Multiple sequence alignment - TraesCS6A01G333600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G333600 chr6A 100.000 5907 0 0 1 5907 564715150 564721056 0.000000e+00 10909.0
1 TraesCS6A01G333600 chr6B 90.123 4374 250 63 1 4297 635167423 635171691 0.000000e+00 5517.0
2 TraesCS6A01G333600 chr6B 88.955 842 42 18 4529 5343 635171925 635172742 0.000000e+00 992.0
3 TraesCS6A01G333600 chr6B 91.892 185 11 3 4300 4483 635171736 635171917 7.600000e-64 255.0
4 TraesCS6A01G333600 chr6B 85.965 171 10 6 5389 5555 635172751 635172911 2.830000e-38 171.0
5 TraesCS6A01G333600 chr6B 90.000 60 4 2 5629 5687 212568703 212568645 6.350000e-10 76.8
6 TraesCS6A01G333600 chr6D 94.633 2180 108 5 2124 4297 421881205 421883381 0.000000e+00 3369.0
7 TraesCS6A01G333600 chr6D 87.608 1961 120 58 34 1900 421879148 421881079 0.000000e+00 2161.0
8 TraesCS6A01G333600 chr6D 89.891 1286 68 24 4292 5555 421883412 421884657 0.000000e+00 1598.0
9 TraesCS6A01G333600 chr6D 88.679 53 6 0 5647 5699 88314131 88314079 1.370000e-06 65.8
10 TraesCS6A01G333600 chr7A 78.977 352 32 26 1084 1396 126576869 126577217 1.000000e-47 202.0
11 TraesCS6A01G333600 chr7D 87.647 170 16 4 1084 1252 123653639 123653804 6.040000e-45 193.0
12 TraesCS6A01G333600 chr7B 92.248 129 8 2 1084 1211 85128033 85128160 1.310000e-41 182.0
13 TraesCS6A01G333600 chr2B 79.114 158 27 6 5539 5694 146928963 146928810 2.910000e-18 104.0
14 TraesCS6A01G333600 chrUn 88.679 53 6 0 5548 5600 79935492 79935544 1.370000e-06 65.8
15 TraesCS6A01G333600 chr1A 86.792 53 7 0 5647 5699 58490282 58490230 6.390000e-05 60.2
16 TraesCS6A01G333600 chr2A 87.500 48 6 0 5647 5694 765473213 765473260 8.270000e-04 56.5
17 TraesCS6A01G333600 chr3A 87.234 47 6 0 5647 5693 22479785 22479739 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G333600 chr6A 564715150 564721056 5906 False 10909.00 10909 100.000000 1 5907 1 chr6A.!!$F1 5906
1 TraesCS6A01G333600 chr6B 635167423 635172911 5488 False 1733.75 5517 89.233750 1 5555 4 chr6B.!!$F1 5554
2 TraesCS6A01G333600 chr6D 421879148 421884657 5509 False 2376.00 3369 90.710667 34 5555 3 chr6D.!!$F1 5521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
584 606 0.168128 CAGATTTGGGTTTCGTCGCC 59.832 55.000 0.00 0.00 0.00 5.54 F
712 746 0.892063 GCCCACCTCCGATCTCTATC 59.108 60.000 0.00 0.00 0.00 2.08 F
1905 2019 0.824109 TGCTATCGTGCTGTTAGCCT 59.176 50.000 13.48 0.00 42.68 4.58 F
2779 2950 0.111061 TCCAGTGGCAGCTGTCAAAT 59.889 50.000 25.10 12.38 34.84 2.32 F
3050 3221 1.202568 TCTAATGTGCAGGCGGAGATG 60.203 52.381 0.00 0.00 0.00 2.90 F
4426 4643 0.530870 GGTTATGGTCTCTCGCCTGC 60.531 60.000 0.00 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1737 1851 0.035820 AAACATACGGCATCGGTGGT 60.036 50.000 0.00 0.00 41.39 4.16 R
2661 2831 0.312102 AAAAAGACCGCTCTTGCTGC 59.688 50.000 0.00 0.00 36.80 5.25 R
3264 3436 2.959516 TCATGACATTGACAGGTCGAC 58.040 47.619 7.13 7.13 36.83 4.20 R
4176 4350 0.682209 AATAGCAAGCCAGGCACAGG 60.682 55.000 15.80 0.32 38.40 4.00 R
4782 5011 0.248702 GGCAGATCCTCTTCGACGTC 60.249 60.000 5.18 5.18 0.00 4.34 R
5845 6096 0.035056 CGGAAGGAAGCAGGTGGAAT 60.035 55.000 0.00 0.00 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
133 134 4.530857 CGCCACGTCCCATCTCCC 62.531 72.222 0.00 0.00 0.00 4.30
135 136 2.365635 CCACGTCCCATCTCCCCT 60.366 66.667 0.00 0.00 0.00 4.79
326 328 3.414700 CACGTTCCGCTCAGTGGC 61.415 66.667 0.00 0.00 32.51 5.01
381 383 3.857038 CACCCCCGTATCCACCCG 61.857 72.222 0.00 0.00 0.00 5.28
528 534 1.676967 GAGGCAAAGCTCAGTGGGG 60.677 63.158 0.00 0.00 0.00 4.96
584 606 0.168128 CAGATTTGGGTTTCGTCGCC 59.832 55.000 0.00 0.00 0.00 5.54
657 679 2.453054 GTCCTCCCCTACCACCCA 59.547 66.667 0.00 0.00 0.00 4.51
712 746 0.892063 GCCCACCTCCGATCTCTATC 59.108 60.000 0.00 0.00 0.00 2.08
713 747 1.551452 CCCACCTCCGATCTCTATCC 58.449 60.000 0.00 0.00 0.00 2.59
714 748 1.551452 CCACCTCCGATCTCTATCCC 58.449 60.000 0.00 0.00 0.00 3.85
715 749 1.076350 CCACCTCCGATCTCTATCCCT 59.924 57.143 0.00 0.00 0.00 4.20
716 750 2.442413 CACCTCCGATCTCTATCCCTC 58.558 57.143 0.00 0.00 0.00 4.30
717 751 2.041081 CACCTCCGATCTCTATCCCTCT 59.959 54.545 0.00 0.00 0.00 3.69
718 752 2.041081 ACCTCCGATCTCTATCCCTCTG 59.959 54.545 0.00 0.00 0.00 3.35
719 753 2.041081 CCTCCGATCTCTATCCCTCTGT 59.959 54.545 0.00 0.00 0.00 3.41
720 754 3.343617 CTCCGATCTCTATCCCTCTGTC 58.656 54.545 0.00 0.00 0.00 3.51
721 755 2.040545 TCCGATCTCTATCCCTCTGTCC 59.959 54.545 0.00 0.00 0.00 4.02
736 770 2.771943 TCTGTCCCTCTCTCTCTCTCTC 59.228 54.545 0.00 0.00 0.00 3.20
795 836 1.651987 CGGATCCGCTCTTGCTAAAA 58.348 50.000 23.37 0.00 36.97 1.52
906 958 1.734137 CTCCCCATCACGAGTACCG 59.266 63.158 0.00 2.71 45.44 4.02
968 1033 3.354499 CTGACTCGCGGCGCTTTTC 62.354 63.158 30.54 21.27 0.00 2.29
975 1040 2.644707 CGGCGCTTTTCGATTCGC 60.645 61.111 7.64 11.05 45.99 4.70
1050 1134 2.697761 CCAGCATCAGCAGCACCAC 61.698 63.158 0.00 0.00 45.49 4.16
1359 1461 2.159240 CGACATGATGTTCTTCGGAGGA 60.159 50.000 0.00 0.00 0.00 3.71
1422 1536 4.680537 ACGCTCGGGGAGGTCACT 62.681 66.667 0.00 0.00 0.00 3.41
1626 1740 2.711899 ATACGGCCAGGGAGGAGGA 61.712 63.158 2.24 0.00 41.22 3.71
1640 1754 2.854032 AGGAGGTGGTGGTGGTGG 60.854 66.667 0.00 0.00 0.00 4.61
1641 1755 3.175710 GGAGGTGGTGGTGGTGGT 61.176 66.667 0.00 0.00 0.00 4.16
1642 1756 2.113139 GAGGTGGTGGTGGTGGTG 59.887 66.667 0.00 0.00 0.00 4.17
1737 1851 3.573772 CTTGTCCTCGCTGTCGCCA 62.574 63.158 0.00 0.00 35.26 5.69
1800 1914 2.354729 CCACCGGCCATGGAGAAA 59.645 61.111 18.40 0.00 39.87 2.52
1902 2016 7.413475 AATTCTATTGCTATCGTGCTGTTAG 57.587 36.000 0.00 0.00 0.00 2.34
1903 2017 4.299155 TCTATTGCTATCGTGCTGTTAGC 58.701 43.478 10.72 10.72 43.32 3.09
1904 2018 1.651987 TTGCTATCGTGCTGTTAGCC 58.348 50.000 13.48 0.00 42.68 3.93
1905 2019 0.824109 TGCTATCGTGCTGTTAGCCT 59.176 50.000 13.48 0.00 42.68 4.58
1906 2020 1.212616 GCTATCGTGCTGTTAGCCTG 58.787 55.000 0.00 0.00 41.51 4.85
1907 2021 1.471676 GCTATCGTGCTGTTAGCCTGT 60.472 52.381 0.00 0.00 41.51 4.00
1908 2022 2.893637 CTATCGTGCTGTTAGCCTGTT 58.106 47.619 0.00 0.00 41.51 3.16
1909 2023 3.737047 GCTATCGTGCTGTTAGCCTGTTA 60.737 47.826 0.00 0.00 41.51 2.41
1915 2029 3.678548 GTGCTGTTAGCCTGTTACTGTAC 59.321 47.826 0.00 0.00 41.51 2.90
1920 2034 6.592607 GCTGTTAGCCTGTTACTGTACATAAA 59.407 38.462 0.00 0.00 34.48 1.40
1977 2096 4.608470 CGTGTTGCGCAATCATATATGTTC 59.392 41.667 27.79 9.05 0.00 3.18
2027 2146 1.666888 GCACAACAGCAGCGCTAAAAT 60.667 47.619 10.99 0.00 36.40 1.82
2028 2147 1.980844 CACAACAGCAGCGCTAAAATG 59.019 47.619 10.99 9.25 36.40 2.32
2035 2197 1.330829 GCAGCGCTAAAATGGGTACTC 59.669 52.381 10.99 0.00 0.00 2.59
2036 2198 1.940613 CAGCGCTAAAATGGGTACTCC 59.059 52.381 10.99 0.00 0.00 3.85
2054 2216 8.803397 GGTACTCCCTCTGTAAACAAATATTT 57.197 34.615 0.00 0.00 0.00 1.40
2055 2217 9.895138 GGTACTCCCTCTGTAAACAAATATTTA 57.105 33.333 0.00 0.00 0.00 1.40
2058 2220 9.975218 ACTCCCTCTGTAAACAAATATTTATGT 57.025 29.630 0.00 0.00 0.00 2.29
2150 2312 3.148026 TGTAAAATCGACGTCGGCATA 57.852 42.857 35.05 18.42 40.29 3.14
2156 2318 2.917701 TCGACGTCGGCATACTAAAA 57.082 45.000 35.05 11.26 40.29 1.52
2183 2345 7.475015 ACAAAGGATACAAACATGAATGATCG 58.525 34.615 0.00 0.00 41.41 3.69
2222 2387 3.262135 TCGAAAACGTTGAATCTTGGC 57.738 42.857 0.00 0.00 0.00 4.52
2240 2405 5.705441 TCTTGGCGAGAACAATTTCTAACAT 59.295 36.000 0.76 0.00 42.53 2.71
2271 2436 2.734673 CTTGCCGTCGAGCTTCTGC 61.735 63.158 0.00 0.00 40.05 4.26
2301 2466 9.383519 TCTTGGATAATCGATATTGGCTAAATC 57.616 33.333 0.00 0.00 0.00 2.17
2397 2562 2.173569 AGGAGTTGCAGAGAAAACAGGT 59.826 45.455 0.00 0.00 0.00 4.00
2398 2563 3.391296 AGGAGTTGCAGAGAAAACAGGTA 59.609 43.478 0.00 0.00 0.00 3.08
2399 2564 3.498777 GGAGTTGCAGAGAAAACAGGTAC 59.501 47.826 0.00 0.00 0.00 3.34
2422 2587 2.042464 TGATACATCTCCTGGCCACTC 58.958 52.381 0.00 0.00 0.00 3.51
2459 2629 6.833839 TGTATTTGTATTGTACTTCGGCAAC 58.166 36.000 0.00 0.00 0.00 4.17
2495 2665 7.550906 AGCATTCCTTTCTATTTGTGAGTAGTC 59.449 37.037 0.00 0.00 0.00 2.59
2607 2777 4.232221 CCTGCAGCATTTAACAAAGTCAG 58.768 43.478 8.66 0.00 0.00 3.51
2636 2806 5.679734 TCAAAGAGAGAACAAATCACAGC 57.320 39.130 0.00 0.00 0.00 4.40
2661 2831 7.535258 GCATGTTTTCAACTACAAGTCTACATG 59.465 37.037 0.00 0.00 41.04 3.21
2671 2841 2.021355 AGTCTACATGCAGCAAGAGC 57.979 50.000 4.23 0.00 42.56 4.09
2736 2907 7.491048 GTGAATTTCCACAAAGCTAAAACTCAA 59.509 33.333 0.00 0.00 37.04 3.02
2776 2947 1.227943 GTTCCAGTGGCAGCTGTCA 60.228 57.895 19.08 19.08 34.84 3.58
2779 2950 0.111061 TCCAGTGGCAGCTGTCAAAT 59.889 50.000 25.10 12.38 34.84 2.32
2799 2970 9.974750 GTCAAATTACTTCAGTGCTAAGTATTC 57.025 33.333 5.52 0.00 38.77 1.75
2819 2990 8.548877 AGTATTCTGCTCCTCTAATGGTAAAAA 58.451 33.333 0.00 0.00 0.00 1.94
2858 3029 8.325421 TCGTCTGATGAATATAAGACCTAGAC 57.675 38.462 0.00 0.00 40.42 2.59
2871 3042 5.365021 AGACCTAGACTAACTACGGCTTA 57.635 43.478 0.00 0.00 0.00 3.09
2932 3103 6.752351 ACATCTACACTTTACTCTGCGTATTG 59.248 38.462 0.00 0.00 0.00 1.90
2937 3108 5.184479 ACACTTTACTCTGCGTATTGGACTA 59.816 40.000 0.00 0.00 0.00 2.59
2938 3109 5.515626 CACTTTACTCTGCGTATTGGACTAC 59.484 44.000 0.00 0.00 0.00 2.73
2947 3118 4.222145 TGCGTATTGGACTACTTCCTCTTT 59.778 41.667 0.00 0.00 46.10 2.52
2962 3133 4.780815 TCCTCTTTTTCTCTGTTCTTGCA 58.219 39.130 0.00 0.00 0.00 4.08
3050 3221 1.202568 TCTAATGTGCAGGCGGAGATG 60.203 52.381 0.00 0.00 0.00 2.90
3174 3346 2.897350 GACCAGCCTATGTGCGCC 60.897 66.667 4.18 0.00 36.02 6.53
3184 3356 2.327568 CTATGTGCGCCCTTTTGTTTG 58.672 47.619 4.18 0.00 0.00 2.93
3204 3376 8.181487 TGTTTGACTAGTAGCATATTTCGTTC 57.819 34.615 0.00 0.00 0.00 3.95
3264 3436 3.624777 ACCCATTCAGGAAGTATTGCAG 58.375 45.455 0.00 0.00 39.77 4.41
3265 3437 3.010584 ACCCATTCAGGAAGTATTGCAGT 59.989 43.478 0.00 0.00 39.77 4.40
3510 3684 4.526970 GGAACTGGAGAAATGATAAGGCA 58.473 43.478 0.00 0.00 0.00 4.75
3587 3761 5.778161 AACATTTAAGCGGCTTAAAATGC 57.222 34.783 37.11 0.00 45.16 3.56
3642 3816 6.948353 TGCAATGACTTTCGCTCTAATATTC 58.052 36.000 0.00 0.00 0.00 1.75
3745 3919 7.870826 TGGTGTTACTTTGTTCATCTGTATTG 58.129 34.615 0.00 0.00 0.00 1.90
3754 3928 4.877823 TGTTCATCTGTATTGCCAGCTTAG 59.122 41.667 0.00 0.00 32.32 2.18
3843 4017 8.048436 GTGTGTCGTCAACTATATATGTTTTCG 58.952 37.037 0.00 5.71 0.00 3.46
4008 4182 9.594478 TTTTTCTGGGAAAATTTCAGTAACTTC 57.406 29.630 8.09 0.00 0.00 3.01
4043 4217 5.661759 CCCTATAGGACTGGTTAACAACTCT 59.338 44.000 21.07 1.03 38.24 3.24
4044 4218 6.407074 CCCTATAGGACTGGTTAACAACTCTG 60.407 46.154 21.07 0.00 38.24 3.35
4067 4241 2.061028 GTTTTCCAGCTTTCATTGCCG 58.939 47.619 0.00 0.00 0.00 5.69
4176 4350 1.303282 CCTTGGTTAGGGGCTGGTC 59.697 63.158 0.00 0.00 40.67 4.02
4193 4367 2.223443 TCCTGTGCCTGGCTTGCTA 61.223 57.895 21.03 0.00 0.00 3.49
4203 4377 3.489908 GCCTGGCTTGCTATTCTTTAAGC 60.490 47.826 12.43 0.00 43.51 3.09
4209 4383 5.506982 GGCTTGCTATTCTTTAAGCTCATGG 60.507 44.000 0.00 0.00 43.68 3.66
4269 4443 4.756458 AGTGCTCCTGCTGCTCGC 62.756 66.667 0.00 0.00 40.48 5.03
4275 4449 2.818714 CCTGCTGCTCGCTCTTGG 60.819 66.667 0.00 0.00 40.11 3.61
4278 4452 1.360194 CTGCTGCTCGCTCTTGGAAG 61.360 60.000 0.00 0.00 40.11 3.46
4421 4638 5.122396 CCAAGAAAAAGGTTATGGTCTCTCG 59.878 44.000 0.00 0.00 0.00 4.04
4426 4643 0.530870 GGTTATGGTCTCTCGCCTGC 60.531 60.000 0.00 0.00 0.00 4.85
4489 4706 1.876799 TGCATGTTGACCCACTTAACG 59.123 47.619 0.00 0.00 0.00 3.18
4512 4729 3.673809 GTCGTACAAAGCCTTAGACTGTG 59.326 47.826 0.00 0.00 0.00 3.66
4523 4740 4.322349 GCCTTAGACTGTGAGACACTTGAT 60.322 45.833 0.00 0.00 35.11 2.57
4587 4804 1.534163 GGGTGAAACTTCTGCCGTAAC 59.466 52.381 0.00 0.00 36.74 2.50
4641 4869 6.706716 GCTGTTCCTAGTTAAAAGAAGTGACT 59.293 38.462 0.00 0.00 0.00 3.41
4711 4939 3.775202 CCTCGTTACACTTCAGGAGATG 58.225 50.000 0.00 0.00 0.00 2.90
4717 4945 6.590292 TCGTTACACTTCAGGAGATGATTTTC 59.410 38.462 0.00 0.00 37.89 2.29
4854 5083 2.541556 GAAGGCCTGTAAACTAGAGCG 58.458 52.381 5.69 0.00 0.00 5.03
4870 5099 3.067846 GCGCACTACTTTCGACGCC 62.068 63.158 0.30 0.00 40.43 5.68
4997 5226 1.448540 CTGCCGGCGATCTTCACTT 60.449 57.895 23.90 0.00 0.00 3.16
4998 5227 1.424493 CTGCCGGCGATCTTCACTTC 61.424 60.000 23.90 0.00 0.00 3.01
5162 5392 8.349983 ACAACCATGTTAGAAATGAGTTTGTAC 58.650 33.333 0.00 0.00 35.91 2.90
5181 5412 3.914426 ACTCTTCATAAACCGATGCCT 57.086 42.857 0.00 0.00 0.00 4.75
5284 5517 4.569943 TGAGCTACTTTGCAGAGTAAAGG 58.430 43.478 17.00 7.92 38.99 3.11
5290 5523 4.006319 ACTTTGCAGAGTAAAGGAGATGC 58.994 43.478 8.37 0.00 38.99 3.91
5292 5525 0.933796 GCAGAGTAAAGGAGATGCGC 59.066 55.000 0.00 0.00 0.00 6.09
5335 5582 3.681593 TGTATCTGGTAAGCACAAACCC 58.318 45.455 0.00 0.00 34.69 4.11
5343 5590 3.501062 GGTAAGCACAAACCCAACTAGTC 59.499 47.826 0.00 0.00 0.00 2.59
5345 5592 2.851195 AGCACAAACCCAACTAGTCTG 58.149 47.619 0.00 0.00 0.00 3.51
5346 5593 2.172717 AGCACAAACCCAACTAGTCTGT 59.827 45.455 0.00 0.00 0.00 3.41
5347 5594 3.389983 AGCACAAACCCAACTAGTCTGTA 59.610 43.478 0.00 0.00 0.00 2.74
5348 5595 3.497262 GCACAAACCCAACTAGTCTGTAC 59.503 47.826 0.00 0.00 0.00 2.90
5349 5596 3.739300 CACAAACCCAACTAGTCTGTACG 59.261 47.826 0.00 0.00 0.00 3.67
5350 5597 3.385755 ACAAACCCAACTAGTCTGTACGT 59.614 43.478 0.00 0.00 0.00 3.57
5351 5598 4.584325 ACAAACCCAACTAGTCTGTACGTA 59.416 41.667 0.00 0.00 0.00 3.57
5352 5599 4.773323 AACCCAACTAGTCTGTACGTAC 57.227 45.455 18.90 18.90 0.00 3.67
5353 5600 3.084786 ACCCAACTAGTCTGTACGTACC 58.915 50.000 22.43 7.75 0.00 3.34
5354 5601 3.084039 CCCAACTAGTCTGTACGTACCA 58.916 50.000 22.43 9.99 0.00 3.25
5355 5602 3.507233 CCCAACTAGTCTGTACGTACCAA 59.493 47.826 22.43 8.08 0.00 3.67
5356 5603 4.159135 CCCAACTAGTCTGTACGTACCAAT 59.841 45.833 22.43 11.03 0.00 3.16
5357 5604 5.338365 CCAACTAGTCTGTACGTACCAATC 58.662 45.833 22.43 10.46 0.00 2.67
5358 5605 5.125097 CCAACTAGTCTGTACGTACCAATCT 59.875 44.000 22.43 16.23 0.00 2.40
5359 5606 6.349944 CCAACTAGTCTGTACGTACCAATCTT 60.350 42.308 22.43 6.53 0.00 2.40
5360 5607 6.192234 ACTAGTCTGTACGTACCAATCTTG 57.808 41.667 22.43 16.37 0.00 3.02
5410 5657 0.250727 TAGGCTGTGTGTTTCTGGCC 60.251 55.000 0.00 0.00 39.82 5.36
5413 5660 2.203280 TGTGTGTTTCTGGCCCCG 60.203 61.111 0.00 0.00 0.00 5.73
5465 5712 7.596621 CCATGTATGTAAGCTCTGTACTGTATG 59.403 40.741 0.00 0.00 0.00 2.39
5512 5763 2.289820 GGAACCAGAACCAAAACGTCTC 59.710 50.000 0.00 0.00 0.00 3.36
5523 5774 8.246180 AGAACCAAAACGTCTCTATATTACGAA 58.754 33.333 0.00 0.00 39.80 3.85
5525 5776 8.177980 ACCAAAACGTCTCTATATTACGAAAC 57.822 34.615 0.00 0.00 39.80 2.78
5555 5806 8.926710 CCGGATCAATCATGTAAATTACTACTC 58.073 37.037 0.00 0.00 0.00 2.59
5556 5807 8.926710 CGGATCAATCATGTAAATTACTACTCC 58.073 37.037 4.67 0.19 0.00 3.85
5577 5828 8.854614 ACTCCTTTCATTCCATAATATAGTGC 57.145 34.615 0.00 0.00 0.00 4.40
5578 5829 7.604164 ACTCCTTTCATTCCATAATATAGTGCG 59.396 37.037 0.00 0.00 0.00 5.34
5579 5830 6.371548 TCCTTTCATTCCATAATATAGTGCGC 59.628 38.462 0.00 0.00 0.00 6.09
5580 5831 6.149308 CCTTTCATTCCATAATATAGTGCGCA 59.851 38.462 5.66 5.66 0.00 6.09
5581 5832 6.480524 TTCATTCCATAATATAGTGCGCAC 57.519 37.500 32.79 32.79 0.00 5.34
5582 5833 5.546526 TCATTCCATAATATAGTGCGCACA 58.453 37.500 39.21 25.93 0.00 4.57
5591 5842 3.198647 GTGCGCACACGTTTTTCG 58.801 55.556 34.52 0.00 42.83 3.46
5592 5843 1.297012 GTGCGCACACGTTTTTCGA 60.297 52.632 34.52 0.00 42.83 3.71
5593 5844 1.011684 TGCGCACACGTTTTTCGAG 60.012 52.632 5.66 0.00 42.83 4.04
5594 5845 1.274476 GCGCACACGTTTTTCGAGA 59.726 52.632 0.30 0.00 42.83 4.04
5595 5846 0.110823 GCGCACACGTTTTTCGAGAT 60.111 50.000 0.30 0.00 42.83 2.75
5596 5847 1.659211 GCGCACACGTTTTTCGAGATT 60.659 47.619 0.30 0.00 42.83 2.40
5597 5848 2.635444 CGCACACGTTTTTCGAGATTT 58.365 42.857 0.00 0.00 42.86 2.17
5598 5849 3.790058 CGCACACGTTTTTCGAGATTTA 58.210 40.909 0.00 0.00 42.86 1.40
5599 5850 4.205334 CGCACACGTTTTTCGAGATTTAA 58.795 39.130 0.00 0.00 42.86 1.52
5600 5851 4.314708 CGCACACGTTTTTCGAGATTTAAG 59.685 41.667 0.00 0.00 42.86 1.85
5601 5852 4.086664 GCACACGTTTTTCGAGATTTAAGC 59.913 41.667 0.00 0.00 42.86 3.09
5602 5853 5.440685 CACACGTTTTTCGAGATTTAAGCT 58.559 37.500 0.00 0.00 42.86 3.74
5603 5854 5.907391 CACACGTTTTTCGAGATTTAAGCTT 59.093 36.000 3.48 3.48 42.86 3.74
5604 5855 5.907391 ACACGTTTTTCGAGATTTAAGCTTG 59.093 36.000 9.86 0.00 42.86 4.01
5605 5856 6.133392 CACGTTTTTCGAGATTTAAGCTTGA 58.867 36.000 9.86 0.00 42.86 3.02
5606 5857 6.085068 CACGTTTTTCGAGATTTAAGCTTGAC 59.915 38.462 9.86 0.00 42.86 3.18
5607 5858 5.564127 CGTTTTTCGAGATTTAAGCTTGACC 59.436 40.000 9.86 0.00 42.86 4.02
5608 5859 4.921470 TTTCGAGATTTAAGCTTGACCG 57.079 40.909 9.86 4.37 0.00 4.79
5609 5860 3.587797 TCGAGATTTAAGCTTGACCGT 57.412 42.857 9.86 0.00 0.00 4.83
5610 5861 4.707030 TCGAGATTTAAGCTTGACCGTA 57.293 40.909 9.86 0.00 0.00 4.02
5611 5862 5.063180 TCGAGATTTAAGCTTGACCGTAA 57.937 39.130 9.86 0.00 0.00 3.18
5612 5863 5.472148 TCGAGATTTAAGCTTGACCGTAAA 58.528 37.500 9.86 0.25 0.00 2.01
5613 5864 6.103997 TCGAGATTTAAGCTTGACCGTAAAT 58.896 36.000 9.86 5.76 33.91 1.40
5614 5865 6.592607 TCGAGATTTAAGCTTGACCGTAAATT 59.407 34.615 9.86 0.00 32.25 1.82
5615 5866 7.760794 TCGAGATTTAAGCTTGACCGTAAATTA 59.239 33.333 9.86 0.00 32.25 1.40
5616 5867 8.056571 CGAGATTTAAGCTTGACCGTAAATTAG 58.943 37.037 9.86 0.00 32.25 1.73
5617 5868 9.095065 GAGATTTAAGCTTGACCGTAAATTAGA 57.905 33.333 9.86 0.00 32.25 2.10
5618 5869 9.614792 AGATTTAAGCTTGACCGTAAATTAGAT 57.385 29.630 9.86 0.00 32.25 1.98
5619 5870 9.865484 GATTTAAGCTTGACCGTAAATTAGATC 57.135 33.333 9.86 0.00 32.25 2.75
5620 5871 8.780846 TTTAAGCTTGACCGTAAATTAGATCA 57.219 30.769 9.86 0.00 0.00 2.92
5621 5872 8.780846 TTAAGCTTGACCGTAAATTAGATCAA 57.219 30.769 9.86 0.00 0.00 2.57
5622 5873 7.865706 AAGCTTGACCGTAAATTAGATCAAT 57.134 32.000 0.00 0.00 0.00 2.57
5623 5874 8.958119 AAGCTTGACCGTAAATTAGATCAATA 57.042 30.769 0.00 0.00 0.00 1.90
5624 5875 9.561069 AAGCTTGACCGTAAATTAGATCAATAT 57.439 29.630 0.00 0.00 0.00 1.28
5661 5912 9.619316 TTTTGTATCTGAAAAATCATACCGTTG 57.381 29.630 0.00 0.00 0.00 4.10
5662 5913 8.554835 TTGTATCTGAAAAATCATACCGTTGA 57.445 30.769 0.00 0.00 0.00 3.18
5663 5914 8.554835 TGTATCTGAAAAATCATACCGTTGAA 57.445 30.769 0.00 0.00 0.00 2.69
5664 5915 9.004717 TGTATCTGAAAAATCATACCGTTGAAA 57.995 29.630 0.00 0.00 0.00 2.69
5665 5916 9.834628 GTATCTGAAAAATCATACCGTTGAAAA 57.165 29.630 0.00 0.00 0.00 2.29
5666 5917 8.742554 ATCTGAAAAATCATACCGTTGAAAAC 57.257 30.769 0.00 0.00 45.31 2.43
5667 5918 7.936584 TCTGAAAAATCATACCGTTGAAAACT 58.063 30.769 0.00 0.00 46.99 2.66
5668 5919 8.410141 TCTGAAAAATCATACCGTTGAAAACTT 58.590 29.630 0.00 0.00 46.99 2.66
5669 5920 8.568732 TGAAAAATCATACCGTTGAAAACTTC 57.431 30.769 0.00 0.00 46.99 3.01
5670 5921 8.410141 TGAAAAATCATACCGTTGAAAACTTCT 58.590 29.630 0.00 0.00 46.99 2.85
5671 5922 9.244799 GAAAAATCATACCGTTGAAAACTTCTT 57.755 29.630 0.00 0.00 46.99 2.52
5672 5923 9.594478 AAAAATCATACCGTTGAAAACTTCTTT 57.406 25.926 0.00 0.00 46.99 2.52
5673 5924 8.797266 AAATCATACCGTTGAAAACTTCTTTC 57.203 30.769 0.00 0.00 46.99 2.62
5674 5925 6.928979 TCATACCGTTGAAAACTTCTTTCA 57.071 33.333 0.00 0.00 46.99 2.69
5675 5926 7.323049 TCATACCGTTGAAAACTTCTTTCAA 57.677 32.000 8.24 8.24 46.99 2.69
5676 5927 7.763356 TCATACCGTTGAAAACTTCTTTCAAA 58.237 30.769 12.79 0.75 46.99 2.69
5677 5928 8.410141 TCATACCGTTGAAAACTTCTTTCAAAT 58.590 29.630 12.79 6.20 46.99 2.32
5678 5929 9.672086 CATACCGTTGAAAACTTCTTTCAAATA 57.328 29.630 12.79 7.76 46.99 1.40
5679 5930 7.980742 ACCGTTGAAAACTTCTTTCAAATAC 57.019 32.000 12.79 3.28 46.99 1.89
5680 5931 7.540299 ACCGTTGAAAACTTCTTTCAAATACA 58.460 30.769 12.79 0.00 46.99 2.29
5681 5932 8.030106 ACCGTTGAAAACTTCTTTCAAATACAA 58.970 29.630 12.79 0.00 46.99 2.41
5682 5933 8.865001 CCGTTGAAAACTTCTTTCAAATACAAA 58.135 29.630 12.79 0.00 46.99 2.83
5690 5941 9.533253 AACTTCTTTCAAATACAAATTCAGTGG 57.467 29.630 0.00 0.00 0.00 4.00
5691 5942 8.695456 ACTTCTTTCAAATACAAATTCAGTGGT 58.305 29.630 0.00 0.00 0.00 4.16
5704 5955 9.685276 ACAAATTCAGTGGTATCATTTCTATGA 57.315 29.630 0.00 0.00 44.52 2.15
5709 5960 9.904198 TTCAGTGGTATCATTTCTATGATCAAA 57.096 29.630 0.00 0.00 46.19 2.69
5749 6000 7.745022 GCATATGCGCATTACATTATGAAAT 57.255 32.000 30.42 8.19 0.00 2.17
5750 6001 8.839947 GCATATGCGCATTACATTATGAAATA 57.160 30.769 30.42 5.05 0.00 1.40
5751 6002 8.950961 GCATATGCGCATTACATTATGAAATAG 58.049 33.333 30.42 7.20 0.00 1.73
5754 6005 7.728847 TGCGCATTACATTATGAAATAGAGT 57.271 32.000 5.66 0.00 0.00 3.24
5755 6006 7.575365 TGCGCATTACATTATGAAATAGAGTG 58.425 34.615 5.66 0.00 0.00 3.51
5756 6007 6.521133 GCGCATTACATTATGAAATAGAGTGC 59.479 38.462 0.30 0.00 0.00 4.40
5757 6008 7.575365 CGCATTACATTATGAAATAGAGTGCA 58.425 34.615 0.00 0.00 0.00 4.57
5758 6009 7.743400 CGCATTACATTATGAAATAGAGTGCAG 59.257 37.037 0.00 0.00 0.00 4.41
5759 6010 8.777413 GCATTACATTATGAAATAGAGTGCAGA 58.223 33.333 0.00 0.00 0.00 4.26
5764 6015 9.445878 ACATTATGAAATAGAGTGCAGATATGG 57.554 33.333 0.00 0.00 0.00 2.74
5765 6016 9.662947 CATTATGAAATAGAGTGCAGATATGGA 57.337 33.333 0.00 0.00 0.00 3.41
5769 6020 8.985315 TGAAATAGAGTGCAGATATGGATTTT 57.015 30.769 0.00 0.00 0.00 1.82
5770 6021 9.060347 TGAAATAGAGTGCAGATATGGATTTTC 57.940 33.333 0.00 0.00 0.00 2.29
5771 6022 7.664082 AATAGAGTGCAGATATGGATTTTCG 57.336 36.000 0.00 0.00 0.00 3.46
5772 6023 4.384056 AGAGTGCAGATATGGATTTTCGG 58.616 43.478 0.00 0.00 0.00 4.30
5773 6024 4.101585 AGAGTGCAGATATGGATTTTCGGA 59.898 41.667 0.00 0.00 0.00 4.55
5774 6025 4.978099 AGTGCAGATATGGATTTTCGGAT 58.022 39.130 0.00 0.00 0.00 4.18
5775 6026 5.380043 AGTGCAGATATGGATTTTCGGATT 58.620 37.500 0.00 0.00 0.00 3.01
5776 6027 6.533730 AGTGCAGATATGGATTTTCGGATTA 58.466 36.000 0.00 0.00 0.00 1.75
5777 6028 6.428159 AGTGCAGATATGGATTTTCGGATTAC 59.572 38.462 0.00 0.00 0.00 1.89
5778 6029 6.428159 GTGCAGATATGGATTTTCGGATTACT 59.572 38.462 0.00 0.00 0.00 2.24
5779 6030 7.602644 GTGCAGATATGGATTTTCGGATTACTA 59.397 37.037 0.00 0.00 0.00 1.82
5780 6031 7.819415 TGCAGATATGGATTTTCGGATTACTAG 59.181 37.037 0.00 0.00 0.00 2.57
5781 6032 7.819900 GCAGATATGGATTTTCGGATTACTAGT 59.180 37.037 0.00 0.00 0.00 2.57
5792 6043 9.859427 TTTTCGGATTACTAGTATTTTTCTCGA 57.141 29.630 2.79 4.57 0.00 4.04
5793 6044 9.512435 TTTCGGATTACTAGTATTTTTCTCGAG 57.488 33.333 5.93 5.93 0.00 4.04
5794 6045 7.137426 TCGGATTACTAGTATTTTTCTCGAGC 58.863 38.462 7.81 0.00 0.00 5.03
5795 6046 7.013083 TCGGATTACTAGTATTTTTCTCGAGCT 59.987 37.037 7.81 0.00 0.00 4.09
5796 6047 7.648510 CGGATTACTAGTATTTTTCTCGAGCTT 59.351 37.037 7.81 0.00 0.00 3.74
5797 6048 8.970293 GGATTACTAGTATTTTTCTCGAGCTTC 58.030 37.037 7.81 0.00 0.00 3.86
5798 6049 7.966157 TTACTAGTATTTTTCTCGAGCTTCG 57.034 36.000 7.81 0.00 42.10 3.79
5799 6050 5.952033 ACTAGTATTTTTCTCGAGCTTCGT 58.048 37.500 7.81 0.00 41.35 3.85
5800 6051 7.081526 ACTAGTATTTTTCTCGAGCTTCGTA 57.918 36.000 7.81 0.00 41.35 3.43
5801 6052 7.705214 ACTAGTATTTTTCTCGAGCTTCGTAT 58.295 34.615 7.81 0.00 41.35 3.06
5802 6053 6.814076 AGTATTTTTCTCGAGCTTCGTATG 57.186 37.500 7.81 0.00 41.35 2.39
5803 6054 5.749109 AGTATTTTTCTCGAGCTTCGTATGG 59.251 40.000 7.81 0.00 41.35 2.74
5804 6055 2.579207 TTTCTCGAGCTTCGTATGGG 57.421 50.000 7.81 0.00 41.35 4.00
5805 6056 0.102481 TTCTCGAGCTTCGTATGGGC 59.898 55.000 7.81 0.00 41.35 5.36
5806 6057 0.752009 TCTCGAGCTTCGTATGGGCT 60.752 55.000 7.81 3.61 41.35 5.19
5807 6058 0.596083 CTCGAGCTTCGTATGGGCTG 60.596 60.000 0.00 2.68 41.35 4.85
5808 6059 1.035385 TCGAGCTTCGTATGGGCTGA 61.035 55.000 7.80 4.44 41.35 4.26
5809 6060 0.179111 CGAGCTTCGTATGGGCTGAA 60.179 55.000 7.80 0.00 36.37 3.02
5810 6061 1.291132 GAGCTTCGTATGGGCTGAAC 58.709 55.000 7.80 0.00 36.37 3.18
5811 6062 0.460284 AGCTTCGTATGGGCTGAACG 60.460 55.000 3.24 0.00 37.96 3.95
5812 6063 0.739813 GCTTCGTATGGGCTGAACGT 60.740 55.000 6.09 0.00 37.83 3.99
5813 6064 0.999406 CTTCGTATGGGCTGAACGTG 59.001 55.000 0.00 0.00 37.83 4.49
5814 6065 0.390603 TTCGTATGGGCTGAACGTGG 60.391 55.000 0.00 0.00 37.83 4.94
5815 6066 1.079405 CGTATGGGCTGAACGTGGT 60.079 57.895 0.00 0.00 32.16 4.16
5816 6067 0.672401 CGTATGGGCTGAACGTGGTT 60.672 55.000 0.00 0.00 32.16 3.67
5817 6068 1.404449 CGTATGGGCTGAACGTGGTTA 60.404 52.381 0.00 0.00 32.16 2.85
5818 6069 2.277084 GTATGGGCTGAACGTGGTTAG 58.723 52.381 0.00 0.00 0.00 2.34
5819 6070 0.035439 ATGGGCTGAACGTGGTTAGG 60.035 55.000 0.00 0.00 0.00 2.69
5820 6071 2.038837 GGGCTGAACGTGGTTAGGC 61.039 63.158 0.00 0.00 35.24 3.93
5821 6072 2.038837 GGCTGAACGTGGTTAGGCC 61.039 63.158 0.00 0.00 36.62 5.19
5822 6073 2.388232 GCTGAACGTGGTTAGGCCG 61.388 63.158 0.00 0.00 41.21 6.13
5823 6074 1.740296 CTGAACGTGGTTAGGCCGG 60.740 63.158 0.00 0.00 41.21 6.13
5824 6075 2.162338 CTGAACGTGGTTAGGCCGGA 62.162 60.000 5.05 0.00 41.21 5.14
5825 6076 1.447314 GAACGTGGTTAGGCCGGAG 60.447 63.158 5.05 0.00 41.21 4.63
5826 6077 3.600898 AACGTGGTTAGGCCGGAGC 62.601 63.158 5.05 0.00 41.21 4.70
5827 6078 3.771160 CGTGGTTAGGCCGGAGCT 61.771 66.667 5.05 0.00 41.21 4.09
5828 6079 2.420568 CGTGGTTAGGCCGGAGCTA 61.421 63.158 5.05 0.00 41.21 3.32
5829 6080 1.442148 GTGGTTAGGCCGGAGCTAG 59.558 63.158 5.05 0.00 41.21 3.42
5830 6081 1.041447 GTGGTTAGGCCGGAGCTAGA 61.041 60.000 5.05 0.00 41.21 2.43
5831 6082 0.324923 TGGTTAGGCCGGAGCTAGAA 60.325 55.000 5.05 0.00 41.21 2.10
5832 6083 1.049402 GGTTAGGCCGGAGCTAGAAT 58.951 55.000 5.05 0.00 39.73 2.40
5833 6084 1.001068 GGTTAGGCCGGAGCTAGAATC 59.999 57.143 5.05 0.00 39.73 2.52
5834 6085 0.959553 TTAGGCCGGAGCTAGAATCG 59.040 55.000 5.05 0.00 39.73 3.34
5835 6086 0.178998 TAGGCCGGAGCTAGAATCGT 60.179 55.000 5.05 0.00 39.73 3.73
5836 6087 1.007154 GGCCGGAGCTAGAATCGTC 60.007 63.158 5.05 0.00 39.73 4.20
5837 6088 1.007154 GCCGGAGCTAGAATCGTCC 60.007 63.158 5.05 0.00 35.50 4.79
5838 6089 4.924924 CGGAGCTAGAATCGTCCG 57.075 61.111 0.00 0.00 45.48 4.79
5839 6090 1.283181 CGGAGCTAGAATCGTCCGG 59.717 63.158 0.00 0.00 46.68 5.14
5840 6091 1.164662 CGGAGCTAGAATCGTCCGGA 61.165 60.000 0.00 0.00 46.68 5.14
5841 6092 0.594110 GGAGCTAGAATCGTCCGGAG 59.406 60.000 3.06 0.00 0.00 4.63
5842 6093 0.039888 GAGCTAGAATCGTCCGGAGC 60.040 60.000 3.06 1.19 0.00 4.70
5843 6094 0.752009 AGCTAGAATCGTCCGGAGCA 60.752 55.000 3.06 0.00 32.28 4.26
5844 6095 0.315568 GCTAGAATCGTCCGGAGCAT 59.684 55.000 3.06 0.00 0.00 3.79
5845 6096 1.540267 GCTAGAATCGTCCGGAGCATA 59.460 52.381 3.06 0.00 0.00 3.14
5846 6097 2.164624 GCTAGAATCGTCCGGAGCATAT 59.835 50.000 3.06 0.00 0.00 1.78
5847 6098 3.367498 GCTAGAATCGTCCGGAGCATATT 60.367 47.826 3.06 1.89 0.00 1.28
5848 6099 3.305398 AGAATCGTCCGGAGCATATTC 57.695 47.619 3.06 11.76 0.00 1.75
5849 6100 2.028930 AGAATCGTCCGGAGCATATTCC 60.029 50.000 3.06 0.00 0.00 3.01
5850 6101 1.338107 ATCGTCCGGAGCATATTCCA 58.662 50.000 3.06 0.00 37.05 3.53
5851 6102 0.387929 TCGTCCGGAGCATATTCCAC 59.612 55.000 3.06 0.00 37.05 4.02
5852 6103 0.600255 CGTCCGGAGCATATTCCACC 60.600 60.000 3.06 0.00 37.05 4.61
5853 6104 0.759346 GTCCGGAGCATATTCCACCT 59.241 55.000 3.06 0.00 37.05 4.00
5854 6105 0.758734 TCCGGAGCATATTCCACCTG 59.241 55.000 0.00 0.00 37.05 4.00
5855 6106 0.886490 CCGGAGCATATTCCACCTGC 60.886 60.000 0.00 0.00 37.05 4.85
5857 6108 1.475751 CGGAGCATATTCCACCTGCTT 60.476 52.381 0.00 0.00 45.79 3.91
5858 6109 2.225467 GGAGCATATTCCACCTGCTTC 58.775 52.381 0.00 0.00 45.79 3.86
5859 6110 2.225467 GAGCATATTCCACCTGCTTCC 58.775 52.381 0.00 0.00 45.79 3.46
5860 6111 1.849039 AGCATATTCCACCTGCTTCCT 59.151 47.619 0.00 0.00 43.44 3.36
5861 6112 2.243221 AGCATATTCCACCTGCTTCCTT 59.757 45.455 0.00 0.00 43.44 3.36
5862 6113 2.620585 GCATATTCCACCTGCTTCCTTC 59.379 50.000 0.00 0.00 33.15 3.46
5863 6114 3.217626 CATATTCCACCTGCTTCCTTCC 58.782 50.000 0.00 0.00 0.00 3.46
5864 6115 0.035056 ATTCCACCTGCTTCCTTCCG 60.035 55.000 0.00 0.00 0.00 4.30
5865 6116 2.045926 CCACCTGCTTCCTTCCGG 60.046 66.667 0.00 0.00 0.00 5.14
5866 6117 2.750350 CACCTGCTTCCTTCCGGT 59.250 61.111 0.00 0.00 0.00 5.28
5867 6118 1.376037 CACCTGCTTCCTTCCGGTC 60.376 63.158 0.00 0.00 0.00 4.79
5868 6119 2.269241 CCTGCTTCCTTCCGGTCC 59.731 66.667 0.00 0.00 0.00 4.46
5869 6120 2.125512 CTGCTTCCTTCCGGTCCG 60.126 66.667 3.60 3.60 0.00 4.79
5885 6136 4.697756 CGGTCCGGGCAAAGCAGA 62.698 66.667 9.07 0.00 0.00 4.26
5886 6137 2.282180 GGTCCGGGCAAAGCAGAA 60.282 61.111 9.07 0.00 0.00 3.02
5887 6138 2.335712 GGTCCGGGCAAAGCAGAAG 61.336 63.158 9.07 0.00 0.00 2.85
5888 6139 2.672996 TCCGGGCAAAGCAGAAGC 60.673 61.111 0.00 0.00 42.56 3.86
5889 6140 2.985282 CCGGGCAAAGCAGAAGCA 60.985 61.111 0.00 0.00 45.49 3.91
5890 6141 2.256461 CGGGCAAAGCAGAAGCAC 59.744 61.111 0.00 0.00 45.49 4.40
5891 6142 2.653115 GGGCAAAGCAGAAGCACC 59.347 61.111 0.00 0.00 45.49 5.01
5892 6143 2.256461 GGCAAAGCAGAAGCACCG 59.744 61.111 0.00 0.00 45.49 4.94
5893 6144 2.260869 GGCAAAGCAGAAGCACCGA 61.261 57.895 0.00 0.00 45.49 4.69
5894 6145 1.081840 GCAAAGCAGAAGCACCGAC 60.082 57.895 0.00 0.00 45.49 4.79
5895 6146 1.205064 CAAAGCAGAAGCACCGACG 59.795 57.895 0.00 0.00 45.49 5.12
5896 6147 1.961277 AAAGCAGAAGCACCGACGG 60.961 57.895 13.61 13.61 45.49 4.79
5897 6148 3.883744 AAGCAGAAGCACCGACGGG 62.884 63.158 20.00 8.43 45.49 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 2.052690 TCGGCTCTTTCGAGGGAGG 61.053 63.158 15.25 3.85 37.75 4.30
87 88 1.599797 GGAAACGGGTGGTGTGAGG 60.600 63.158 0.00 0.00 0.00 3.86
326 328 0.611896 AGGGATTTTGTTCCGGCTGG 60.612 55.000 4.71 4.71 36.58 4.85
584 606 0.307146 TTTTAAAACGTCGCCCCACG 59.693 50.000 0.00 0.00 45.65 4.94
712 746 0.926293 AGAGAGAGAGGGACAGAGGG 59.074 60.000 0.00 0.00 0.00 4.30
713 747 1.846439 AGAGAGAGAGAGGGACAGAGG 59.154 57.143 0.00 0.00 0.00 3.69
714 748 2.774234 AGAGAGAGAGAGAGGGACAGAG 59.226 54.545 0.00 0.00 0.00 3.35
715 749 2.771943 GAGAGAGAGAGAGAGGGACAGA 59.228 54.545 0.00 0.00 0.00 3.41
716 750 2.774234 AGAGAGAGAGAGAGAGGGACAG 59.226 54.545 0.00 0.00 0.00 3.51
717 751 2.505407 CAGAGAGAGAGAGAGAGGGACA 59.495 54.545 0.00 0.00 0.00 4.02
718 752 2.746472 GCAGAGAGAGAGAGAGAGGGAC 60.746 59.091 0.00 0.00 0.00 4.46
719 753 1.490490 GCAGAGAGAGAGAGAGAGGGA 59.510 57.143 0.00 0.00 0.00 4.20
720 754 1.811558 CGCAGAGAGAGAGAGAGAGGG 60.812 61.905 0.00 0.00 0.00 4.30
721 755 1.586422 CGCAGAGAGAGAGAGAGAGG 58.414 60.000 0.00 0.00 0.00 3.69
808 849 1.523758 CGGGCTGGATTAAGTATGGC 58.476 55.000 0.00 0.00 0.00 4.40
917 969 4.834453 CGAGCTCCAGCCAGCCAG 62.834 72.222 8.47 0.00 43.38 4.85
958 1014 2.644707 GCGAATCGAAAAGCGCCG 60.645 61.111 6.91 0.00 43.33 6.46
976 1041 3.466791 ATCCCGCCAATCAGCCGAG 62.467 63.158 0.00 0.00 0.00 4.63
1031 1112 2.360852 GGTGCTGCTGATGCTGGT 60.361 61.111 0.00 0.00 40.48 4.00
1032 1113 2.360726 TGGTGCTGCTGATGCTGG 60.361 61.111 0.00 0.00 40.48 4.85
1034 1115 2.360852 GGTGGTGCTGCTGATGCT 60.361 61.111 0.00 0.00 40.48 3.79
1038 1119 3.480679 CTGGTGGTGGTGCTGCTGA 62.481 63.158 0.00 0.00 0.00 4.26
1080 1182 1.347907 GAGCGAGTAGACCGACGAC 59.652 63.158 0.00 0.00 0.00 4.34
1083 1185 1.060622 CGTGAGCGAGTAGACCGAC 59.939 63.158 0.00 0.00 41.33 4.79
1563 1677 3.539604 CAAGGACAGAGGATTCACCATC 58.460 50.000 0.00 0.00 42.04 3.51
1626 1740 4.204028 GCACCACCACCACCACCT 62.204 66.667 0.00 0.00 0.00 4.00
1642 1756 3.937062 CGAAACCATAGCGGCCGC 61.937 66.667 42.34 42.34 39.03 6.53
1737 1851 0.035820 AAACATACGGCATCGGTGGT 60.036 50.000 0.00 0.00 41.39 4.16
1800 1914 1.680651 CTGCCTCCTCTCGACCACT 60.681 63.158 0.00 0.00 0.00 4.00
1920 2034 6.072112 AGTAAGCAAACACATCACGATTTT 57.928 33.333 0.00 0.00 0.00 1.82
1947 2061 2.387125 ATTGCGCAACACGTGTCACC 62.387 55.000 27.64 12.01 46.11 4.02
1994 2113 4.280425 TGCTGTTGTGCCATAAATTGAAGA 59.720 37.500 0.00 0.00 0.00 2.87
2002 2121 1.875262 CGCTGCTGTTGTGCCATAA 59.125 52.632 0.00 0.00 0.00 1.90
2082 2244 9.614792 GAAGGCTCTAATCCTTTGTTCTATTTA 57.385 33.333 0.00 0.00 43.54 1.40
2083 2245 8.332487 AGAAGGCTCTAATCCTTTGTTCTATTT 58.668 33.333 0.00 0.00 43.54 1.40
2133 2295 2.288961 AGTATGCCGACGTCGATTTT 57.711 45.000 37.65 20.84 43.02 1.82
2138 2300 4.037021 TGTATTTTAGTATGCCGACGTCG 58.963 43.478 30.33 30.33 39.44 5.12
2144 2306 8.373048 TGTATCCTTTGTATTTTAGTATGCCG 57.627 34.615 0.00 0.00 0.00 5.69
2183 2345 1.772063 AAGACGACGGCTGCAAACAC 61.772 55.000 2.63 0.00 0.00 3.32
2209 2373 1.798223 TGTTCTCGCCAAGATTCAACG 59.202 47.619 0.00 0.00 32.82 4.10
2222 2387 8.883731 ACCTATTGATGTTAGAAATTGTTCTCG 58.116 33.333 0.00 0.00 43.30 4.04
2271 2436 6.652481 AGCCAATATCGATTATCCAAGAGTTG 59.348 38.462 1.71 0.00 0.00 3.16
2301 2466 3.011818 TGTTGCATATCAGAAGGCACAG 58.988 45.455 0.00 0.00 35.74 3.66
2397 2562 4.772624 GTGGCCAGGAGATGTATCATAGTA 59.227 45.833 5.11 0.00 0.00 1.82
2398 2563 3.580458 GTGGCCAGGAGATGTATCATAGT 59.420 47.826 5.11 0.00 0.00 2.12
2399 2564 3.837146 AGTGGCCAGGAGATGTATCATAG 59.163 47.826 5.11 0.00 0.00 2.23
2459 2629 0.940126 AAGGAATGCTAGAATGCGCG 59.060 50.000 0.00 0.00 35.36 6.86
2567 2737 3.643792 GCAGGGTGACTAAGACCTATCAT 59.356 47.826 0.00 0.00 33.58 2.45
2607 2777 8.014517 GTGATTTGTTCTCTCTTTGATTGACTC 58.985 37.037 0.00 0.00 0.00 3.36
2661 2831 0.312102 AAAAAGACCGCTCTTGCTGC 59.688 50.000 0.00 0.00 36.80 5.25
2671 2841 8.184192 AGAGTAAATCATGCAATAAAAAGACCG 58.816 33.333 0.00 0.00 0.00 4.79
2725 2895 6.204108 TGTTAACTGCTACCTTGAGTTTTAGC 59.796 38.462 7.22 0.00 37.95 3.09
2736 2907 7.176165 GGAACCTATTTTTGTTAACTGCTACCT 59.824 37.037 7.22 0.00 0.00 3.08
2776 2947 8.669243 GCAGAATACTTAGCACTGAAGTAATTT 58.331 33.333 0.00 0.00 41.47 1.82
2779 2950 6.936279 AGCAGAATACTTAGCACTGAAGTAA 58.064 36.000 0.00 0.00 41.47 2.24
2819 2990 7.439157 TCATCAGACGAAACAAAAGATCATT 57.561 32.000 0.00 0.00 0.00 2.57
2858 3029 5.010719 TCCATTCCAGATAAGCCGTAGTTAG 59.989 44.000 0.00 0.00 0.00 2.34
2865 3036 3.480470 ACAATCCATTCCAGATAAGCCG 58.520 45.455 0.00 0.00 0.00 5.52
2909 3080 6.096423 TCCAATACGCAGAGTAAAGTGTAGAT 59.904 38.462 0.00 0.00 39.04 1.98
2914 3085 4.495422 AGTCCAATACGCAGAGTAAAGTG 58.505 43.478 0.00 0.00 39.04 3.16
2937 3108 5.298026 GCAAGAACAGAGAAAAAGAGGAAGT 59.702 40.000 0.00 0.00 0.00 3.01
2938 3109 5.297776 TGCAAGAACAGAGAAAAAGAGGAAG 59.702 40.000 0.00 0.00 0.00 3.46
2947 3118 5.357878 ACTGAACAATGCAAGAACAGAGAAA 59.642 36.000 18.44 0.00 0.00 2.52
3050 3221 3.876320 CCTCATTCTTTTGCCTCTCTAGC 59.124 47.826 0.00 0.00 0.00 3.42
3174 3346 9.774742 GAAATATGCTACTAGTCAAACAAAAGG 57.225 33.333 0.00 0.00 0.00 3.11
3184 3356 9.817365 TTATACGAACGAAATATGCTACTAGTC 57.183 33.333 0.00 0.00 0.00 2.59
3204 3376 6.294363 GTCAAGACACGTTTTCCTTTATACG 58.706 40.000 0.00 0.00 39.71 3.06
3264 3436 2.959516 TCATGACATTGACAGGTCGAC 58.040 47.619 7.13 7.13 36.83 4.20
3265 3437 3.676291 TTCATGACATTGACAGGTCGA 57.324 42.857 0.00 0.00 36.83 4.20
3457 3631 4.846779 ACTTTGTCAATACGGCATTGTT 57.153 36.364 10.63 0.00 43.88 2.83
3510 3684 7.670605 ATCAATCAAATCCACATCAATCCTT 57.329 32.000 0.00 0.00 0.00 3.36
3587 3761 8.427774 GCCGATCAATTCAAAGTTTTCTTAAAG 58.572 33.333 0.00 0.00 39.48 1.85
3642 3816 4.335416 ACAACACTTGGGTCAATAGATGG 58.665 43.478 0.00 0.00 34.12 3.51
3745 3919 5.254339 ACATTTTATCTTGCTAAGCTGGC 57.746 39.130 5.14 5.14 0.00 4.85
3754 3928 7.375053 TGTTTACTCCCAACATTTTATCTTGC 58.625 34.615 0.00 0.00 0.00 4.01
3798 3972 7.187824 ACACACACATAATCTCTGGTCTAAT 57.812 36.000 0.00 0.00 0.00 1.73
3843 4017 5.679734 TTGAACAGCTCTTTCAATCAGAC 57.320 39.130 13.70 0.00 37.91 3.51
3987 4161 6.648879 TGGAAGTTACTGAAATTTTCCCAG 57.351 37.500 6.68 4.31 34.87 4.45
4002 4176 8.406643 TCCTATAGGGTATCATGATGGAAGTTA 58.593 37.037 18.72 4.10 36.25 2.24
4003 4177 7.181125 GTCCTATAGGGTATCATGATGGAAGTT 59.819 40.741 18.72 2.31 36.25 2.66
4008 4182 5.365025 CCAGTCCTATAGGGTATCATGATGG 59.635 48.000 18.72 8.17 36.25 3.51
4043 4217 3.795150 GCAATGAAAGCTGGAAAACGACA 60.795 43.478 0.00 0.00 0.00 4.35
4044 4218 2.726241 GCAATGAAAGCTGGAAAACGAC 59.274 45.455 0.00 0.00 0.00 4.34
4067 4241 9.487790 TTTAATTGATGAAAACTTGGACAATCC 57.512 29.630 0.00 0.00 36.96 3.01
4107 4281 1.406614 GCTCTCACAATCTGGACCAGG 60.407 57.143 21.56 8.13 31.51 4.45
4176 4350 0.682209 AATAGCAAGCCAGGCACAGG 60.682 55.000 15.80 0.32 38.40 4.00
4193 4367 7.776969 ACACATATGTCCATGAGCTTAAAGAAT 59.223 33.333 5.07 0.00 31.55 2.40
4203 4377 7.550551 AGAGTTACAAACACATATGTCCATGAG 59.449 37.037 5.07 0.00 38.45 2.90
4209 4383 9.813080 GAAAAGAGAGTTACAAACACATATGTC 57.187 33.333 5.07 0.00 38.45 3.06
4311 4528 6.488006 AGCCCACACATTTCTCATAATATCAC 59.512 38.462 0.00 0.00 0.00 3.06
4387 4604 6.538945 AACCTTTTTCTTGGCTGAGTTTAA 57.461 33.333 0.00 0.00 0.00 1.52
4395 4612 4.740902 AGACCATAACCTTTTTCTTGGCT 58.259 39.130 0.00 0.00 0.00 4.75
4421 4638 1.337823 TGAAGGTAACGAGAAGCAGGC 60.338 52.381 0.00 0.00 46.39 4.85
4426 4643 4.884247 AGGAACTTGAAGGTAACGAGAAG 58.116 43.478 0.00 0.00 36.99 2.85
4489 4706 3.251571 CAGTCTAAGGCTTTGTACGACC 58.748 50.000 4.45 0.00 0.00 4.79
4512 4729 2.303022 TGGAACCTGGATCAAGTGTCTC 59.697 50.000 0.00 0.00 0.00 3.36
4523 4740 5.277250 TGATTGTATAGAGTGGAACCTGGA 58.723 41.667 0.00 0.00 37.80 3.86
4587 4804 9.921637 AACAAAATGTAATTATGTACCACCAAG 57.078 29.630 0.00 0.00 33.67 3.61
4641 4869 1.895798 CTACAGAACAGTGGAGGAGCA 59.104 52.381 0.00 0.00 0.00 4.26
4711 4939 5.963586 CAGAAATTACGTTAGGGCGAAAATC 59.036 40.000 0.00 0.00 35.59 2.17
4717 4945 3.241868 CGTTCAGAAATTACGTTAGGGCG 60.242 47.826 0.00 0.00 37.94 6.13
4782 5011 0.248702 GGCAGATCCTCTTCGACGTC 60.249 60.000 5.18 5.18 0.00 4.34
4854 5083 3.067846 GCGGCGTCGAAAGTAGTGC 62.068 63.158 16.53 0.00 39.00 4.40
4870 5099 3.916172 ACTGTATGTATATAAACCGCGCG 59.084 43.478 25.67 25.67 0.00 6.86
4997 5226 2.896168 CGGACGGCTAAAAACCTATGA 58.104 47.619 0.00 0.00 0.00 2.15
4998 5227 1.329599 GCGGACGGCTAAAAACCTATG 59.670 52.381 0.00 0.00 39.11 2.23
5115 5345 4.038763 TGTGTAATGAGTCCTCGAAACAGT 59.961 41.667 0.96 0.00 0.00 3.55
5162 5392 2.874701 CCAGGCATCGGTTTATGAAGAG 59.125 50.000 0.00 0.00 0.00 2.85
5198 5429 5.011090 TCTACAGATGCGCAAATAGTTCT 57.989 39.130 17.11 8.97 0.00 3.01
5229 5460 1.469703 CTGAAGATGCGCACAATGGAA 59.530 47.619 14.90 0.00 0.00 3.53
5284 5517 1.725706 GCTATGTCTGATGCGCATCTC 59.274 52.381 40.90 31.13 38.60 2.75
5290 5523 1.938577 AGCTTTGCTATGTCTGATGCG 59.061 47.619 0.00 0.00 36.99 4.73
5292 5525 5.123502 ACAAGAAGCTTTGCTATGTCTGATG 59.876 40.000 0.00 0.00 38.25 3.07
5335 5582 6.192234 AGATTGGTACGTACAGACTAGTTG 57.808 41.667 26.02 0.07 0.00 3.16
5420 5667 1.337071 GGCTCCATTGACATGATGCTG 59.663 52.381 0.00 0.00 32.47 4.41
5421 5668 1.064240 TGGCTCCATTGACATGATGCT 60.064 47.619 0.00 0.00 32.47 3.79
5422 5669 1.395635 TGGCTCCATTGACATGATGC 58.604 50.000 0.00 0.00 31.07 3.91
5454 5701 5.277974 GCCATGGTTTATGCATACAGTACAG 60.278 44.000 14.67 0.00 35.37 2.74
5465 5712 2.298411 CCAAGTGCCATGGTTTATGC 57.702 50.000 14.67 0.00 35.37 3.14
5555 5806 6.149308 TGCGCACTATATTATGGAATGAAAGG 59.851 38.462 5.66 0.00 0.00 3.11
5556 5807 7.017645 GTGCGCACTATATTATGGAATGAAAG 58.982 38.462 32.55 0.00 0.00 2.62
5557 5808 6.484977 TGTGCGCACTATATTATGGAATGAAA 59.515 34.615 37.59 11.09 0.00 2.69
5558 5809 5.994668 TGTGCGCACTATATTATGGAATGAA 59.005 36.000 37.59 11.46 0.00 2.57
5559 5810 5.408299 GTGTGCGCACTATATTATGGAATGA 59.592 40.000 37.59 11.85 42.13 2.57
5560 5811 5.621422 GTGTGCGCACTATATTATGGAATG 58.379 41.667 37.59 0.00 42.13 2.67
5561 5812 4.388773 CGTGTGCGCACTATATTATGGAAT 59.611 41.667 37.59 0.00 43.16 3.01
5562 5813 3.738791 CGTGTGCGCACTATATTATGGAA 59.261 43.478 37.59 13.20 43.16 3.53
5563 5814 3.243602 ACGTGTGCGCACTATATTATGGA 60.244 43.478 37.59 13.75 43.16 3.41
5564 5815 3.057019 ACGTGTGCGCACTATATTATGG 58.943 45.455 37.59 18.70 43.16 2.74
5565 5816 4.708868 AACGTGTGCGCACTATATTATG 57.291 40.909 37.59 24.39 43.16 1.90
5566 5817 5.728351 AAAACGTGTGCGCACTATATTAT 57.272 34.783 37.59 17.75 43.16 1.28
5567 5818 5.533533 AAAAACGTGTGCGCACTATATTA 57.466 34.783 37.59 16.84 43.16 0.98
5568 5819 4.399978 GAAAAACGTGTGCGCACTATATT 58.600 39.130 37.59 24.51 43.16 1.28
5569 5820 3.482923 CGAAAAACGTGTGCGCACTATAT 60.483 43.478 37.59 20.54 43.16 0.86
5570 5821 2.159947 CGAAAAACGTGTGCGCACTATA 60.160 45.455 37.59 18.40 43.16 1.31
5571 5822 1.397945 CGAAAAACGTGTGCGCACTAT 60.398 47.619 37.59 21.83 43.16 2.12
5572 5823 0.042880 CGAAAAACGTGTGCGCACTA 60.043 50.000 37.59 22.92 43.16 2.74
5573 5824 1.297304 CGAAAAACGTGTGCGCACT 60.297 52.632 37.59 18.70 43.16 4.40
5574 5825 1.253044 CTCGAAAAACGTGTGCGCAC 61.253 55.000 33.11 33.11 42.83 5.34
5575 5826 1.011684 CTCGAAAAACGTGTGCGCA 60.012 52.632 5.66 5.66 42.83 6.09
5576 5827 0.110823 ATCTCGAAAAACGTGTGCGC 60.111 50.000 0.00 0.00 42.83 6.09
5577 5828 2.294479 AATCTCGAAAAACGTGTGCG 57.706 45.000 0.00 0.00 43.13 5.34
5578 5829 4.086664 GCTTAAATCTCGAAAAACGTGTGC 59.913 41.667 0.00 0.00 43.13 4.57
5579 5830 5.440685 AGCTTAAATCTCGAAAAACGTGTG 58.559 37.500 0.00 0.00 43.13 3.82
5580 5831 5.668558 AGCTTAAATCTCGAAAAACGTGT 57.331 34.783 0.00 0.00 43.13 4.49
5581 5832 6.085068 GTCAAGCTTAAATCTCGAAAAACGTG 59.915 38.462 0.00 0.00 43.13 4.49
5582 5833 6.134061 GTCAAGCTTAAATCTCGAAAAACGT 58.866 36.000 0.00 0.00 43.13 3.99
5583 5834 5.564127 GGTCAAGCTTAAATCTCGAAAAACG 59.436 40.000 0.00 0.00 44.09 3.60
5584 5835 5.564127 CGGTCAAGCTTAAATCTCGAAAAAC 59.436 40.000 0.00 0.00 0.00 2.43
5585 5836 5.237779 ACGGTCAAGCTTAAATCTCGAAAAA 59.762 36.000 0.00 0.00 0.00 1.94
5586 5837 4.753107 ACGGTCAAGCTTAAATCTCGAAAA 59.247 37.500 0.00 0.00 0.00 2.29
5587 5838 4.312443 ACGGTCAAGCTTAAATCTCGAAA 58.688 39.130 0.00 0.00 0.00 3.46
5588 5839 3.921677 ACGGTCAAGCTTAAATCTCGAA 58.078 40.909 0.00 0.00 0.00 3.71
5589 5840 3.587797 ACGGTCAAGCTTAAATCTCGA 57.412 42.857 0.00 0.00 0.00 4.04
5590 5841 5.773239 TTTACGGTCAAGCTTAAATCTCG 57.227 39.130 0.00 0.58 0.00 4.04
5591 5842 9.095065 TCTAATTTACGGTCAAGCTTAAATCTC 57.905 33.333 0.00 0.00 0.00 2.75
5592 5843 9.614792 ATCTAATTTACGGTCAAGCTTAAATCT 57.385 29.630 0.00 0.00 0.00 2.40
5593 5844 9.865484 GATCTAATTTACGGTCAAGCTTAAATC 57.135 33.333 0.00 0.00 0.00 2.17
5594 5845 9.391006 TGATCTAATTTACGGTCAAGCTTAAAT 57.609 29.630 0.00 0.00 0.00 1.40
5595 5846 8.780846 TGATCTAATTTACGGTCAAGCTTAAA 57.219 30.769 0.00 0.00 0.00 1.52
5596 5847 8.780846 TTGATCTAATTTACGGTCAAGCTTAA 57.219 30.769 0.00 0.00 0.00 1.85
5597 5848 8.958119 ATTGATCTAATTTACGGTCAAGCTTA 57.042 30.769 0.00 0.00 0.00 3.09
5598 5849 7.865706 ATTGATCTAATTTACGGTCAAGCTT 57.134 32.000 0.00 0.00 0.00 3.74
5635 5886 9.619316 CAACGGTATGATTTTTCAGATACAAAA 57.381 29.630 0.00 0.00 0.00 2.44
5636 5887 9.004717 TCAACGGTATGATTTTTCAGATACAAA 57.995 29.630 0.00 0.00 0.00 2.83
5637 5888 8.554835 TCAACGGTATGATTTTTCAGATACAA 57.445 30.769 0.00 0.00 0.00 2.41
5638 5889 8.554835 TTCAACGGTATGATTTTTCAGATACA 57.445 30.769 0.00 0.00 0.00 2.29
5639 5890 9.834628 TTTTCAACGGTATGATTTTTCAGATAC 57.165 29.630 0.00 0.00 0.00 2.24
5640 5891 9.834628 GTTTTCAACGGTATGATTTTTCAGATA 57.165 29.630 0.00 0.00 0.00 1.98
5641 5892 8.576442 AGTTTTCAACGGTATGATTTTTCAGAT 58.424 29.630 0.00 0.00 36.23 2.90
5642 5893 7.936584 AGTTTTCAACGGTATGATTTTTCAGA 58.063 30.769 0.00 0.00 36.23 3.27
5643 5894 8.574196 AAGTTTTCAACGGTATGATTTTTCAG 57.426 30.769 0.00 0.00 36.23 3.02
5644 5895 8.410141 AGAAGTTTTCAACGGTATGATTTTTCA 58.590 29.630 0.00 0.00 36.23 2.69
5645 5896 8.797266 AGAAGTTTTCAACGGTATGATTTTTC 57.203 30.769 0.00 0.00 36.23 2.29
5646 5897 9.594478 AAAGAAGTTTTCAACGGTATGATTTTT 57.406 25.926 0.00 0.00 36.23 1.94
5647 5898 9.244799 GAAAGAAGTTTTCAACGGTATGATTTT 57.755 29.630 0.00 0.00 36.23 1.82
5648 5899 8.410141 TGAAAGAAGTTTTCAACGGTATGATTT 58.590 29.630 0.19 0.00 35.69 2.17
5649 5900 7.936584 TGAAAGAAGTTTTCAACGGTATGATT 58.063 30.769 0.19 0.00 35.69 2.57
5650 5901 7.504924 TGAAAGAAGTTTTCAACGGTATGAT 57.495 32.000 0.19 0.00 35.69 2.45
5651 5902 6.928979 TGAAAGAAGTTTTCAACGGTATGA 57.071 33.333 0.19 0.00 35.69 2.15
5652 5903 7.979115 TTTGAAAGAAGTTTTCAACGGTATG 57.021 32.000 12.98 0.00 44.94 2.39
5653 5904 9.673454 GTATTTGAAAGAAGTTTTCAACGGTAT 57.327 29.630 12.98 7.98 44.94 2.73
5654 5905 8.675504 TGTATTTGAAAGAAGTTTTCAACGGTA 58.324 29.630 12.98 6.11 44.94 4.02
5655 5906 7.540299 TGTATTTGAAAGAAGTTTTCAACGGT 58.460 30.769 12.98 6.85 44.94 4.83
5656 5907 7.979115 TGTATTTGAAAGAAGTTTTCAACGG 57.021 32.000 12.98 0.00 44.94 4.44
5664 5915 9.533253 CCACTGAATTTGTATTTGAAAGAAGTT 57.467 29.630 0.00 0.00 0.00 2.66
5665 5916 8.695456 ACCACTGAATTTGTATTTGAAAGAAGT 58.305 29.630 0.00 0.00 0.00 3.01
5678 5929 9.685276 TCATAGAAATGATACCACTGAATTTGT 57.315 29.630 0.00 0.00 37.20 2.83
5713 5964 9.701355 GTAATGCGCATATGCTTTTTAAAATTT 57.299 25.926 25.61 4.66 39.32 1.82
5714 5965 8.877779 TGTAATGCGCATATGCTTTTTAAAATT 58.122 25.926 25.61 5.07 39.32 1.82
5715 5966 8.417780 TGTAATGCGCATATGCTTTTTAAAAT 57.582 26.923 25.61 4.91 39.32 1.82
5716 5967 7.818493 TGTAATGCGCATATGCTTTTTAAAA 57.182 28.000 25.61 0.00 39.32 1.52
5717 5968 8.417780 AATGTAATGCGCATATGCTTTTTAAA 57.582 26.923 25.61 13.87 39.32 1.52
5718 5969 9.689976 ATAATGTAATGCGCATATGCTTTTTAA 57.310 25.926 25.61 7.68 39.32 1.52
5719 5970 9.127006 CATAATGTAATGCGCATATGCTTTTTA 57.873 29.630 25.61 14.68 39.32 1.52
5720 5971 7.866898 TCATAATGTAATGCGCATATGCTTTTT 59.133 29.630 25.61 16.13 39.32 1.94
5721 5972 7.369607 TCATAATGTAATGCGCATATGCTTTT 58.630 30.769 25.61 16.45 39.32 2.27
5722 5973 6.912082 TCATAATGTAATGCGCATATGCTTT 58.088 32.000 25.61 20.22 39.32 3.51
5723 5974 6.499234 TCATAATGTAATGCGCATATGCTT 57.501 33.333 25.61 16.78 39.32 3.91
5724 5975 6.499234 TTCATAATGTAATGCGCATATGCT 57.501 33.333 25.61 10.74 39.32 3.79
5725 5976 7.745022 ATTTCATAATGTAATGCGCATATGC 57.255 32.000 25.61 18.08 37.78 3.14
5728 5979 9.435688 ACTCTATTTCATAATGTAATGCGCATA 57.564 29.630 25.61 8.84 0.00 3.14
5729 5980 8.232513 CACTCTATTTCATAATGTAATGCGCAT 58.767 33.333 19.28 19.28 0.00 4.73
5730 5981 7.575365 CACTCTATTTCATAATGTAATGCGCA 58.425 34.615 14.96 14.96 0.00 6.09
5731 5982 6.521133 GCACTCTATTTCATAATGTAATGCGC 59.479 38.462 0.00 0.00 0.00 6.09
5732 5983 7.575365 TGCACTCTATTTCATAATGTAATGCG 58.425 34.615 0.00 0.00 0.00 4.73
5733 5984 8.777413 TCTGCACTCTATTTCATAATGTAATGC 58.223 33.333 0.00 0.00 0.00 3.56
5738 5989 9.445878 CCATATCTGCACTCTATTTCATAATGT 57.554 33.333 0.00 0.00 0.00 2.71
5739 5990 9.662947 TCCATATCTGCACTCTATTTCATAATG 57.337 33.333 0.00 0.00 0.00 1.90
5743 5994 9.584008 AAAATCCATATCTGCACTCTATTTCAT 57.416 29.630 0.00 0.00 0.00 2.57
5744 5995 8.985315 AAAATCCATATCTGCACTCTATTTCA 57.015 30.769 0.00 0.00 0.00 2.69
5745 5996 8.226448 CGAAAATCCATATCTGCACTCTATTTC 58.774 37.037 0.00 0.00 0.00 2.17
5746 5997 7.173907 CCGAAAATCCATATCTGCACTCTATTT 59.826 37.037 0.00 0.00 0.00 1.40
5747 5998 6.652481 CCGAAAATCCATATCTGCACTCTATT 59.348 38.462 0.00 0.00 0.00 1.73
5748 5999 6.014242 TCCGAAAATCCATATCTGCACTCTAT 60.014 38.462 0.00 0.00 0.00 1.98
5749 6000 5.304357 TCCGAAAATCCATATCTGCACTCTA 59.696 40.000 0.00 0.00 0.00 2.43
5750 6001 4.101585 TCCGAAAATCCATATCTGCACTCT 59.898 41.667 0.00 0.00 0.00 3.24
5751 6002 4.380531 TCCGAAAATCCATATCTGCACTC 58.619 43.478 0.00 0.00 0.00 3.51
5752 6003 4.422073 TCCGAAAATCCATATCTGCACT 57.578 40.909 0.00 0.00 0.00 4.40
5753 6004 5.695851 AATCCGAAAATCCATATCTGCAC 57.304 39.130 0.00 0.00 0.00 4.57
5754 6005 6.533730 AGTAATCCGAAAATCCATATCTGCA 58.466 36.000 0.00 0.00 0.00 4.41
5755 6006 7.819900 ACTAGTAATCCGAAAATCCATATCTGC 59.180 37.037 0.00 0.00 0.00 4.26
5766 6017 9.859427 TCGAGAAAAATACTAGTAATCCGAAAA 57.141 29.630 6.70 0.00 0.00 2.29
5767 6018 9.512435 CTCGAGAAAAATACTAGTAATCCGAAA 57.488 33.333 6.58 0.00 0.00 3.46
5768 6019 7.646922 GCTCGAGAAAAATACTAGTAATCCGAA 59.353 37.037 18.75 0.00 0.00 4.30
5769 6020 7.013083 AGCTCGAGAAAAATACTAGTAATCCGA 59.987 37.037 18.75 11.83 0.00 4.55
5770 6021 7.140048 AGCTCGAGAAAAATACTAGTAATCCG 58.860 38.462 18.75 8.91 0.00 4.18
5771 6022 8.874744 AAGCTCGAGAAAAATACTAGTAATCC 57.125 34.615 18.75 0.00 0.00 3.01
5772 6023 8.683774 CGAAGCTCGAGAAAAATACTAGTAATC 58.316 37.037 18.75 3.80 43.74 1.75
5773 6024 8.189460 ACGAAGCTCGAGAAAAATACTAGTAAT 58.811 33.333 18.75 0.00 43.74 1.89
5774 6025 7.533426 ACGAAGCTCGAGAAAAATACTAGTAA 58.467 34.615 18.75 0.00 43.74 2.24
5775 6026 7.081526 ACGAAGCTCGAGAAAAATACTAGTA 57.918 36.000 18.75 4.77 43.74 1.82
5776 6027 5.952033 ACGAAGCTCGAGAAAAATACTAGT 58.048 37.500 18.75 0.00 43.74 2.57
5777 6028 7.113684 CCATACGAAGCTCGAGAAAAATACTAG 59.886 40.741 18.75 2.65 43.74 2.57
5778 6029 6.916387 CCATACGAAGCTCGAGAAAAATACTA 59.084 38.462 18.75 0.00 43.74 1.82
5779 6030 5.749109 CCATACGAAGCTCGAGAAAAATACT 59.251 40.000 18.75 0.00 43.74 2.12
5780 6031 5.050972 CCCATACGAAGCTCGAGAAAAATAC 60.051 44.000 18.75 0.00 43.74 1.89
5781 6032 5.047847 CCCATACGAAGCTCGAGAAAAATA 58.952 41.667 18.75 2.52 43.74 1.40
5782 6033 3.871594 CCCATACGAAGCTCGAGAAAAAT 59.128 43.478 18.75 0.00 43.74 1.82
5783 6034 3.259064 CCCATACGAAGCTCGAGAAAAA 58.741 45.455 18.75 0.00 43.74 1.94
5784 6035 2.888594 CCCATACGAAGCTCGAGAAAA 58.111 47.619 18.75 0.00 43.74 2.29
5785 6036 1.470979 GCCCATACGAAGCTCGAGAAA 60.471 52.381 18.75 0.00 43.74 2.52
5786 6037 0.102481 GCCCATACGAAGCTCGAGAA 59.898 55.000 18.75 0.00 43.74 2.87
5787 6038 0.752009 AGCCCATACGAAGCTCGAGA 60.752 55.000 18.75 0.00 43.74 4.04
5788 6039 0.596083 CAGCCCATACGAAGCTCGAG 60.596 60.000 8.45 8.45 43.74 4.04
5789 6040 1.035385 TCAGCCCATACGAAGCTCGA 61.035 55.000 11.64 0.00 43.74 4.04
5790 6041 0.179111 TTCAGCCCATACGAAGCTCG 60.179 55.000 0.00 4.36 46.93 5.03
5791 6042 1.291132 GTTCAGCCCATACGAAGCTC 58.709 55.000 0.00 0.00 33.70 4.09
5792 6043 0.460284 CGTTCAGCCCATACGAAGCT 60.460 55.000 0.00 0.00 37.47 3.74
5793 6044 0.739813 ACGTTCAGCCCATACGAAGC 60.740 55.000 0.00 0.00 38.56 3.86
5794 6045 0.999406 CACGTTCAGCCCATACGAAG 59.001 55.000 0.00 0.00 38.56 3.79
5795 6046 0.390603 CCACGTTCAGCCCATACGAA 60.391 55.000 0.00 0.00 38.56 3.85
5796 6047 1.216977 CCACGTTCAGCCCATACGA 59.783 57.895 0.00 0.00 38.56 3.43
5797 6048 0.672401 AACCACGTTCAGCCCATACG 60.672 55.000 0.00 0.00 40.85 3.06
5798 6049 2.277084 CTAACCACGTTCAGCCCATAC 58.723 52.381 0.00 0.00 0.00 2.39
5799 6050 1.208535 CCTAACCACGTTCAGCCCATA 59.791 52.381 0.00 0.00 0.00 2.74
5800 6051 0.035439 CCTAACCACGTTCAGCCCAT 60.035 55.000 0.00 0.00 0.00 4.00
5801 6052 1.373435 CCTAACCACGTTCAGCCCA 59.627 57.895 0.00 0.00 0.00 5.36
5802 6053 2.038837 GCCTAACCACGTTCAGCCC 61.039 63.158 0.00 0.00 0.00 5.19
5803 6054 2.038837 GGCCTAACCACGTTCAGCC 61.039 63.158 0.00 2.95 36.93 4.85
5804 6055 2.388232 CGGCCTAACCACGTTCAGC 61.388 63.158 0.00 0.00 39.03 4.26
5805 6056 1.740296 CCGGCCTAACCACGTTCAG 60.740 63.158 0.00 0.00 39.03 3.02
5806 6057 2.162338 CTCCGGCCTAACCACGTTCA 62.162 60.000 0.00 0.00 39.03 3.18
5807 6058 1.447314 CTCCGGCCTAACCACGTTC 60.447 63.158 0.00 0.00 39.03 3.95
5808 6059 2.660802 CTCCGGCCTAACCACGTT 59.339 61.111 0.00 0.00 39.03 3.99
5809 6060 4.078516 GCTCCGGCCTAACCACGT 62.079 66.667 0.00 0.00 39.03 4.49
5810 6061 2.351336 CTAGCTCCGGCCTAACCACG 62.351 65.000 0.00 0.00 39.03 4.94
5811 6062 1.041447 TCTAGCTCCGGCCTAACCAC 61.041 60.000 0.00 0.00 39.03 4.16
5812 6063 0.324923 TTCTAGCTCCGGCCTAACCA 60.325 55.000 0.00 0.00 39.03 3.67
5813 6064 1.001068 GATTCTAGCTCCGGCCTAACC 59.999 57.143 0.00 0.00 39.73 2.85
5814 6065 1.336056 CGATTCTAGCTCCGGCCTAAC 60.336 57.143 0.00 0.00 39.73 2.34
5815 6066 0.959553 CGATTCTAGCTCCGGCCTAA 59.040 55.000 0.00 0.00 39.73 2.69
5816 6067 0.178998 ACGATTCTAGCTCCGGCCTA 60.179 55.000 0.00 0.00 39.73 3.93
5817 6068 1.455959 ACGATTCTAGCTCCGGCCT 60.456 57.895 0.00 0.00 39.73 5.19
5818 6069 1.007154 GACGATTCTAGCTCCGGCC 60.007 63.158 0.00 0.00 39.73 6.13
5819 6070 1.007154 GGACGATTCTAGCTCCGGC 60.007 63.158 0.00 0.00 39.06 6.13
5820 6071 1.283181 CGGACGATTCTAGCTCCGG 59.717 63.158 0.00 0.00 41.69 5.14
5821 6072 1.164662 TCCGGACGATTCTAGCTCCG 61.165 60.000 0.00 0.00 44.42 4.63
5822 6073 0.594110 CTCCGGACGATTCTAGCTCC 59.406 60.000 0.00 0.00 0.00 4.70
5823 6074 0.039888 GCTCCGGACGATTCTAGCTC 60.040 60.000 0.00 0.00 0.00 4.09
5824 6075 0.752009 TGCTCCGGACGATTCTAGCT 60.752 55.000 0.00 0.00 0.00 3.32
5825 6076 0.315568 ATGCTCCGGACGATTCTAGC 59.684 55.000 0.00 0.00 0.00 3.42
5826 6077 4.416620 GAATATGCTCCGGACGATTCTAG 58.583 47.826 0.00 0.00 0.00 2.43
5827 6078 3.192844 GGAATATGCTCCGGACGATTCTA 59.807 47.826 0.00 0.00 0.00 2.10
5828 6079 2.028930 GGAATATGCTCCGGACGATTCT 60.029 50.000 0.00 0.00 0.00 2.40
5829 6080 2.288825 TGGAATATGCTCCGGACGATTC 60.289 50.000 0.00 10.60 38.44 2.52
5830 6081 1.691976 TGGAATATGCTCCGGACGATT 59.308 47.619 0.00 2.14 38.44 3.34
5831 6082 1.000955 GTGGAATATGCTCCGGACGAT 59.999 52.381 0.00 0.00 38.44 3.73
5832 6083 0.387929 GTGGAATATGCTCCGGACGA 59.612 55.000 0.00 0.00 38.44 4.20
5833 6084 0.600255 GGTGGAATATGCTCCGGACG 60.600 60.000 0.00 0.00 38.44 4.79
5834 6085 0.759346 AGGTGGAATATGCTCCGGAC 59.241 55.000 0.00 0.00 38.44 4.79
5835 6086 0.758734 CAGGTGGAATATGCTCCGGA 59.241 55.000 2.93 2.93 38.44 5.14
5836 6087 0.886490 GCAGGTGGAATATGCTCCGG 60.886 60.000 0.00 0.00 38.44 5.14
5837 6088 2.621763 GCAGGTGGAATATGCTCCG 58.378 57.895 0.00 0.00 38.44 4.63
5841 6092 2.355010 AGGAAGCAGGTGGAATATGC 57.645 50.000 0.00 0.00 40.29 3.14
5842 6093 3.217626 GGAAGGAAGCAGGTGGAATATG 58.782 50.000 0.00 0.00 0.00 1.78
5843 6094 2.158755 CGGAAGGAAGCAGGTGGAATAT 60.159 50.000 0.00 0.00 0.00 1.28
5844 6095 1.209504 CGGAAGGAAGCAGGTGGAATA 59.790 52.381 0.00 0.00 0.00 1.75
5845 6096 0.035056 CGGAAGGAAGCAGGTGGAAT 60.035 55.000 0.00 0.00 0.00 3.01
5846 6097 1.374947 CGGAAGGAAGCAGGTGGAA 59.625 57.895 0.00 0.00 0.00 3.53
5847 6098 3.068881 CGGAAGGAAGCAGGTGGA 58.931 61.111 0.00 0.00 0.00 4.02
5868 6119 4.697756 TCTGCTTTGCCCGGACCG 62.698 66.667 6.99 6.99 0.00 4.79
5869 6120 2.282180 TTCTGCTTTGCCCGGACC 60.282 61.111 0.73 0.00 0.00 4.46
5870 6121 2.982744 GCTTCTGCTTTGCCCGGAC 61.983 63.158 0.73 0.00 36.03 4.79
5871 6122 2.672996 GCTTCTGCTTTGCCCGGA 60.673 61.111 0.73 0.00 36.03 5.14
5872 6123 2.985282 TGCTTCTGCTTTGCCCGG 60.985 61.111 0.00 0.00 40.48 5.73
5873 6124 2.256461 GTGCTTCTGCTTTGCCCG 59.744 61.111 0.00 0.00 40.48 6.13
5874 6125 2.653115 GGTGCTTCTGCTTTGCCC 59.347 61.111 0.00 0.00 40.48 5.36
5875 6126 2.256461 CGGTGCTTCTGCTTTGCC 59.744 61.111 0.00 0.00 40.48 4.52
5876 6127 1.081840 GTCGGTGCTTCTGCTTTGC 60.082 57.895 0.00 0.00 40.48 3.68
5877 6128 1.205064 CGTCGGTGCTTCTGCTTTG 59.795 57.895 0.00 0.00 40.48 2.77
5878 6129 1.961277 CCGTCGGTGCTTCTGCTTT 60.961 57.895 2.08 0.00 40.48 3.51
5879 6130 2.357517 CCGTCGGTGCTTCTGCTT 60.358 61.111 2.08 0.00 40.48 3.91
5880 6131 4.379243 CCCGTCGGTGCTTCTGCT 62.379 66.667 11.06 0.00 40.48 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.