52
2276 2348 5.698741 TGGAGAGATGCCTGATTTCTTTA 57.301 39.130 0.00 0.00 0.00 1.85
2277 2349 4.581309 TGGAGAGATGCCTGATTTCTTT 57.419 40.909 0.00 0.00 0.00 2.52
2278 2350 4.792513 ATGGAGAGATGCCTGATTTCTT 57.207 40.909 0.00 0.00 0.00 2.52
2279 2351 5.337410 CGATATGGAGAGATGCCTGATTTCT 60.337 44.000 0.00 0.00 0.00 2.52
2280 2352 4.869297 CGATATGGAGAGATGCCTGATTTC 59.131 45.833 0.00 0.00 0.00 2.17
2281 2353 4.323333 CCGATATGGAGAGATGCCTGATTT 60.323 45.833 0.00 0.00 42.00 2.17
2282 2354 3.197333 CCGATATGGAGAGATGCCTGATT 59.803 47.826 0.00 0.00 42.00 2.57
2283 2355 2.765135 CCGATATGGAGAGATGCCTGAT 59.235 50.000 0.00 0.00 42.00 2.90
2284 2356 2.174360 CCGATATGGAGAGATGCCTGA 58.826 52.381 0.00 0.00 42.00 3.86
2285 2357 2.174360 TCCGATATGGAGAGATGCCTG 58.826 52.381 0.00 0.00 43.74 4.85
2286 2358 2.612285 TCCGATATGGAGAGATGCCT 57.388 50.000 0.00 0.00 43.74 4.75
2303 2375 3.072211 ACCGTCGGAGAAAAAGAAATCC 58.928 45.455 20.51 0.00 39.69 3.01
2304 2376 3.744426 TGACCGTCGGAGAAAAAGAAATC 59.256 43.478 20.51 0.35 39.69 2.17
2305 2377 3.735591 TGACCGTCGGAGAAAAAGAAAT 58.264 40.909 20.51 0.00 39.69 2.17
2306 2378 3.182341 TGACCGTCGGAGAAAAAGAAA 57.818 42.857 20.51 0.00 39.69 2.52
2307 2379 2.894763 TGACCGTCGGAGAAAAAGAA 57.105 45.000 20.51 0.00 39.69 2.52
2308 2380 3.064207 CAATGACCGTCGGAGAAAAAGA 58.936 45.455 20.51 0.00 39.69 2.52
2309 2381 2.806244 ACAATGACCGTCGGAGAAAAAG 59.194 45.455 20.51 3.94 39.69 2.27
2310 2382 2.803956 GACAATGACCGTCGGAGAAAAA 59.196 45.455 20.51 0.00 39.69 1.94
2311 2383 2.036733 AGACAATGACCGTCGGAGAAAA 59.963 45.455 20.51 0.00 39.69 2.29
2312 2384 1.616865 AGACAATGACCGTCGGAGAAA 59.383 47.619 20.51 0.00 39.69 2.52
2313 2385 1.201647 GAGACAATGACCGTCGGAGAA 59.798 52.381 20.51 2.77 39.69 2.87
2314 2386 0.809385 GAGACAATGACCGTCGGAGA 59.191 55.000 20.51 3.60 38.46 3.71
2315 2387 0.811915 AGAGACAATGACCGTCGGAG 59.188 55.000 20.51 4.67 38.46 4.63
2316 2388 0.809385 GAGAGACAATGACCGTCGGA 59.191 55.000 20.51 0.00 38.46 4.55
2317 2389 0.811915 AGAGAGACAATGACCGTCGG 59.188 55.000 10.48 10.48 38.46 4.79
2318 2390 1.202200 GGAGAGAGACAATGACCGTCG 60.202 57.143 0.00 0.00 38.46 5.12
2319 2391 1.819288 TGGAGAGAGACAATGACCGTC 59.181 52.381 0.00 0.00 0.00 4.79
2320 2392 1.924731 TGGAGAGAGACAATGACCGT 58.075 50.000 0.00 0.00 0.00 4.83
2321 2393 2.611518 GTTGGAGAGAGACAATGACCG 58.388 52.381 0.00 0.00 0.00 4.79
2322 2394 2.028930 ACGTTGGAGAGAGACAATGACC 60.029 50.000 0.00 0.00 37.13 4.02
2323 2395 2.989840 CACGTTGGAGAGAGACAATGAC 59.010 50.000 0.00 0.00 37.13 3.06
2324 2396 2.628178 ACACGTTGGAGAGAGACAATGA 59.372 45.455 0.00 0.00 37.13 2.57
2325 2397 2.989840 GACACGTTGGAGAGAGACAATG 59.010 50.000 0.00 0.00 39.03 2.82
2326 2398 2.351835 CGACACGTTGGAGAGAGACAAT 60.352 50.000 0.00 0.00 0.00 2.71
2327 2399 1.001706 CGACACGTTGGAGAGAGACAA 60.002 52.381 0.00 0.00 0.00 3.18
2328 2400 0.591659 CGACACGTTGGAGAGAGACA 59.408 55.000 0.00 0.00 0.00 3.41
2329 2401 0.592148 ACGACACGTTGGAGAGAGAC 59.408 55.000 0.00 0.00 36.35 3.36
2330 2402 3.016997 ACGACACGTTGGAGAGAGA 57.983 52.632 0.00 0.00 36.35 3.10
2348 2420 9.179909 TGTTTAAGAACAAGACCATTTGTCTAA 57.820 29.630 0.00 0.00 45.21 2.10
2349 2421 8.740123 TGTTTAAGAACAAGACCATTTGTCTA 57.260 30.769 0.00 0.00 45.21 2.59
2350 2422 7.639113 TGTTTAAGAACAAGACCATTTGTCT 57.361 32.000 0.00 0.00 43.78 3.41
2363 2435 7.669089 ATCCTTTTCCCTTTGTTTAAGAACA 57.331 32.000 0.00 0.00 43.73 3.18
2370 2442 9.613428 CTTCTTTTAATCCTTTTCCCTTTGTTT 57.387 29.630 0.00 0.00 0.00 2.83
2371 2443 8.768397 ACTTCTTTTAATCCTTTTCCCTTTGTT 58.232 29.630 0.00 0.00 0.00 2.83
2372 2444 8.204160 CACTTCTTTTAATCCTTTTCCCTTTGT 58.796 33.333 0.00 0.00 0.00 2.83
2373 2445 8.204160 ACACTTCTTTTAATCCTTTTCCCTTTG 58.796 33.333 0.00 0.00 0.00 2.77
2374 2446 8.319057 ACACTTCTTTTAATCCTTTTCCCTTT 57.681 30.769 0.00 0.00 0.00 3.11
2375 2447 7.255486 CGACACTTCTTTTAATCCTTTTCCCTT 60.255 37.037 0.00 0.00 0.00 3.95
2376 2448 6.206829 CGACACTTCTTTTAATCCTTTTCCCT 59.793 38.462 0.00 0.00 0.00 4.20
2377 2449 6.016527 ACGACACTTCTTTTAATCCTTTTCCC 60.017 38.462 0.00 0.00 0.00 3.97
2378 2450 6.967135 ACGACACTTCTTTTAATCCTTTTCC 58.033 36.000 0.00 0.00 0.00 3.13
2379 2451 7.636326 TGACGACACTTCTTTTAATCCTTTTC 58.364 34.615 0.00 0.00 0.00 2.29
2380 2452 7.497909 TCTGACGACACTTCTTTTAATCCTTTT 59.502 33.333 0.00 0.00 0.00 2.27
2381 2453 6.990349 TCTGACGACACTTCTTTTAATCCTTT 59.010 34.615 0.00 0.00 0.00 3.11
2382 2454 6.424207 GTCTGACGACACTTCTTTTAATCCTT 59.576 38.462 0.00 0.00 39.98 3.36
2383 2455 5.927115 GTCTGACGACACTTCTTTTAATCCT 59.073 40.000 0.00 0.00 39.98 3.24
2384 2456 5.694910 TGTCTGACGACACTTCTTTTAATCC 59.305 40.000 2.98 0.00 44.85 3.01
2385 2457 6.764877 TGTCTGACGACACTTCTTTTAATC 57.235 37.500 2.98 0.00 44.85 1.75
2398 2470 6.250819 CAAATATGACCATTTGTCTGACGAC 58.749 40.000 2.98 0.00 44.75 4.34
2399 2471 6.421377 CAAATATGACCATTTGTCTGACGA 57.579 37.500 2.98 0.00 44.75 4.20
2407 2479 8.400947 CAGAGGAGTAACAAATATGACCATTTG 58.599 37.037 6.95 6.95 46.66 2.32
2412 2484 6.049790 GGTCAGAGGAGTAACAAATATGACC 58.950 44.000 4.92 4.92 45.09 4.02
2413 2485 6.049790 GGGTCAGAGGAGTAACAAATATGAC 58.950 44.000 0.00 0.00 35.07 3.06
2435 2508 8.980143 ATTAAATTCACGACACTTATTTTGGG 57.020 30.769 0.00 0.00 0.00 4.12
2481 2560 5.941058 TGCCTCCGATTTAAAATAAGTGTCA 59.059 36.000 0.00 0.00 0.00 3.58
2588 2672 6.758886 CGACTCTTCTAGATGTATTTTTGCCT 59.241 38.462 5.60 0.00 0.00 4.75
2606 2690 0.538584 TGCTGATGATGGCGACTCTT 59.461 50.000 0.00 0.00 0.00 2.85
2643 2740 3.896648 CACAATTGTGTTAGGAAGCGT 57.103 42.857 27.08 0.00 40.96 5.07
2731 2830 4.750098 ACTCGGCGTCTTCATAATTATTGG 59.250 41.667 6.85 0.00 0.00 3.16
2750 2849 4.646915 GCCTCTAGGACGTGGAAACTCG 62.647 59.091 0.00 0.00 43.44 4.18
2761 2860 5.552870 TTGATTATGAAGGCCTCTAGGAC 57.447 43.478 5.23 0.00 46.16 3.85
2839 2956 3.057876 GCGATGTGGATTGGTTTGTGTTA 60.058 43.478 0.00 0.00 0.00 2.41
2859 2977 3.111098 GCCTGATTTCTTTAATGCAGCG 58.889 45.455 0.00 0.00 0.00 5.18
2865 2984 6.586344 TCGAGAGATGCCTGATTTCTTTAAT 58.414 36.000 0.00 0.00 33.31 1.40
2899 3029 3.897505 TGGAGAGAGACAATGACAGTCAA 59.102 43.478 7.50 0.00 38.46 3.18
2904 3034 1.203287 CGCTGGAGAGAGACAATGACA 59.797 52.381 0.00 0.00 0.00 3.58
3018 3149 2.178912 TTGTGGAAACGCTAGGAAGG 57.821 50.000 0.00 0.00 42.82 3.46
3047 3178 5.106157 GGATGCCATGTTCCTTAATAATCGG 60.106 44.000 0.00 0.00 0.00 4.18
3048 3179 5.106157 GGGATGCCATGTTCCTTAATAATCG 60.106 44.000 0.00 0.00 32.34 3.34
3049 3180 5.774690 TGGGATGCCATGTTCCTTAATAATC 59.225 40.000 0.00 0.00 32.34 1.75
3067 3199 1.074889 TGCATCATGAGGGATGGGATG 59.925 52.381 9.76 0.00 43.85 3.51
3079 3211 7.701078 GGCTAGATATTTTATGCTTGCATCATG 59.299 37.037 11.64 0.00 32.16 3.07
3100 3232 3.604582 CTTTTGGTCTTGAGAGGGCTAG 58.395 50.000 0.00 0.00 0.00 3.42
3101 3233 2.305927 CCTTTTGGTCTTGAGAGGGCTA 59.694 50.000 0.00 0.00 34.07 3.93
3102 3234 1.074566 CCTTTTGGTCTTGAGAGGGCT 59.925 52.381 0.00 0.00 34.07 5.19
3103 3235 1.539157 CCTTTTGGTCTTGAGAGGGC 58.461 55.000 0.00 0.00 34.07 5.19
3104 3236 2.206576 CCCTTTTGGTCTTGAGAGGG 57.793 55.000 0.00 0.00 38.03 4.30
3115 3247 5.104941 GGGATCAAGGATTTTACCCTTTTGG 60.105 44.000 0.00 0.00 41.79 3.28
3116 3248 5.104941 GGGGATCAAGGATTTTACCCTTTTG 60.105 44.000 0.00 0.00 41.79 2.44
3117 3249 5.030147 GGGGATCAAGGATTTTACCCTTTT 58.970 41.667 0.00 0.00 41.79 2.27
3118 3250 4.574172 GGGGGATCAAGGATTTTACCCTTT 60.574 45.833 0.00 0.00 41.79 3.11
3119 3251 3.052109 GGGGGATCAAGGATTTTACCCTT 60.052 47.826 0.00 0.00 44.36 3.95
3120 3252 2.518407 GGGGGATCAAGGATTTTACCCT 59.482 50.000 0.00 0.00 37.10 4.34
3121 3253 2.958818 GGGGGATCAAGGATTTTACCC 58.041 52.381 0.00 0.00 36.17 3.69
3145 3277 4.736896 GACGTGGACGAGTGGGGC 62.737 72.222 6.12 0.00 43.02 5.80
3146 3278 4.415332 CGACGTGGACGAGTGGGG 62.415 72.222 6.12 0.00 43.02 4.96
3147 3279 3.359523 TCGACGTGGACGAGTGGG 61.360 66.667 6.12 0.00 43.02 4.61
3148 3280 2.126965 GTCGACGTGGACGAGTGG 60.127 66.667 15.08 0.00 43.02 4.00
3149 3281 2.126965 GGTCGACGTGGACGAGTG 60.127 66.667 22.07 0.00 43.02 3.51
3150 3282 1.727511 TTTGGTCGACGTGGACGAGT 61.728 55.000 22.07 0.00 43.02 4.18
3151 3283 1.008194 TTTGGTCGACGTGGACGAG 60.008 57.895 22.07 0.00 43.02 4.18
3152 3284 1.299316 GTTTGGTCGACGTGGACGA 60.299 57.895 22.07 16.95 43.02 4.20
3153 3285 1.299620 AGTTTGGTCGACGTGGACG 60.300 57.895 22.07 6.71 46.33 4.79
3154 3286 1.219522 CCAGTTTGGTCGACGTGGAC 61.220 60.000 21.05 21.05 36.18 4.02
3155 3287 1.068417 CCAGTTTGGTCGACGTGGA 59.932 57.895 9.92 0.00 31.35 4.02
3156 3288 2.604174 GCCAGTTTGGTCGACGTGG 61.604 63.158 9.92 11.58 40.46 4.94
3157 3289 1.157870 AAGCCAGTTTGGTCGACGTG 61.158 55.000 9.92 1.76 40.46 4.49
3158 3290 0.878961 GAAGCCAGTTTGGTCGACGT 60.879 55.000 9.92 0.00 40.46 4.34
3159 3291 0.878523 TGAAGCCAGTTTGGTCGACG 60.879 55.000 9.92 0.00 40.46 5.12
3160 3292 1.464997 GATGAAGCCAGTTTGGTCGAC 59.535 52.381 7.13 7.13 40.46 4.20
3161 3293 1.347707 AGATGAAGCCAGTTTGGTCGA 59.652 47.619 0.00 0.00 40.46 4.20
3162 3294 1.813513 AGATGAAGCCAGTTTGGTCG 58.186 50.000 0.00 0.00 40.46 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.