Multiple sequence alignment - TraesCS6A01G334600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G334600 chr6A 100.000 3056 0 0 1 3056 565339384 565342439 0.000000e+00 5644.0
1 TraesCS6A01G334600 chr6A 86.461 1780 149 50 745 2456 564279118 564277363 0.000000e+00 1868.0
2 TraesCS6A01G334600 chr6A 96.183 131 5 0 1 131 565326511 565326641 6.640000e-52 215.0
3 TraesCS6A01G334600 chr6A 87.500 72 9 0 2343 2414 490473341 490473270 1.950000e-12 84.2
4 TraesCS6A01G334600 chr6D 91.352 2174 138 20 919 3054 422601215 422603376 0.000000e+00 2928.0
5 TraesCS6A01G334600 chr6D 90.440 1862 101 36 740 2570 422215131 422216946 0.000000e+00 2381.0
6 TraesCS6A01G334600 chr6D 84.736 2352 206 81 630 2876 421661442 421663745 0.000000e+00 2213.0
7 TraesCS6A01G334600 chr6D 84.763 2343 207 80 630 2876 421679431 421681719 0.000000e+00 2211.0
8 TraesCS6A01G334600 chr6D 84.305 2230 215 72 740 2877 421468232 421466046 0.000000e+00 2054.0
9 TraesCS6A01G334600 chr6D 86.083 1976 179 44 986 2877 420970352 420968389 0.000000e+00 2037.0
10 TraesCS6A01G334600 chr6D 86.971 1466 103 38 630 2037 421688770 421690205 0.000000e+00 1568.0
11 TraesCS6A01G334600 chr6D 92.813 487 32 3 2570 3056 422216981 422217464 0.000000e+00 702.0
12 TraesCS6A01G334600 chr6D 81.393 876 111 33 2042 2876 421695319 421696183 0.000000e+00 667.0
13 TraesCS6A01G334600 chr6D 87.349 498 53 4 132 619 466990581 466990084 2.060000e-156 562.0
14 TraesCS6A01G334600 chr6D 84.953 319 15 8 630 923 422600883 422601193 2.980000e-75 292.0
15 TraesCS6A01G334600 chr6D 79.885 174 17 6 690 856 420970602 420970440 8.960000e-21 111.0
16 TraesCS6A01G334600 chr6B 91.650 2036 137 14 1046 3056 636746185 636748212 0.000000e+00 2787.0
17 TraesCS6A01G334600 chr6B 85.616 1606 155 43 740 2283 634504245 634502654 0.000000e+00 1616.0
18 TraesCS6A01G334600 chr6B 87.946 448 44 4 132 569 75403209 75403656 1.260000e-143 520.0
19 TraesCS6A01G334600 chr6B 84.263 502 67 6 132 622 533990566 533990066 2.130000e-131 479.0
20 TraesCS6A01G334600 chr6B 84.073 496 66 8 132 614 563121433 563121928 1.660000e-127 466.0
21 TraesCS6A01G334600 chr6B 89.362 94 4 2 633 721 634559735 634559643 2.490000e-21 113.0
22 TraesCS6A01G334600 chr7B 86.667 495 51 9 132 614 675368811 675369302 4.490000e-148 534.0
23 TraesCS6A01G334600 chr7B 95.000 40 2 0 2918 2957 176030124 176030085 2.540000e-06 63.9
24 TraesCS6A01G334600 chr5B 86.028 501 59 4 134 623 655094582 655095082 7.500000e-146 527.0
25 TraesCS6A01G334600 chr3D 79.800 500 76 18 132 614 127246480 127246971 1.050000e-89 340.0
26 TraesCS6A01G334600 chr1A 78.357 499 86 15 132 614 445897457 445896965 1.380000e-78 303.0
27 TraesCS6A01G334600 chr1A 88.525 61 4 3 2908 2966 586948009 586947950 1.520000e-08 71.3
28 TraesCS6A01G334600 chr2B 77.932 503 92 15 132 619 548647652 548648150 2.300000e-76 296.0
29 TraesCS6A01G334600 chr4A 78.323 489 80 18 149 619 285953898 285954378 2.980000e-75 292.0
30 TraesCS6A01G334600 chr4A 96.183 131 5 0 1 131 164768011 164767881 6.640000e-52 215.0
31 TraesCS6A01G334600 chr4A 97.674 43 1 0 2913 2955 685429026 685429068 1.180000e-09 75.0
32 TraesCS6A01G334600 chr7A 96.947 131 4 0 1 131 389158439 389158569 1.430000e-53 220.0
33 TraesCS6A01G334600 chr7A 95.455 132 6 0 1 132 300474526 300474657 8.580000e-51 211.0
34 TraesCS6A01G334600 chr7A 85.075 67 5 3 2893 2957 7659187 7659124 2.540000e-06 63.9
35 TraesCS6A01G334600 chr2A 96.947 131 4 0 1 131 592901006 592900876 1.430000e-53 220.0
36 TraesCS6A01G334600 chr2A 95.522 134 6 0 1 134 224057637 224057504 6.640000e-52 215.0
37 TraesCS6A01G334600 chr2A 96.183 131 5 0 1 131 514829439 514829309 6.640000e-52 215.0
38 TraesCS6A01G334600 chr2A 96.183 131 5 0 1 131 592908613 592908483 6.640000e-52 215.0
39 TraesCS6A01G334600 chr3A 96.183 131 5 0 1 131 528273733 528273603 6.640000e-52 215.0
40 TraesCS6A01G334600 chr4B 83.065 124 21 0 2426 2549 535426943 535426820 2.490000e-21 113.0
41 TraesCS6A01G334600 chr3B 88.889 81 5 4 2887 2965 107962838 107962760 2.510000e-16 97.1
42 TraesCS6A01G334600 chr1D 95.122 41 2 0 2917 2957 478974643 478974683 7.070000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G334600 chr6A 565339384 565342439 3055 False 5644.0 5644 100.0000 1 3056 1 chr6A.!!$F2 3055
1 TraesCS6A01G334600 chr6A 564277363 564279118 1755 True 1868.0 1868 86.4610 745 2456 1 chr6A.!!$R2 1711
2 TraesCS6A01G334600 chr6D 421661442 421663745 2303 False 2213.0 2213 84.7360 630 2876 1 chr6D.!!$F1 2246
3 TraesCS6A01G334600 chr6D 421679431 421681719 2288 False 2211.0 2211 84.7630 630 2876 1 chr6D.!!$F2 2246
4 TraesCS6A01G334600 chr6D 421466046 421468232 2186 True 2054.0 2054 84.3050 740 2877 1 chr6D.!!$R1 2137
5 TraesCS6A01G334600 chr6D 422600883 422603376 2493 False 1610.0 2928 88.1525 630 3054 2 chr6D.!!$F6 2424
6 TraesCS6A01G334600 chr6D 421688770 421690205 1435 False 1568.0 1568 86.9710 630 2037 1 chr6D.!!$F3 1407
7 TraesCS6A01G334600 chr6D 422215131 422217464 2333 False 1541.5 2381 91.6265 740 3056 2 chr6D.!!$F5 2316
8 TraesCS6A01G334600 chr6D 420968389 420970602 2213 True 1074.0 2037 82.9840 690 2877 2 chr6D.!!$R3 2187
9 TraesCS6A01G334600 chr6D 421695319 421696183 864 False 667.0 667 81.3930 2042 2876 1 chr6D.!!$F4 834
10 TraesCS6A01G334600 chr6B 636746185 636748212 2027 False 2787.0 2787 91.6500 1046 3056 1 chr6B.!!$F3 2010
11 TraesCS6A01G334600 chr6B 634502654 634504245 1591 True 1616.0 1616 85.6160 740 2283 1 chr6B.!!$R2 1543
12 TraesCS6A01G334600 chr6B 533990066 533990566 500 True 479.0 479 84.2630 132 622 1 chr6B.!!$R1 490
13 TraesCS6A01G334600 chr5B 655094582 655095082 500 False 527.0 527 86.0280 134 623 1 chr5B.!!$F1 489

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
445 456 0.033699 AGCTTTCCCATTGCCTCCTC 60.034 55.0 0.00 0.00 0.00 3.71 F
516 527 0.107066 TGGATCCGTAGACGTAGCCA 60.107 55.0 7.39 0.09 37.74 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1690 1860 2.422235 CCCTGCAACCCGTCCAATAATA 60.422 50.000 0.0 0.0 0.00 0.98 R
2467 2675 3.531207 CCGCCATCTGCTCTCCGA 61.531 66.667 0.0 0.0 38.05 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.371102 GATAGTATGCTGCTTGTCCGA 57.629 47.619 0.00 0.00 0.00 4.55
21 22 2.871182 TAGTATGCTGCTTGTCCGAG 57.129 50.000 0.00 0.00 0.00 4.63
22 23 0.898320 AGTATGCTGCTTGTCCGAGT 59.102 50.000 0.00 0.00 0.00 4.18
23 24 1.002366 GTATGCTGCTTGTCCGAGTG 58.998 55.000 0.00 0.00 0.00 3.51
24 25 0.108186 TATGCTGCTTGTCCGAGTGG 60.108 55.000 0.00 0.00 0.00 4.00
25 26 1.830587 ATGCTGCTTGTCCGAGTGGA 61.831 55.000 0.00 0.00 43.88 4.02
40 41 7.158099 TCCGAGTGGATAATATGTCTGTATG 57.842 40.000 0.00 0.00 40.17 2.39
41 42 6.946009 TCCGAGTGGATAATATGTCTGTATGA 59.054 38.462 0.00 0.00 40.17 2.15
42 43 7.450323 TCCGAGTGGATAATATGTCTGTATGAA 59.550 37.037 0.00 0.00 40.17 2.57
43 44 8.088365 CCGAGTGGATAATATGTCTGTATGAAA 58.912 37.037 0.00 0.00 37.49 2.69
44 45 9.645059 CGAGTGGATAATATGTCTGTATGAAAT 57.355 33.333 0.00 0.00 0.00 2.17
56 57 8.948631 TGTCTGTATGAAATTTATCTGGACTC 57.051 34.615 0.00 0.00 0.00 3.36
57 58 8.539544 TGTCTGTATGAAATTTATCTGGACTCA 58.460 33.333 0.00 0.00 0.00 3.41
58 59 8.821894 GTCTGTATGAAATTTATCTGGACTCAC 58.178 37.037 0.00 0.00 0.00 3.51
59 60 8.539544 TCTGTATGAAATTTATCTGGACTCACA 58.460 33.333 0.00 0.00 0.00 3.58
60 61 9.334947 CTGTATGAAATTTATCTGGACTCACAT 57.665 33.333 0.00 0.00 0.00 3.21
61 62 9.112725 TGTATGAAATTTATCTGGACTCACATG 57.887 33.333 0.00 0.00 0.00 3.21
62 63 9.113838 GTATGAAATTTATCTGGACTCACATGT 57.886 33.333 0.00 0.00 0.00 3.21
63 64 8.585471 ATGAAATTTATCTGGACTCACATGTT 57.415 30.769 0.00 0.00 0.00 2.71
64 65 7.819644 TGAAATTTATCTGGACTCACATGTTG 58.180 34.615 0.00 0.00 0.00 3.33
65 66 7.448161 TGAAATTTATCTGGACTCACATGTTGT 59.552 33.333 0.00 0.00 0.00 3.32
75 76 2.559698 CACATGTTGTGTAGACCCCA 57.440 50.000 0.00 0.00 43.08 4.96
76 77 3.071874 CACATGTTGTGTAGACCCCAT 57.928 47.619 0.00 0.00 43.08 4.00
77 78 4.214986 CACATGTTGTGTAGACCCCATA 57.785 45.455 0.00 0.00 43.08 2.74
78 79 3.938963 CACATGTTGTGTAGACCCCATAC 59.061 47.826 0.00 0.00 43.08 2.39
79 80 3.844211 ACATGTTGTGTAGACCCCATACT 59.156 43.478 0.00 0.00 39.91 2.12
80 81 4.288626 ACATGTTGTGTAGACCCCATACTT 59.711 41.667 0.00 0.00 39.91 2.24
81 82 4.546829 TGTTGTGTAGACCCCATACTTC 57.453 45.455 0.00 0.00 0.00 3.01
82 83 3.904965 TGTTGTGTAGACCCCATACTTCA 59.095 43.478 0.00 0.00 0.00 3.02
83 84 4.534500 TGTTGTGTAGACCCCATACTTCAT 59.466 41.667 0.00 0.00 0.00 2.57
84 85 4.753516 TGTGTAGACCCCATACTTCATG 57.246 45.455 0.00 0.00 0.00 3.07
85 86 4.358214 TGTGTAGACCCCATACTTCATGA 58.642 43.478 0.00 0.00 36.69 3.07
86 87 4.968719 TGTGTAGACCCCATACTTCATGAT 59.031 41.667 0.00 0.00 36.69 2.45
87 88 6.140377 TGTGTAGACCCCATACTTCATGATA 58.860 40.000 0.00 0.00 36.69 2.15
88 89 6.787458 TGTGTAGACCCCATACTTCATGATAT 59.213 38.462 0.00 0.00 36.69 1.63
89 90 7.292356 TGTGTAGACCCCATACTTCATGATATT 59.708 37.037 0.00 0.00 36.69 1.28
90 91 8.157476 GTGTAGACCCCATACTTCATGATATTT 58.843 37.037 0.00 0.00 36.69 1.40
91 92 8.723365 TGTAGACCCCATACTTCATGATATTTT 58.277 33.333 0.00 0.00 36.69 1.82
92 93 9.003658 GTAGACCCCATACTTCATGATATTTTG 57.996 37.037 0.00 0.00 36.69 2.44
93 94 7.815383 AGACCCCATACTTCATGATATTTTGA 58.185 34.615 0.00 0.00 36.69 2.69
94 95 7.721399 AGACCCCATACTTCATGATATTTTGAC 59.279 37.037 0.00 0.00 36.69 3.18
95 96 6.777580 ACCCCATACTTCATGATATTTTGACC 59.222 38.462 0.00 0.00 36.69 4.02
96 97 6.209391 CCCCATACTTCATGATATTTTGACCC 59.791 42.308 0.00 0.00 36.69 4.46
97 98 7.006509 CCCATACTTCATGATATTTTGACCCT 58.993 38.462 0.00 0.00 36.69 4.34
98 99 7.506938 CCCATACTTCATGATATTTTGACCCTT 59.493 37.037 0.00 0.00 36.69 3.95
99 100 8.571336 CCATACTTCATGATATTTTGACCCTTC 58.429 37.037 0.00 0.00 36.69 3.46
100 101 9.123902 CATACTTCATGATATTTTGACCCTTCA 57.876 33.333 0.00 0.00 36.69 3.02
101 102 9.872684 ATACTTCATGATATTTTGACCCTTCAT 57.127 29.630 0.00 0.00 0.00 2.57
102 103 8.004087 ACTTCATGATATTTTGACCCTTCATG 57.996 34.615 0.00 0.00 40.98 3.07
103 104 6.964807 TCATGATATTTTGACCCTTCATGG 57.035 37.500 9.95 0.00 40.36 3.66
113 114 2.311287 CCTTCATGGGCCTACCTGT 58.689 57.895 4.53 0.00 41.11 4.00
114 115 0.625849 CCTTCATGGGCCTACCTGTT 59.374 55.000 4.53 0.00 41.11 3.16
115 116 1.843851 CCTTCATGGGCCTACCTGTTA 59.156 52.381 4.53 0.00 41.11 2.41
116 117 2.443255 CCTTCATGGGCCTACCTGTTAT 59.557 50.000 4.53 0.00 41.11 1.89
117 118 3.480470 CTTCATGGGCCTACCTGTTATG 58.520 50.000 4.53 0.00 41.11 1.90
118 119 2.487775 TCATGGGCCTACCTGTTATGT 58.512 47.619 4.53 0.00 41.11 2.29
119 120 2.172505 TCATGGGCCTACCTGTTATGTG 59.827 50.000 4.53 0.00 41.11 3.21
120 121 1.663911 TGGGCCTACCTGTTATGTGT 58.336 50.000 4.53 0.00 41.11 3.72
121 122 2.835389 TGGGCCTACCTGTTATGTGTA 58.165 47.619 4.53 0.00 41.11 2.90
122 123 3.389866 TGGGCCTACCTGTTATGTGTAT 58.610 45.455 4.53 0.00 41.11 2.29
123 124 3.389983 TGGGCCTACCTGTTATGTGTATC 59.610 47.826 4.53 0.00 41.11 2.24
124 125 3.244457 GGGCCTACCTGTTATGTGTATCC 60.244 52.174 0.84 0.00 35.85 2.59
125 126 3.244457 GGCCTACCTGTTATGTGTATCCC 60.244 52.174 0.00 0.00 0.00 3.85
126 127 3.244457 GCCTACCTGTTATGTGTATCCCC 60.244 52.174 0.00 0.00 0.00 4.81
127 128 3.971305 CCTACCTGTTATGTGTATCCCCA 59.029 47.826 0.00 0.00 0.00 4.96
128 129 4.410883 CCTACCTGTTATGTGTATCCCCAA 59.589 45.833 0.00 0.00 0.00 4.12
129 130 4.230745 ACCTGTTATGTGTATCCCCAAC 57.769 45.455 0.00 0.00 0.00 3.77
130 131 3.589735 ACCTGTTATGTGTATCCCCAACA 59.410 43.478 0.00 0.00 0.00 3.33
153 154 2.100252 CGGCCTCATGCAATCTTCAAAT 59.900 45.455 0.00 0.00 43.89 2.32
156 157 4.382254 GGCCTCATGCAATCTTCAAATTCA 60.382 41.667 0.00 0.00 43.89 2.57
158 159 4.804139 CCTCATGCAATCTTCAAATTCAGC 59.196 41.667 0.00 0.00 0.00 4.26
161 162 4.182693 TGCAATCTTCAAATTCAGCCAG 57.817 40.909 0.00 0.00 0.00 4.85
189 190 1.746615 ATGCCGACTCACATGCCAC 60.747 57.895 0.00 0.00 0.00 5.01
198 199 1.221566 CACATGCCACGGAGATCCA 59.778 57.895 0.00 0.00 35.14 3.41
201 202 0.107268 CATGCCACGGAGATCCATCA 59.893 55.000 0.00 0.00 35.14 3.07
215 216 2.126110 ATCACGCACGCGATCACA 60.126 55.556 19.66 0.00 42.83 3.58
224 225 2.167219 CGCGATCACAATCACGGCT 61.167 57.895 0.00 0.00 34.56 5.52
240 241 1.739035 CGGCTATTCTCAAACTCCGCA 60.739 52.381 0.00 0.00 0.00 5.69
246 247 3.691049 TTCTCAAACTCCGCAACAAAG 57.309 42.857 0.00 0.00 0.00 2.77
247 248 1.946768 TCTCAAACTCCGCAACAAAGG 59.053 47.619 0.00 0.00 0.00 3.11
261 262 1.639108 ACAAAGGTATTCTCCCCCACC 59.361 52.381 0.00 0.00 0.00 4.61
275 276 1.237285 CCCACCGGCTTGAAGAACAG 61.237 60.000 0.00 0.00 0.00 3.16
276 277 0.535102 CCACCGGCTTGAAGAACAGT 60.535 55.000 0.00 0.00 0.00 3.55
291 292 0.496841 ACAGTCCCCTAGGGTTTCCT 59.503 55.000 26.66 12.82 44.74 3.36
303 304 3.256960 TTTCCTCAGGCCGGCCTT 61.257 61.111 45.58 27.57 45.70 4.35
305 306 1.910580 TTTCCTCAGGCCGGCCTTAG 61.911 60.000 45.58 41.91 45.70 2.18
306 307 4.554036 CCTCAGGCCGGCCTTAGC 62.554 72.222 45.58 19.32 45.70 3.09
320 331 1.062002 CCTTAGCGCGTTTGTATGTGG 59.938 52.381 8.43 0.00 0.00 4.17
329 340 3.331150 CGTTTGTATGTGGAGCACCTTA 58.669 45.455 0.71 0.00 37.04 2.69
338 349 0.175760 GGAGCACCTTACGATGCAGA 59.824 55.000 0.00 0.00 44.59 4.26
356 367 3.899981 AACCTTGCCAGCGATCGCA 62.900 57.895 38.60 18.20 44.88 5.10
362 373 3.084579 CCAGCGATCGCACACTTC 58.915 61.111 38.60 10.66 44.88 3.01
374 385 0.394192 CACACTTCTGCTGGACTCCA 59.606 55.000 0.00 0.00 0.00 3.86
377 388 1.277273 CACTTCTGCTGGACTCCATCA 59.723 52.381 0.00 0.00 30.82 3.07
380 391 0.749049 TCTGCTGGACTCCATCATCG 59.251 55.000 2.02 0.00 28.95 3.84
382 393 1.343789 CTGCTGGACTCCATCATCGAT 59.656 52.381 2.02 0.00 28.95 3.59
395 406 4.081254 CCATCATCGATATCATCCACCACT 60.081 45.833 0.00 0.00 0.00 4.00
422 433 1.556911 GTGGCTTCTTCCTCCATGAGA 59.443 52.381 0.00 0.00 31.83 3.27
423 434 2.172293 GTGGCTTCTTCCTCCATGAGAT 59.828 50.000 0.00 0.00 31.83 2.75
424 435 2.437281 TGGCTTCTTCCTCCATGAGATC 59.563 50.000 0.00 0.00 0.00 2.75
425 436 2.224499 GGCTTCTTCCTCCATGAGATCC 60.224 54.545 0.00 0.00 0.00 3.36
426 437 2.437281 GCTTCTTCCTCCATGAGATCCA 59.563 50.000 0.00 0.00 0.00 3.41
427 438 3.494749 GCTTCTTCCTCCATGAGATCCAG 60.495 52.174 0.00 0.00 0.00 3.86
428 439 2.045524 TCTTCCTCCATGAGATCCAGC 58.954 52.381 0.00 0.00 0.00 4.85
429 440 2.048601 CTTCCTCCATGAGATCCAGCT 58.951 52.381 0.00 0.00 0.00 4.24
430 441 2.187239 TCCTCCATGAGATCCAGCTT 57.813 50.000 0.00 0.00 0.00 3.74
431 442 2.485659 TCCTCCATGAGATCCAGCTTT 58.514 47.619 0.00 0.00 0.00 3.51
432 443 2.437281 TCCTCCATGAGATCCAGCTTTC 59.563 50.000 0.00 0.00 0.00 2.62
433 444 2.486907 CCTCCATGAGATCCAGCTTTCC 60.487 54.545 0.00 0.00 0.00 3.13
434 445 1.492176 TCCATGAGATCCAGCTTTCCC 59.508 52.381 0.00 0.00 0.00 3.97
435 446 1.213678 CCATGAGATCCAGCTTTCCCA 59.786 52.381 0.00 0.00 0.00 4.37
436 447 2.158505 CCATGAGATCCAGCTTTCCCAT 60.159 50.000 0.00 0.00 0.00 4.00
437 448 3.563223 CATGAGATCCAGCTTTCCCATT 58.437 45.455 0.00 0.00 0.00 3.16
438 449 3.008835 TGAGATCCAGCTTTCCCATTG 57.991 47.619 0.00 0.00 0.00 2.82
439 450 1.680207 GAGATCCAGCTTTCCCATTGC 59.320 52.381 0.00 0.00 0.00 3.56
440 451 0.749049 GATCCAGCTTTCCCATTGCC 59.251 55.000 0.00 0.00 0.00 4.52
441 452 0.337428 ATCCAGCTTTCCCATTGCCT 59.663 50.000 0.00 0.00 0.00 4.75
442 453 0.323725 TCCAGCTTTCCCATTGCCTC 60.324 55.000 0.00 0.00 0.00 4.70
443 454 1.325476 CCAGCTTTCCCATTGCCTCC 61.325 60.000 0.00 0.00 0.00 4.30
444 455 0.324091 CAGCTTTCCCATTGCCTCCT 60.324 55.000 0.00 0.00 0.00 3.69
445 456 0.033699 AGCTTTCCCATTGCCTCCTC 60.034 55.000 0.00 0.00 0.00 3.71
446 457 1.039785 GCTTTCCCATTGCCTCCTCC 61.040 60.000 0.00 0.00 0.00 4.30
447 458 0.332632 CTTTCCCATTGCCTCCTCCA 59.667 55.000 0.00 0.00 0.00 3.86
448 459 1.009997 TTTCCCATTGCCTCCTCCAT 58.990 50.000 0.00 0.00 0.00 3.41
449 460 0.552848 TTCCCATTGCCTCCTCCATC 59.447 55.000 0.00 0.00 0.00 3.51
450 461 1.152368 CCCATTGCCTCCTCCATCC 59.848 63.158 0.00 0.00 0.00 3.51
451 462 1.228063 CCATTGCCTCCTCCATCCG 60.228 63.158 0.00 0.00 0.00 4.18
452 463 1.528824 CATTGCCTCCTCCATCCGT 59.471 57.895 0.00 0.00 0.00 4.69
453 464 0.816825 CATTGCCTCCTCCATCCGTG 60.817 60.000 0.00 0.00 0.00 4.94
454 465 2.615227 ATTGCCTCCTCCATCCGTGC 62.615 60.000 0.00 0.00 0.00 5.34
455 466 4.554036 GCCTCCTCCATCCGTGCC 62.554 72.222 0.00 0.00 0.00 5.01
456 467 3.866582 CCTCCTCCATCCGTGCCC 61.867 72.222 0.00 0.00 0.00 5.36
457 468 2.765807 CTCCTCCATCCGTGCCCT 60.766 66.667 0.00 0.00 0.00 5.19
458 469 2.285368 TCCTCCATCCGTGCCCTT 60.285 61.111 0.00 0.00 0.00 3.95
459 470 2.124570 CCTCCATCCGTGCCCTTG 60.125 66.667 0.00 0.00 0.00 3.61
460 471 2.825836 CTCCATCCGTGCCCTTGC 60.826 66.667 0.00 0.00 38.26 4.01
461 472 4.424711 TCCATCCGTGCCCTTGCC 62.425 66.667 0.00 0.00 36.33 4.52
498 509 4.415332 CCCTTGCGCTGCTGCTTG 62.415 66.667 9.73 0.00 36.97 4.01
499 510 4.415332 CCTTGCGCTGCTGCTTGG 62.415 66.667 9.73 12.90 36.97 3.61
500 511 3.359523 CTTGCGCTGCTGCTTGGA 61.360 61.111 9.73 0.00 36.97 3.53
501 512 2.674033 TTGCGCTGCTGCTTGGAT 60.674 55.556 9.73 0.00 36.97 3.41
502 513 2.594119 CTTGCGCTGCTGCTTGGATC 62.594 60.000 9.73 0.00 36.97 3.36
503 514 3.885521 GCGCTGCTGCTTGGATCC 61.886 66.667 14.03 4.20 36.97 3.36
504 515 3.570638 CGCTGCTGCTTGGATCCG 61.571 66.667 14.03 0.00 36.97 4.18
505 516 2.437359 GCTGCTGCTTGGATCCGT 60.437 61.111 7.39 0.00 36.03 4.69
506 517 1.153369 GCTGCTGCTTGGATCCGTA 60.153 57.895 7.39 0.00 36.03 4.02
507 518 1.156645 GCTGCTGCTTGGATCCGTAG 61.157 60.000 7.39 8.27 36.03 3.51
508 519 0.461548 CTGCTGCTTGGATCCGTAGA 59.538 55.000 15.82 0.00 0.00 2.59
509 520 0.175760 TGCTGCTTGGATCCGTAGAC 59.824 55.000 15.82 8.74 0.00 2.59
510 521 0.872021 GCTGCTTGGATCCGTAGACG 60.872 60.000 15.82 7.70 39.44 4.18
511 522 0.456221 CTGCTTGGATCCGTAGACGT 59.544 55.000 15.82 0.00 37.74 4.34
512 523 1.674441 CTGCTTGGATCCGTAGACGTA 59.326 52.381 15.82 0.00 37.74 3.57
513 524 1.674441 TGCTTGGATCCGTAGACGTAG 59.326 52.381 15.82 1.52 37.74 3.51
514 525 1.599916 GCTTGGATCCGTAGACGTAGC 60.600 57.143 15.82 6.93 37.74 3.58
515 526 1.001597 CTTGGATCCGTAGACGTAGCC 60.002 57.143 7.39 0.00 37.74 3.93
516 527 0.107066 TGGATCCGTAGACGTAGCCA 60.107 55.000 7.39 0.09 37.74 4.75
517 528 1.245732 GGATCCGTAGACGTAGCCAT 58.754 55.000 0.00 0.00 37.74 4.40
518 529 1.199558 GGATCCGTAGACGTAGCCATC 59.800 57.143 0.00 0.00 37.74 3.51
519 530 1.878088 GATCCGTAGACGTAGCCATCA 59.122 52.381 0.85 0.00 37.74 3.07
520 531 1.306148 TCCGTAGACGTAGCCATCAG 58.694 55.000 0.85 0.00 37.74 2.90
521 532 0.317938 CCGTAGACGTAGCCATCAGC 60.318 60.000 0.85 0.00 38.83 4.26
522 533 0.657659 CGTAGACGTAGCCATCAGCG 60.658 60.000 0.00 0.00 39.80 5.18
523 534 3.890768 CGTAGACGTAGCCATCAGCGG 62.891 61.905 0.00 0.00 39.80 5.52
530 541 3.499737 GCCATCAGCGGACCAACG 61.500 66.667 0.00 0.00 0.00 4.10
531 542 2.264480 CCATCAGCGGACCAACGA 59.736 61.111 0.00 0.00 35.47 3.85
532 543 1.811266 CCATCAGCGGACCAACGAG 60.811 63.158 0.00 0.00 35.47 4.18
533 544 1.215382 CATCAGCGGACCAACGAGA 59.785 57.895 0.00 0.00 35.47 4.04
534 545 0.803768 CATCAGCGGACCAACGAGAG 60.804 60.000 0.00 0.00 35.47 3.20
535 546 0.965866 ATCAGCGGACCAACGAGAGA 60.966 55.000 0.00 0.00 35.47 3.10
536 547 0.965866 TCAGCGGACCAACGAGAGAT 60.966 55.000 0.00 0.00 35.47 2.75
537 548 0.803768 CAGCGGACCAACGAGAGATG 60.804 60.000 0.00 0.00 35.47 2.90
538 549 2.167861 GCGGACCAACGAGAGATGC 61.168 63.158 0.00 0.00 35.47 3.91
539 550 1.215382 CGGACCAACGAGAGATGCA 59.785 57.895 0.00 0.00 35.47 3.96
540 551 1.078759 CGGACCAACGAGAGATGCAC 61.079 60.000 0.00 0.00 35.47 4.57
541 552 0.741221 GGACCAACGAGAGATGCACC 60.741 60.000 0.00 0.00 31.84 5.01
542 553 0.741221 GACCAACGAGAGATGCACCC 60.741 60.000 0.00 0.00 31.84 4.61
543 554 1.450312 CCAACGAGAGATGCACCCC 60.450 63.158 0.00 0.00 31.84 4.95
544 555 1.811266 CAACGAGAGATGCACCCCG 60.811 63.158 0.00 0.00 0.00 5.73
545 556 3.665675 AACGAGAGATGCACCCCGC 62.666 63.158 0.00 0.00 42.89 6.13
546 557 4.899239 CGAGAGATGCACCCCGCC 62.899 72.222 0.00 0.00 41.33 6.13
547 558 4.899239 GAGAGATGCACCCCGCCG 62.899 72.222 0.00 0.00 41.33 6.46
564 575 2.573689 GACGAAGGTCGACGAGCG 60.574 66.667 20.23 14.35 43.74 5.03
565 576 4.755614 ACGAAGGTCGACGAGCGC 62.756 66.667 20.23 15.29 43.74 5.92
573 584 4.485208 CGACGAGCGCCGCTTTTC 62.485 66.667 15.07 11.95 39.88 2.29
574 585 4.148645 GACGAGCGCCGCTTTTCC 62.149 66.667 15.07 0.00 39.88 3.13
575 586 4.980805 ACGAGCGCCGCTTTTCCA 62.981 61.111 15.07 0.00 39.88 3.53
576 587 4.445545 CGAGCGCCGCTTTTCCAC 62.446 66.667 15.07 0.00 39.88 4.02
577 588 3.050275 GAGCGCCGCTTTTCCACT 61.050 61.111 15.07 0.00 39.88 4.00
578 589 3.314388 GAGCGCCGCTTTTCCACTG 62.314 63.158 15.07 0.00 39.88 3.66
579 590 3.353836 GCGCCGCTTTTCCACTGA 61.354 61.111 0.00 0.00 0.00 3.41
580 591 2.903547 GCGCCGCTTTTCCACTGAA 61.904 57.895 0.00 0.00 0.00 3.02
581 592 1.652012 CGCCGCTTTTCCACTGAAA 59.348 52.632 0.00 0.00 38.69 2.69
582 593 0.660300 CGCCGCTTTTCCACTGAAAC 60.660 55.000 0.00 0.00 40.12 2.78
583 594 0.318699 GCCGCTTTTCCACTGAAACC 60.319 55.000 0.00 0.00 40.12 3.27
584 595 0.313987 CCGCTTTTCCACTGAAACCC 59.686 55.000 0.00 0.00 40.12 4.11
585 596 1.318576 CGCTTTTCCACTGAAACCCT 58.681 50.000 0.00 0.00 40.12 4.34
586 597 2.500229 CGCTTTTCCACTGAAACCCTA 58.500 47.619 0.00 0.00 40.12 3.53
587 598 2.882137 CGCTTTTCCACTGAAACCCTAA 59.118 45.455 0.00 0.00 40.12 2.69
588 599 3.506067 CGCTTTTCCACTGAAACCCTAAT 59.494 43.478 0.00 0.00 40.12 1.73
589 600 4.379499 CGCTTTTCCACTGAAACCCTAATC 60.379 45.833 0.00 0.00 40.12 1.75
590 601 4.379499 GCTTTTCCACTGAAACCCTAATCG 60.379 45.833 0.00 0.00 40.12 3.34
591 602 2.396590 TCCACTGAAACCCTAATCGC 57.603 50.000 0.00 0.00 0.00 4.58
592 603 1.065709 TCCACTGAAACCCTAATCGCC 60.066 52.381 0.00 0.00 0.00 5.54
593 604 1.065418 CCACTGAAACCCTAATCGCCT 60.065 52.381 0.00 0.00 0.00 5.52
594 605 2.280628 CACTGAAACCCTAATCGCCTC 58.719 52.381 0.00 0.00 0.00 4.70
595 606 1.209747 ACTGAAACCCTAATCGCCTCC 59.790 52.381 0.00 0.00 0.00 4.30
596 607 0.177141 TGAAACCCTAATCGCCTCCG 59.823 55.000 0.00 0.00 0.00 4.63
597 608 1.153229 AAACCCTAATCGCCTCCGC 60.153 57.895 0.00 0.00 0.00 5.54
598 609 1.906105 AAACCCTAATCGCCTCCGCA 61.906 55.000 0.00 0.00 34.03 5.69
599 610 2.029666 CCCTAATCGCCTCCGCAG 59.970 66.667 0.00 0.00 34.03 5.18
612 623 2.990479 CGCAGGGGCTCCTAGTTT 59.010 61.111 3.71 0.00 42.67 2.66
613 624 1.299976 CGCAGGGGCTCCTAGTTTT 59.700 57.895 3.71 0.00 42.67 2.43
614 625 0.322546 CGCAGGGGCTCCTAGTTTTT 60.323 55.000 3.71 0.00 42.67 1.94
615 626 1.464734 GCAGGGGCTCCTAGTTTTTC 58.535 55.000 3.71 0.00 42.67 2.29
616 627 1.739067 CAGGGGCTCCTAGTTTTTCG 58.261 55.000 3.71 0.00 42.67 3.46
617 628 0.618981 AGGGGCTCCTAGTTTTTCGG 59.381 55.000 0.94 0.00 42.75 4.30
618 629 0.393944 GGGGCTCCTAGTTTTTCGGG 60.394 60.000 0.00 0.00 0.00 5.14
619 630 0.616891 GGGCTCCTAGTTTTTCGGGA 59.383 55.000 0.00 0.00 0.00 5.14
620 631 1.003928 GGGCTCCTAGTTTTTCGGGAA 59.996 52.381 0.00 0.00 0.00 3.97
621 632 2.553685 GGGCTCCTAGTTTTTCGGGAAA 60.554 50.000 0.00 0.00 0.00 3.13
622 633 2.486982 GGCTCCTAGTTTTTCGGGAAAC 59.513 50.000 6.48 6.48 39.28 2.78
633 644 4.355720 GGGAAACCCGGGTGACCC 62.356 72.222 36.66 36.66 46.61 4.46
676 688 0.537188 AATAGTGGTGGCGGACTCTG 59.463 55.000 0.00 0.00 0.00 3.35
685 697 1.342076 TGGCGGACTCTGAGAATACCT 60.342 52.381 12.44 0.00 0.00 3.08
708 720 1.677820 GCTGGGTGTAATTACCACGCT 60.678 52.381 22.86 0.00 42.69 5.07
743 783 6.750660 TGATAAACCCAAGGGATAATACGA 57.249 37.500 13.15 0.00 38.96 3.43
781 821 3.823330 GCACGGTCGGAGTCGGAT 61.823 66.667 3.47 0.00 36.95 4.18
802 842 2.669419 GGAAACCGAATCCCGTACG 58.331 57.895 8.69 8.69 36.31 3.67
803 843 0.108662 GGAAACCGAATCCCGTACGT 60.109 55.000 15.21 0.00 36.31 3.57
804 844 0.994263 GAAACCGAATCCCGTACGTG 59.006 55.000 15.21 2.17 36.31 4.49
805 845 0.318120 AAACCGAATCCCGTACGTGT 59.682 50.000 15.21 0.00 36.31 4.49
806 846 0.388907 AACCGAATCCCGTACGTGTG 60.389 55.000 15.21 2.37 36.31 3.82
807 847 1.213537 CCGAATCCCGTACGTGTGT 59.786 57.895 15.21 0.00 36.31 3.72
808 848 1.074319 CCGAATCCCGTACGTGTGTG 61.074 60.000 15.21 0.00 36.31 3.82
859 906 2.899976 TCGTATCGAGTGGGTACGTAA 58.100 47.619 16.19 0.00 41.26 3.18
900 949 0.377554 CCGCGGCTCCGTCTATATAG 59.622 60.000 14.67 3.10 42.09 1.31
1016 1112 0.801251 GCTATGAAGATCCGGCATGC 59.199 55.000 9.90 9.90 0.00 4.06
1097 1216 4.973396 TCAGCGTTGATATTTTGCTTCTG 58.027 39.130 0.00 0.00 32.66 3.02
1117 1250 6.471233 TCTGTCTGTTCTTCTTCTTCTTGA 57.529 37.500 0.00 0.00 0.00 3.02
1409 1555 3.499338 ACATGAGCAATGAACCTTTCCA 58.501 40.909 0.00 0.00 38.72 3.53
1498 1660 1.352083 AACAGCAAGCCCTCTAGTGA 58.648 50.000 0.00 0.00 0.00 3.41
1552 1714 4.431809 TGTCATGTTTTGTTTGCCTTGAG 58.568 39.130 0.00 0.00 0.00 3.02
1663 1833 2.688446 TGACCGATTTCTCTATGCGAGT 59.312 45.455 0.00 0.00 40.75 4.18
1690 1860 1.203052 CTTTGGCTTCAACCGCATGAT 59.797 47.619 0.00 0.00 0.00 2.45
1732 1911 4.567747 GGGTGGGTTGTTCTCTTATCATGT 60.568 45.833 0.00 0.00 0.00 3.21
1743 1922 9.408648 TGTTCTCTTATCATGTGTCTACTATCA 57.591 33.333 0.00 0.00 0.00 2.15
1753 1932 8.100164 TCATGTGTCTACTATCAAATTTGGACA 58.900 33.333 17.90 17.21 0.00 4.02
1917 2098 0.874390 AGGTACGCAAGCACACATTG 59.126 50.000 0.00 0.00 45.62 2.82
1922 2103 4.093703 GGTACGCAAGCACACATTGTATTA 59.906 41.667 0.00 0.00 45.62 0.98
1991 2172 4.528596 CACAGGGTCTCTCTTTTCCTTCTA 59.471 45.833 0.00 0.00 0.00 2.10
2031 2212 1.272769 GGTCGAAGCACTACAACTCCT 59.727 52.381 0.00 0.00 0.00 3.69
2311 2503 7.998964 ACTCCTTCTTTGAAAGGTAGATTTTGA 59.001 33.333 4.94 0.00 45.16 2.69
2553 2763 2.661537 CGCACGTCCTTGCTGTCA 60.662 61.111 0.00 0.00 40.62 3.58
2560 2770 1.461268 TCCTTGCTGTCACCCTCCA 60.461 57.895 0.00 0.00 0.00 3.86
2587 2802 2.586792 CCGAGGGCCTCCTTCAAG 59.413 66.667 27.36 12.14 45.05 3.02
2613 2861 0.617820 GAGGGAGGGAAGCTGTGGTA 60.618 60.000 0.00 0.00 0.00 3.25
2703 2968 4.887071 GTGTATTGGGAGGCAATTCACATA 59.113 41.667 2.04 0.00 38.95 2.29
2725 2990 8.646004 ACATATAGAGCAGAAGAGAAGCAATTA 58.354 33.333 0.00 0.00 0.00 1.40
2819 3091 2.870435 GCCAAGGTCGACTTTAGAAGCA 60.870 50.000 16.46 0.00 37.29 3.91
2886 3158 4.213270 TCAGTCTTGCGTATCTTTTTGTGG 59.787 41.667 0.00 0.00 0.00 4.17
2969 3241 2.775911 TCTGAGCTTGTGGATCCAAG 57.224 50.000 18.20 12.81 43.76 3.61
3015 3288 3.069586 TCTCACTCTTGAACAACCATCGT 59.930 43.478 0.00 0.00 0.00 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.243569 ACTCGGACAAGCAGCATACTATC 60.244 47.826 0.00 0.00 0.00 2.08
1 2 2.695666 ACTCGGACAAGCAGCATACTAT 59.304 45.455 0.00 0.00 0.00 2.12
2 3 2.100197 ACTCGGACAAGCAGCATACTA 58.900 47.619 0.00 0.00 0.00 1.82
3 4 0.898320 ACTCGGACAAGCAGCATACT 59.102 50.000 0.00 0.00 0.00 2.12
4 5 1.002366 CACTCGGACAAGCAGCATAC 58.998 55.000 0.00 0.00 0.00 2.39
5 6 0.108186 CCACTCGGACAAGCAGCATA 60.108 55.000 0.00 0.00 0.00 3.14
6 7 1.376424 CCACTCGGACAAGCAGCAT 60.376 57.895 0.00 0.00 0.00 3.79
7 8 1.830587 ATCCACTCGGACAAGCAGCA 61.831 55.000 0.00 0.00 46.79 4.41
8 9 0.175760 TATCCACTCGGACAAGCAGC 59.824 55.000 0.00 0.00 46.79 5.25
9 10 2.672961 TTATCCACTCGGACAAGCAG 57.327 50.000 0.00 0.00 46.79 4.24
10 11 4.100963 ACATATTATCCACTCGGACAAGCA 59.899 41.667 0.00 0.00 46.79 3.91
11 12 4.632153 ACATATTATCCACTCGGACAAGC 58.368 43.478 0.00 0.00 46.79 4.01
12 13 5.923114 CAGACATATTATCCACTCGGACAAG 59.077 44.000 0.00 0.00 46.79 3.16
13 14 5.362717 ACAGACATATTATCCACTCGGACAA 59.637 40.000 0.00 0.00 46.79 3.18
14 15 4.893524 ACAGACATATTATCCACTCGGACA 59.106 41.667 0.00 0.00 46.79 4.02
15 16 5.455056 ACAGACATATTATCCACTCGGAC 57.545 43.478 0.00 0.00 46.79 4.79
17 18 7.158099 TCATACAGACATATTATCCACTCGG 57.842 40.000 0.00 0.00 0.00 4.63
18 19 9.645059 ATTTCATACAGACATATTATCCACTCG 57.355 33.333 0.00 0.00 0.00 4.18
30 31 9.553064 GAGTCCAGATAAATTTCATACAGACAT 57.447 33.333 0.00 0.00 0.00 3.06
31 32 8.539544 TGAGTCCAGATAAATTTCATACAGACA 58.460 33.333 0.00 0.00 0.00 3.41
32 33 8.821894 GTGAGTCCAGATAAATTTCATACAGAC 58.178 37.037 0.00 0.00 0.00 3.51
33 34 8.539544 TGTGAGTCCAGATAAATTTCATACAGA 58.460 33.333 0.00 0.00 0.00 3.41
34 35 8.722480 TGTGAGTCCAGATAAATTTCATACAG 57.278 34.615 0.00 0.00 0.00 2.74
35 36 9.112725 CATGTGAGTCCAGATAAATTTCATACA 57.887 33.333 0.00 0.00 0.00 2.29
36 37 9.113838 ACATGTGAGTCCAGATAAATTTCATAC 57.886 33.333 0.00 0.00 0.00 2.39
37 38 9.685276 AACATGTGAGTCCAGATAAATTTCATA 57.315 29.630 0.00 0.00 0.00 2.15
38 39 8.464404 CAACATGTGAGTCCAGATAAATTTCAT 58.536 33.333 0.00 0.00 0.00 2.57
39 40 7.448161 ACAACATGTGAGTCCAGATAAATTTCA 59.552 33.333 0.00 0.00 0.00 2.69
40 41 7.820648 ACAACATGTGAGTCCAGATAAATTTC 58.179 34.615 0.00 0.00 0.00 2.17
41 42 7.765695 ACAACATGTGAGTCCAGATAAATTT 57.234 32.000 0.00 0.00 0.00 1.82
57 58 3.844211 AGTATGGGGTCTACACAACATGT 59.156 43.478 0.00 0.00 46.06 3.21
58 59 4.487714 AGTATGGGGTCTACACAACATG 57.512 45.455 0.00 0.00 0.00 3.21
59 60 4.534500 TGAAGTATGGGGTCTACACAACAT 59.466 41.667 0.00 0.00 0.00 2.71
60 61 3.904965 TGAAGTATGGGGTCTACACAACA 59.095 43.478 0.00 0.00 0.00 3.33
61 62 4.546829 TGAAGTATGGGGTCTACACAAC 57.453 45.455 0.00 0.00 0.00 3.32
62 63 4.780554 TCATGAAGTATGGGGTCTACACAA 59.219 41.667 0.00 0.00 37.39 3.33
63 64 4.358214 TCATGAAGTATGGGGTCTACACA 58.642 43.478 0.00 0.00 37.39 3.72
64 65 5.552870 ATCATGAAGTATGGGGTCTACAC 57.447 43.478 0.00 0.00 37.39 2.90
65 66 7.872061 AATATCATGAAGTATGGGGTCTACA 57.128 36.000 0.00 0.00 37.39 2.74
66 67 9.003658 CAAAATATCATGAAGTATGGGGTCTAC 57.996 37.037 0.00 0.00 37.39 2.59
67 68 8.944138 TCAAAATATCATGAAGTATGGGGTCTA 58.056 33.333 0.00 0.00 37.39 2.59
68 69 7.721399 GTCAAAATATCATGAAGTATGGGGTCT 59.279 37.037 0.00 0.00 37.39 3.85
69 70 7.040409 GGTCAAAATATCATGAAGTATGGGGTC 60.040 40.741 0.00 0.00 37.39 4.46
70 71 6.777580 GGTCAAAATATCATGAAGTATGGGGT 59.222 38.462 0.00 0.00 37.39 4.95
71 72 6.209391 GGGTCAAAATATCATGAAGTATGGGG 59.791 42.308 0.00 0.00 37.39 4.96
72 73 7.006509 AGGGTCAAAATATCATGAAGTATGGG 58.993 38.462 0.00 0.00 37.39 4.00
73 74 8.469309 AAGGGTCAAAATATCATGAAGTATGG 57.531 34.615 0.00 0.00 37.39 2.74
74 75 9.123902 TGAAGGGTCAAAATATCATGAAGTATG 57.876 33.333 0.00 0.00 38.17 2.39
75 76 9.872684 ATGAAGGGTCAAAATATCATGAAGTAT 57.127 29.630 0.00 0.00 37.30 2.12
76 77 9.123902 CATGAAGGGTCAAAATATCATGAAGTA 57.876 33.333 0.00 0.00 44.20 2.24
77 78 7.069085 CCATGAAGGGTCAAAATATCATGAAGT 59.931 37.037 13.49 0.00 44.20 3.01
78 79 7.431249 CCATGAAGGGTCAAAATATCATGAAG 58.569 38.462 13.49 0.00 44.20 3.02
79 80 7.350744 CCATGAAGGGTCAAAATATCATGAA 57.649 36.000 13.49 0.00 44.20 2.57
80 81 6.964807 CCATGAAGGGTCAAAATATCATGA 57.035 37.500 13.49 0.00 44.20 3.07
95 96 0.625849 AACAGGTAGGCCCATGAAGG 59.374 55.000 0.00 0.00 34.66 3.46
96 97 3.117888 ACATAACAGGTAGGCCCATGAAG 60.118 47.826 0.00 0.00 34.66 3.02
97 98 2.849943 ACATAACAGGTAGGCCCATGAA 59.150 45.455 0.00 0.00 34.66 2.57
98 99 2.172505 CACATAACAGGTAGGCCCATGA 59.827 50.000 0.00 0.00 34.66 3.07
99 100 2.092429 ACACATAACAGGTAGGCCCATG 60.092 50.000 0.00 0.00 34.66 3.66
100 101 2.205342 ACACATAACAGGTAGGCCCAT 58.795 47.619 0.00 0.00 34.66 4.00
101 102 1.663911 ACACATAACAGGTAGGCCCA 58.336 50.000 0.00 0.00 34.66 5.36
102 103 3.244457 GGATACACATAACAGGTAGGCCC 60.244 52.174 0.00 0.00 34.57 5.80
103 104 3.244457 GGGATACACATAACAGGTAGGCC 60.244 52.174 0.00 0.00 39.74 5.19
104 105 3.244457 GGGGATACACATAACAGGTAGGC 60.244 52.174 0.00 0.00 42.67 3.93
105 106 4.618920 GGGGATACACATAACAGGTAGG 57.381 50.000 0.00 0.00 42.67 3.18
117 118 1.310216 GGCCGTTGTTGGGGATACAC 61.310 60.000 0.00 0.00 44.44 2.90
118 119 1.001887 GGCCGTTGTTGGGGATACA 60.002 57.895 0.00 0.00 39.74 2.29
119 120 0.746923 GAGGCCGTTGTTGGGGATAC 60.747 60.000 0.00 0.00 0.00 2.24
120 121 1.202099 TGAGGCCGTTGTTGGGGATA 61.202 55.000 0.00 0.00 0.00 2.59
121 122 1.863155 ATGAGGCCGTTGTTGGGGAT 61.863 55.000 0.00 0.00 0.00 3.85
122 123 2.534396 ATGAGGCCGTTGTTGGGGA 61.534 57.895 0.00 0.00 0.00 4.81
123 124 2.035626 ATGAGGCCGTTGTTGGGG 59.964 61.111 0.00 0.00 0.00 4.96
124 125 2.993471 GCATGAGGCCGTTGTTGGG 61.993 63.158 0.00 0.00 36.11 4.12
125 126 1.804396 TTGCATGAGGCCGTTGTTGG 61.804 55.000 0.00 0.00 43.89 3.77
126 127 0.244450 ATTGCATGAGGCCGTTGTTG 59.756 50.000 0.00 0.00 43.89 3.33
127 128 0.527565 GATTGCATGAGGCCGTTGTT 59.472 50.000 0.00 0.00 43.89 2.83
128 129 0.322816 AGATTGCATGAGGCCGTTGT 60.323 50.000 0.00 0.00 43.89 3.32
129 130 0.813184 AAGATTGCATGAGGCCGTTG 59.187 50.000 0.00 0.00 43.89 4.10
130 131 1.098050 GAAGATTGCATGAGGCCGTT 58.902 50.000 0.00 0.00 43.89 4.44
153 154 0.622136 ATGCAGTGATCCTGGCTGAA 59.378 50.000 11.63 1.35 41.81 3.02
156 157 1.453379 GCATGCAGTGATCCTGGCT 60.453 57.895 14.21 0.00 41.81 4.75
158 159 2.184830 CGGCATGCAGTGATCCTGG 61.185 63.158 21.36 0.00 41.81 4.45
161 162 1.153289 AGTCGGCATGCAGTGATCC 60.153 57.895 21.36 3.44 0.00 3.36
189 190 1.946156 CGTGCGTGATGGATCTCCG 60.946 63.158 0.00 0.00 39.43 4.63
198 199 1.083806 ATTGTGATCGCGTGCGTGAT 61.084 50.000 18.68 18.68 46.55 3.06
201 202 1.736282 TGATTGTGATCGCGTGCGT 60.736 52.632 14.47 1.52 40.74 5.24
215 216 4.192317 GGAGTTTGAGAATAGCCGTGATT 58.808 43.478 0.00 0.00 0.00 2.57
224 225 4.215399 CCTTTGTTGCGGAGTTTGAGAATA 59.785 41.667 0.00 0.00 0.00 1.75
240 241 2.042569 GGTGGGGGAGAATACCTTTGTT 59.957 50.000 0.00 0.00 0.00 2.83
246 247 3.116137 GCCGGTGGGGGAGAATACC 62.116 68.421 1.90 0.00 35.78 2.73
247 248 1.632965 AAGCCGGTGGGGGAGAATAC 61.633 60.000 1.90 0.00 35.78 1.89
261 262 0.955919 GGGGACTGTTCTTCAAGCCG 60.956 60.000 0.00 0.00 0.00 5.52
303 304 1.635844 CTCCACATACAAACGCGCTA 58.364 50.000 5.73 0.00 0.00 4.26
305 306 1.226018 GCTCCACATACAAACGCGC 60.226 57.895 5.73 0.00 0.00 6.86
306 307 0.179225 GTGCTCCACATACAAACGCG 60.179 55.000 3.53 3.53 34.08 6.01
311 322 2.563620 TCGTAAGGTGCTCCACATACAA 59.436 45.455 7.70 0.00 35.86 2.41
329 340 0.957395 CTGGCAAGGTTCTGCATCGT 60.957 55.000 0.00 0.00 44.52 3.73
338 349 3.127533 GCGATCGCTGGCAAGGTT 61.128 61.111 31.94 0.00 38.26 3.50
356 367 1.277557 GATGGAGTCCAGCAGAAGTGT 59.722 52.381 22.55 0.00 40.02 3.55
374 385 6.190587 TCTAGTGGTGGATGATATCGATGAT 58.809 40.000 8.54 0.00 0.00 2.45
377 388 4.952957 CCTCTAGTGGTGGATGATATCGAT 59.047 45.833 2.16 2.16 0.00 3.59
380 391 3.772025 CCCCTCTAGTGGTGGATGATATC 59.228 52.174 9.90 0.00 0.00 1.63
382 393 2.522705 ACCCCTCTAGTGGTGGATGATA 59.477 50.000 19.32 0.00 32.36 2.15
395 406 0.417841 AGGAAGAAGCCACCCCTCTA 59.582 55.000 0.00 0.00 0.00 2.43
422 433 0.337428 AGGCAATGGGAAAGCTGGAT 59.663 50.000 0.00 0.00 0.00 3.41
423 434 0.323725 GAGGCAATGGGAAAGCTGGA 60.324 55.000 0.00 0.00 0.00 3.86
424 435 1.325476 GGAGGCAATGGGAAAGCTGG 61.325 60.000 0.00 0.00 0.00 4.85
425 436 0.324091 AGGAGGCAATGGGAAAGCTG 60.324 55.000 0.00 0.00 0.00 4.24
426 437 0.033699 GAGGAGGCAATGGGAAAGCT 60.034 55.000 0.00 0.00 0.00 3.74
427 438 1.039785 GGAGGAGGCAATGGGAAAGC 61.040 60.000 0.00 0.00 0.00 3.51
428 439 0.332632 TGGAGGAGGCAATGGGAAAG 59.667 55.000 0.00 0.00 0.00 2.62
429 440 1.009997 ATGGAGGAGGCAATGGGAAA 58.990 50.000 0.00 0.00 0.00 3.13
430 441 0.552848 GATGGAGGAGGCAATGGGAA 59.447 55.000 0.00 0.00 0.00 3.97
431 442 1.355718 GGATGGAGGAGGCAATGGGA 61.356 60.000 0.00 0.00 0.00 4.37
432 443 1.152368 GGATGGAGGAGGCAATGGG 59.848 63.158 0.00 0.00 0.00 4.00
433 444 1.228063 CGGATGGAGGAGGCAATGG 60.228 63.158 0.00 0.00 0.00 3.16
434 445 0.816825 CACGGATGGAGGAGGCAATG 60.817 60.000 0.00 0.00 0.00 2.82
435 446 1.528824 CACGGATGGAGGAGGCAAT 59.471 57.895 0.00 0.00 0.00 3.56
436 447 2.989639 CACGGATGGAGGAGGCAA 59.010 61.111 0.00 0.00 0.00 4.52
437 448 3.785859 GCACGGATGGAGGAGGCA 61.786 66.667 0.00 0.00 0.00 4.75
438 449 4.554036 GGCACGGATGGAGGAGGC 62.554 72.222 0.00 0.00 0.00 4.70
439 450 3.866582 GGGCACGGATGGAGGAGG 61.867 72.222 0.00 0.00 0.00 4.30
440 451 2.370445 AAGGGCACGGATGGAGGAG 61.370 63.158 0.00 0.00 0.00 3.69
441 452 2.285368 AAGGGCACGGATGGAGGA 60.285 61.111 0.00 0.00 0.00 3.71
442 453 2.124570 CAAGGGCACGGATGGAGG 60.125 66.667 0.00 0.00 0.00 4.30
443 454 2.825836 GCAAGGGCACGGATGGAG 60.826 66.667 0.00 0.00 40.72 3.86
444 455 4.424711 GGCAAGGGCACGGATGGA 62.425 66.667 0.00 0.00 43.71 3.41
488 499 1.153369 TACGGATCCAAGCAGCAGC 60.153 57.895 13.41 0.00 42.56 5.25
489 500 0.461548 TCTACGGATCCAAGCAGCAG 59.538 55.000 13.41 0.00 0.00 4.24
490 501 0.175760 GTCTACGGATCCAAGCAGCA 59.824 55.000 13.41 0.00 0.00 4.41
491 502 0.872021 CGTCTACGGATCCAAGCAGC 60.872 60.000 13.41 2.15 35.37 5.25
492 503 0.456221 ACGTCTACGGATCCAAGCAG 59.544 55.000 13.41 8.05 44.95 4.24
493 504 1.674441 CTACGTCTACGGATCCAAGCA 59.326 52.381 13.41 0.00 44.95 3.91
494 505 1.599916 GCTACGTCTACGGATCCAAGC 60.600 57.143 13.41 3.40 44.95 4.01
495 506 1.001597 GGCTACGTCTACGGATCCAAG 60.002 57.143 13.41 8.67 44.95 3.61
496 507 1.027357 GGCTACGTCTACGGATCCAA 58.973 55.000 13.41 0.00 44.95 3.53
497 508 0.107066 TGGCTACGTCTACGGATCCA 60.107 55.000 13.41 6.21 44.95 3.41
498 509 1.199558 GATGGCTACGTCTACGGATCC 59.800 57.143 0.00 0.00 44.95 3.36
499 510 1.878088 TGATGGCTACGTCTACGGATC 59.122 52.381 7.50 0.00 44.95 3.36
500 511 1.880675 CTGATGGCTACGTCTACGGAT 59.119 52.381 7.50 0.00 44.95 4.18
501 512 1.306148 CTGATGGCTACGTCTACGGA 58.694 55.000 7.50 0.00 44.95 4.69
502 513 0.317938 GCTGATGGCTACGTCTACGG 60.318 60.000 7.50 0.00 39.91 4.02
503 514 0.657659 CGCTGATGGCTACGTCTACG 60.658 60.000 0.00 0.04 41.37 3.51
504 515 0.317938 CCGCTGATGGCTACGTCTAC 60.318 60.000 0.00 0.00 39.13 2.59
505 516 0.464916 TCCGCTGATGGCTACGTCTA 60.465 55.000 0.00 0.00 39.13 2.59
506 517 1.753078 TCCGCTGATGGCTACGTCT 60.753 57.895 0.00 0.00 39.13 4.18
507 518 1.589196 GTCCGCTGATGGCTACGTC 60.589 63.158 0.00 0.00 39.13 4.34
508 519 2.494918 GTCCGCTGATGGCTACGT 59.505 61.111 0.00 0.00 39.13 3.57
509 520 2.279517 GGTCCGCTGATGGCTACG 60.280 66.667 0.00 0.00 39.13 3.51
510 521 1.090052 GTTGGTCCGCTGATGGCTAC 61.090 60.000 0.00 0.00 39.13 3.58
511 522 1.220749 GTTGGTCCGCTGATGGCTA 59.779 57.895 0.00 0.00 39.13 3.93
512 523 2.045926 GTTGGTCCGCTGATGGCT 60.046 61.111 0.00 0.00 39.13 4.75
513 524 3.499737 CGTTGGTCCGCTGATGGC 61.500 66.667 0.00 0.00 37.64 4.40
514 525 1.811266 CTCGTTGGTCCGCTGATGG 60.811 63.158 0.00 0.00 0.00 3.51
515 526 0.803768 CTCTCGTTGGTCCGCTGATG 60.804 60.000 0.00 0.00 0.00 3.07
516 527 0.965866 TCTCTCGTTGGTCCGCTGAT 60.966 55.000 0.00 0.00 0.00 2.90
517 528 0.965866 ATCTCTCGTTGGTCCGCTGA 60.966 55.000 0.00 0.00 0.00 4.26
518 529 0.803768 CATCTCTCGTTGGTCCGCTG 60.804 60.000 0.00 0.00 0.00 5.18
519 530 1.513158 CATCTCTCGTTGGTCCGCT 59.487 57.895 0.00 0.00 0.00 5.52
520 531 2.167861 GCATCTCTCGTTGGTCCGC 61.168 63.158 0.00 0.00 0.00 5.54
521 532 1.078759 GTGCATCTCTCGTTGGTCCG 61.079 60.000 0.00 0.00 0.00 4.79
522 533 0.741221 GGTGCATCTCTCGTTGGTCC 60.741 60.000 0.00 0.00 0.00 4.46
523 534 0.741221 GGGTGCATCTCTCGTTGGTC 60.741 60.000 0.00 0.00 0.00 4.02
524 535 1.296715 GGGTGCATCTCTCGTTGGT 59.703 57.895 0.00 0.00 0.00 3.67
525 536 1.450312 GGGGTGCATCTCTCGTTGG 60.450 63.158 0.00 0.00 0.00 3.77
526 537 1.811266 CGGGGTGCATCTCTCGTTG 60.811 63.158 0.00 0.00 0.00 4.10
527 538 2.579201 CGGGGTGCATCTCTCGTT 59.421 61.111 0.00 0.00 0.00 3.85
528 539 4.148825 GCGGGGTGCATCTCTCGT 62.149 66.667 0.00 0.00 45.45 4.18
547 558 2.573689 CGCTCGTCGACCTTCGTC 60.574 66.667 10.58 0.00 41.35 4.20
548 559 4.755614 GCGCTCGTCGACCTTCGT 62.756 66.667 10.58 0.00 41.35 3.85
556 567 4.485208 GAAAAGCGGCGCTCGTCG 62.485 66.667 36.44 12.16 46.98 5.12
557 568 4.148645 GGAAAAGCGGCGCTCGTC 62.149 66.667 36.44 30.92 38.25 4.20
558 569 4.980805 TGGAAAAGCGGCGCTCGT 62.981 61.111 36.44 25.46 38.25 4.18
559 570 4.445545 GTGGAAAAGCGGCGCTCG 62.446 66.667 36.44 10.91 38.25 5.03
560 571 3.050275 AGTGGAAAAGCGGCGCTC 61.050 61.111 36.44 22.74 38.25 5.03
561 572 3.357079 CAGTGGAAAAGCGGCGCT 61.357 61.111 31.35 31.35 42.56 5.92
562 573 2.400896 TTTCAGTGGAAAAGCGGCGC 62.401 55.000 26.86 26.86 39.96 6.53
563 574 0.660300 GTTTCAGTGGAAAAGCGGCG 60.660 55.000 0.51 0.51 44.18 6.46
564 575 0.318699 GGTTTCAGTGGAAAAGCGGC 60.319 55.000 0.00 0.00 44.18 6.53
565 576 0.313987 GGGTTTCAGTGGAAAAGCGG 59.686 55.000 0.00 0.00 44.18 5.52
566 577 1.318576 AGGGTTTCAGTGGAAAAGCG 58.681 50.000 0.00 0.00 44.18 4.68
567 578 4.379499 CGATTAGGGTTTCAGTGGAAAAGC 60.379 45.833 0.00 0.00 44.18 3.51
568 579 4.379499 GCGATTAGGGTTTCAGTGGAAAAG 60.379 45.833 0.00 0.00 44.18 2.27
569 580 3.504520 GCGATTAGGGTTTCAGTGGAAAA 59.495 43.478 0.00 0.00 44.18 2.29
570 581 3.078837 GCGATTAGGGTTTCAGTGGAAA 58.921 45.455 0.00 0.00 40.60 3.13
571 582 2.617021 GGCGATTAGGGTTTCAGTGGAA 60.617 50.000 0.00 0.00 0.00 3.53
572 583 1.065709 GGCGATTAGGGTTTCAGTGGA 60.066 52.381 0.00 0.00 0.00 4.02
573 584 1.065418 AGGCGATTAGGGTTTCAGTGG 60.065 52.381 0.00 0.00 0.00 4.00
574 585 2.280628 GAGGCGATTAGGGTTTCAGTG 58.719 52.381 0.00 0.00 0.00 3.66
575 586 1.209747 GGAGGCGATTAGGGTTTCAGT 59.790 52.381 0.00 0.00 0.00 3.41
576 587 1.806623 CGGAGGCGATTAGGGTTTCAG 60.807 57.143 0.00 0.00 0.00 3.02
577 588 0.177141 CGGAGGCGATTAGGGTTTCA 59.823 55.000 0.00 0.00 0.00 2.69
578 589 1.158484 GCGGAGGCGATTAGGGTTTC 61.158 60.000 0.00 0.00 0.00 2.78
579 590 1.153229 GCGGAGGCGATTAGGGTTT 60.153 57.895 0.00 0.00 0.00 3.27
580 591 2.311688 CTGCGGAGGCGATTAGGGTT 62.312 60.000 0.00 0.00 44.10 4.11
581 592 2.762459 TGCGGAGGCGATTAGGGT 60.762 61.111 0.00 0.00 44.10 4.34
582 593 2.029666 CTGCGGAGGCGATTAGGG 59.970 66.667 0.00 0.00 44.10 3.53
583 594 2.029666 CCTGCGGAGGCGATTAGG 59.970 66.667 11.10 0.00 44.10 2.69
584 595 2.029666 CCCTGCGGAGGCGATTAG 59.970 66.667 19.07 0.00 44.10 1.73
585 596 3.546543 CCCCTGCGGAGGCGATTA 61.547 66.667 19.07 0.00 44.10 1.75
591 602 4.860881 TAGGAGCCCCTGCGGAGG 62.861 72.222 17.41 17.41 44.15 4.30
592 603 3.230245 CTAGGAGCCCCTGCGGAG 61.230 72.222 0.00 0.00 44.15 4.63
593 604 3.618855 AACTAGGAGCCCCTGCGGA 62.619 63.158 0.00 0.00 44.15 5.54
594 605 2.198304 AAAACTAGGAGCCCCTGCGG 62.198 60.000 0.00 0.00 44.15 5.69
595 606 0.322546 AAAAACTAGGAGCCCCTGCG 60.323 55.000 0.00 0.00 44.15 5.18
596 607 1.464734 GAAAAACTAGGAGCCCCTGC 58.535 55.000 0.00 0.00 44.15 4.85
597 608 1.679032 CCGAAAAACTAGGAGCCCCTG 60.679 57.143 0.00 0.00 44.15 4.45
598 609 0.618981 CCGAAAAACTAGGAGCCCCT 59.381 55.000 0.00 0.00 46.62 4.79
599 610 0.393944 CCCGAAAAACTAGGAGCCCC 60.394 60.000 0.00 0.00 0.00 5.80
600 611 0.616891 TCCCGAAAAACTAGGAGCCC 59.383 55.000 0.00 0.00 0.00 5.19
601 612 2.484742 TTCCCGAAAAACTAGGAGCC 57.515 50.000 0.00 0.00 0.00 4.70
602 613 2.486982 GGTTTCCCGAAAAACTAGGAGC 59.513 50.000 10.94 0.00 38.81 4.70
603 614 3.079578 GGGTTTCCCGAAAAACTAGGAG 58.920 50.000 10.94 0.00 38.81 3.69
604 615 3.144657 GGGTTTCCCGAAAAACTAGGA 57.855 47.619 10.94 0.00 38.81 2.94
616 627 4.355720 GGGTCACCCGGGTTTCCC 62.356 72.222 33.96 33.96 41.09 3.97
625 636 0.912486 AATAGCTGTGAGGGTCACCC 59.088 55.000 3.85 3.85 46.40 4.61
626 637 1.471676 CGAATAGCTGTGAGGGTCACC 60.472 57.143 0.00 0.00 46.40 4.02
627 638 2.069473 GCGAATAGCTGTGAGGGTCAC 61.069 57.143 0.00 0.00 41.24 3.67
628 639 0.175760 GCGAATAGCTGTGAGGGTCA 59.824 55.000 0.00 0.00 44.04 4.02
676 688 5.609533 TTACACCCAGCTAAGGTATTCTC 57.390 43.478 7.27 0.00 35.24 2.87
685 697 3.864243 CGTGGTAATTACACCCAGCTAA 58.136 45.455 17.16 0.00 37.84 3.09
708 720 7.283580 CCCTTGGGTTTATCATTAATTACGTGA 59.716 37.037 0.00 0.00 0.00 4.35
743 783 5.008613 GTGCAATGGAATCATATACGGTGTT 59.991 40.000 0.00 0.00 32.44 3.32
802 842 0.249699 TCGATCACCACACCACACAC 60.250 55.000 0.00 0.00 0.00 3.82
803 843 0.684535 ATCGATCACCACACCACACA 59.315 50.000 0.00 0.00 0.00 3.72
804 844 1.078709 CATCGATCACCACACCACAC 58.921 55.000 0.00 0.00 0.00 3.82
805 845 0.036483 CCATCGATCACCACACCACA 60.036 55.000 0.00 0.00 0.00 4.17
806 846 0.036388 ACCATCGATCACCACACCAC 60.036 55.000 0.00 0.00 0.00 4.16
807 847 0.036483 CACCATCGATCACCACACCA 60.036 55.000 0.00 0.00 0.00 4.17
808 848 0.036388 ACACCATCGATCACCACACC 60.036 55.000 0.00 0.00 0.00 4.16
859 906 6.040278 GCGGAGTATAAAAAGGTAGGTAGACT 59.960 42.308 0.00 0.00 0.00 3.24
900 949 2.104281 AGTACCTTCCCTTGTGTGTGTC 59.896 50.000 0.00 0.00 0.00 3.67
1016 1112 2.100631 GTGACGGATTGGGTGAGCG 61.101 63.158 0.00 0.00 0.00 5.03
1409 1555 6.531503 TGAAAAGAATGATCTCTCCTACGT 57.468 37.500 0.00 0.00 33.77 3.57
1536 1698 8.593492 AAGATTATTCTCAAGGCAAACAAAAC 57.407 30.769 0.00 0.00 0.00 2.43
1690 1860 2.422235 CCCTGCAACCCGTCCAATAATA 60.422 50.000 0.00 0.00 0.00 0.98
1743 1922 9.985730 CAGCCATATTAATACATGTCCAAATTT 57.014 29.630 0.00 0.00 0.00 1.82
1833 2014 3.813443 CAGGTAGCTGTTAGCATTGGAT 58.187 45.455 13.89 0.00 45.56 3.41
1922 2103 9.146586 ACAATGGCATATACAGAAATTAACCAT 57.853 29.630 0.00 0.00 35.76 3.55
1972 2153 6.301169 TCATTAGAAGGAAAAGAGAGACCC 57.699 41.667 0.00 0.00 0.00 4.46
1991 2172 5.620654 CGACCATTCAGCAACATCTTTCATT 60.621 40.000 0.00 0.00 0.00 2.57
2031 2212 8.042515 GGTTACATTGTTACCCAGTATACTTCA 58.957 37.037 12.90 0.00 30.08 3.02
2242 2433 5.610338 GCAAAGAAATGTAAGACTTTTGCGC 60.610 40.000 0.00 0.00 31.52 6.09
2467 2675 3.531207 CCGCCATCTGCTCTCCGA 61.531 66.667 0.00 0.00 38.05 4.55
2549 2759 2.146724 CCCACAGTGGAGGGTGACA 61.147 63.158 22.37 0.00 40.96 3.58
2587 2802 1.597461 CTTCCCTCCCTCACCGTTC 59.403 63.158 0.00 0.00 0.00 3.95
2613 2861 2.302019 GCCACTCCTAGAGGCCTTT 58.698 57.895 6.77 2.86 44.74 3.11
2703 2968 8.838365 CAAATAATTGCTTCTCTTCTGCTCTAT 58.162 33.333 0.00 0.00 0.00 1.98
2886 3158 7.112452 AGAGTGTCCCATATTAAAATTTGCC 57.888 36.000 0.00 0.00 0.00 4.52
2969 3241 9.994432 AGATTCTCGTGTTTCATTAAATTCATC 57.006 29.630 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.