Multiple sequence alignment - TraesCS6A01G334200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G334200 chr6A 100.000 3472 0 0 1 3472 564973851 564977322 0.000000e+00 6412.0
1 TraesCS6A01G334200 chr6A 92.631 2144 100 29 671 2783 564911013 564908897 0.000000e+00 3031.0
2 TraesCS6A01G334200 chr6A 92.755 1532 94 13 1149 2674 554824772 554826292 0.000000e+00 2198.0
3 TraesCS6A01G334200 chr6A 98.282 291 4 1 3183 3472 60392259 60391969 3.090000e-140 508.0
4 TraesCS6A01G334200 chr6A 96.990 299 6 2 3177 3472 556560498 556560200 1.860000e-137 499.0
5 TraesCS6A01G334200 chr6A 83.152 368 35 17 776 1136 554824112 554824459 9.360000e-81 311.0
6 TraesCS6A01G334200 chr6A 86.695 233 20 9 2539 2771 564907839 564907618 7.440000e-62 248.0
7 TraesCS6A01G334200 chr6A 85.401 137 10 4 1 128 564911579 564911444 2.170000e-27 134.0
8 TraesCS6A01G334200 chr6A 83.333 84 8 2 162 239 564911433 564911350 4.810000e-09 73.1
9 TraesCS6A01G334200 chr6D 93.221 1844 93 19 666 2489 422190398 422192229 0.000000e+00 2684.0
10 TraesCS6A01G334200 chr6D 89.685 1842 118 27 679 2493 422205740 422203944 0.000000e+00 2283.0
11 TraesCS6A01G334200 chr6D 91.906 1532 104 13 1149 2674 409347221 409348738 0.000000e+00 2124.0
12 TraesCS6A01G334200 chr6D 91.775 462 26 6 2538 2994 422192225 422192679 1.760000e-177 632.0
13 TraesCS6A01G334200 chr6D 88.010 417 25 9 1 401 422189912 422190319 1.460000e-128 470.0
14 TraesCS6A01G334200 chr6D 87.842 329 20 12 93 401 422206328 422206000 5.470000e-98 368.0
15 TraesCS6A01G334200 chr6D 83.607 366 37 13 776 1136 409346574 409346921 4.320000e-84 322.0
16 TraesCS6A01G334200 chr6D 95.833 192 8 0 2991 3182 422192732 422192923 9.360000e-81 311.0
17 TraesCS6A01G334200 chr6D 85.238 210 20 11 2545 2754 422203930 422203732 4.540000e-49 206.0
18 TraesCS6A01G334200 chr6B 92.354 1844 95 22 658 2481 636491300 636493117 0.000000e+00 2582.0
19 TraesCS6A01G334200 chr6B 91.725 1861 98 31 658 2492 636586223 636584393 0.000000e+00 2532.0
20 TraesCS6A01G334200 chr6B 89.079 1868 143 36 889 2718 614581990 614583834 0.000000e+00 2263.0
21 TraesCS6A01G334200 chr6B 89.436 1827 137 31 889 2680 614311622 614313427 0.000000e+00 2254.0
22 TraesCS6A01G334200 chr6B 89.010 1829 144 33 889 2680 614436933 614438741 0.000000e+00 2211.0
23 TraesCS6A01G334200 chr6B 97.931 290 5 1 3184 3472 707616999 707616710 5.170000e-138 501.0
24 TraesCS6A01G334200 chr6B 90.226 266 10 6 143 401 636490820 636491076 2.000000e-87 333.0
25 TraesCS6A01G334200 chr6B 90.683 161 7 4 1 153 636490488 636490648 1.260000e-49 207.0
26 TraesCS6A01G334200 chr6B 86.131 137 15 1 408 544 636491146 636491278 1.000000e-30 145.0
27 TraesCS6A01G334200 chr6B 77.559 254 45 9 1 243 614580815 614581067 3.610000e-30 143.0
28 TraesCS6A01G334200 chr6B 89.744 78 8 0 776 853 614311539 614311616 2.210000e-17 100.0
29 TraesCS6A01G334200 chr6B 89.744 78 8 0 776 853 614436850 614436927 2.210000e-17 100.0
30 TraesCS6A01G334200 chr6B 82.946 129 5 4 7 131 636586729 636586614 2.210000e-17 100.0
31 TraesCS6A01G334200 chr6B 89.231 65 7 0 789 853 614581920 614581984 7.990000e-12 82.4
32 TraesCS6A01G334200 chr7A 98.966 290 3 0 3183 3472 247267669 247267380 1.430000e-143 520.0
33 TraesCS6A01G334200 chr4B 97.659 299 4 2 3177 3472 653434774 653434476 8.600000e-141 510.0
34 TraesCS6A01G334200 chr4B 97.643 297 6 1 3177 3472 71245081 71244785 3.090000e-140 508.0
35 TraesCS6A01G334200 chr3B 97.324 299 5 2 3177 3472 273234128 273234426 4.000000e-139 505.0
36 TraesCS6A01G334200 chr7B 96.990 299 6 3 3174 3472 579513056 579512761 1.860000e-137 499.0
37 TraesCS6A01G334200 chr2B 87.296 307 22 8 3182 3471 798813793 798814099 5.550000e-88 335.0
38 TraesCS6A01G334200 chr2B 96.951 164 4 1 3174 3336 629816671 629816834 1.230000e-69 274.0
39 TraesCS6A01G334200 chr7D 97.727 44 1 0 5 48 564904811 564904768 3.720000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G334200 chr6A 564973851 564977322 3471 False 6412.000000 6412 100.000000 1 3472 1 chr6A.!!$F1 3471
1 TraesCS6A01G334200 chr6A 554824112 554826292 2180 False 1254.500000 2198 87.953500 776 2674 2 chr6A.!!$F2 1898
2 TraesCS6A01G334200 chr6A 564907618 564911579 3961 True 871.525000 3031 87.015000 1 2783 4 chr6A.!!$R3 2782
3 TraesCS6A01G334200 chr6D 409346574 409348738 2164 False 1223.000000 2124 87.756500 776 2674 2 chr6D.!!$F1 1898
4 TraesCS6A01G334200 chr6D 422189912 422192923 3011 False 1024.250000 2684 92.209750 1 3182 4 chr6D.!!$F2 3181
5 TraesCS6A01G334200 chr6D 422203732 422206328 2596 True 952.333333 2283 87.588333 93 2754 3 chr6D.!!$R1 2661
6 TraesCS6A01G334200 chr6B 636584393 636586729 2336 True 1316.000000 2532 87.335500 7 2492 2 chr6B.!!$R2 2485
7 TraesCS6A01G334200 chr6B 614311539 614313427 1888 False 1177.000000 2254 89.590000 776 2680 2 chr6B.!!$F1 1904
8 TraesCS6A01G334200 chr6B 614436850 614438741 1891 False 1155.500000 2211 89.377000 776 2680 2 chr6B.!!$F2 1904
9 TraesCS6A01G334200 chr6B 614580815 614583834 3019 False 829.466667 2263 85.289667 1 2718 3 chr6B.!!$F3 2717
10 TraesCS6A01G334200 chr6B 636490488 636493117 2629 False 816.750000 2582 89.848500 1 2481 4 chr6B.!!$F4 2480

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
402 641 0.107165 GGAATTTCCTGACCCGGAGG 60.107 60.0 0.73 0.94 40.12 4.30 F
872 1720 0.108992 TCGCACCGGAACATGTACTC 60.109 55.0 9.46 0.00 0.00 2.59 F
2137 3357 0.243365 GTCATCGTGCCATTGCCAAA 59.757 50.0 0.00 0.00 36.33 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2246 3481 1.068610 CGATCGATCTCCTCCTTCAGC 60.069 57.143 22.43 0.00 0.00 4.26 R
2414 3649 0.250295 CGACCACCTTGAAGCCTTGA 60.250 55.000 0.00 0.00 0.00 3.02 R
3349 5281 0.109723 TTCTTTAGCCAGCCGGTTGT 59.890 50.000 17.69 1.85 33.28 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 73 0.808755 GCTTATCCCACCCAACGTTG 59.191 55.000 21.47 21.47 0.00 4.10
197 396 2.082140 TCCCAGCCACATACTCGTAT 57.918 50.000 0.00 0.00 0.00 3.06
241 471 6.250344 TCGAACGAATGAATACTCGGATAT 57.750 37.500 0.00 0.00 39.38 1.63
242 472 7.368480 TCGAACGAATGAATACTCGGATATA 57.632 36.000 0.00 0.00 39.38 0.86
243 473 7.239271 TCGAACGAATGAATACTCGGATATAC 58.761 38.462 0.00 0.00 39.38 1.47
244 474 7.118825 TCGAACGAATGAATACTCGGATATACT 59.881 37.037 0.00 0.00 39.38 2.12
245 475 7.425882 CGAACGAATGAATACTCGGATATACTC 59.574 40.741 0.00 0.00 39.38 2.59
246 476 6.773080 ACGAATGAATACTCGGATATACTCG 58.227 40.000 0.00 0.00 39.38 4.18
247 477 6.183360 ACGAATGAATACTCGGATATACTCGG 60.183 42.308 0.00 0.00 39.38 4.63
248 478 6.036844 CGAATGAATACTCGGATATACTCGGA 59.963 42.308 0.00 0.00 0.00 4.55
272 502 1.187087 GTTGGTCTCTCCGGACTGAT 58.813 55.000 0.00 0.00 39.52 2.90
298 528 0.599558 TTCGAACTGGGTACTCACCG 59.400 55.000 0.00 0.00 46.86 4.94
366 600 2.300996 AGGAACGCACCTCATCCAT 58.699 52.632 0.00 0.00 34.98 3.41
367 601 0.620556 AGGAACGCACCTCATCCATT 59.379 50.000 0.00 0.00 34.98 3.16
390 629 5.550290 TCAGGAAATTTTGCCAGGAATTTC 58.450 37.500 13.20 13.20 45.11 2.17
401 640 3.478540 GGAATTTCCTGACCCGGAG 57.521 57.895 0.73 0.00 33.89 4.63
402 641 0.107165 GGAATTTCCTGACCCGGAGG 60.107 60.000 0.73 0.94 40.12 4.30
427 768 1.630878 ACTTCTCAACTGACCCCCATC 59.369 52.381 0.00 0.00 0.00 3.51
530 1320 2.252976 GGTTGGTAACCCGTAACACA 57.747 50.000 0.00 0.00 46.12 3.72
531 1321 1.872952 GGTTGGTAACCCGTAACACAC 59.127 52.381 0.00 0.00 46.12 3.82
532 1322 2.559440 GTTGGTAACCCGTAACACACA 58.441 47.619 0.00 0.00 0.00 3.72
533 1323 2.237393 TGGTAACCCGTAACACACAC 57.763 50.000 0.00 0.00 0.00 3.82
534 1324 1.483827 TGGTAACCCGTAACACACACA 59.516 47.619 0.00 0.00 0.00 3.72
535 1325 1.866601 GGTAACCCGTAACACACACAC 59.133 52.381 0.00 0.00 0.00 3.82
554 1344 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
561 1351 2.822561 ACACACACACACACAATTCCAA 59.177 40.909 0.00 0.00 0.00 3.53
570 1367 2.295909 CACACAATTCCAATTCCACCGT 59.704 45.455 0.00 0.00 0.00 4.83
582 1379 2.825861 TCCACCGTTAGAAAGGACAC 57.174 50.000 0.97 0.00 0.00 3.67
583 1380 2.322658 TCCACCGTTAGAAAGGACACT 58.677 47.619 0.97 0.00 0.00 3.55
585 1382 4.091549 TCCACCGTTAGAAAGGACACTAT 58.908 43.478 0.97 0.00 0.00 2.12
589 1386 7.046033 CCACCGTTAGAAAGGACACTATAAAT 58.954 38.462 0.97 0.00 0.00 1.40
591 1388 9.028185 CACCGTTAGAAAGGACACTATAAATAC 57.972 37.037 0.97 0.00 0.00 1.89
592 1389 8.200120 ACCGTTAGAAAGGACACTATAAATACC 58.800 37.037 0.97 0.00 0.00 2.73
593 1390 8.419442 CCGTTAGAAAGGACACTATAAATACCT 58.581 37.037 0.00 0.00 0.00 3.08
597 1394 8.611051 AGAAAGGACACTATAAATACCTGAGT 57.389 34.615 0.00 0.00 0.00 3.41
598 1395 9.047947 AGAAAGGACACTATAAATACCTGAGTT 57.952 33.333 0.00 0.00 0.00 3.01
599 1396 9.315525 GAAAGGACACTATAAATACCTGAGTTC 57.684 37.037 0.00 0.00 0.00 3.01
600 1397 8.611051 AAGGACACTATAAATACCTGAGTTCT 57.389 34.615 0.00 0.00 0.00 3.01
602 1399 7.839705 AGGACACTATAAATACCTGAGTTCTGA 59.160 37.037 0.00 0.00 0.00 3.27
603 1400 8.138712 GGACACTATAAATACCTGAGTTCTGAG 58.861 40.741 0.00 0.00 0.00 3.35
604 1401 8.012957 ACACTATAAATACCTGAGTTCTGAGG 57.987 38.462 3.89 3.89 35.26 3.86
605 1402 7.839705 ACACTATAAATACCTGAGTTCTGAGGA 59.160 37.037 11.94 0.00 33.16 3.71
606 1403 8.696374 CACTATAAATACCTGAGTTCTGAGGAA 58.304 37.037 11.94 0.00 33.16 3.36
607 1404 9.440761 ACTATAAATACCTGAGTTCTGAGGAAT 57.559 33.333 11.94 0.00 33.71 3.01
610 1407 6.882768 AATACCTGAGTTCTGAGGAATTCT 57.117 37.500 11.94 0.00 38.48 2.40
611 1408 4.550076 ACCTGAGTTCTGAGGAATTCTG 57.450 45.455 11.94 0.00 38.48 3.02
612 1409 4.163427 ACCTGAGTTCTGAGGAATTCTGA 58.837 43.478 11.94 0.00 38.46 3.27
613 1410 4.594920 ACCTGAGTTCTGAGGAATTCTGAA 59.405 41.667 11.94 0.00 40.25 3.02
614 1411 5.177326 CCTGAGTTCTGAGGAATTCTGAAG 58.823 45.833 5.23 0.84 42.27 3.02
615 1412 5.046735 CCTGAGTTCTGAGGAATTCTGAAGA 60.047 44.000 5.23 3.22 42.27 2.87
616 1413 6.352051 CCTGAGTTCTGAGGAATTCTGAAGAT 60.352 42.308 5.23 0.00 42.27 2.40
617 1414 6.404708 TGAGTTCTGAGGAATTCTGAAGATG 58.595 40.000 5.23 0.00 42.27 2.90
618 1415 6.212187 TGAGTTCTGAGGAATTCTGAAGATGA 59.788 38.462 5.23 0.00 42.27 2.92
619 1416 7.013823 AGTTCTGAGGAATTCTGAAGATGAA 57.986 36.000 5.23 0.00 42.27 2.57
620 1417 7.104939 AGTTCTGAGGAATTCTGAAGATGAAG 58.895 38.462 5.23 0.00 42.27 3.02
621 1418 5.987098 TCTGAGGAATTCTGAAGATGAAGG 58.013 41.667 5.23 0.00 31.64 3.46
622 1419 5.723405 TCTGAGGAATTCTGAAGATGAAGGA 59.277 40.000 5.23 0.00 31.64 3.36
623 1420 5.738909 TGAGGAATTCTGAAGATGAAGGAC 58.261 41.667 5.23 0.00 0.00 3.85
624 1421 5.249163 TGAGGAATTCTGAAGATGAAGGACA 59.751 40.000 5.23 0.00 0.00 4.02
625 1422 5.495640 AGGAATTCTGAAGATGAAGGACAC 58.504 41.667 5.23 0.00 0.00 3.67
626 1423 5.250313 AGGAATTCTGAAGATGAAGGACACT 59.750 40.000 5.23 0.00 0.00 3.55
627 1424 6.441924 AGGAATTCTGAAGATGAAGGACACTA 59.558 38.462 5.23 0.00 0.00 2.74
628 1425 7.127032 AGGAATTCTGAAGATGAAGGACACTAT 59.873 37.037 5.23 0.00 0.00 2.12
629 1426 8.424918 GGAATTCTGAAGATGAAGGACACTATA 58.575 37.037 5.23 0.00 0.00 1.31
630 1427 9.823647 GAATTCTGAAGATGAAGGACACTATAA 57.176 33.333 0.00 0.00 0.00 0.98
634 1431 9.823647 TCTGAAGATGAAGGACACTATAAATTC 57.176 33.333 0.00 0.00 0.00 2.17
635 1432 8.964476 TGAAGATGAAGGACACTATAAATTCC 57.036 34.615 0.00 0.00 0.00 3.01
636 1433 8.548025 TGAAGATGAAGGACACTATAAATTCCA 58.452 33.333 0.00 0.00 0.00 3.53
637 1434 8.738645 AAGATGAAGGACACTATAAATTCCAC 57.261 34.615 0.00 0.00 0.00 4.02
638 1435 7.283329 AGATGAAGGACACTATAAATTCCACC 58.717 38.462 0.00 0.00 0.00 4.61
639 1436 5.424757 TGAAGGACACTATAAATTCCACCG 58.575 41.667 0.00 0.00 0.00 4.94
640 1437 5.046159 TGAAGGACACTATAAATTCCACCGT 60.046 40.000 0.00 0.00 0.00 4.83
641 1438 5.431179 AGGACACTATAAATTCCACCGTT 57.569 39.130 0.00 0.00 0.00 4.44
642 1439 6.549433 AGGACACTATAAATTCCACCGTTA 57.451 37.500 0.00 0.00 0.00 3.18
643 1440 6.579865 AGGACACTATAAATTCCACCGTTAG 58.420 40.000 0.00 0.00 0.00 2.34
644 1441 6.155737 AGGACACTATAAATTCCACCGTTAGT 59.844 38.462 0.00 0.00 0.00 2.24
645 1442 6.257193 GGACACTATAAATTCCACCGTTAGTG 59.743 42.308 0.00 0.00 46.83 2.74
646 1443 5.583457 ACACTATAAATTCCACCGTTAGTGC 59.417 40.000 7.01 0.00 45.83 4.40
647 1444 5.583061 CACTATAAATTCCACCGTTAGTGCA 59.417 40.000 0.00 0.00 45.83 4.57
648 1445 4.957759 ATAAATTCCACCGTTAGTGCAC 57.042 40.909 9.40 9.40 45.83 4.57
649 1446 2.561478 AATTCCACCGTTAGTGCACT 57.439 45.000 25.12 25.12 45.83 4.40
650 1447 3.688694 AATTCCACCGTTAGTGCACTA 57.311 42.857 22.67 22.67 45.83 2.74
651 1448 3.688694 ATTCCACCGTTAGTGCACTAA 57.311 42.857 30.81 30.81 45.83 2.24
652 1449 3.472283 TTCCACCGTTAGTGCACTAAA 57.528 42.857 34.72 19.18 45.83 1.85
653 1450 3.034721 TCCACCGTTAGTGCACTAAAG 57.965 47.619 34.72 33.70 45.83 1.85
654 1451 2.629137 TCCACCGTTAGTGCACTAAAGA 59.371 45.455 37.92 26.15 45.83 2.52
655 1452 3.259876 TCCACCGTTAGTGCACTAAAGAT 59.740 43.478 37.92 27.59 45.83 2.40
656 1453 3.370978 CCACCGTTAGTGCACTAAAGATG 59.629 47.826 37.92 33.91 45.83 2.90
657 1454 4.242475 CACCGTTAGTGCACTAAAGATGA 58.758 43.478 37.92 18.86 40.28 2.92
658 1455 4.688879 CACCGTTAGTGCACTAAAGATGAA 59.311 41.667 37.92 19.70 40.28 2.57
659 1456 4.929808 ACCGTTAGTGCACTAAAGATGAAG 59.070 41.667 37.92 27.37 39.84 3.02
660 1457 4.330074 CCGTTAGTGCACTAAAGATGAAGG 59.670 45.833 37.92 24.96 39.84 3.46
661 1458 5.168569 CGTTAGTGCACTAAAGATGAAGGA 58.831 41.667 35.04 13.66 39.84 3.36
662 1459 5.062308 CGTTAGTGCACTAAAGATGAAGGAC 59.938 44.000 35.04 21.62 39.84 3.85
663 1460 4.623932 AGTGCACTAAAGATGAAGGACA 57.376 40.909 20.16 0.00 0.00 4.02
664 1461 4.319177 AGTGCACTAAAGATGAAGGACAC 58.681 43.478 20.16 0.00 0.00 3.67
687 1497 5.162914 ACTGTTTATTTCCCCCTAGTTTGGT 60.163 40.000 0.00 0.00 0.00 3.67
869 1717 0.526739 CGATCGCACCGGAACATGTA 60.527 55.000 9.46 0.00 0.00 2.29
870 1718 0.928229 GATCGCACCGGAACATGTAC 59.072 55.000 9.46 0.00 0.00 2.90
871 1719 0.535335 ATCGCACCGGAACATGTACT 59.465 50.000 9.46 0.00 0.00 2.73
872 1720 0.108992 TCGCACCGGAACATGTACTC 60.109 55.000 9.46 0.00 0.00 2.59
881 1729 3.745975 CGGAACATGTACTCTTTGCAAGA 59.254 43.478 0.00 0.00 35.87 3.02
1109 2004 5.485353 AGGTAAGATCATGTCCTGTCTTCAA 59.515 40.000 0.00 0.00 33.36 2.69
1900 3120 1.292061 CGTTCGACTTCACCACCAAA 58.708 50.000 0.00 0.00 0.00 3.28
1918 3138 2.045926 GGCATCCTCAACGTGGCT 60.046 61.111 0.00 0.00 35.74 4.75
2061 3281 2.754375 GCCCTTCCCTTCCGACAA 59.246 61.111 0.00 0.00 0.00 3.18
2137 3357 0.243365 GTCATCGTGCCATTGCCAAA 59.757 50.000 0.00 0.00 36.33 3.28
2190 3424 4.019681 TCCGTTCATAAGAAACCATGACCT 60.020 41.667 0.00 0.00 35.08 3.85
2195 3429 7.119262 CGTTCATAAGAAACCATGACCTAACTT 59.881 37.037 0.00 0.00 35.08 2.66
2196 3430 7.921786 TCATAAGAAACCATGACCTAACTTG 57.078 36.000 0.00 0.00 0.00 3.16
2197 3431 7.685481 TCATAAGAAACCATGACCTAACTTGA 58.315 34.615 0.00 0.00 0.00 3.02
2198 3432 7.606456 TCATAAGAAACCATGACCTAACTTGAC 59.394 37.037 0.00 0.00 0.00 3.18
2246 3481 2.565841 GATCATTTCTTCGACTGGGGG 58.434 52.381 0.00 0.00 0.00 5.40
2488 3723 9.899226 GAAAATATAAGCAAAATTATCCGAGCT 57.101 29.630 0.00 0.00 0.00 4.09
2503 3738 2.589014 CGAGCTGCTCCACAATTTTTC 58.411 47.619 22.97 0.00 0.00 2.29
2508 3743 3.862264 GCTGCTCCACAATTTTTCTTCCC 60.862 47.826 0.00 0.00 0.00 3.97
2699 3937 1.705337 ATTATGCAGCGCACGACCAC 61.705 55.000 11.47 0.00 43.04 4.16
2712 3950 1.442857 GACCACTGACTCGTGCGAG 60.443 63.158 18.57 18.57 46.91 5.03
2873 4113 5.095145 TGCTCAGCTATCAGTTCTGAATT 57.905 39.130 6.60 0.00 36.54 2.17
2892 4132 5.124457 TGAATTAACTTTGATCAGAGCTGCC 59.876 40.000 12.97 0.00 0.00 4.85
2901 4141 0.109153 TCAGAGCTGCCATGTGTTGT 59.891 50.000 0.00 0.00 0.00 3.32
2913 4153 5.048782 TGCCATGTGTTGTAGAAAATCTGAC 60.049 40.000 0.00 0.00 0.00 3.51
2978 4218 9.840427 CGGTTTCTTTCATTCAAAATATGTACT 57.160 29.630 0.00 0.00 0.00 2.73
3013 4309 3.405831 TGGAACTGAAGCTGTTCATCTG 58.594 45.455 15.08 3.33 41.96 2.90
3055 4987 2.939756 TGTTGCAGCTAAGTTTGAACGA 59.060 40.909 1.17 0.00 0.00 3.85
3081 5013 1.499049 GAACGGATAGCGGTGGATTC 58.501 55.000 0.00 0.00 0.00 2.52
3167 5099 4.664677 GCGGTCTGTCAGCGGTGT 62.665 66.667 15.22 0.00 46.51 4.16
3182 5114 2.543653 GCGGTGTGAAGCTGATTTTGTT 60.544 45.455 0.00 0.00 0.00 2.83
3183 5115 3.705604 CGGTGTGAAGCTGATTTTGTTT 58.294 40.909 0.00 0.00 0.00 2.83
3185 5117 4.566360 CGGTGTGAAGCTGATTTTGTTTTT 59.434 37.500 0.00 0.00 0.00 1.94
3218 5150 3.480133 GTACCCCGGCCTCTGCAT 61.480 66.667 0.00 0.00 40.13 3.96
3219 5151 3.161450 TACCCCGGCCTCTGCATC 61.161 66.667 0.00 0.00 40.13 3.91
3220 5152 3.993865 TACCCCGGCCTCTGCATCA 62.994 63.158 0.00 0.00 40.13 3.07
3221 5153 4.113815 CCCCGGCCTCTGCATCAA 62.114 66.667 0.00 0.00 40.13 2.57
3222 5154 2.515523 CCCGGCCTCTGCATCAAG 60.516 66.667 0.00 0.00 40.13 3.02
3223 5155 2.586245 CCGGCCTCTGCATCAAGA 59.414 61.111 0.00 0.00 40.13 3.02
3224 5156 1.078214 CCGGCCTCTGCATCAAGAA 60.078 57.895 0.00 0.00 40.13 2.52
3225 5157 0.465097 CCGGCCTCTGCATCAAGAAT 60.465 55.000 0.00 0.00 40.13 2.40
3226 5158 0.661552 CGGCCTCTGCATCAAGAATG 59.338 55.000 0.00 0.00 40.13 2.67
3227 5159 1.744798 CGGCCTCTGCATCAAGAATGA 60.745 52.381 0.00 0.00 40.13 2.57
3238 5170 2.221169 TCAAGAATGATGCATACGGCC 58.779 47.619 0.00 0.00 43.89 6.13
3239 5171 1.267806 CAAGAATGATGCATACGGCCC 59.732 52.381 0.00 0.00 43.89 5.80
3240 5172 0.767375 AGAATGATGCATACGGCCCT 59.233 50.000 0.00 0.00 43.89 5.19
3241 5173 1.160137 GAATGATGCATACGGCCCTC 58.840 55.000 0.00 0.00 43.89 4.30
3242 5174 0.767375 AATGATGCATACGGCCCTCT 59.233 50.000 0.00 0.00 43.89 3.69
3243 5175 0.767375 ATGATGCATACGGCCCTCTT 59.233 50.000 0.00 0.00 43.89 2.85
3244 5176 1.419381 TGATGCATACGGCCCTCTTA 58.581 50.000 0.00 0.00 43.89 2.10
3245 5177 1.977854 TGATGCATACGGCCCTCTTAT 59.022 47.619 0.00 0.00 43.89 1.73
3246 5178 2.371841 TGATGCATACGGCCCTCTTATT 59.628 45.455 0.00 0.00 43.89 1.40
3247 5179 3.580895 TGATGCATACGGCCCTCTTATTA 59.419 43.478 0.00 0.00 43.89 0.98
3248 5180 4.041075 TGATGCATACGGCCCTCTTATTAA 59.959 41.667 0.00 0.00 43.89 1.40
3249 5181 3.735591 TGCATACGGCCCTCTTATTAAC 58.264 45.455 0.00 0.00 43.89 2.01
3250 5182 3.072211 GCATACGGCCCTCTTATTAACC 58.928 50.000 0.00 0.00 36.11 2.85
3251 5183 3.495453 GCATACGGCCCTCTTATTAACCA 60.495 47.826 0.00 0.00 36.11 3.67
3252 5184 4.710324 CATACGGCCCTCTTATTAACCAA 58.290 43.478 0.00 0.00 0.00 3.67
3253 5185 3.724732 ACGGCCCTCTTATTAACCAAA 57.275 42.857 0.00 0.00 0.00 3.28
3254 5186 3.617284 ACGGCCCTCTTATTAACCAAAG 58.383 45.455 0.00 0.00 0.00 2.77
3255 5187 2.357952 CGGCCCTCTTATTAACCAAAGC 59.642 50.000 0.00 0.00 0.00 3.51
3256 5188 3.361786 GGCCCTCTTATTAACCAAAGCA 58.638 45.455 0.00 0.00 0.00 3.91
3257 5189 3.381590 GGCCCTCTTATTAACCAAAGCAG 59.618 47.826 0.00 0.00 0.00 4.24
3258 5190 3.181486 GCCCTCTTATTAACCAAAGCAGC 60.181 47.826 0.00 0.00 0.00 5.25
3259 5191 4.016444 CCCTCTTATTAACCAAAGCAGCA 58.984 43.478 0.00 0.00 0.00 4.41
3260 5192 4.462483 CCCTCTTATTAACCAAAGCAGCAA 59.538 41.667 0.00 0.00 0.00 3.91
3261 5193 5.047377 CCCTCTTATTAACCAAAGCAGCAAA 60.047 40.000 0.00 0.00 0.00 3.68
3262 5194 6.454795 CCTCTTATTAACCAAAGCAGCAAAA 58.545 36.000 0.00 0.00 0.00 2.44
3263 5195 7.099120 CCTCTTATTAACCAAAGCAGCAAAAT 58.901 34.615 0.00 0.00 0.00 1.82
3264 5196 7.063780 CCTCTTATTAACCAAAGCAGCAAAATG 59.936 37.037 0.00 0.00 0.00 2.32
3265 5197 7.441017 TCTTATTAACCAAAGCAGCAAAATGT 58.559 30.769 0.00 0.00 0.00 2.71
3266 5198 5.927954 ATTAACCAAAGCAGCAAAATGTG 57.072 34.783 0.00 0.00 0.00 3.21
3283 5215 8.570096 CAAAATGTGCATACAAGATTCCATAG 57.430 34.615 0.00 0.00 40.84 2.23
3284 5216 7.886629 AAATGTGCATACAAGATTCCATAGT 57.113 32.000 0.00 0.00 40.84 2.12
3285 5217 7.502120 AATGTGCATACAAGATTCCATAGTC 57.498 36.000 0.00 0.00 40.84 2.59
3286 5218 6.239217 TGTGCATACAAGATTCCATAGTCT 57.761 37.500 0.00 0.00 32.88 3.24
3287 5219 6.283694 TGTGCATACAAGATTCCATAGTCTC 58.716 40.000 0.00 0.00 32.88 3.36
3288 5220 6.127083 TGTGCATACAAGATTCCATAGTCTCA 60.127 38.462 0.00 0.00 32.88 3.27
3289 5221 6.763135 GTGCATACAAGATTCCATAGTCTCAA 59.237 38.462 0.00 0.00 0.00 3.02
3290 5222 7.280876 GTGCATACAAGATTCCATAGTCTCAAA 59.719 37.037 0.00 0.00 0.00 2.69
3291 5223 7.828717 TGCATACAAGATTCCATAGTCTCAAAA 59.171 33.333 0.00 0.00 0.00 2.44
3292 5224 8.844244 GCATACAAGATTCCATAGTCTCAAAAT 58.156 33.333 0.00 0.00 0.00 1.82
3295 5227 8.868522 ACAAGATTCCATAGTCTCAAAATCAA 57.131 30.769 0.00 0.00 0.00 2.57
3296 5228 9.300681 ACAAGATTCCATAGTCTCAAAATCAAA 57.699 29.630 0.00 0.00 0.00 2.69
3297 5229 9.565213 CAAGATTCCATAGTCTCAAAATCAAAC 57.435 33.333 0.00 0.00 0.00 2.93
3298 5230 8.868522 AGATTCCATAGTCTCAAAATCAAACA 57.131 30.769 0.00 0.00 0.00 2.83
3299 5231 9.300681 AGATTCCATAGTCTCAAAATCAAACAA 57.699 29.630 0.00 0.00 0.00 2.83
3300 5232 9.912634 GATTCCATAGTCTCAAAATCAAACAAA 57.087 29.630 0.00 0.00 0.00 2.83
3301 5233 9.918630 ATTCCATAGTCTCAAAATCAAACAAAG 57.081 29.630 0.00 0.00 0.00 2.77
3302 5234 8.690203 TCCATAGTCTCAAAATCAAACAAAGA 57.310 30.769 0.00 0.00 0.00 2.52
3303 5235 9.130661 TCCATAGTCTCAAAATCAAACAAAGAA 57.869 29.630 0.00 0.00 0.00 2.52
3304 5236 9.748708 CCATAGTCTCAAAATCAAACAAAGAAA 57.251 29.630 0.00 0.00 0.00 2.52
3308 5240 8.606602 AGTCTCAAAATCAAACAAAGAAAATGC 58.393 29.630 0.00 0.00 0.00 3.56
3309 5241 8.389603 GTCTCAAAATCAAACAAAGAAAATGCA 58.610 29.630 0.00 0.00 0.00 3.96
3310 5242 8.605746 TCTCAAAATCAAACAAAGAAAATGCAG 58.394 29.630 0.00 0.00 0.00 4.41
3311 5243 7.188157 TCAAAATCAAACAAAGAAAATGCAGC 58.812 30.769 0.00 0.00 0.00 5.25
3312 5244 5.678132 AATCAAACAAAGAAAATGCAGCC 57.322 34.783 0.00 0.00 0.00 4.85
3313 5245 3.465871 TCAAACAAAGAAAATGCAGCCC 58.534 40.909 0.00 0.00 0.00 5.19
3314 5246 3.118482 TCAAACAAAGAAAATGCAGCCCA 60.118 39.130 0.00 0.00 0.00 5.36
3315 5247 3.775261 AACAAAGAAAATGCAGCCCAT 57.225 38.095 0.00 0.00 35.06 4.00
3316 5248 4.888326 AACAAAGAAAATGCAGCCCATA 57.112 36.364 0.00 0.00 32.67 2.74
3317 5249 5.425196 AACAAAGAAAATGCAGCCCATAT 57.575 34.783 0.00 0.00 32.67 1.78
3318 5250 5.014808 ACAAAGAAAATGCAGCCCATATC 57.985 39.130 0.00 0.00 32.67 1.63
3319 5251 3.996150 AAGAAAATGCAGCCCATATCG 57.004 42.857 0.00 0.00 32.67 2.92
3320 5252 3.213206 AGAAAATGCAGCCCATATCGA 57.787 42.857 0.00 0.00 32.67 3.59
3321 5253 2.880890 AGAAAATGCAGCCCATATCGAC 59.119 45.455 0.00 0.00 32.67 4.20
3322 5254 2.346766 AAATGCAGCCCATATCGACA 57.653 45.000 0.00 0.00 32.67 4.35
3323 5255 1.597742 AATGCAGCCCATATCGACAC 58.402 50.000 0.00 0.00 32.67 3.67
3324 5256 0.469494 ATGCAGCCCATATCGACACA 59.531 50.000 0.00 0.00 30.69 3.72
3325 5257 0.461870 TGCAGCCCATATCGACACAC 60.462 55.000 0.00 0.00 0.00 3.82
3326 5258 0.461870 GCAGCCCATATCGACACACA 60.462 55.000 0.00 0.00 0.00 3.72
3327 5259 1.575244 CAGCCCATATCGACACACAG 58.425 55.000 0.00 0.00 0.00 3.66
3328 5260 1.136891 CAGCCCATATCGACACACAGA 59.863 52.381 0.00 0.00 0.00 3.41
3329 5261 1.137086 AGCCCATATCGACACACAGAC 59.863 52.381 0.00 0.00 0.00 3.51
3330 5262 1.137086 GCCCATATCGACACACAGACT 59.863 52.381 0.00 0.00 0.00 3.24
3331 5263 2.361119 GCCCATATCGACACACAGACTA 59.639 50.000 0.00 0.00 0.00 2.59
3332 5264 3.551046 GCCCATATCGACACACAGACTAG 60.551 52.174 0.00 0.00 0.00 2.57
3333 5265 3.551046 CCCATATCGACACACAGACTAGC 60.551 52.174 0.00 0.00 0.00 3.42
3334 5266 3.551046 CCATATCGACACACAGACTAGCC 60.551 52.174 0.00 0.00 0.00 3.93
3335 5267 1.545841 ATCGACACACAGACTAGCCA 58.454 50.000 0.00 0.00 0.00 4.75
3336 5268 0.881796 TCGACACACAGACTAGCCAG 59.118 55.000 0.00 0.00 0.00 4.85
3337 5269 0.881796 CGACACACAGACTAGCCAGA 59.118 55.000 0.00 0.00 0.00 3.86
3338 5270 1.269723 CGACACACAGACTAGCCAGAA 59.730 52.381 0.00 0.00 0.00 3.02
3339 5271 2.288213 CGACACACAGACTAGCCAGAAA 60.288 50.000 0.00 0.00 0.00 2.52
3340 5272 3.615110 CGACACACAGACTAGCCAGAAAT 60.615 47.826 0.00 0.00 0.00 2.17
3341 5273 4.380550 CGACACACAGACTAGCCAGAAATA 60.381 45.833 0.00 0.00 0.00 1.40
3342 5274 5.479306 GACACACAGACTAGCCAGAAATAA 58.521 41.667 0.00 0.00 0.00 1.40
3343 5275 5.865085 ACACACAGACTAGCCAGAAATAAA 58.135 37.500 0.00 0.00 0.00 1.40
3344 5276 6.296026 ACACACAGACTAGCCAGAAATAAAA 58.704 36.000 0.00 0.00 0.00 1.52
3345 5277 6.942576 ACACACAGACTAGCCAGAAATAAAAT 59.057 34.615 0.00 0.00 0.00 1.82
3346 5278 7.094634 ACACACAGACTAGCCAGAAATAAAATG 60.095 37.037 0.00 0.00 0.00 2.32
3347 5279 6.127897 ACACAGACTAGCCAGAAATAAAATGC 60.128 38.462 0.00 0.00 0.00 3.56
3348 5280 5.358160 ACAGACTAGCCAGAAATAAAATGCC 59.642 40.000 0.00 0.00 0.00 4.40
3349 5281 5.357878 CAGACTAGCCAGAAATAAAATGCCA 59.642 40.000 0.00 0.00 0.00 4.92
3350 5282 5.358160 AGACTAGCCAGAAATAAAATGCCAC 59.642 40.000 0.00 0.00 0.00 5.01
3351 5283 5.016173 ACTAGCCAGAAATAAAATGCCACA 58.984 37.500 0.00 0.00 0.00 4.17
3352 5284 4.888326 AGCCAGAAATAAAATGCCACAA 57.112 36.364 0.00 0.00 0.00 3.33
3353 5285 4.568956 AGCCAGAAATAAAATGCCACAAC 58.431 39.130 0.00 0.00 0.00 3.32
3354 5286 3.684305 GCCAGAAATAAAATGCCACAACC 59.316 43.478 0.00 0.00 0.00 3.77
3355 5287 3.925913 CCAGAAATAAAATGCCACAACCG 59.074 43.478 0.00 0.00 0.00 4.44
3356 5288 3.925913 CAGAAATAAAATGCCACAACCGG 59.074 43.478 0.00 0.00 0.00 5.28
3364 5296 2.033448 CCACAACCGGCTGGCTAA 59.967 61.111 12.89 0.00 39.70 3.09
3366 5298 1.586154 CCACAACCGGCTGGCTAAAG 61.586 60.000 12.89 0.00 39.70 1.85
3370 5302 0.690762 AACCGGCTGGCTAAAGAAGA 59.309 50.000 12.89 0.00 39.70 2.87
3375 5307 2.365617 CGGCTGGCTAAAGAAGATAGGA 59.634 50.000 0.00 0.00 0.00 2.94
3376 5308 3.181465 CGGCTGGCTAAAGAAGATAGGAA 60.181 47.826 0.00 0.00 0.00 3.36
3379 5311 5.066634 GGCTGGCTAAAGAAGATAGGAAAAC 59.933 44.000 0.00 0.00 0.00 2.43
3380 5312 5.883115 GCTGGCTAAAGAAGATAGGAAAACT 59.117 40.000 0.00 0.00 0.00 2.66
3382 5314 7.553044 GCTGGCTAAAGAAGATAGGAAAACTAA 59.447 37.037 0.00 0.00 34.79 2.24
3386 5318 9.723447 GCTAAAGAAGATAGGAAAACTAATTGC 57.277 33.333 0.00 0.00 34.79 3.56
3406 5338 7.621428 ATTGCATATCCTATTACATGACTGC 57.379 36.000 0.00 0.00 0.00 4.40
3408 5340 5.012975 TGCATATCCTATTACATGACTGCCA 59.987 40.000 0.00 0.00 0.00 4.92
3409 5341 6.118170 GCATATCCTATTACATGACTGCCAT 58.882 40.000 0.00 0.00 35.44 4.40
3411 5343 4.623932 TCCTATTACATGACTGCCATCC 57.376 45.455 0.00 0.00 31.94 3.51
3413 5345 4.411869 TCCTATTACATGACTGCCATCCAA 59.588 41.667 0.00 0.00 31.94 3.53
3414 5346 5.104151 TCCTATTACATGACTGCCATCCAAA 60.104 40.000 0.00 0.00 31.94 3.28
3415 5347 4.989279 ATTACATGACTGCCATCCAAAC 57.011 40.909 0.00 0.00 31.94 2.93
3416 5348 1.549203 ACATGACTGCCATCCAAACC 58.451 50.000 0.00 0.00 31.94 3.27
3417 5349 0.452987 CATGACTGCCATCCAAACCG 59.547 55.000 0.00 0.00 31.94 4.44
3418 5350 0.680921 ATGACTGCCATCCAAACCGG 60.681 55.000 0.00 0.00 0.00 5.28
3419 5351 1.303317 GACTGCCATCCAAACCGGT 60.303 57.895 0.00 0.00 35.57 5.28
3421 5353 1.178534 ACTGCCATCCAAACCGGTTG 61.179 55.000 23.08 14.70 36.94 3.77
3425 5357 1.904287 CCATCCAAACCGGTTGAAGA 58.096 50.000 23.08 17.89 39.87 2.87
3427 5359 3.616219 CCATCCAAACCGGTTGAAGATA 58.384 45.455 23.08 4.03 39.87 1.98
3428 5360 4.013728 CCATCCAAACCGGTTGAAGATAA 58.986 43.478 23.08 2.92 39.87 1.75
3429 5361 4.142469 CCATCCAAACCGGTTGAAGATAAC 60.142 45.833 23.08 0.00 39.87 1.89
3430 5362 3.414269 TCCAAACCGGTTGAAGATAACC 58.586 45.455 23.08 0.00 45.28 2.85
3431 5363 2.490509 CCAAACCGGTTGAAGATAACCC 59.509 50.000 23.08 0.00 45.84 4.11
3432 5364 2.103537 AACCGGTTGAAGATAACCCG 57.896 50.000 21.56 0.00 45.84 5.28
3433 5365 1.269012 ACCGGTTGAAGATAACCCGA 58.731 50.000 0.00 0.00 45.84 5.14
3434 5366 1.206371 ACCGGTTGAAGATAACCCGAG 59.794 52.381 0.00 0.00 45.84 4.63
3435 5367 1.287425 CGGTTGAAGATAACCCGAGC 58.713 55.000 0.00 0.00 45.84 5.03
3436 5368 1.404986 CGGTTGAAGATAACCCGAGCA 60.405 52.381 0.00 0.00 45.84 4.26
3437 5369 2.280628 GGTTGAAGATAACCCGAGCAG 58.719 52.381 0.00 0.00 43.44 4.24
3438 5370 1.666189 GTTGAAGATAACCCGAGCAGC 59.334 52.381 0.00 0.00 0.00 5.25
3439 5371 0.178068 TGAAGATAACCCGAGCAGCC 59.822 55.000 0.00 0.00 0.00 4.85
3440 5372 0.178068 GAAGATAACCCGAGCAGCCA 59.822 55.000 0.00 0.00 0.00 4.75
3441 5373 0.839946 AAGATAACCCGAGCAGCCAT 59.160 50.000 0.00 0.00 0.00 4.40
3442 5374 0.394565 AGATAACCCGAGCAGCCATC 59.605 55.000 0.00 0.00 0.00 3.51
3448 5380 2.815945 CCGAGCAGCCATCTCCCAT 61.816 63.158 0.00 0.00 0.00 4.00
3449 5381 1.301558 CGAGCAGCCATCTCCCATC 60.302 63.158 0.00 0.00 0.00 3.51
3450 5382 1.301558 GAGCAGCCATCTCCCATCG 60.302 63.158 0.00 0.00 0.00 3.84
3451 5383 2.281345 GCAGCCATCTCCCATCGG 60.281 66.667 0.00 0.00 0.00 4.18
3452 5384 2.429058 CAGCCATCTCCCATCGGG 59.571 66.667 0.00 0.00 46.11 5.14
3454 5386 1.121407 CAGCCATCTCCCATCGGGTA 61.121 60.000 0.00 0.00 44.74 3.69
3456 5388 0.832135 GCCATCTCCCATCGGGTAGA 60.832 60.000 0.00 1.72 44.74 2.59
3457 5389 0.969894 CCATCTCCCATCGGGTAGAC 59.030 60.000 0.00 0.00 44.74 2.59
3458 5390 0.969894 CATCTCCCATCGGGTAGACC 59.030 60.000 0.00 0.00 44.74 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 90 1.733389 GCCCTCGACGTCGTTTATTCA 60.733 52.381 34.40 14.87 40.80 2.57
84 91 0.919300 GCCCTCGACGTCGTTTATTC 59.081 55.000 34.40 17.26 40.80 1.75
85 92 0.529378 AGCCCTCGACGTCGTTTATT 59.471 50.000 34.40 17.47 40.80 1.40
86 93 0.179145 CAGCCCTCGACGTCGTTTAT 60.179 55.000 34.40 16.87 40.80 1.40
91 106 4.717629 TTGCAGCCCTCGACGTCG 62.718 66.667 31.30 31.30 41.45 5.12
117 133 1.084370 CCGAGGACTTCCGAATGCAC 61.084 60.000 0.00 0.00 42.08 4.57
197 396 1.618343 TGAGCATTGAGTTCGTGAGGA 59.382 47.619 0.00 0.00 0.00 3.71
241 471 2.027745 AGAGACCAACGTACTCCGAGTA 60.028 50.000 4.01 4.01 40.70 2.59
242 472 1.163554 GAGACCAACGTACTCCGAGT 58.836 55.000 6.25 6.25 40.70 4.18
243 473 1.397692 GAGAGACCAACGTACTCCGAG 59.602 57.143 0.00 0.00 40.70 4.63
244 474 1.446907 GAGAGACCAACGTACTCCGA 58.553 55.000 0.00 0.00 40.70 4.55
245 475 0.450983 GGAGAGACCAACGTACTCCG 59.549 60.000 0.00 0.00 36.55 4.63
246 476 0.450983 CGGAGAGACCAACGTACTCC 59.549 60.000 0.00 0.00 39.91 3.85
247 477 0.450983 CCGGAGAGACCAACGTACTC 59.549 60.000 0.00 0.00 38.90 2.59
248 478 0.037303 TCCGGAGAGACCAACGTACT 59.963 55.000 0.00 0.00 38.90 2.73
249 479 0.169894 GTCCGGAGAGACCAACGTAC 59.830 60.000 3.06 0.00 38.90 3.67
252 482 1.213013 CAGTCCGGAGAGACCAACG 59.787 63.158 3.06 0.00 37.49 4.10
272 502 5.754890 GTGAGTACCCAGTTCGAACTTTTTA 59.245 40.000 27.79 15.22 37.08 1.52
298 528 4.301628 CCAGCATTGTTCAGAAACTTTCC 58.698 43.478 0.00 0.00 36.30 3.13
366 600 5.565455 AATTCCTGGCAAAATTTCCTGAA 57.435 34.783 0.00 0.00 0.00 3.02
367 601 5.550290 GAAATTCCTGGCAAAATTTCCTGA 58.450 37.500 23.95 0.00 42.22 3.86
390 629 1.757340 GTACTCCCTCCGGGTCAGG 60.757 68.421 0.00 0.00 44.74 3.86
401 640 2.234168 GGGTCAGTTGAGAAGTACTCCC 59.766 54.545 0.00 0.00 44.34 4.30
402 641 2.234168 GGGGTCAGTTGAGAAGTACTCC 59.766 54.545 0.00 0.00 44.34 3.85
403 642 2.234168 GGGGGTCAGTTGAGAAGTACTC 59.766 54.545 0.00 0.00 45.11 2.59
406 742 2.409064 TGGGGGTCAGTTGAGAAGTA 57.591 50.000 0.00 0.00 0.00 2.24
522 1312 1.727335 TGTGTGTGTGTGTGTGTTACG 59.273 47.619 0.00 0.00 0.00 3.18
523 1313 2.480802 TGTGTGTGTGTGTGTGTGTTAC 59.519 45.455 0.00 0.00 0.00 2.50
524 1314 2.480802 GTGTGTGTGTGTGTGTGTGTTA 59.519 45.455 0.00 0.00 0.00 2.41
525 1315 1.265635 GTGTGTGTGTGTGTGTGTGTT 59.734 47.619 0.00 0.00 0.00 3.32
526 1316 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
527 1317 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
528 1318 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
529 1319 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
530 1320 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
531 1321 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
532 1322 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
533 1323 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
534 1324 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
535 1325 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
554 1344 5.185056 CCTTTCTAACGGTGGAATTGGAATT 59.815 40.000 11.83 0.00 0.00 2.17
561 1351 3.326880 AGTGTCCTTTCTAACGGTGGAAT 59.673 43.478 0.00 0.00 0.00 3.01
585 1382 8.260818 CAGAATTCCTCAGAACTCAGGTATTTA 58.739 37.037 0.65 0.00 31.76 1.40
589 1386 5.333581 TCAGAATTCCTCAGAACTCAGGTA 58.666 41.667 0.65 0.00 30.53 3.08
591 1388 4.815533 TCAGAATTCCTCAGAACTCAGG 57.184 45.455 0.65 0.00 30.53 3.86
592 1389 6.035368 TCTTCAGAATTCCTCAGAACTCAG 57.965 41.667 0.65 0.00 30.53 3.35
593 1390 6.212187 TCATCTTCAGAATTCCTCAGAACTCA 59.788 38.462 0.65 0.00 30.53 3.41
595 1392 6.617782 TCATCTTCAGAATTCCTCAGAACT 57.382 37.500 0.65 0.00 33.97 3.01
596 1393 6.315891 CCTTCATCTTCAGAATTCCTCAGAAC 59.684 42.308 0.65 0.00 33.97 3.01
597 1394 6.214208 TCCTTCATCTTCAGAATTCCTCAGAA 59.786 38.462 0.65 1.40 36.15 3.02
598 1395 5.723405 TCCTTCATCTTCAGAATTCCTCAGA 59.277 40.000 0.65 1.25 0.00 3.27
599 1396 5.816777 GTCCTTCATCTTCAGAATTCCTCAG 59.183 44.000 0.65 0.00 0.00 3.35
600 1397 5.249163 TGTCCTTCATCTTCAGAATTCCTCA 59.751 40.000 0.65 0.00 0.00 3.86
602 1399 5.250313 AGTGTCCTTCATCTTCAGAATTCCT 59.750 40.000 0.65 0.00 0.00 3.36
603 1400 5.495640 AGTGTCCTTCATCTTCAGAATTCC 58.504 41.667 0.65 0.00 0.00 3.01
604 1401 9.823647 TTATAGTGTCCTTCATCTTCAGAATTC 57.176 33.333 0.00 0.00 0.00 2.17
608 1405 9.823647 GAATTTATAGTGTCCTTCATCTTCAGA 57.176 33.333 0.00 0.00 0.00 3.27
609 1406 9.050601 GGAATTTATAGTGTCCTTCATCTTCAG 57.949 37.037 0.00 0.00 0.00 3.02
610 1407 8.548025 TGGAATTTATAGTGTCCTTCATCTTCA 58.452 33.333 0.00 0.00 0.00 3.02
611 1408 8.831550 GTGGAATTTATAGTGTCCTTCATCTTC 58.168 37.037 0.00 0.00 0.00 2.87
612 1409 7.775561 GGTGGAATTTATAGTGTCCTTCATCTT 59.224 37.037 0.00 0.00 0.00 2.40
613 1410 7.283329 GGTGGAATTTATAGTGTCCTTCATCT 58.717 38.462 0.00 0.00 0.00 2.90
614 1411 6.202954 CGGTGGAATTTATAGTGTCCTTCATC 59.797 42.308 0.00 0.00 0.00 2.92
615 1412 6.055588 CGGTGGAATTTATAGTGTCCTTCAT 58.944 40.000 0.00 0.00 0.00 2.57
616 1413 5.046159 ACGGTGGAATTTATAGTGTCCTTCA 60.046 40.000 0.00 0.00 0.00 3.02
617 1414 5.425630 ACGGTGGAATTTATAGTGTCCTTC 58.574 41.667 0.00 0.00 0.00 3.46
618 1415 5.431179 ACGGTGGAATTTATAGTGTCCTT 57.569 39.130 0.00 0.00 0.00 3.36
619 1416 5.431179 AACGGTGGAATTTATAGTGTCCT 57.569 39.130 0.00 0.00 0.00 3.85
620 1417 6.257193 CACTAACGGTGGAATTTATAGTGTCC 59.743 42.308 0.00 0.00 41.90 4.02
621 1418 6.238022 GCACTAACGGTGGAATTTATAGTGTC 60.238 42.308 11.71 4.02 45.44 3.67
622 1419 5.583457 GCACTAACGGTGGAATTTATAGTGT 59.417 40.000 11.71 0.00 45.44 3.55
623 1420 5.583061 TGCACTAACGGTGGAATTTATAGTG 59.417 40.000 0.00 7.61 43.13 2.74
624 1421 5.736813 TGCACTAACGGTGGAATTTATAGT 58.263 37.500 0.00 0.00 43.13 2.12
633 1430 2.629137 TCTTTAGTGCACTAACGGTGGA 59.371 45.455 33.52 22.77 45.44 4.02
634 1431 3.034721 TCTTTAGTGCACTAACGGTGG 57.965 47.619 33.52 21.28 45.44 4.61
636 1433 4.530710 TCATCTTTAGTGCACTAACGGT 57.469 40.909 33.52 26.69 38.09 4.83
637 1434 4.330074 CCTTCATCTTTAGTGCACTAACGG 59.670 45.833 33.52 27.31 38.09 4.44
638 1435 5.062308 GTCCTTCATCTTTAGTGCACTAACG 59.938 44.000 33.52 30.73 38.09 3.18
639 1436 5.932303 TGTCCTTCATCTTTAGTGCACTAAC 59.068 40.000 33.52 20.92 38.09 2.34
640 1437 5.932303 GTGTCCTTCATCTTTAGTGCACTAA 59.068 40.000 30.81 30.81 36.72 2.24
641 1438 5.246203 AGTGTCCTTCATCTTTAGTGCACTA 59.754 40.000 22.67 22.67 32.60 2.74
642 1439 4.040952 AGTGTCCTTCATCTTTAGTGCACT 59.959 41.667 25.12 25.12 0.00 4.40
643 1440 4.153117 CAGTGTCCTTCATCTTTAGTGCAC 59.847 45.833 9.40 9.40 0.00 4.57
644 1441 4.202357 ACAGTGTCCTTCATCTTTAGTGCA 60.202 41.667 0.00 0.00 0.00 4.57
645 1442 4.319177 ACAGTGTCCTTCATCTTTAGTGC 58.681 43.478 0.00 0.00 0.00 4.40
646 1443 6.867662 AAACAGTGTCCTTCATCTTTAGTG 57.132 37.500 0.00 0.00 0.00 2.74
647 1444 9.574516 AAATAAACAGTGTCCTTCATCTTTAGT 57.425 29.630 0.00 0.00 0.00 2.24
649 1446 9.010029 GGAAATAAACAGTGTCCTTCATCTTTA 57.990 33.333 0.00 0.00 0.00 1.85
650 1447 7.039714 GGGAAATAAACAGTGTCCTTCATCTTT 60.040 37.037 0.00 0.00 0.00 2.52
651 1448 6.434340 GGGAAATAAACAGTGTCCTTCATCTT 59.566 38.462 0.00 0.00 0.00 2.40
652 1449 5.946377 GGGAAATAAACAGTGTCCTTCATCT 59.054 40.000 0.00 0.00 0.00 2.90
653 1450 5.125578 GGGGAAATAAACAGTGTCCTTCATC 59.874 44.000 0.00 0.00 0.00 2.92
654 1451 5.016831 GGGGAAATAAACAGTGTCCTTCAT 58.983 41.667 0.00 0.00 0.00 2.57
655 1452 4.403734 GGGGAAATAAACAGTGTCCTTCA 58.596 43.478 0.00 0.00 0.00 3.02
656 1453 3.762288 GGGGGAAATAAACAGTGTCCTTC 59.238 47.826 0.00 0.00 0.00 3.46
657 1454 3.401342 AGGGGGAAATAAACAGTGTCCTT 59.599 43.478 0.00 0.00 0.00 3.36
658 1455 2.993863 AGGGGGAAATAAACAGTGTCCT 59.006 45.455 0.00 0.00 0.00 3.85
659 1456 3.451402 AGGGGGAAATAAACAGTGTCC 57.549 47.619 0.00 0.00 0.00 4.02
660 1457 5.175388 ACTAGGGGGAAATAAACAGTGTC 57.825 43.478 0.00 0.00 0.00 3.67
661 1458 5.594199 AACTAGGGGGAAATAAACAGTGT 57.406 39.130 0.00 0.00 0.00 3.55
662 1459 5.185056 CCAAACTAGGGGGAAATAAACAGTG 59.815 44.000 0.00 0.00 0.00 3.66
663 1460 5.162914 ACCAAACTAGGGGGAAATAAACAGT 60.163 40.000 0.00 0.00 0.00 3.55
664 1461 5.185056 CACCAAACTAGGGGGAAATAAACAG 59.815 44.000 0.00 0.00 0.00 3.16
674 1471 0.768622 TCACACACCAAACTAGGGGG 59.231 55.000 0.00 0.00 35.95 5.40
687 1497 4.344968 TGAGAATTCCTCAGAACTCACACA 59.655 41.667 0.65 0.00 46.38 3.72
718 1528 4.038763 CCAATACGGCTGTCAGTTATCCTA 59.961 45.833 0.00 0.00 0.00 2.94
747 1564 1.134371 GGAGCCACCCTTGTATGAGAC 60.134 57.143 0.00 0.00 0.00 3.36
997 1850 1.398451 CGAGTGTTTGTTCGCCATGAC 60.398 52.381 0.00 0.00 0.00 3.06
1095 1969 5.542779 GTGTAGAAGTTGAAGACAGGACAT 58.457 41.667 0.00 0.00 0.00 3.06
1109 2004 5.183331 ACATGATCACAGTACGTGTAGAAGT 59.817 40.000 14.51 8.73 46.44 3.01
1160 2370 1.228552 AGTTGAAACCCTGCCGCAT 60.229 52.632 0.00 0.00 0.00 4.73
1900 3120 2.045926 GCCACGTTGAGGATGCCT 60.046 61.111 0.00 0.00 36.03 4.75
1918 3138 4.007644 CACAGCTCGCCCTCCACA 62.008 66.667 0.00 0.00 0.00 4.17
2061 3281 1.447643 GCGTATCCCTGCATGACCT 59.552 57.895 0.00 0.00 0.00 3.85
2165 3387 3.930229 TCATGGTTTCTTATGAACGGACG 59.070 43.478 0.00 0.00 30.84 4.79
2166 3388 4.094442 GGTCATGGTTTCTTATGAACGGAC 59.906 45.833 0.00 0.00 35.29 4.79
2246 3481 1.068610 CGATCGATCTCCTCCTTCAGC 60.069 57.143 22.43 0.00 0.00 4.26
2414 3649 0.250295 CGACCACCTTGAAGCCTTGA 60.250 55.000 0.00 0.00 0.00 3.02
2488 3723 3.575805 AGGGAAGAAAAATTGTGGAGCA 58.424 40.909 0.00 0.00 0.00 4.26
2503 3738 7.911651 AGGTGTGACATTCATATATAGGGAAG 58.088 38.462 0.00 0.00 0.00 3.46
2699 3937 2.563427 TGCTCTCGCACGAGTCAG 59.437 61.111 18.67 11.37 42.25 3.51
2712 3950 1.390565 AGCTTGGAGATTGCATGCTC 58.609 50.000 20.33 9.17 43.63 4.26
2777 4015 5.620738 TCCATGCTTTCTTATGTAGAGCT 57.379 39.130 0.00 0.00 33.51 4.09
2873 4113 3.701205 TGGCAGCTCTGATCAAAGTTA 57.299 42.857 0.00 0.00 0.00 2.24
2978 4218 5.164620 TCAGTTCCATCATACTTTGCTCA 57.835 39.130 0.00 0.00 0.00 4.26
3013 4309 3.944871 CCACACTTTGGTGCAACTC 57.055 52.632 2.04 0.00 46.57 3.01
3055 4987 1.591594 CGCTATCCGTTCGCCACAT 60.592 57.895 0.00 0.00 0.00 3.21
3081 5013 1.453155 ACTAGAATTTGCAGCCCACG 58.547 50.000 0.00 0.00 0.00 4.94
3201 5133 3.462199 GATGCAGAGGCCGGGGTAC 62.462 68.421 2.18 0.00 40.13 3.34
3202 5134 3.161450 GATGCAGAGGCCGGGGTA 61.161 66.667 2.18 0.00 40.13 3.69
3204 5136 4.113815 TTGATGCAGAGGCCGGGG 62.114 66.667 2.18 0.00 40.13 5.73
3205 5137 2.515523 CTTGATGCAGAGGCCGGG 60.516 66.667 2.18 0.00 40.13 5.73
3206 5138 0.465097 ATTCTTGATGCAGAGGCCGG 60.465 55.000 0.00 0.00 40.13 6.13
3207 5139 0.661552 CATTCTTGATGCAGAGGCCG 59.338 55.000 0.00 0.00 40.13 6.13
3208 5140 2.048444 TCATTCTTGATGCAGAGGCC 57.952 50.000 0.00 0.00 40.13 5.19
3217 5149 2.816087 GGCCGTATGCATCATTCTTGAT 59.184 45.455 0.19 0.00 43.51 2.57
3218 5150 2.221169 GGCCGTATGCATCATTCTTGA 58.779 47.619 0.19 0.00 43.89 3.02
3219 5151 1.267806 GGGCCGTATGCATCATTCTTG 59.732 52.381 0.19 0.00 43.89 3.02
3220 5152 1.143684 AGGGCCGTATGCATCATTCTT 59.856 47.619 0.19 0.00 43.89 2.52
3221 5153 0.767375 AGGGCCGTATGCATCATTCT 59.233 50.000 0.19 0.00 43.89 2.40
3222 5154 1.160137 GAGGGCCGTATGCATCATTC 58.840 55.000 0.19 0.00 43.89 2.67
3223 5155 0.767375 AGAGGGCCGTATGCATCATT 59.233 50.000 0.19 0.00 43.89 2.57
3224 5156 0.767375 AAGAGGGCCGTATGCATCAT 59.233 50.000 0.19 0.00 43.89 2.45
3225 5157 1.419381 TAAGAGGGCCGTATGCATCA 58.581 50.000 0.19 0.00 43.89 3.07
3226 5158 2.770164 ATAAGAGGGCCGTATGCATC 57.230 50.000 0.19 0.00 43.89 3.91
3227 5159 4.324267 GTTAATAAGAGGGCCGTATGCAT 58.676 43.478 3.79 3.79 43.89 3.96
3228 5160 3.495453 GGTTAATAAGAGGGCCGTATGCA 60.495 47.826 0.00 0.00 43.89 3.96
3229 5161 3.072211 GGTTAATAAGAGGGCCGTATGC 58.928 50.000 0.00 0.00 40.16 3.14
3230 5162 4.345859 TGGTTAATAAGAGGGCCGTATG 57.654 45.455 0.00 0.00 0.00 2.39
3231 5163 5.374071 CTTTGGTTAATAAGAGGGCCGTAT 58.626 41.667 0.00 0.00 0.00 3.06
3232 5164 4.773013 CTTTGGTTAATAAGAGGGCCGTA 58.227 43.478 0.00 0.00 0.00 4.02
3233 5165 3.617284 CTTTGGTTAATAAGAGGGCCGT 58.383 45.455 0.00 0.00 0.00 5.68
3234 5166 2.357952 GCTTTGGTTAATAAGAGGGCCG 59.642 50.000 0.00 0.00 0.00 6.13
3235 5167 3.361786 TGCTTTGGTTAATAAGAGGGCC 58.638 45.455 0.00 0.00 0.00 5.80
3236 5168 3.181486 GCTGCTTTGGTTAATAAGAGGGC 60.181 47.826 0.00 0.00 0.00 5.19
3237 5169 4.016444 TGCTGCTTTGGTTAATAAGAGGG 58.984 43.478 0.00 0.00 0.00 4.30
3238 5170 5.643379 TTGCTGCTTTGGTTAATAAGAGG 57.357 39.130 0.00 0.00 0.00 3.69
3239 5171 7.599998 ACATTTTGCTGCTTTGGTTAATAAGAG 59.400 33.333 0.00 0.00 0.00 2.85
3240 5172 7.384660 CACATTTTGCTGCTTTGGTTAATAAGA 59.615 33.333 0.00 0.00 0.00 2.10
3241 5173 7.512297 CACATTTTGCTGCTTTGGTTAATAAG 58.488 34.615 0.00 0.00 0.00 1.73
3242 5174 7.418840 CACATTTTGCTGCTTTGGTTAATAA 57.581 32.000 0.00 0.00 0.00 1.40
3244 5176 5.927954 CACATTTTGCTGCTTTGGTTAAT 57.072 34.783 0.00 0.00 0.00 1.40
3258 5190 8.192774 ACTATGGAATCTTGTATGCACATTTTG 58.807 33.333 0.00 0.00 33.76 2.44
3259 5191 8.297470 ACTATGGAATCTTGTATGCACATTTT 57.703 30.769 0.00 0.00 33.76 1.82
3260 5192 7.776969 AGACTATGGAATCTTGTATGCACATTT 59.223 33.333 0.00 0.00 33.76 2.32
3261 5193 7.285566 AGACTATGGAATCTTGTATGCACATT 58.714 34.615 0.00 0.00 33.76 2.71
3262 5194 6.835174 AGACTATGGAATCTTGTATGCACAT 58.165 36.000 0.00 0.00 33.76 3.21
3263 5195 6.127083 TGAGACTATGGAATCTTGTATGCACA 60.127 38.462 0.00 0.00 0.00 4.57
3264 5196 6.283694 TGAGACTATGGAATCTTGTATGCAC 58.716 40.000 0.00 0.00 0.00 4.57
3265 5197 6.484364 TGAGACTATGGAATCTTGTATGCA 57.516 37.500 0.00 0.00 0.00 3.96
3266 5198 7.792374 TTTGAGACTATGGAATCTTGTATGC 57.208 36.000 0.00 0.00 0.00 3.14
3269 5201 9.958180 TTGATTTTGAGACTATGGAATCTTGTA 57.042 29.630 0.00 0.00 0.00 2.41
3270 5202 8.868522 TTGATTTTGAGACTATGGAATCTTGT 57.131 30.769 0.00 0.00 0.00 3.16
3271 5203 9.565213 GTTTGATTTTGAGACTATGGAATCTTG 57.435 33.333 0.00 0.00 0.00 3.02
3272 5204 9.300681 TGTTTGATTTTGAGACTATGGAATCTT 57.699 29.630 0.00 0.00 0.00 2.40
3273 5205 8.868522 TGTTTGATTTTGAGACTATGGAATCT 57.131 30.769 0.00 0.00 0.00 2.40
3274 5206 9.912634 TTTGTTTGATTTTGAGACTATGGAATC 57.087 29.630 0.00 0.00 0.00 2.52
3275 5207 9.918630 CTTTGTTTGATTTTGAGACTATGGAAT 57.081 29.630 0.00 0.00 0.00 3.01
3276 5208 9.130661 TCTTTGTTTGATTTTGAGACTATGGAA 57.869 29.630 0.00 0.00 0.00 3.53
3277 5209 8.690203 TCTTTGTTTGATTTTGAGACTATGGA 57.310 30.769 0.00 0.00 0.00 3.41
3278 5210 9.748708 TTTCTTTGTTTGATTTTGAGACTATGG 57.251 29.630 0.00 0.00 0.00 2.74
3282 5214 8.606602 GCATTTTCTTTGTTTGATTTTGAGACT 58.393 29.630 0.00 0.00 0.00 3.24
3283 5215 8.389603 TGCATTTTCTTTGTTTGATTTTGAGAC 58.610 29.630 0.00 0.00 0.00 3.36
3284 5216 8.489990 TGCATTTTCTTTGTTTGATTTTGAGA 57.510 26.923 0.00 0.00 0.00 3.27
3285 5217 7.375017 GCTGCATTTTCTTTGTTTGATTTTGAG 59.625 33.333 0.00 0.00 0.00 3.02
3286 5218 7.188157 GCTGCATTTTCTTTGTTTGATTTTGA 58.812 30.769 0.00 0.00 0.00 2.69
3287 5219 6.415573 GGCTGCATTTTCTTTGTTTGATTTTG 59.584 34.615 0.50 0.00 0.00 2.44
3288 5220 6.459985 GGGCTGCATTTTCTTTGTTTGATTTT 60.460 34.615 0.50 0.00 0.00 1.82
3289 5221 5.008911 GGGCTGCATTTTCTTTGTTTGATTT 59.991 36.000 0.50 0.00 0.00 2.17
3290 5222 4.516321 GGGCTGCATTTTCTTTGTTTGATT 59.484 37.500 0.50 0.00 0.00 2.57
3291 5223 4.067192 GGGCTGCATTTTCTTTGTTTGAT 58.933 39.130 0.50 0.00 0.00 2.57
3292 5224 3.118482 TGGGCTGCATTTTCTTTGTTTGA 60.118 39.130 0.50 0.00 0.00 2.69
3293 5225 3.204526 TGGGCTGCATTTTCTTTGTTTG 58.795 40.909 0.50 0.00 0.00 2.93
3294 5226 3.557228 TGGGCTGCATTTTCTTTGTTT 57.443 38.095 0.50 0.00 0.00 2.83
3295 5227 3.775261 ATGGGCTGCATTTTCTTTGTT 57.225 38.095 0.50 0.00 0.00 2.83
3296 5228 4.440525 CGATATGGGCTGCATTTTCTTTGT 60.441 41.667 0.50 0.00 0.00 2.83
3297 5229 4.046462 CGATATGGGCTGCATTTTCTTTG 58.954 43.478 0.50 0.00 0.00 2.77
3298 5230 3.953612 TCGATATGGGCTGCATTTTCTTT 59.046 39.130 0.50 0.00 0.00 2.52
3299 5231 3.316308 GTCGATATGGGCTGCATTTTCTT 59.684 43.478 0.50 0.00 0.00 2.52
3300 5232 2.880890 GTCGATATGGGCTGCATTTTCT 59.119 45.455 0.50 0.00 0.00 2.52
3301 5233 2.618241 TGTCGATATGGGCTGCATTTTC 59.382 45.455 0.50 0.00 0.00 2.29
3302 5234 2.358898 GTGTCGATATGGGCTGCATTTT 59.641 45.455 0.50 0.00 0.00 1.82
3303 5235 1.949525 GTGTCGATATGGGCTGCATTT 59.050 47.619 0.50 0.00 0.00 2.32
3304 5236 1.134128 TGTGTCGATATGGGCTGCATT 60.134 47.619 0.50 0.00 0.00 3.56
3305 5237 0.469494 TGTGTCGATATGGGCTGCAT 59.531 50.000 0.50 0.00 0.00 3.96
3306 5238 0.461870 GTGTGTCGATATGGGCTGCA 60.462 55.000 0.50 0.00 0.00 4.41
3307 5239 0.461870 TGTGTGTCGATATGGGCTGC 60.462 55.000 0.00 0.00 0.00 5.25
3308 5240 1.136891 TCTGTGTGTCGATATGGGCTG 59.863 52.381 0.00 0.00 0.00 4.85
3309 5241 1.137086 GTCTGTGTGTCGATATGGGCT 59.863 52.381 0.00 0.00 0.00 5.19
3310 5242 1.137086 AGTCTGTGTGTCGATATGGGC 59.863 52.381 0.00 0.00 0.00 5.36
3311 5243 3.551046 GCTAGTCTGTGTGTCGATATGGG 60.551 52.174 0.00 0.00 0.00 4.00
3312 5244 3.551046 GGCTAGTCTGTGTGTCGATATGG 60.551 52.174 0.00 0.00 0.00 2.74
3313 5245 3.066760 TGGCTAGTCTGTGTGTCGATATG 59.933 47.826 0.00 0.00 0.00 1.78
3314 5246 3.288092 TGGCTAGTCTGTGTGTCGATAT 58.712 45.455 0.00 0.00 0.00 1.63
3315 5247 2.683362 CTGGCTAGTCTGTGTGTCGATA 59.317 50.000 0.00 0.00 0.00 2.92
3316 5248 1.474478 CTGGCTAGTCTGTGTGTCGAT 59.526 52.381 0.00 0.00 0.00 3.59
3317 5249 0.881796 CTGGCTAGTCTGTGTGTCGA 59.118 55.000 0.00 0.00 0.00 4.20
3318 5250 0.881796 TCTGGCTAGTCTGTGTGTCG 59.118 55.000 0.00 0.00 0.00 4.35
3319 5251 3.386768 TTTCTGGCTAGTCTGTGTGTC 57.613 47.619 0.00 0.00 0.00 3.67
3320 5252 5.483685 TTATTTCTGGCTAGTCTGTGTGT 57.516 39.130 0.00 0.00 0.00 3.72
3321 5253 6.801539 TTTTATTTCTGGCTAGTCTGTGTG 57.198 37.500 0.00 0.00 0.00 3.82
3322 5254 6.127897 GCATTTTATTTCTGGCTAGTCTGTGT 60.128 38.462 0.00 0.00 0.00 3.72
3323 5255 6.261118 GCATTTTATTTCTGGCTAGTCTGTG 58.739 40.000 0.00 0.00 0.00 3.66
3324 5256 5.358160 GGCATTTTATTTCTGGCTAGTCTGT 59.642 40.000 0.00 0.00 33.09 3.41
3325 5257 5.357878 TGGCATTTTATTTCTGGCTAGTCTG 59.642 40.000 0.00 0.00 36.50 3.51
3326 5258 5.358160 GTGGCATTTTATTTCTGGCTAGTCT 59.642 40.000 0.00 0.00 36.50 3.24
3327 5259 5.125417 TGTGGCATTTTATTTCTGGCTAGTC 59.875 40.000 0.00 0.00 36.50 2.59
3328 5260 5.016173 TGTGGCATTTTATTTCTGGCTAGT 58.984 37.500 0.00 0.00 36.50 2.57
3329 5261 5.581126 TGTGGCATTTTATTTCTGGCTAG 57.419 39.130 0.00 0.00 36.50 3.42
3330 5262 5.337169 GGTTGTGGCATTTTATTTCTGGCTA 60.337 40.000 0.00 0.00 36.50 3.93
3331 5263 4.563374 GGTTGTGGCATTTTATTTCTGGCT 60.563 41.667 0.00 0.00 36.50 4.75
3332 5264 3.684305 GGTTGTGGCATTTTATTTCTGGC 59.316 43.478 0.00 0.00 36.12 4.85
3333 5265 3.925913 CGGTTGTGGCATTTTATTTCTGG 59.074 43.478 0.00 0.00 0.00 3.86
3334 5266 3.925913 CCGGTTGTGGCATTTTATTTCTG 59.074 43.478 0.00 0.00 0.00 3.02
3335 5267 4.186856 CCGGTTGTGGCATTTTATTTCT 57.813 40.909 0.00 0.00 0.00 2.52
3347 5279 1.586154 CTTTAGCCAGCCGGTTGTGG 61.586 60.000 17.69 15.43 36.85 4.17
3348 5280 0.605319 TCTTTAGCCAGCCGGTTGTG 60.605 55.000 17.69 9.73 33.28 3.33
3349 5281 0.109723 TTCTTTAGCCAGCCGGTTGT 59.890 50.000 17.69 1.85 33.28 3.32
3350 5282 0.804989 CTTCTTTAGCCAGCCGGTTG 59.195 55.000 11.98 11.98 33.28 3.77
3351 5283 0.690762 TCTTCTTTAGCCAGCCGGTT 59.309 50.000 1.90 0.00 33.28 4.44
3352 5284 0.912486 ATCTTCTTTAGCCAGCCGGT 59.088 50.000 1.90 0.00 33.28 5.28
3353 5285 2.548920 CCTATCTTCTTTAGCCAGCCGG 60.549 54.545 0.00 0.00 0.00 6.13
3354 5286 2.365617 TCCTATCTTCTTTAGCCAGCCG 59.634 50.000 0.00 0.00 0.00 5.52
3355 5287 4.423625 TTCCTATCTTCTTTAGCCAGCC 57.576 45.455 0.00 0.00 0.00 4.85
3356 5288 5.883115 AGTTTTCCTATCTTCTTTAGCCAGC 59.117 40.000 0.00 0.00 0.00 4.85
3357 5289 9.620259 ATTAGTTTTCCTATCTTCTTTAGCCAG 57.380 33.333 0.00 0.00 0.00 4.85
3358 5290 9.975218 AATTAGTTTTCCTATCTTCTTTAGCCA 57.025 29.630 0.00 0.00 0.00 4.75
3360 5292 9.723447 GCAATTAGTTTTCCTATCTTCTTTAGC 57.277 33.333 0.00 0.00 0.00 3.09
3380 5312 9.166173 GCAGTCATGTAATAGGATATGCAATTA 57.834 33.333 0.00 0.00 35.80 1.40
3382 5314 6.600822 GGCAGTCATGTAATAGGATATGCAAT 59.399 38.462 0.00 0.00 36.78 3.56
3386 5318 6.765036 GGATGGCAGTCATGTAATAGGATATG 59.235 42.308 0.00 0.00 35.97 1.78
3387 5319 6.444816 TGGATGGCAGTCATGTAATAGGATAT 59.555 38.462 0.00 0.00 35.97 1.63
3389 5321 4.598807 TGGATGGCAGTCATGTAATAGGAT 59.401 41.667 0.00 0.00 35.97 3.24
3394 5326 3.701040 GGTTTGGATGGCAGTCATGTAAT 59.299 43.478 0.00 0.00 35.97 1.89
3396 5328 2.722094 GGTTTGGATGGCAGTCATGTA 58.278 47.619 0.00 0.00 35.97 2.29
3398 5330 0.452987 CGGTTTGGATGGCAGTCATG 59.547 55.000 0.00 0.00 35.97 3.07
3399 5331 0.680921 CCGGTTTGGATGGCAGTCAT 60.681 55.000 0.00 0.00 42.00 3.06
3401 5333 0.893727 AACCGGTTTGGATGGCAGTC 60.894 55.000 15.86 0.00 42.00 3.51
3402 5334 1.152830 AACCGGTTTGGATGGCAGT 59.847 52.632 15.86 0.00 42.00 4.40
3403 5335 0.893270 TCAACCGGTTTGGATGGCAG 60.893 55.000 19.55 2.80 40.78 4.85
3404 5336 0.468214 TTCAACCGGTTTGGATGGCA 60.468 50.000 19.55 0.00 40.78 4.92
3406 5338 1.904287 TCTTCAACCGGTTTGGATGG 58.096 50.000 19.55 5.30 40.78 3.51
3408 5340 4.014406 GGTTATCTTCAACCGGTTTGGAT 58.986 43.478 19.55 21.16 42.00 3.41
3409 5341 3.414269 GGTTATCTTCAACCGGTTTGGA 58.586 45.455 19.55 15.86 42.00 3.53
3417 5349 2.280628 CTGCTCGGGTTATCTTCAACC 58.719 52.381 0.00 0.00 46.15 3.77
3418 5350 1.666189 GCTGCTCGGGTTATCTTCAAC 59.334 52.381 0.00 0.00 0.00 3.18
3419 5351 1.406887 GGCTGCTCGGGTTATCTTCAA 60.407 52.381 0.00 0.00 0.00 2.69
3421 5353 0.178068 TGGCTGCTCGGGTTATCTTC 59.822 55.000 0.00 0.00 0.00 2.87
3425 5357 0.394565 GAGATGGCTGCTCGGGTTAT 59.605 55.000 0.00 0.00 0.00 1.89
3427 5359 2.586792 GAGATGGCTGCTCGGGTT 59.413 61.111 0.00 0.00 0.00 4.11
3428 5360 3.474570 GGAGATGGCTGCTCGGGT 61.475 66.667 0.00 0.00 33.19 5.28
3429 5361 4.247380 GGGAGATGGCTGCTCGGG 62.247 72.222 0.00 0.00 33.19 5.14
3430 5362 2.728443 GATGGGAGATGGCTGCTCGG 62.728 65.000 0.00 0.00 33.19 4.63
3431 5363 1.301558 GATGGGAGATGGCTGCTCG 60.302 63.158 0.00 0.00 33.19 5.03
3432 5364 1.301558 CGATGGGAGATGGCTGCTC 60.302 63.158 0.00 0.00 32.36 4.26
3433 5365 2.815945 CCGATGGGAGATGGCTGCT 61.816 63.158 0.00 0.00 34.06 4.24
3434 5366 2.281345 CCGATGGGAGATGGCTGC 60.281 66.667 0.00 0.00 34.06 5.25
3435 5367 3.045533 CTACCCGATGGGAGATGGCTG 62.046 61.905 9.30 0.00 46.90 4.85
3436 5368 0.833834 CTACCCGATGGGAGATGGCT 60.834 60.000 9.30 0.00 46.90 4.75
3437 5369 1.674057 CTACCCGATGGGAGATGGC 59.326 63.158 9.30 0.00 46.90 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.