Multiple sequence alignment - TraesCS6A01G333200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G333200 chr6A 100.000 7222 0 0 1 7222 564388855 564396076 0.000000e+00 13337.0
1 TraesCS6A01G333200 chr6A 98.284 816 8 1 1 816 571536154 571536963 0.000000e+00 1424.0
2 TraesCS6A01G333200 chr6A 76.648 531 101 18 6705 7219 591940305 591940828 9.230000e-69 272.0
3 TraesCS6A01G333200 chr6D 92.288 2788 127 18 1121 3867 421559513 421556773 0.000000e+00 3877.0
4 TraesCS6A01G333200 chr6D 93.072 1429 73 13 4229 5647 421556730 421555318 0.000000e+00 2067.0
5 TraesCS6A01G333200 chr6D 87.877 1559 109 34 5712 7219 421555221 421553692 0.000000e+00 1759.0
6 TraesCS6A01G333200 chr6D 91.765 170 10 2 934 1103 421559739 421559574 4.360000e-57 233.0
7 TraesCS6A01G333200 chr6D 100.000 47 0 0 891 937 421559821 421559775 3.590000e-13 87.9
8 TraesCS6A01G333200 chr6B 93.746 1583 62 14 1121 2682 634611706 634613272 0.000000e+00 2340.0
9 TraesCS6A01G333200 chr6B 90.671 1490 83 30 4229 5688 634614627 634616090 0.000000e+00 1930.0
10 TraesCS6A01G333200 chr6B 94.118 1275 62 7 2682 3948 634613361 634614630 0.000000e+00 1927.0
11 TraesCS6A01G333200 chr6B 98.399 812 7 1 1 812 433049904 433049099 0.000000e+00 1423.0
12 TraesCS6A01G333200 chr6B 85.447 1017 82 43 6245 7219 634616738 634617730 0.000000e+00 998.0
13 TraesCS6A01G333200 chr6B 86.486 333 22 4 5946 6260 634616380 634616707 1.930000e-90 344.0
14 TraesCS6A01G333200 chr6B 97.076 171 4 1 934 1103 634611475 634611645 3.300000e-73 287.0
15 TraesCS6A01G333200 chr6B 81.439 264 38 7 5663 5920 634616124 634616382 9.500000e-49 206.0
16 TraesCS6A01G333200 chr6B 96.154 78 3 0 815 892 417243870 417243947 2.110000e-25 128.0
17 TraesCS6A01G333200 chr6B 89.888 89 9 0 815 903 667958703 667958615 1.650000e-21 115.0
18 TraesCS6A01G333200 chr6B 100.000 45 0 0 893 937 634611404 634611448 4.640000e-12 84.2
19 TraesCS6A01G333200 chr2B 98.894 814 5 1 1 814 568459846 568459037 0.000000e+00 1450.0
20 TraesCS6A01G333200 chr2B 75.330 454 97 14 6765 7213 87518577 87519020 3.420000e-48 204.0
21 TraesCS6A01G333200 chr2B 95.000 80 4 0 815 894 141560717 141560638 7.610000e-25 126.0
22 TraesCS6A01G333200 chr3A 98.522 812 10 1 2 811 696145255 696146066 0.000000e+00 1432.0
23 TraesCS6A01G333200 chr3A 98.280 814 9 2 1 811 696131376 696132187 0.000000e+00 1421.0
24 TraesCS6A01G333200 chr3A 98.701 77 1 0 815 891 359354612 359354536 3.510000e-28 137.0
25 TraesCS6A01G333200 chr5B 98.403 814 7 1 1 814 461406561 461405754 0.000000e+00 1426.0
26 TraesCS6A01G333200 chr4B 98.280 814 8 1 1 814 99013153 99013960 0.000000e+00 1421.0
27 TraesCS6A01G333200 chr7A 98.157 814 9 1 1 814 579163780 579162973 0.000000e+00 1415.0
28 TraesCS6A01G333200 chr7A 96.853 286 9 0 3944 4229 48947113 48947398 5.070000e-131 479.0
29 TraesCS6A01G333200 chr7A 94.983 299 14 1 3943 4241 170685915 170685618 1.100000e-127 468.0
30 TraesCS6A01G333200 chr5A 98.157 814 9 1 1 814 12035259 12034452 0.000000e+00 1415.0
31 TraesCS6A01G333200 chr5A 96.886 289 9 0 3941 4229 383894830 383894542 1.090000e-132 484.0
32 TraesCS6A01G333200 chr5A 97.203 286 8 0 3947 4232 637058399 637058114 1.090000e-132 484.0
33 TraesCS6A01G333200 chr1A 96.939 294 8 1 3947 4240 41902260 41902552 6.510000e-135 492.0
34 TraesCS6A01G333200 chr1A 95.890 292 10 2 3947 4238 491146089 491146378 8.480000e-129 472.0
35 TraesCS6A01G333200 chr2A 96.875 288 8 1 3944 4231 162455616 162455902 1.410000e-131 481.0
36 TraesCS6A01G333200 chr2A 75.111 450 98 13 6757 7199 631205729 631206171 1.590000e-46 198.0
37 TraesCS6A01G333200 chr2A 96.203 79 3 0 815 893 81098077 81097999 5.880000e-26 130.0
38 TraesCS6A01G333200 chr3B 96.853 286 9 0 3947 4232 17350571 17350286 5.070000e-131 479.0
39 TraesCS6A01G333200 chr3B 98.684 76 1 0 815 890 340802323 340802398 1.260000e-27 135.0
40 TraesCS6A01G333200 chr3B 96.296 81 2 1 815 894 369097468 369097388 1.630000e-26 132.0
41 TraesCS6A01G333200 chr4A 95.918 294 10 2 3941 4233 721419433 721419141 6.560000e-130 475.0
42 TraesCS6A01G333200 chr7D 76.063 447 99 8 6757 7199 548054443 548054885 7.290000e-55 226.0
43 TraesCS6A01G333200 chr7D 75.839 447 104 3 6764 7208 603905107 603904663 2.620000e-54 224.0
44 TraesCS6A01G333200 chr7D 76.098 410 86 12 6816 7219 594146225 594146628 3.420000e-48 204.0
45 TraesCS6A01G333200 chr7D 84.043 94 14 1 815 908 184483118 184483210 9.980000e-14 89.8
46 TraesCS6A01G333200 chrUn 75.000 468 105 11 6757 7218 65421671 65421210 9.500000e-49 206.0
47 TraesCS6A01G333200 chr7B 92.473 93 7 0 815 907 711355479 711355571 4.550000e-27 134.0
48 TraesCS6A01G333200 chr7B 95.122 82 3 1 815 896 664034293 664034373 2.110000e-25 128.0
49 TraesCS6A01G333200 chr1B 95.122 82 3 1 815 895 222296575 222296494 2.110000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G333200 chr6A 564388855 564396076 7221 False 13337.000 13337 100.000000 1 7222 1 chr6A.!!$F1 7221
1 TraesCS6A01G333200 chr6A 571536154 571536963 809 False 1424.000 1424 98.284000 1 816 1 chr6A.!!$F2 815
2 TraesCS6A01G333200 chr6A 591940305 591940828 523 False 272.000 272 76.648000 6705 7219 1 chr6A.!!$F3 514
3 TraesCS6A01G333200 chr6D 421553692 421559821 6129 True 1604.780 3877 93.000400 891 7219 5 chr6D.!!$R1 6328
4 TraesCS6A01G333200 chr6B 433049099 433049904 805 True 1423.000 1423 98.399000 1 812 1 chr6B.!!$R1 811
5 TraesCS6A01G333200 chr6B 634611404 634617730 6326 False 1014.525 2340 91.122875 893 7219 8 chr6B.!!$F2 6326
6 TraesCS6A01G333200 chr2B 568459037 568459846 809 True 1450.000 1450 98.894000 1 814 1 chr2B.!!$R2 813
7 TraesCS6A01G333200 chr3A 696145255 696146066 811 False 1432.000 1432 98.522000 2 811 1 chr3A.!!$F2 809
8 TraesCS6A01G333200 chr3A 696131376 696132187 811 False 1421.000 1421 98.280000 1 811 1 chr3A.!!$F1 810
9 TraesCS6A01G333200 chr5B 461405754 461406561 807 True 1426.000 1426 98.403000 1 814 1 chr5B.!!$R1 813
10 TraesCS6A01G333200 chr4B 99013153 99013960 807 False 1421.000 1421 98.280000 1 814 1 chr4B.!!$F1 813
11 TraesCS6A01G333200 chr7A 579162973 579163780 807 True 1415.000 1415 98.157000 1 814 1 chr7A.!!$R2 813
12 TraesCS6A01G333200 chr5A 12034452 12035259 807 True 1415.000 1415 98.157000 1 814 1 chr5A.!!$R1 813

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
852 866 0.386113 CTAGTCTAGAGTTGCCGCCC 59.614 60.000 5.16 0.0 0.00 6.13 F
853 867 1.041447 TAGTCTAGAGTTGCCGCCCC 61.041 60.000 5.16 0.0 0.00 5.80 F
2233 2365 1.146263 GCCGTCGAAATGGGAGGAT 59.854 57.895 0.00 0.0 31.56 3.24 F
2748 2969 0.318614 CAACCCCACAATTGTCGTGC 60.319 55.000 8.48 0.0 32.85 5.34 F
3087 3310 0.745845 CCCTGCGATTTCCAGTCCAG 60.746 60.000 0.00 0.0 0.00 3.86 F
3962 4206 0.260230 TTCAGGCCCTGTTTGGTTCA 59.740 50.000 11.27 0.0 32.61 3.18 F
5915 6316 0.250038 AGAGCTTTGCGCAGTCTGAA 60.250 50.000 11.31 0.0 42.61 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2233 2365 0.614697 TCAGGATCCACTTCTCGGCA 60.615 55.0 15.82 0.00 0.00 5.69 R
2572 2704 0.943673 TTTCTGTCCACGCATGTGTG 59.056 50.0 28.60 28.60 44.92 3.82 R
3596 3838 0.254178 AGCTTGGCACTGTAGGATGG 59.746 55.0 0.00 0.00 0.00 3.51 R
3944 4188 0.482446 ATGAACCAAACAGGGCCTGA 59.518 50.0 38.99 15.25 43.89 3.86 R
4216 4460 0.839946 AGCACTGAGAGGGTGTTTGT 59.160 50.0 0.00 0.00 37.07 2.83 R
5919 6320 0.182537 CACCCCAGTTGAGTGTTCCA 59.817 55.0 0.00 0.00 0.00 3.53 R
6782 7348 0.168788 TCGTCGCTAGGTGGTTTACG 59.831 55.0 0.00 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 2.352225 GCTTCTCTCTTTGACTCAGCGA 60.352 50.000 0.00 0.00 0.00 4.93
308 309 5.523916 CCTCTACACATCAAAAACTATCCCG 59.476 44.000 0.00 0.00 0.00 5.14
442 446 5.241403 ACAGAGAAGAACTGAGAGAGAGA 57.759 43.478 0.00 0.00 38.55 3.10
443 447 5.248640 ACAGAGAAGAACTGAGAGAGAGAG 58.751 45.833 0.00 0.00 38.55 3.20
444 448 5.013079 ACAGAGAAGAACTGAGAGAGAGAGA 59.987 44.000 0.00 0.00 38.55 3.10
445 449 5.583854 CAGAGAAGAACTGAGAGAGAGAGAG 59.416 48.000 0.00 0.00 37.54 3.20
603 617 4.785453 CCCAGTTCGGCCTCCTGC 62.785 72.222 0.00 0.00 40.16 4.85
831 845 5.721876 AAATCGAGTCTAGACTAGTCACG 57.278 43.478 25.23 21.92 42.66 4.35
832 846 4.652421 ATCGAGTCTAGACTAGTCACGA 57.348 45.455 26.26 26.26 42.66 4.35
833 847 3.768406 TCGAGTCTAGACTAGTCACGAC 58.232 50.000 25.23 24.93 42.66 4.34
834 848 3.443329 TCGAGTCTAGACTAGTCACGACT 59.557 47.826 30.88 30.88 42.66 4.18
835 849 4.637977 TCGAGTCTAGACTAGTCACGACTA 59.362 45.833 30.67 20.83 42.66 2.59
847 861 3.685756 AGTCACGACTAGTCTAGAGTTGC 59.314 47.826 20.34 6.51 40.43 4.17
848 862 3.008330 TCACGACTAGTCTAGAGTTGCC 58.992 50.000 20.34 0.00 32.31 4.52
849 863 2.008329 ACGACTAGTCTAGAGTTGCCG 58.992 52.381 20.34 14.18 32.31 5.69
850 864 1.268133 CGACTAGTCTAGAGTTGCCGC 60.268 57.143 20.34 0.00 0.00 6.53
851 865 1.065851 GACTAGTCTAGAGTTGCCGCC 59.934 57.143 15.91 0.00 0.00 6.13
852 866 0.386113 CTAGTCTAGAGTTGCCGCCC 59.614 60.000 5.16 0.00 0.00 6.13
853 867 1.041447 TAGTCTAGAGTTGCCGCCCC 61.041 60.000 5.16 0.00 0.00 5.80
854 868 2.038975 TCTAGAGTTGCCGCCCCT 59.961 61.111 0.00 0.00 0.00 4.79
855 869 2.187946 CTAGAGTTGCCGCCCCTG 59.812 66.667 0.00 0.00 0.00 4.45
856 870 2.284331 TAGAGTTGCCGCCCCTGA 60.284 61.111 0.00 0.00 0.00 3.86
857 871 2.303549 CTAGAGTTGCCGCCCCTGAG 62.304 65.000 0.00 0.00 0.00 3.35
866 880 4.500116 GCCCCTGAGCGACTCGTC 62.500 72.222 0.00 0.00 32.35 4.20
889 903 5.023551 GACTCATCGACTCAAAAACCTTG 57.976 43.478 0.00 0.00 0.00 3.61
1155 1253 1.626654 CGTCCACATTGCCGTCTCAC 61.627 60.000 0.00 0.00 0.00 3.51
1184 1282 2.567985 CCCGCCGGATTATTTTACTGT 58.432 47.619 5.05 0.00 0.00 3.55
1186 1284 3.002965 CCCGCCGGATTATTTTACTGTTC 59.997 47.826 5.05 0.00 0.00 3.18
1209 1307 3.993081 CGAGTCAATAGATCCAATCCAGC 59.007 47.826 0.00 0.00 0.00 4.85
1314 1416 2.311124 AGAAATTCGAACGGGGCTAG 57.689 50.000 0.00 0.00 0.00 3.42
1767 1899 4.194720 CGGCGACTCCTTCTCCCG 62.195 72.222 0.00 0.00 32.58 5.14
1811 1943 3.777925 CACGCGCCACAGCTACAC 61.778 66.667 5.73 0.00 36.60 2.90
1822 1954 2.076863 ACAGCTACACGATGCCTTTTC 58.923 47.619 0.00 0.00 30.42 2.29
1848 1980 2.999355 GAGTGAAGTGGAGTGATTGCTC 59.001 50.000 0.00 0.00 34.89 4.26
1860 1992 2.791004 GTGATTGCTCACTGTTTGTTGC 59.209 45.455 0.00 0.00 46.84 4.17
2233 2365 1.146263 GCCGTCGAAATGGGAGGAT 59.854 57.895 0.00 0.00 31.56 3.24
2290 2422 3.521529 GATGGGGAGGATGTCGGCG 62.522 68.421 0.00 0.00 0.00 6.46
2491 2623 1.571460 CAACGGTGACTTCAGCAGC 59.429 57.895 0.00 0.00 44.00 5.25
2503 2635 4.093291 AGCAGCGGAAGAGCCAGG 62.093 66.667 0.00 0.00 38.01 4.45
2509 2641 2.286523 CGGAAGAGCCAGGAGTGGT 61.287 63.158 0.00 0.00 46.96 4.16
2572 2704 5.046529 CCGTATATATGGAGATCAGCAAGC 58.953 45.833 15.00 0.00 34.17 4.01
2715 2936 7.990886 TCAATACCTTGAAGTTGAACAGTTAGT 59.009 33.333 0.00 0.00 38.43 2.24
2726 2947 9.694137 AAGTTGAACAGTTAGTAGATTCTACAC 57.306 33.333 22.54 14.17 30.58 2.90
2748 2969 0.318614 CAACCCCACAATTGTCGTGC 60.319 55.000 8.48 0.00 32.85 5.34
2925 3148 5.294306 ACAACTCTATCGTGTGCCATTTATG 59.706 40.000 0.00 0.00 0.00 1.90
3049 3272 5.037385 CCTGTACACAGATGATGTCTTACG 58.963 45.833 10.96 0.00 46.59 3.18
3068 3291 1.527433 GAGGCCAACAAGGAGCAACC 61.527 60.000 5.01 0.00 41.22 3.77
3087 3310 0.745845 CCCTGCGATTTCCAGTCCAG 60.746 60.000 0.00 0.00 0.00 3.86
3185 3408 3.965539 CTCCAGCTTGCCGTCAGGG 62.966 68.421 0.00 0.00 38.20 4.45
3189 3412 1.689233 AGCTTGCCGTCAGGGGATA 60.689 57.895 0.00 0.00 35.29 2.59
3574 3816 5.771666 AGATGACTTGCTTTTCTGGAAATGA 59.228 36.000 11.44 0.00 0.00 2.57
3578 3820 5.544650 ACTTGCTTTTCTGGAAATGATTGG 58.455 37.500 11.44 3.38 0.00 3.16
3596 3838 6.397272 TGATTGGTGTGATTAATGAAAAGGC 58.603 36.000 0.00 0.00 0.00 4.35
3618 3860 3.609853 CATCCTACAGTGCCAAGCTAAA 58.390 45.455 0.00 0.00 0.00 1.85
3667 3909 2.054799 TGCATATGGGTAGGAAGGGTC 58.945 52.381 4.56 0.00 0.00 4.46
3693 3935 2.124903 CTAAGTATGGTAGCCGTTGCG 58.875 52.381 0.00 0.00 44.33 4.85
3718 3960 7.220683 CGAACCGAGTATAGATCTAGCTACTAC 59.779 44.444 13.60 8.57 0.00 2.73
3763 4005 4.225042 TGTGACATGTTCTTAGTGGGCTAT 59.775 41.667 0.00 0.00 0.00 2.97
3825 4067 5.111293 ACTTCCACAATTTGAAGTTGCAAG 58.889 37.500 0.00 3.75 46.77 4.01
3916 4160 4.098501 ACCCAGTTTCTTTCTTCAGCAAAG 59.901 41.667 0.00 0.00 36.22 2.77
3950 4194 6.930731 TCAGGTTACAAATTTAATTCAGGCC 58.069 36.000 0.00 0.00 0.00 5.19
3951 4195 6.071051 TCAGGTTACAAATTTAATTCAGGCCC 60.071 38.462 0.00 0.00 0.00 5.80
3952 4196 6.022958 AGGTTACAAATTTAATTCAGGCCCT 58.977 36.000 0.00 0.00 0.00 5.19
3953 4197 6.070824 AGGTTACAAATTTAATTCAGGCCCTG 60.071 38.462 3.69 3.69 0.00 4.45
3954 4198 6.295632 GGTTACAAATTTAATTCAGGCCCTGT 60.296 38.462 11.27 0.00 32.61 4.00
3955 4199 5.823861 ACAAATTTAATTCAGGCCCTGTT 57.176 34.783 11.27 0.82 32.61 3.16
3956 4200 6.186420 ACAAATTTAATTCAGGCCCTGTTT 57.814 33.333 11.27 8.62 32.61 2.83
3957 4201 5.997129 ACAAATTTAATTCAGGCCCTGTTTG 59.003 36.000 11.27 13.82 32.61 2.93
3958 4202 4.824479 ATTTAATTCAGGCCCTGTTTGG 57.176 40.909 11.27 0.00 32.61 3.28
3959 4203 2.990740 TAATTCAGGCCCTGTTTGGT 57.009 45.000 11.27 0.00 32.61 3.67
3960 4204 2.101640 AATTCAGGCCCTGTTTGGTT 57.898 45.000 11.27 0.00 32.61 3.67
3961 4205 1.632589 ATTCAGGCCCTGTTTGGTTC 58.367 50.000 11.27 0.00 32.61 3.62
3962 4206 0.260230 TTCAGGCCCTGTTTGGTTCA 59.740 50.000 11.27 0.00 32.61 3.18
3963 4207 0.482446 TCAGGCCCTGTTTGGTTCAT 59.518 50.000 11.27 0.00 32.61 2.57
3964 4208 1.707989 TCAGGCCCTGTTTGGTTCATA 59.292 47.619 11.27 0.00 32.61 2.15
3965 4209 2.109128 TCAGGCCCTGTTTGGTTCATAA 59.891 45.455 11.27 0.00 32.61 1.90
3966 4210 2.493278 CAGGCCCTGTTTGGTTCATAAG 59.507 50.000 1.39 0.00 0.00 1.73
3967 4211 2.110011 AGGCCCTGTTTGGTTCATAAGT 59.890 45.455 0.00 0.00 0.00 2.24
3968 4212 2.492088 GGCCCTGTTTGGTTCATAAGTC 59.508 50.000 0.00 0.00 0.00 3.01
3969 4213 2.492088 GCCCTGTTTGGTTCATAAGTCC 59.508 50.000 0.00 0.00 0.00 3.85
3970 4214 3.814316 GCCCTGTTTGGTTCATAAGTCCT 60.814 47.826 0.00 0.00 0.00 3.85
3971 4215 4.566907 GCCCTGTTTGGTTCATAAGTCCTA 60.567 45.833 0.00 0.00 0.00 2.94
3972 4216 5.186198 CCCTGTTTGGTTCATAAGTCCTAG 58.814 45.833 0.00 0.00 0.00 3.02
3973 4217 5.186198 CCTGTTTGGTTCATAAGTCCTAGG 58.814 45.833 0.82 0.82 0.00 3.02
3974 4218 5.045869 CCTGTTTGGTTCATAAGTCCTAGGA 60.046 44.000 7.62 7.62 0.00 2.94
3975 4219 5.801380 TGTTTGGTTCATAAGTCCTAGGAC 58.199 41.667 31.29 31.29 44.86 3.85
4003 4247 6.956102 TTTAGTCCCAACTTATAAGTCCCA 57.044 37.500 18.28 1.06 38.57 4.37
4004 4248 6.956102 TTAGTCCCAACTTATAAGTCCCAA 57.044 37.500 18.28 3.05 38.57 4.12
4005 4249 5.437191 AGTCCCAACTTATAAGTCCCAAG 57.563 43.478 18.28 6.66 38.57 3.61
4006 4250 4.850386 AGTCCCAACTTATAAGTCCCAAGT 59.150 41.667 18.28 5.74 38.57 3.16
4007 4251 5.045797 AGTCCCAACTTATAAGTCCCAAGTC 60.046 44.000 18.28 6.78 38.57 3.01
4008 4252 4.226620 TCCCAACTTATAAGTCCCAAGTCC 59.773 45.833 18.28 0.00 38.57 3.85
4009 4253 4.524053 CCAACTTATAAGTCCCAAGTCCC 58.476 47.826 18.28 0.00 38.57 4.46
4010 4254 4.227527 CCAACTTATAAGTCCCAAGTCCCT 59.772 45.833 18.28 0.00 38.57 4.20
4011 4255 5.427481 CCAACTTATAAGTCCCAAGTCCCTA 59.573 44.000 18.28 0.00 38.57 3.53
4012 4256 6.069847 CCAACTTATAAGTCCCAAGTCCCTAA 60.070 42.308 18.28 0.00 38.57 2.69
4013 4257 7.399634 CAACTTATAAGTCCCAAGTCCCTAAA 58.600 38.462 18.28 0.00 38.57 1.85
4014 4258 7.578458 ACTTATAAGTCCCAAGTCCCTAAAA 57.422 36.000 12.50 0.00 32.86 1.52
4015 4259 7.992295 ACTTATAAGTCCCAAGTCCCTAAAAA 58.008 34.615 12.50 0.00 32.86 1.94
4016 4260 8.107729 ACTTATAAGTCCCAAGTCCCTAAAAAG 58.892 37.037 12.50 0.00 32.86 2.27
4017 4261 4.808767 AAGTCCCAAGTCCCTAAAAAGT 57.191 40.909 0.00 0.00 0.00 2.66
4018 4262 4.368565 AGTCCCAAGTCCCTAAAAAGTC 57.631 45.455 0.00 0.00 0.00 3.01
4019 4263 3.074094 AGTCCCAAGTCCCTAAAAAGTCC 59.926 47.826 0.00 0.00 0.00 3.85
4020 4264 2.377531 TCCCAAGTCCCTAAAAAGTCCC 59.622 50.000 0.00 0.00 0.00 4.46
4021 4265 2.378886 CCCAAGTCCCTAAAAAGTCCCT 59.621 50.000 0.00 0.00 0.00 4.20
4022 4266 3.590182 CCCAAGTCCCTAAAAAGTCCCTA 59.410 47.826 0.00 0.00 0.00 3.53
4023 4267 4.229812 CCCAAGTCCCTAAAAAGTCCCTAT 59.770 45.833 0.00 0.00 0.00 2.57
4024 4268 5.437946 CCAAGTCCCTAAAAAGTCCCTATC 58.562 45.833 0.00 0.00 0.00 2.08
4025 4269 5.191921 CCAAGTCCCTAAAAAGTCCCTATCT 59.808 44.000 0.00 0.00 0.00 1.98
4026 4270 5.959583 AGTCCCTAAAAAGTCCCTATCTG 57.040 43.478 0.00 0.00 0.00 2.90
4027 4271 5.351405 AGTCCCTAAAAAGTCCCTATCTGT 58.649 41.667 0.00 0.00 0.00 3.41
4028 4272 5.791141 AGTCCCTAAAAAGTCCCTATCTGTT 59.209 40.000 0.00 0.00 0.00 3.16
4029 4273 6.274908 AGTCCCTAAAAAGTCCCTATCTGTTT 59.725 38.462 0.00 0.00 0.00 2.83
4030 4274 6.374613 GTCCCTAAAAAGTCCCTATCTGTTTG 59.625 42.308 0.00 0.00 0.00 2.93
4031 4275 5.652452 CCCTAAAAAGTCCCTATCTGTTTGG 59.348 44.000 0.00 0.00 0.00 3.28
4032 4276 6.246163 CCTAAAAAGTCCCTATCTGTTTGGT 58.754 40.000 0.00 0.00 0.00 3.67
4033 4277 6.719829 CCTAAAAAGTCCCTATCTGTTTGGTT 59.280 38.462 0.00 0.00 0.00 3.67
4034 4278 6.650427 AAAAAGTCCCTATCTGTTTGGTTC 57.350 37.500 0.00 0.00 0.00 3.62
4035 4279 4.302559 AAGTCCCTATCTGTTTGGTTCC 57.697 45.455 0.00 0.00 0.00 3.62
4036 4280 3.532102 AGTCCCTATCTGTTTGGTTCCT 58.468 45.455 0.00 0.00 0.00 3.36
4037 4281 3.264450 AGTCCCTATCTGTTTGGTTCCTG 59.736 47.826 0.00 0.00 0.00 3.86
4038 4282 2.576191 TCCCTATCTGTTTGGTTCCTGG 59.424 50.000 0.00 0.00 0.00 4.45
4039 4283 2.357154 CCCTATCTGTTTGGTTCCTGGG 60.357 54.545 0.00 0.00 0.00 4.45
4040 4284 2.576191 CCTATCTGTTTGGTTCCTGGGA 59.424 50.000 0.00 0.00 0.00 4.37
4041 4285 2.586648 ATCTGTTTGGTTCCTGGGAC 57.413 50.000 0.00 0.00 0.00 4.46
4042 4286 1.518367 TCTGTTTGGTTCCTGGGACT 58.482 50.000 4.84 0.00 0.00 3.85
4043 4287 1.850345 TCTGTTTGGTTCCTGGGACTT 59.150 47.619 4.84 0.00 0.00 3.01
4044 4288 3.050089 TCTGTTTGGTTCCTGGGACTTA 58.950 45.455 4.84 0.00 0.00 2.24
4045 4289 3.655777 TCTGTTTGGTTCCTGGGACTTAT 59.344 43.478 4.84 0.00 0.00 1.73
4046 4290 4.847512 TCTGTTTGGTTCCTGGGACTTATA 59.152 41.667 4.84 0.00 0.00 0.98
4047 4291 5.311121 TCTGTTTGGTTCCTGGGACTTATAA 59.689 40.000 4.84 0.00 0.00 0.98
4048 4292 5.566469 TGTTTGGTTCCTGGGACTTATAAG 58.434 41.667 11.05 11.05 0.00 1.73
4049 4293 5.073965 TGTTTGGTTCCTGGGACTTATAAGT 59.926 40.000 18.05 18.05 43.16 2.24
4093 4337 9.503369 ACAACTATAAGTTCCTATAAGTCCCTT 57.497 33.333 0.00 0.00 36.03 3.95
4094 4338 9.984190 CAACTATAAGTTCCTATAAGTCCCTTC 57.016 37.037 0.00 0.00 36.03 3.46
4095 4339 9.954992 AACTATAAGTTCCTATAAGTCCCTTCT 57.045 33.333 0.00 0.00 31.77 2.85
4096 4340 9.954992 ACTATAAGTTCCTATAAGTCCCTTCTT 57.045 33.333 0.00 0.00 0.00 2.52
4098 4342 8.855804 ATAAGTTCCTATAAGTCCCTTCTTGA 57.144 34.615 0.00 0.00 0.00 3.02
4099 4343 6.800072 AGTTCCTATAAGTCCCTTCTTGAG 57.200 41.667 0.00 0.00 0.00 3.02
4100 4344 6.503944 AGTTCCTATAAGTCCCTTCTTGAGA 58.496 40.000 0.00 0.00 0.00 3.27
4101 4345 6.609616 AGTTCCTATAAGTCCCTTCTTGAGAG 59.390 42.308 0.00 0.00 0.00 3.20
4102 4346 6.093617 TCCTATAAGTCCCTTCTTGAGAGT 57.906 41.667 0.00 0.00 0.00 3.24
4103 4347 6.130569 TCCTATAAGTCCCTTCTTGAGAGTC 58.869 44.000 0.00 0.00 0.00 3.36
4104 4348 6.068735 TCCTATAAGTCCCTTCTTGAGAGTCT 60.069 42.308 0.00 0.00 0.00 3.24
4105 4349 6.609616 CCTATAAGTCCCTTCTTGAGAGTCTT 59.390 42.308 0.00 0.00 0.00 3.01
4106 4350 7.780745 CCTATAAGTCCCTTCTTGAGAGTCTTA 59.219 40.741 0.00 0.00 0.00 2.10
4107 4351 9.362151 CTATAAGTCCCTTCTTGAGAGTCTTAT 57.638 37.037 0.00 0.00 32.14 1.73
4108 4352 6.943899 AAGTCCCTTCTTGAGAGTCTTATT 57.056 37.500 0.00 0.00 0.00 1.40
4109 4353 6.943899 AGTCCCTTCTTGAGAGTCTTATTT 57.056 37.500 0.00 0.00 0.00 1.40
4110 4354 6.941857 AGTCCCTTCTTGAGAGTCTTATTTC 58.058 40.000 0.00 0.00 0.00 2.17
4111 4355 6.498651 AGTCCCTTCTTGAGAGTCTTATTTCA 59.501 38.462 0.00 0.00 0.00 2.69
4112 4356 7.181845 AGTCCCTTCTTGAGAGTCTTATTTCAT 59.818 37.037 0.00 0.00 0.00 2.57
4113 4357 8.478877 GTCCCTTCTTGAGAGTCTTATTTCATA 58.521 37.037 0.00 0.00 0.00 2.15
4114 4358 9.046846 TCCCTTCTTGAGAGTCTTATTTCATAA 57.953 33.333 0.00 0.00 0.00 1.90
4115 4359 9.323985 CCCTTCTTGAGAGTCTTATTTCATAAG 57.676 37.037 0.00 0.00 42.78 1.73
4116 4360 9.883142 CCTTCTTGAGAGTCTTATTTCATAAGT 57.117 33.333 0.00 0.00 42.21 2.24
4118 4362 9.877178 TTCTTGAGAGTCTTATTTCATAAGTCC 57.123 33.333 0.00 0.00 42.21 3.85
4119 4363 8.478877 TCTTGAGAGTCTTATTTCATAAGTCCC 58.521 37.037 0.00 0.00 42.21 4.46
4120 4364 7.733773 TGAGAGTCTTATTTCATAAGTCCCA 57.266 36.000 0.00 0.00 42.21 4.37
4121 4365 8.146053 TGAGAGTCTTATTTCATAAGTCCCAA 57.854 34.615 0.00 0.00 42.21 4.12
4122 4366 8.602424 TGAGAGTCTTATTTCATAAGTCCCAAA 58.398 33.333 0.00 0.00 42.21 3.28
4123 4367 9.620259 GAGAGTCTTATTTCATAAGTCCCAAAT 57.380 33.333 0.00 0.00 42.21 2.32
4124 4368 9.401058 AGAGTCTTATTTCATAAGTCCCAAATG 57.599 33.333 3.93 0.00 42.21 2.32
4125 4369 8.000780 AGTCTTATTTCATAAGTCCCAAATGC 57.999 34.615 3.93 0.00 42.21 3.56
4126 4370 7.068716 AGTCTTATTTCATAAGTCCCAAATGCC 59.931 37.037 3.93 0.00 42.21 4.40
4127 4371 6.323739 TCTTATTTCATAAGTCCCAAATGCCC 59.676 38.462 3.93 0.00 42.21 5.36
4128 4372 3.464720 TTCATAAGTCCCAAATGCCCA 57.535 42.857 0.00 0.00 0.00 5.36
4129 4373 2.733956 TCATAAGTCCCAAATGCCCAC 58.266 47.619 0.00 0.00 0.00 4.61
4130 4374 2.311542 TCATAAGTCCCAAATGCCCACT 59.688 45.455 0.00 0.00 0.00 4.00
4131 4375 2.990740 TAAGTCCCAAATGCCCACTT 57.009 45.000 0.00 0.00 0.00 3.16
4132 4376 2.101640 AAGTCCCAAATGCCCACTTT 57.898 45.000 0.00 0.00 0.00 2.66
4133 4377 2.990740 AGTCCCAAATGCCCACTTTA 57.009 45.000 0.00 0.00 0.00 1.85
4134 4378 3.252554 AGTCCCAAATGCCCACTTTAA 57.747 42.857 0.00 0.00 0.00 1.52
4135 4379 3.165071 AGTCCCAAATGCCCACTTTAAG 58.835 45.455 0.00 0.00 0.00 1.85
4136 4380 2.897326 GTCCCAAATGCCCACTTTAAGT 59.103 45.455 0.00 0.00 0.00 2.24
4137 4381 3.056821 GTCCCAAATGCCCACTTTAAGTC 60.057 47.826 0.00 0.00 0.00 3.01
4138 4382 2.233676 CCCAAATGCCCACTTTAAGTCC 59.766 50.000 0.00 0.00 0.00 3.85
4139 4383 2.233676 CCAAATGCCCACTTTAAGTCCC 59.766 50.000 0.00 0.00 0.00 4.46
4140 4384 3.165071 CAAATGCCCACTTTAAGTCCCT 58.835 45.455 0.00 0.00 0.00 4.20
4141 4385 4.340617 CAAATGCCCACTTTAAGTCCCTA 58.659 43.478 0.00 0.00 0.00 3.53
4142 4386 4.881157 AATGCCCACTTTAAGTCCCTAT 57.119 40.909 0.00 0.00 0.00 2.57
4143 4387 5.987019 AATGCCCACTTTAAGTCCCTATA 57.013 39.130 0.00 0.00 0.00 1.31
4144 4388 5.987019 ATGCCCACTTTAAGTCCCTATAA 57.013 39.130 0.00 0.00 0.00 0.98
4145 4389 5.367945 TGCCCACTTTAAGTCCCTATAAG 57.632 43.478 0.00 0.00 0.00 1.73
4146 4390 4.786454 TGCCCACTTTAAGTCCCTATAAGT 59.214 41.667 0.00 0.00 0.00 2.24
4147 4391 5.104652 TGCCCACTTTAAGTCCCTATAAGTC 60.105 44.000 0.00 0.00 0.00 3.01
4148 4392 5.686913 GCCCACTTTAAGTCCCTATAAGTCC 60.687 48.000 0.00 0.00 0.00 3.85
4149 4393 5.163227 CCCACTTTAAGTCCCTATAAGTCCC 60.163 48.000 0.00 0.00 0.00 4.46
4150 4394 5.666265 CCACTTTAAGTCCCTATAAGTCCCT 59.334 44.000 0.00 0.00 0.00 4.20
4151 4395 6.183360 CCACTTTAAGTCCCTATAAGTCCCTC 60.183 46.154 0.00 0.00 0.00 4.30
4152 4396 5.904169 ACTTTAAGTCCCTATAAGTCCCTCC 59.096 44.000 0.00 0.00 0.00 4.30
4153 4397 5.763239 TTAAGTCCCTATAAGTCCCTCCT 57.237 43.478 0.00 0.00 0.00 3.69
4154 4398 3.621682 AGTCCCTATAAGTCCCTCCTG 57.378 52.381 0.00 0.00 0.00 3.86
4155 4399 2.866454 AGTCCCTATAAGTCCCTCCTGT 59.134 50.000 0.00 0.00 0.00 4.00
4156 4400 3.275228 AGTCCCTATAAGTCCCTCCTGTT 59.725 47.826 0.00 0.00 0.00 3.16
4157 4401 4.038633 GTCCCTATAAGTCCCTCCTGTTT 58.961 47.826 0.00 0.00 0.00 2.83
4158 4402 4.037927 TCCCTATAAGTCCCTCCTGTTTG 58.962 47.826 0.00 0.00 0.00 2.93
4159 4403 3.136626 CCCTATAAGTCCCTCCTGTTTGG 59.863 52.174 0.00 0.00 37.10 3.28
4160 4404 3.780850 CCTATAAGTCCCTCCTGTTTGGT 59.219 47.826 0.00 0.00 37.07 3.67
4161 4405 4.227527 CCTATAAGTCCCTCCTGTTTGGTT 59.772 45.833 0.00 0.00 37.07 3.67
4162 4406 4.741928 ATAAGTCCCTCCTGTTTGGTTT 57.258 40.909 0.00 0.00 37.07 3.27
4163 4407 5.853572 ATAAGTCCCTCCTGTTTGGTTTA 57.146 39.130 0.00 0.00 37.07 2.01
4164 4408 3.790089 AGTCCCTCCTGTTTGGTTTAG 57.210 47.619 0.00 0.00 37.07 1.85
4165 4409 3.323775 AGTCCCTCCTGTTTGGTTTAGA 58.676 45.455 0.00 0.00 37.07 2.10
4166 4410 3.916989 AGTCCCTCCTGTTTGGTTTAGAT 59.083 43.478 0.00 0.00 37.07 1.98
4167 4411 4.010349 GTCCCTCCTGTTTGGTTTAGATG 58.990 47.826 0.00 0.00 37.07 2.90
4168 4412 3.010138 TCCCTCCTGTTTGGTTTAGATGG 59.990 47.826 0.00 0.00 37.07 3.51
4169 4413 3.356290 CCTCCTGTTTGGTTTAGATGGG 58.644 50.000 0.00 0.00 37.07 4.00
4170 4414 3.010138 CCTCCTGTTTGGTTTAGATGGGA 59.990 47.826 0.00 0.00 37.07 4.37
4171 4415 4.010349 CTCCTGTTTGGTTTAGATGGGAC 58.990 47.826 0.00 0.00 37.07 4.46
4172 4416 3.655777 TCCTGTTTGGTTTAGATGGGACT 59.344 43.478 0.00 0.00 37.07 3.85
4173 4417 4.105697 TCCTGTTTGGTTTAGATGGGACTT 59.894 41.667 0.00 0.00 37.07 3.01
4174 4418 5.311121 TCCTGTTTGGTTTAGATGGGACTTA 59.689 40.000 0.00 0.00 37.07 2.24
4175 4419 6.011981 TCCTGTTTGGTTTAGATGGGACTTAT 60.012 38.462 0.00 0.00 37.07 1.73
4176 4420 7.183112 TCCTGTTTGGTTTAGATGGGACTTATA 59.817 37.037 0.00 0.00 37.07 0.98
4177 4421 7.499232 CCTGTTTGGTTTAGATGGGACTTATAG 59.501 40.741 0.00 0.00 0.00 1.31
4178 4422 7.343357 TGTTTGGTTTAGATGGGACTTATAGG 58.657 38.462 0.00 0.00 0.00 2.57
4179 4423 6.509523 TTGGTTTAGATGGGACTTATAGGG 57.490 41.667 0.00 0.00 0.00 3.53
4180 4424 5.795079 TGGTTTAGATGGGACTTATAGGGA 58.205 41.667 0.00 0.00 0.00 4.20
4181 4425 5.605488 TGGTTTAGATGGGACTTATAGGGAC 59.395 44.000 0.00 0.00 0.00 4.46
4182 4426 5.845065 GGTTTAGATGGGACTTATAGGGACT 59.155 44.000 0.00 0.00 46.37 3.85
4183 4427 6.329460 GGTTTAGATGGGACTTATAGGGACTT 59.671 42.308 0.00 0.00 41.75 3.01
4184 4428 7.511714 GGTTTAGATGGGACTTATAGGGACTTA 59.488 40.741 0.00 0.00 41.75 2.24
4185 4429 9.102453 GTTTAGATGGGACTTATAGGGACTTAT 57.898 37.037 0.00 0.00 41.75 1.73
4186 4430 9.684702 TTTAGATGGGACTTATAGGGACTTATT 57.315 33.333 0.00 0.00 41.75 1.40
4187 4431 9.684702 TTAGATGGGACTTATAGGGACTTATTT 57.315 33.333 0.00 0.00 41.75 1.40
4189 4433 9.684702 AGATGGGACTTATAGGGACTTATTTAA 57.315 33.333 0.00 0.00 41.75 1.52
4190 4434 9.945904 GATGGGACTTATAGGGACTTATTTAAG 57.054 37.037 0.00 0.00 41.75 1.85
4221 4465 7.142306 GACTAATAAGTCCCTGGAAACAAAC 57.858 40.000 0.00 0.00 45.50 2.93
4222 4466 6.607019 ACTAATAAGTCCCTGGAAACAAACA 58.393 36.000 0.00 0.00 42.06 2.83
4223 4467 5.784578 AATAAGTCCCTGGAAACAAACAC 57.215 39.130 0.00 0.00 42.06 3.32
4224 4468 2.067365 AGTCCCTGGAAACAAACACC 57.933 50.000 0.00 0.00 42.06 4.16
4225 4469 1.037493 GTCCCTGGAAACAAACACCC 58.963 55.000 0.00 0.00 42.06 4.61
4226 4470 0.930726 TCCCTGGAAACAAACACCCT 59.069 50.000 0.00 0.00 42.06 4.34
4227 4471 1.133606 TCCCTGGAAACAAACACCCTC 60.134 52.381 0.00 0.00 42.06 4.30
4237 4481 1.131638 AAACACCCTCTCAGTGCTCA 58.868 50.000 0.00 0.00 38.87 4.26
4240 4484 1.490490 ACACCCTCTCAGTGCTCAAAA 59.510 47.619 0.00 0.00 38.87 2.44
4266 4510 9.113838 AGTGTTTTATGATGTCATAAGATCACC 57.886 33.333 23.53 15.38 45.99 4.02
4268 4512 9.330063 TGTTTTATGATGTCATAAGATCACCTC 57.670 33.333 13.41 1.11 45.99 3.85
4340 4585 6.107901 AGAATAGGAGGACATAGATTGTGC 57.892 41.667 0.00 0.00 46.30 4.57
4469 4722 8.723942 AGTGTGAATCTTGGATTTCTATGTAC 57.276 34.615 0.00 0.00 0.00 2.90
4535 4788 3.490348 AGTGATGGTCCTGTTTTTCCTG 58.510 45.455 0.00 0.00 0.00 3.86
4539 4792 3.094484 TGGTCCTGTTTTTCCTGTTGT 57.906 42.857 0.00 0.00 0.00 3.32
4641 4895 9.944079 ATATATCCTGTTGCTGATACCTAGTAT 57.056 33.333 0.00 0.00 0.00 2.12
4725 4979 1.992170 CAAAAGCAGAGGCAGCAATC 58.008 50.000 0.00 0.00 44.61 2.67
4872 5126 3.320541 AGAAGAGGTCATCATCGATGGAC 59.679 47.826 24.61 22.14 40.15 4.02
5058 5312 2.939103 CACCTACCATGCTTGCTAGTTC 59.061 50.000 0.00 0.00 0.00 3.01
5079 5333 8.497910 AGTTCTGATATGGTTGGTATCTACAT 57.502 34.615 0.00 0.00 31.38 2.29
5212 5466 7.718272 TTTGCTGGAAAGAAAGATTCATTTG 57.282 32.000 0.00 0.00 0.00 2.32
5269 5523 5.127491 TGGAATTTTCAAACGGACTACAGT 58.873 37.500 0.00 0.00 0.00 3.55
5336 5590 6.191315 TGGCTAGCCCTATTTTGATAACAAA 58.809 36.000 30.81 2.61 38.50 2.83
5449 5720 2.633488 GCTGAGTGTAGATTTGGTCCC 58.367 52.381 0.00 0.00 0.00 4.46
5460 5731 7.393515 GTGTAGATTTGGTCCCAACTCTTAAAT 59.606 37.037 19.99 1.35 41.19 1.40
5466 5737 4.202377 TGGTCCCAACTCTTAAATCGTTCA 60.202 41.667 0.00 0.00 0.00 3.18
5467 5738 4.153655 GGTCCCAACTCTTAAATCGTTCAC 59.846 45.833 0.00 0.00 0.00 3.18
5468 5739 4.995487 GTCCCAACTCTTAAATCGTTCACT 59.005 41.667 0.00 0.00 0.00 3.41
5469 5740 5.469084 GTCCCAACTCTTAAATCGTTCACTT 59.531 40.000 0.00 0.00 0.00 3.16
5470 5741 6.017357 GTCCCAACTCTTAAATCGTTCACTTT 60.017 38.462 0.00 0.00 0.00 2.66
5471 5742 6.544564 TCCCAACTCTTAAATCGTTCACTTTT 59.455 34.615 0.00 0.00 0.00 2.27
5472 5743 7.067737 TCCCAACTCTTAAATCGTTCACTTTTT 59.932 33.333 0.00 0.00 0.00 1.94
5499 5770 2.544267 CCTTCGACCGCTTAATTCCATC 59.456 50.000 0.00 0.00 0.00 3.51
5503 5774 3.635373 TCGACCGCTTAATTCCATCTACT 59.365 43.478 0.00 0.00 0.00 2.57
5512 5783 6.458342 GCTTAATTCCATCTACTTTTGGTCCG 60.458 42.308 0.00 0.00 34.48 4.79
5545 5816 4.947147 TGGTTCCAGTGCGGTGCC 62.947 66.667 0.00 0.00 35.57 5.01
5573 5844 2.026356 TGTGGCACCTATGTGTATTGCT 60.026 45.455 16.26 0.00 44.65 3.91
5592 5863 5.995565 TGCTACATAACCAGTTCACTACT 57.004 39.130 0.00 0.00 37.68 2.57
5683 6023 2.407090 TCGAGTGTCAATGCTCTGTTG 58.593 47.619 0.00 0.00 0.00 3.33
5709 6055 9.520204 GCATAATTAACTAAACTGTTCATGCAT 57.480 29.630 0.00 0.00 0.00 3.96
5724 6124 4.616953 TCATGCATATTTGATGCTTGCAG 58.383 39.130 16.42 2.37 45.47 4.41
5729 6129 6.210796 TGCATATTTGATGCTTGCAGAATAC 58.789 36.000 10.61 0.00 44.79 1.89
5740 6140 6.649155 TGCTTGCAGAATACTGTAGGATAAA 58.351 36.000 0.00 0.00 45.04 1.40
5747 6147 7.222999 GCAGAATACTGTAGGATAAACAGACAC 59.777 40.741 10.02 0.10 45.89 3.67
5748 6148 8.251026 CAGAATACTGTAGGATAAACAGACACA 58.749 37.037 10.02 0.00 45.89 3.72
5749 6149 8.812972 AGAATACTGTAGGATAAACAGACACAA 58.187 33.333 10.02 0.00 45.89 3.33
5750 6150 8.773404 AATACTGTAGGATAAACAGACACAAC 57.227 34.615 10.02 0.00 45.89 3.32
5751 6151 6.169557 ACTGTAGGATAAACAGACACAACA 57.830 37.500 10.02 0.00 45.89 3.33
5752 6152 6.769512 ACTGTAGGATAAACAGACACAACAT 58.230 36.000 10.02 0.00 45.89 2.71
5754 6154 7.173218 ACTGTAGGATAAACAGACACAACATTG 59.827 37.037 10.02 0.00 45.89 2.82
5755 6155 6.995686 TGTAGGATAAACAGACACAACATTGT 59.004 34.615 0.00 0.00 43.36 2.71
5759 6159 7.604164 AGGATAAACAGACACAACATTGTAGAG 59.396 37.037 0.00 0.00 39.91 2.43
5760 6160 7.602644 GGATAAACAGACACAACATTGTAGAGA 59.397 37.037 0.00 0.00 39.91 3.10
5840 6241 1.860078 CCGACAGACAAACCGAAGC 59.140 57.895 0.00 0.00 0.00 3.86
5842 6243 0.508641 CGACAGACAAACCGAAGCTG 59.491 55.000 0.00 0.00 0.00 4.24
5886 6287 1.410365 GCTGGAGGTAGCAGGAGTAGA 60.410 57.143 0.00 0.00 43.17 2.59
5908 6309 1.151668 GAAGAAGAGAGCTTTGCGCA 58.848 50.000 5.66 5.66 42.61 6.09
5915 6316 0.250038 AGAGCTTTGCGCAGTCTGAA 60.250 50.000 11.31 0.00 42.61 3.02
5917 6318 0.250038 AGCTTTGCGCAGTCTGAAGA 60.250 50.000 20.08 0.00 42.61 2.87
5918 6319 0.588252 GCTTTGCGCAGTCTGAAGAA 59.412 50.000 20.08 4.97 38.92 2.52
5919 6320 1.198637 GCTTTGCGCAGTCTGAAGAAT 59.801 47.619 20.08 0.00 38.92 2.40
5920 6321 2.847901 CTTTGCGCAGTCTGAAGAATG 58.152 47.619 11.31 3.46 42.43 2.67
5921 6322 1.159285 TTGCGCAGTCTGAAGAATGG 58.841 50.000 11.31 1.87 40.17 3.16
5922 6323 0.321346 TGCGCAGTCTGAAGAATGGA 59.679 50.000 5.66 0.00 40.17 3.41
5923 6324 1.270785 TGCGCAGTCTGAAGAATGGAA 60.271 47.619 5.66 0.00 40.17 3.53
5924 6325 1.129437 GCGCAGTCTGAAGAATGGAAC 59.871 52.381 0.30 0.00 40.17 3.62
5937 6338 2.627771 TGGAACACTCAACTGGGGT 58.372 52.632 0.00 0.00 0.00 4.95
5938 6339 0.182537 TGGAACACTCAACTGGGGTG 59.817 55.000 0.00 0.00 37.05 4.61
5939 6340 0.182775 GGAACACTCAACTGGGGTGT 59.817 55.000 0.00 0.00 44.63 4.16
5940 6341 1.594331 GAACACTCAACTGGGGTGTC 58.406 55.000 0.00 0.00 42.37 3.67
5941 6342 0.916086 AACACTCAACTGGGGTGTCA 59.084 50.000 0.00 0.00 42.37 3.58
5942 6343 0.469917 ACACTCAACTGGGGTGTCAG 59.530 55.000 0.00 0.00 39.59 3.51
5943 6344 0.758734 CACTCAACTGGGGTGTCAGA 59.241 55.000 0.00 0.00 38.11 3.27
5944 6345 1.140852 CACTCAACTGGGGTGTCAGAA 59.859 52.381 0.00 0.00 38.11 3.02
5949 6350 2.185004 ACTGGGGTGTCAGAAAATCG 57.815 50.000 0.00 0.00 38.11 3.34
5957 6386 5.212934 GGGTGTCAGAAAATCGAAGTTTTC 58.787 41.667 13.84 13.84 44.51 2.29
5980 6409 1.168714 CAAAGCCCACTCTTGTAGCC 58.831 55.000 0.00 0.00 0.00 3.93
5982 6411 2.125106 GCCCACTCTTGTAGCCGG 60.125 66.667 0.00 0.00 0.00 6.13
5990 6419 3.068165 CACTCTTGTAGCCGGTGATATGA 59.932 47.826 1.90 0.00 0.00 2.15
5991 6420 3.898123 ACTCTTGTAGCCGGTGATATGAT 59.102 43.478 1.90 0.00 0.00 2.45
5992 6421 5.048013 CACTCTTGTAGCCGGTGATATGATA 60.048 44.000 1.90 0.00 0.00 2.15
5993 6422 5.717178 ACTCTTGTAGCCGGTGATATGATAT 59.283 40.000 1.90 0.00 0.00 1.63
5994 6423 5.965922 TCTTGTAGCCGGTGATATGATATG 58.034 41.667 1.90 0.00 0.00 1.78
6003 6432 6.333416 CCGGTGATATGATATGGAGTACTTG 58.667 44.000 0.00 0.00 0.00 3.16
6058 6487 0.617820 TGTAGGTCAGGAAGCTCCCC 60.618 60.000 0.00 0.00 37.19 4.81
6111 6579 2.433970 TGATCGGCCTGATGATGTGTAA 59.566 45.455 13.68 0.00 37.47 2.41
6183 6651 9.123902 CTCCAGTGTCAAATATTGGATTCATTA 57.876 33.333 0.00 0.00 37.32 1.90
6268 6783 0.467290 GGGAACAAGTGTTGGCTGGA 60.467 55.000 0.42 0.00 38.56 3.86
6284 6799 1.470098 CTGGACTTGGAATGCTTTCGG 59.530 52.381 6.28 2.62 32.28 4.30
6349 6873 0.688749 AGCAAATCCAAGCCCCATCC 60.689 55.000 0.00 0.00 0.00 3.51
6350 6874 2.019897 GCAAATCCAAGCCCCATCCG 62.020 60.000 0.00 0.00 0.00 4.18
6351 6875 1.076044 AAATCCAAGCCCCATCCGG 60.076 57.895 0.00 0.00 0.00 5.14
6354 6878 1.580066 ATCCAAGCCCCATCCGGAAA 61.580 55.000 9.01 0.00 0.00 3.13
6355 6879 1.754234 CCAAGCCCCATCCGGAAAG 60.754 63.158 9.01 3.86 0.00 2.62
6356 6880 1.754234 CAAGCCCCATCCGGAAAGG 60.754 63.158 9.01 14.24 42.97 3.11
6357 6881 2.238701 AAGCCCCATCCGGAAAGGT 61.239 57.895 21.04 8.53 41.99 3.50
6358 6882 2.440247 GCCCCATCCGGAAAGGTG 60.440 66.667 21.04 13.43 41.99 4.00
6359 6883 3.087065 CCCCATCCGGAAAGGTGT 58.913 61.111 21.04 0.00 41.99 4.16
6360 6884 1.378514 CCCCATCCGGAAAGGTGTG 60.379 63.158 21.04 9.19 41.99 3.82
6362 6886 1.378762 CCATCCGGAAAGGTGTGGT 59.621 57.895 9.01 0.00 39.95 4.16
6364 6888 1.677820 CCATCCGGAAAGGTGTGGTAC 60.678 57.143 9.01 0.00 39.95 3.34
6365 6889 1.278127 CATCCGGAAAGGTGTGGTACT 59.722 52.381 9.01 0.00 41.99 2.73
6386 6928 1.219664 CCGGGTTATCCAAGACGCA 59.780 57.895 0.00 0.00 34.36 5.24
6401 6943 4.290793 GCAGCTGCTATGCGTCGC 62.291 66.667 31.33 11.10 38.21 5.19
6402 6944 3.634072 CAGCTGCTATGCGTCGCC 61.634 66.667 15.88 0.00 38.13 5.54
6457 7012 3.274586 CAGCCATCCACGCATCCG 61.275 66.667 0.00 0.00 41.14 4.18
6461 7016 2.969238 CATCCACGCATCCGCCTC 60.969 66.667 0.00 0.00 38.22 4.70
6497 7052 3.103911 CGTTCGTCCGTGTCCTGC 61.104 66.667 0.00 0.00 0.00 4.85
6526 7081 1.068474 CATCTCCCGTTTCGTCACAC 58.932 55.000 0.00 0.00 0.00 3.82
6527 7082 0.966920 ATCTCCCGTTTCGTCACACT 59.033 50.000 0.00 0.00 0.00 3.55
6528 7083 0.313043 TCTCCCGTTTCGTCACACTC 59.687 55.000 0.00 0.00 0.00 3.51
6529 7084 0.031585 CTCCCGTTTCGTCACACTCA 59.968 55.000 0.00 0.00 0.00 3.41
6530 7085 0.249155 TCCCGTTTCGTCACACTCAC 60.249 55.000 0.00 0.00 0.00 3.51
6531 7086 0.528901 CCCGTTTCGTCACACTCACA 60.529 55.000 0.00 0.00 0.00 3.58
6603 7158 7.059202 TGATTCAGCATATATCCATATCGCT 57.941 36.000 0.00 0.00 34.55 4.93
6645 7200 0.667487 TTCTCCACTGCTTCGCTTCG 60.667 55.000 0.00 0.00 0.00 3.79
6651 7206 1.214062 CTGCTTCGCTTCGTCTCCT 59.786 57.895 0.00 0.00 0.00 3.69
6699 7255 0.376852 GCGCCTGCGTGAAATTATGA 59.623 50.000 13.57 0.00 42.09 2.15
6700 7256 1.002468 GCGCCTGCGTGAAATTATGAT 60.002 47.619 13.57 0.00 42.09 2.45
6701 7257 2.642995 CGCCTGCGTGAAATTATGATG 58.357 47.619 2.83 0.00 34.35 3.07
6702 7258 2.388121 GCCTGCGTGAAATTATGATGC 58.612 47.619 0.00 0.00 0.00 3.91
6703 7259 2.223548 GCCTGCGTGAAATTATGATGCA 60.224 45.455 0.00 0.00 0.00 3.96
6748 7308 0.387929 CATTCATCACCTGCCATGGC 59.612 55.000 30.54 30.54 42.35 4.40
6778 7344 8.986477 AATAAATAGCAAAAACTCACATCCAC 57.014 30.769 0.00 0.00 0.00 4.02
6782 7348 3.042887 GCAAAAACTCACATCCACGTTC 58.957 45.455 0.00 0.00 0.00 3.95
6805 7371 1.255667 AACCACCTAGCGACGACCAT 61.256 55.000 0.00 0.00 0.00 3.55
6892 7458 5.258456 ACTTGTTGAAGTAGACAGTTCGA 57.742 39.130 0.00 0.00 40.85 3.71
6893 7459 5.657474 ACTTGTTGAAGTAGACAGTTCGAA 58.343 37.500 0.00 0.00 40.85 3.71
6906 7472 1.455786 AGTTCGAAAAGTCATCGTGCG 59.544 47.619 0.00 0.00 40.99 5.34
6945 7511 5.242795 AGGGCATTAGAACAACAGTAGTT 57.757 39.130 0.00 0.00 38.88 2.24
7000 7566 5.651530 ACAACCTATAGACACACGAATGAG 58.348 41.667 0.00 0.00 0.00 2.90
7158 7727 6.909158 AGAACCTTATTCCATCTTTAGGGAGA 59.091 38.462 0.00 0.00 36.79 3.71
7219 7788 7.660208 TCCTAAATGAACTCAGAAAACACCTAC 59.340 37.037 0.00 0.00 0.00 3.18
7220 7789 6.635030 AAATGAACTCAGAAAACACCTACC 57.365 37.500 0.00 0.00 0.00 3.18
7221 7790 5.568620 ATGAACTCAGAAAACACCTACCT 57.431 39.130 0.00 0.00 0.00 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
442 446 4.153411 TCTTCGTTTCCCTTTCTCTCTCT 58.847 43.478 0.00 0.00 0.00 3.10
443 447 4.522722 TCTTCGTTTCCCTTTCTCTCTC 57.477 45.455 0.00 0.00 0.00 3.20
444 448 4.101119 TGTTCTTCGTTTCCCTTTCTCTCT 59.899 41.667 0.00 0.00 0.00 3.10
445 449 4.377897 TGTTCTTCGTTTCCCTTTCTCTC 58.622 43.478 0.00 0.00 0.00 3.20
603 617 2.864343 CGAAAATAGTAGCTTCGGGTGG 59.136 50.000 0.00 0.00 38.57 4.61
824 838 4.869297 GCAACTCTAGACTAGTCGTGACTA 59.131 45.833 17.07 9.25 42.54 2.59
825 839 3.685756 GCAACTCTAGACTAGTCGTGACT 59.314 47.826 17.07 7.77 45.02 3.41
826 840 3.181508 GGCAACTCTAGACTAGTCGTGAC 60.182 52.174 17.07 8.21 34.09 3.67
827 841 3.008330 GGCAACTCTAGACTAGTCGTGA 58.992 50.000 17.07 16.56 34.09 4.35
828 842 2.223066 CGGCAACTCTAGACTAGTCGTG 60.223 54.545 17.07 13.41 34.09 4.35
829 843 2.008329 CGGCAACTCTAGACTAGTCGT 58.992 52.381 17.07 6.29 34.09 4.34
830 844 1.268133 GCGGCAACTCTAGACTAGTCG 60.268 57.143 17.07 5.64 34.09 4.18
831 845 1.065851 GGCGGCAACTCTAGACTAGTC 59.934 57.143 15.41 15.41 0.00 2.59
832 846 1.104630 GGCGGCAACTCTAGACTAGT 58.895 55.000 3.07 0.00 0.00 2.57
833 847 0.386113 GGGCGGCAACTCTAGACTAG 59.614 60.000 12.47 2.81 0.00 2.57
834 848 1.041447 GGGGCGGCAACTCTAGACTA 61.041 60.000 12.47 0.00 0.00 2.59
835 849 2.359967 GGGGCGGCAACTCTAGACT 61.360 63.158 12.47 0.00 0.00 3.24
836 850 2.187163 GGGGCGGCAACTCTAGAC 59.813 66.667 12.47 0.00 0.00 2.59
837 851 2.038975 AGGGGCGGCAACTCTAGA 59.961 61.111 12.47 0.00 0.00 2.43
838 852 2.187946 CAGGGGCGGCAACTCTAG 59.812 66.667 12.47 0.00 0.00 2.43
839 853 2.284331 TCAGGGGCGGCAACTCTA 60.284 61.111 12.47 0.00 0.00 2.43
840 854 3.710722 CTCAGGGGCGGCAACTCT 61.711 66.667 12.47 0.00 0.00 3.24
849 863 4.500116 GACGAGTCGCTCAGGGGC 62.500 72.222 13.59 0.00 0.00 5.80
850 864 4.180946 CGACGAGTCGCTCAGGGG 62.181 72.222 13.59 0.00 46.50 4.79
867 881 4.083802 CCAAGGTTTTTGAGTCGATGAGTC 60.084 45.833 0.00 0.00 33.05 3.36
868 882 3.815401 CCAAGGTTTTTGAGTCGATGAGT 59.185 43.478 0.00 0.00 0.00 3.41
869 883 3.815401 ACCAAGGTTTTTGAGTCGATGAG 59.185 43.478 0.00 0.00 0.00 2.90
870 884 3.815809 ACCAAGGTTTTTGAGTCGATGA 58.184 40.909 0.00 0.00 0.00 2.92
871 885 4.378459 GCTACCAAGGTTTTTGAGTCGATG 60.378 45.833 0.00 0.00 0.00 3.84
872 886 3.751698 GCTACCAAGGTTTTTGAGTCGAT 59.248 43.478 0.00 0.00 0.00 3.59
873 887 3.135994 GCTACCAAGGTTTTTGAGTCGA 58.864 45.455 0.00 0.00 0.00 4.20
874 888 2.875933 TGCTACCAAGGTTTTTGAGTCG 59.124 45.455 0.00 0.00 0.00 4.18
875 889 4.518970 TGATGCTACCAAGGTTTTTGAGTC 59.481 41.667 0.00 0.00 0.00 3.36
876 890 4.469657 TGATGCTACCAAGGTTTTTGAGT 58.530 39.130 0.00 0.00 0.00 3.41
877 891 5.416952 AGATGATGCTACCAAGGTTTTTGAG 59.583 40.000 0.00 0.00 0.00 3.02
878 892 5.324409 AGATGATGCTACCAAGGTTTTTGA 58.676 37.500 0.00 0.00 0.00 2.69
879 893 5.649782 AGATGATGCTACCAAGGTTTTTG 57.350 39.130 0.00 0.00 0.00 2.44
880 894 5.185828 GGAAGATGATGCTACCAAGGTTTTT 59.814 40.000 0.00 0.00 0.00 1.94
881 895 4.706962 GGAAGATGATGCTACCAAGGTTTT 59.293 41.667 0.00 0.00 0.00 2.43
882 896 4.018050 AGGAAGATGATGCTACCAAGGTTT 60.018 41.667 0.00 0.00 0.00 3.27
883 897 3.525199 AGGAAGATGATGCTACCAAGGTT 59.475 43.478 0.00 0.00 0.00 3.50
884 898 3.118112 CAGGAAGATGATGCTACCAAGGT 60.118 47.826 0.00 0.00 0.00 3.50
885 899 3.474600 CAGGAAGATGATGCTACCAAGG 58.525 50.000 0.00 0.00 0.00 3.61
886 900 2.877168 GCAGGAAGATGATGCTACCAAG 59.123 50.000 0.00 0.00 37.00 3.61
887 901 2.421952 GGCAGGAAGATGATGCTACCAA 60.422 50.000 0.00 0.00 39.88 3.67
888 902 1.141657 GGCAGGAAGATGATGCTACCA 59.858 52.381 0.00 0.00 39.88 3.25
889 903 1.419387 AGGCAGGAAGATGATGCTACC 59.581 52.381 0.00 0.00 39.88 3.18
1165 1263 3.002965 GGAACAGTAAAATAATCCGGCGG 59.997 47.826 22.51 22.51 0.00 6.13
1184 1282 4.653801 TGGATTGGATCTATTGACTCGGAA 59.346 41.667 0.00 0.00 0.00 4.30
1186 1284 4.564041 CTGGATTGGATCTATTGACTCGG 58.436 47.826 0.00 0.00 0.00 4.63
1237 1335 2.654877 TCGAAGTTCGACTGGCCC 59.345 61.111 23.54 0.00 44.82 5.80
1285 1387 4.048504 CGTTCGAATTTCTTTTGGCCTTT 58.951 39.130 3.32 0.00 0.00 3.11
1435 1537 2.811317 CACCGACCGAGCAAGCTC 60.811 66.667 11.94 11.94 39.55 4.09
1600 1711 3.325753 ACCTCTGGGAGCAGTGGC 61.326 66.667 0.00 0.00 38.90 5.01
1601 1712 2.667418 CACCTCTGGGAGCAGTGG 59.333 66.667 0.00 0.00 40.57 4.00
1602 1713 2.667418 CCACCTCTGGGAGCAGTG 59.333 66.667 0.00 0.00 33.23 3.66
1767 1899 2.024176 TGGATTACCTTTCAGCGAGC 57.976 50.000 0.00 0.00 37.04 5.03
1811 1943 1.391485 CACTCGACAGAAAAGGCATCG 59.609 52.381 0.00 0.00 0.00 3.84
1822 1954 1.609072 TCACTCCACTTCACTCGACAG 59.391 52.381 0.00 0.00 0.00 3.51
1848 1980 1.533756 CCGAACAGGCAACAAACAGTG 60.534 52.381 0.00 0.00 41.41 3.66
1922 2054 1.737735 CGTTGCCGAGCTCATGTGA 60.738 57.895 15.40 0.00 35.63 3.58
1924 2056 2.434884 CCGTTGCCGAGCTCATGT 60.435 61.111 15.40 0.00 35.63 3.21
2029 2161 2.564553 ATCTGCTTCTGGACGACGCC 62.565 60.000 0.00 0.00 36.15 5.68
2077 2209 1.883021 GCAATGCCGGTTGTAGCTT 59.117 52.632 1.90 0.00 0.00 3.74
2079 2211 2.100216 CGCAATGCCGGTTGTAGC 59.900 61.111 1.90 0.18 0.00 3.58
2116 2248 3.077556 TCCGAGCTCCAGCCCTTC 61.078 66.667 8.47 0.00 43.38 3.46
2233 2365 0.614697 TCAGGATCCACTTCTCGGCA 60.615 55.000 15.82 0.00 0.00 5.69
2356 2488 2.289002 CGAAACAGATGCATAAGCTCCC 59.711 50.000 0.00 0.00 42.74 4.30
2491 2623 2.286523 ACCACTCCTGGCTCTTCCG 61.287 63.158 0.00 0.00 42.08 4.30
2503 2635 2.286872 CTGCTTCCATCATCACCACTC 58.713 52.381 0.00 0.00 0.00 3.51
2509 2641 2.101415 CGACCTACTGCTTCCATCATCA 59.899 50.000 0.00 0.00 0.00 3.07
2572 2704 0.943673 TTTCTGTCCACGCATGTGTG 59.056 50.000 28.60 28.60 44.92 3.82
2689 2910 7.990886 ACTAACTGTTCAACTTCAAGGTATTGA 59.009 33.333 0.00 0.00 43.72 2.57
2715 2936 4.841813 TGTGGGGTTGAAGTGTAGAATCTA 59.158 41.667 0.00 0.00 0.00 1.98
2726 2947 1.953686 ACGACAATTGTGGGGTTGAAG 59.046 47.619 22.41 3.63 0.00 3.02
2748 2969 7.123247 ACCAAAAGGGATGTAAGATTTGAGATG 59.877 37.037 0.00 0.00 41.15 2.90
2925 3148 5.449304 AGTTTATTTGAGCACGCAAAGTAC 58.551 37.500 5.79 4.02 40.68 2.73
3049 3272 1.527433 GGTTGCTCCTTGTTGGCCTC 61.527 60.000 3.32 0.00 35.26 4.70
3068 3291 0.745845 CTGGACTGGAAATCGCAGGG 60.746 60.000 0.00 0.00 0.00 4.45
3073 3296 5.419542 TCTTTATGACTGGACTGGAAATCG 58.580 41.667 0.00 0.00 0.00 3.34
3405 3628 8.218338 TGTAAACAAAATGGCAAACATGAAAT 57.782 26.923 0.00 0.00 40.44 2.17
3574 3816 5.248020 TGGCCTTTTCATTAATCACACCAAT 59.752 36.000 3.32 0.00 0.00 3.16
3578 3820 5.127682 AGGATGGCCTTTTCATTAATCACAC 59.872 40.000 3.32 0.00 43.90 3.82
3596 3838 0.254178 AGCTTGGCACTGTAGGATGG 59.746 55.000 0.00 0.00 0.00 3.51
3635 3877 5.116084 ACCCATATGCATTCTGTACACTT 57.884 39.130 3.54 0.00 0.00 3.16
3667 3909 3.005897 ACGGCTACCATACTTAGCTCATG 59.994 47.826 0.00 0.00 41.55 3.07
3693 3935 7.220683 CGTAGTAGCTAGATCTATACTCGGTTC 59.779 44.444 16.02 3.82 31.25 3.62
3718 3960 0.969149 TAGCATATCAGGAGGCCACG 59.031 55.000 5.01 0.00 0.00 4.94
3763 4005 7.063426 CAGTTAACTGTCGATTGCTTATTCAGA 59.937 37.037 24.70 0.00 39.09 3.27
3825 4067 5.371115 TTTGCATGTTACTCCAGCTAAAC 57.629 39.130 0.00 0.00 0.00 2.01
3944 4188 0.482446 ATGAACCAAACAGGGCCTGA 59.518 50.000 38.99 15.25 43.89 3.86
3945 4189 2.214376 TATGAACCAAACAGGGCCTG 57.786 50.000 31.62 31.62 43.89 4.85
3946 4190 2.110011 ACTTATGAACCAAACAGGGCCT 59.890 45.455 0.00 0.00 43.89 5.19
3947 4191 2.492088 GACTTATGAACCAAACAGGGCC 59.508 50.000 0.00 0.00 43.89 5.80
3948 4192 2.492088 GGACTTATGAACCAAACAGGGC 59.508 50.000 0.00 0.00 43.89 5.19
3949 4193 4.034285 AGGACTTATGAACCAAACAGGG 57.966 45.455 0.00 0.00 43.89 4.45
3950 4194 5.045869 TCCTAGGACTTATGAACCAAACAGG 60.046 44.000 7.62 0.00 45.67 4.00
3951 4195 5.875359 GTCCTAGGACTTATGAACCAAACAG 59.125 44.000 31.12 0.00 41.57 3.16
3952 4196 5.801380 GTCCTAGGACTTATGAACCAAACA 58.199 41.667 31.12 0.00 41.57 2.83
3978 4222 7.757611 TGGGACTTATAAGTTGGGACTAAAAA 58.242 34.615 18.96 0.00 39.88 1.94
3979 4223 7.332433 TGGGACTTATAAGTTGGGACTAAAA 57.668 36.000 18.96 0.00 39.88 1.52
3980 4224 6.956102 TGGGACTTATAAGTTGGGACTAAA 57.044 37.500 18.96 0.00 39.88 1.85
3981 4225 6.502863 ACTTGGGACTTATAAGTTGGGACTAA 59.497 38.462 18.96 10.32 39.88 2.24
3982 4226 6.027482 ACTTGGGACTTATAAGTTGGGACTA 58.973 40.000 18.96 3.96 39.88 2.59
3983 4227 4.850386 ACTTGGGACTTATAAGTTGGGACT 59.150 41.667 18.96 0.00 39.88 3.85
3984 4228 5.175388 ACTTGGGACTTATAAGTTGGGAC 57.825 43.478 18.96 6.19 39.88 4.46
3985 4229 4.226620 GGACTTGGGACTTATAAGTTGGGA 59.773 45.833 18.96 6.15 39.88 4.37
3986 4230 4.524053 GGACTTGGGACTTATAAGTTGGG 58.476 47.826 18.96 10.37 39.88 4.12
3987 4231 4.227527 AGGGACTTGGGACTTATAAGTTGG 59.772 45.833 18.96 10.07 34.84 3.77
3988 4232 5.437191 AGGGACTTGGGACTTATAAGTTG 57.563 43.478 18.96 9.81 34.84 3.16
3989 4233 7.578458 TTTAGGGACTTGGGACTTATAAGTT 57.422 36.000 18.96 2.29 38.78 2.66
3990 4234 7.578458 TTTTAGGGACTTGGGACTTATAAGT 57.422 36.000 18.05 18.05 40.66 2.24
3991 4235 8.107729 ACTTTTTAGGGACTTGGGACTTATAAG 58.892 37.037 11.05 11.05 41.75 1.73
3992 4236 7.992295 ACTTTTTAGGGACTTGGGACTTATAA 58.008 34.615 0.00 0.00 41.75 0.98
3993 4237 7.311486 GGACTTTTTAGGGACTTGGGACTTATA 60.311 40.741 0.00 0.00 41.75 0.98
3994 4238 6.464530 ACTTTTTAGGGACTTGGGACTTAT 57.535 37.500 0.00 0.00 41.75 1.73
3995 4239 5.221986 GGACTTTTTAGGGACTTGGGACTTA 60.222 44.000 0.00 0.00 41.75 2.24
3996 4240 4.447325 GGACTTTTTAGGGACTTGGGACTT 60.447 45.833 0.00 0.00 41.75 3.01
3997 4241 3.074094 GGACTTTTTAGGGACTTGGGACT 59.926 47.826 0.00 0.00 41.75 3.85
3998 4242 3.418995 GGACTTTTTAGGGACTTGGGAC 58.581 50.000 0.00 0.00 41.75 4.46
3999 4243 2.377531 GGGACTTTTTAGGGACTTGGGA 59.622 50.000 0.00 0.00 41.75 4.37
4000 4244 2.378886 AGGGACTTTTTAGGGACTTGGG 59.621 50.000 0.00 0.00 34.75 4.12
4001 4245 3.808834 AGGGACTTTTTAGGGACTTGG 57.191 47.619 0.00 0.00 34.75 3.61
4002 4246 6.116126 CAGATAGGGACTTTTTAGGGACTTG 58.884 44.000 0.00 0.00 39.49 3.16
4003 4247 5.791141 ACAGATAGGGACTTTTTAGGGACTT 59.209 40.000 0.00 0.00 39.49 3.01
4004 4248 5.351405 ACAGATAGGGACTTTTTAGGGACT 58.649 41.667 0.00 0.00 41.75 3.85
4005 4249 5.695424 ACAGATAGGGACTTTTTAGGGAC 57.305 43.478 0.00 0.00 41.75 4.46
4006 4250 6.481643 CAAACAGATAGGGACTTTTTAGGGA 58.518 40.000 0.00 0.00 41.75 4.20
4007 4251 5.652452 CCAAACAGATAGGGACTTTTTAGGG 59.348 44.000 0.00 0.00 41.75 3.53
4008 4252 6.246163 ACCAAACAGATAGGGACTTTTTAGG 58.754 40.000 0.00 0.00 41.75 2.69
4009 4253 7.094334 GGAACCAAACAGATAGGGACTTTTTAG 60.094 40.741 0.00 0.00 41.75 1.85
4010 4254 6.717997 GGAACCAAACAGATAGGGACTTTTTA 59.282 38.462 0.00 0.00 41.75 1.52
4011 4255 5.538813 GGAACCAAACAGATAGGGACTTTTT 59.461 40.000 0.00 0.00 41.75 1.94
4012 4256 5.077564 GGAACCAAACAGATAGGGACTTTT 58.922 41.667 0.00 0.00 41.75 2.27
4013 4257 4.354087 AGGAACCAAACAGATAGGGACTTT 59.646 41.667 0.00 0.00 41.75 2.66
4014 4258 3.916989 AGGAACCAAACAGATAGGGACTT 59.083 43.478 0.00 0.00 41.75 3.01
4015 4259 3.264450 CAGGAACCAAACAGATAGGGACT 59.736 47.826 0.00 0.00 46.37 3.85
4016 4260 3.610911 CAGGAACCAAACAGATAGGGAC 58.389 50.000 0.00 0.00 0.00 4.46
4017 4261 2.576191 CCAGGAACCAAACAGATAGGGA 59.424 50.000 0.00 0.00 0.00 4.20
4018 4262 2.357154 CCCAGGAACCAAACAGATAGGG 60.357 54.545 0.00 0.00 0.00 3.53
4019 4263 2.576191 TCCCAGGAACCAAACAGATAGG 59.424 50.000 0.00 0.00 0.00 2.57
4020 4264 3.264450 AGTCCCAGGAACCAAACAGATAG 59.736 47.826 0.00 0.00 0.00 2.08
4021 4265 3.256704 AGTCCCAGGAACCAAACAGATA 58.743 45.455 0.00 0.00 0.00 1.98
4022 4266 2.065799 AGTCCCAGGAACCAAACAGAT 58.934 47.619 0.00 0.00 0.00 2.90
4023 4267 1.518367 AGTCCCAGGAACCAAACAGA 58.482 50.000 0.00 0.00 0.00 3.41
4024 4268 2.364972 AAGTCCCAGGAACCAAACAG 57.635 50.000 0.00 0.00 0.00 3.16
4025 4269 5.073965 ACTTATAAGTCCCAGGAACCAAACA 59.926 40.000 12.50 0.00 32.86 2.83
4026 4270 5.567430 ACTTATAAGTCCCAGGAACCAAAC 58.433 41.667 12.50 0.00 32.86 2.93
4027 4271 5.853572 ACTTATAAGTCCCAGGAACCAAA 57.146 39.130 12.50 0.00 32.86 3.28
4087 4331 6.702329 TGAAATAAGACTCTCAAGAAGGGAC 58.298 40.000 0.00 0.00 0.00 4.46
4088 4332 6.935240 TGAAATAAGACTCTCAAGAAGGGA 57.065 37.500 0.00 0.00 0.00 4.20
4104 4348 5.960811 TGGGCATTTGGGACTTATGAAATAA 59.039 36.000 0.00 0.00 36.20 1.40
4105 4349 5.362430 GTGGGCATTTGGGACTTATGAAATA 59.638 40.000 0.00 0.00 0.00 1.40
4106 4350 4.162131 GTGGGCATTTGGGACTTATGAAAT 59.838 41.667 0.00 0.00 0.00 2.17
4107 4351 3.513515 GTGGGCATTTGGGACTTATGAAA 59.486 43.478 0.00 0.00 0.00 2.69
4108 4352 3.096092 GTGGGCATTTGGGACTTATGAA 58.904 45.455 0.00 0.00 0.00 2.57
4109 4353 2.311542 AGTGGGCATTTGGGACTTATGA 59.688 45.455 0.00 0.00 0.00 2.15
4110 4354 2.738743 AGTGGGCATTTGGGACTTATG 58.261 47.619 0.00 0.00 0.00 1.90
4111 4355 3.473113 AAGTGGGCATTTGGGACTTAT 57.527 42.857 0.00 0.00 0.00 1.73
4112 4356 2.990740 AAGTGGGCATTTGGGACTTA 57.009 45.000 0.00 0.00 0.00 2.24
4113 4357 2.101640 AAAGTGGGCATTTGGGACTT 57.898 45.000 0.00 0.00 0.00 3.01
4114 4358 2.990740 TAAAGTGGGCATTTGGGACT 57.009 45.000 0.00 0.00 0.00 3.85
4115 4359 2.897326 ACTTAAAGTGGGCATTTGGGAC 59.103 45.455 0.00 0.00 0.00 4.46
4116 4360 3.161866 GACTTAAAGTGGGCATTTGGGA 58.838 45.455 0.00 0.00 0.00 4.37
4117 4361 2.233676 GGACTTAAAGTGGGCATTTGGG 59.766 50.000 0.00 0.00 0.00 4.12
4118 4362 2.233676 GGGACTTAAAGTGGGCATTTGG 59.766 50.000 0.00 0.00 0.00 3.28
4119 4363 3.165071 AGGGACTTAAAGTGGGCATTTG 58.835 45.455 0.00 0.00 27.25 2.32
4120 4364 3.542969 AGGGACTTAAAGTGGGCATTT 57.457 42.857 0.00 0.00 27.25 2.32
4121 4365 4.881157 ATAGGGACTTAAAGTGGGCATT 57.119 40.909 0.00 0.00 41.75 3.56
4122 4366 5.432060 ACTTATAGGGACTTAAAGTGGGCAT 59.568 40.000 0.00 0.00 39.58 4.40
4123 4367 4.786454 ACTTATAGGGACTTAAAGTGGGCA 59.214 41.667 0.00 0.00 39.58 5.36
4124 4368 5.366460 GACTTATAGGGACTTAAAGTGGGC 58.634 45.833 0.00 0.00 40.60 5.36
4125 4369 5.163227 GGGACTTATAGGGACTTAAAGTGGG 60.163 48.000 0.00 0.00 40.60 4.61
4126 4370 5.666265 AGGGACTTATAGGGACTTAAAGTGG 59.334 44.000 0.00 0.00 40.60 4.00
4127 4371 6.183360 GGAGGGACTTATAGGGACTTAAAGTG 60.183 46.154 0.00 0.00 40.60 3.16
4128 4372 5.904169 GGAGGGACTTATAGGGACTTAAAGT 59.096 44.000 0.00 0.00 42.31 2.66
4129 4373 6.042208 CAGGAGGGACTTATAGGGACTTAAAG 59.958 46.154 0.00 0.00 41.55 1.85
4130 4374 5.903589 CAGGAGGGACTTATAGGGACTTAAA 59.096 44.000 0.00 0.00 41.55 1.52
4131 4375 5.042827 ACAGGAGGGACTTATAGGGACTTAA 60.043 44.000 0.00 0.00 41.55 1.85
4132 4376 4.485021 ACAGGAGGGACTTATAGGGACTTA 59.515 45.833 0.00 0.00 41.55 2.24
4133 4377 3.275228 ACAGGAGGGACTTATAGGGACTT 59.725 47.826 0.00 0.00 41.55 3.01
4134 4378 2.866454 ACAGGAGGGACTTATAGGGACT 59.134 50.000 0.00 0.00 41.55 3.85
4135 4379 3.331718 ACAGGAGGGACTTATAGGGAC 57.668 52.381 0.00 0.00 41.55 4.46
4136 4380 4.037927 CAAACAGGAGGGACTTATAGGGA 58.962 47.826 0.00 0.00 41.55 4.20
4137 4381 3.136626 CCAAACAGGAGGGACTTATAGGG 59.863 52.174 0.00 0.00 41.55 3.53
4138 4382 3.780850 ACCAAACAGGAGGGACTTATAGG 59.219 47.826 0.00 0.00 41.55 2.57
4139 4383 5.437191 AACCAAACAGGAGGGACTTATAG 57.563 43.478 0.00 0.00 41.55 1.31
4140 4384 5.853572 AAACCAAACAGGAGGGACTTATA 57.146 39.130 0.00 0.00 41.55 0.98
4141 4385 4.741928 AAACCAAACAGGAGGGACTTAT 57.258 40.909 0.00 0.00 41.55 1.73
4142 4386 4.909088 TCTAAACCAAACAGGAGGGACTTA 59.091 41.667 0.00 0.00 41.55 2.24
4143 4387 3.720002 TCTAAACCAAACAGGAGGGACTT 59.280 43.478 0.00 0.00 41.55 3.01
4145 4389 3.782656 TCTAAACCAAACAGGAGGGAC 57.217 47.619 0.00 0.00 41.22 4.46
4146 4390 3.010138 CCATCTAAACCAAACAGGAGGGA 59.990 47.826 0.00 0.00 41.22 4.20
4147 4391 3.356290 CCATCTAAACCAAACAGGAGGG 58.644 50.000 0.00 0.00 41.22 4.30
4148 4392 3.010138 TCCCATCTAAACCAAACAGGAGG 59.990 47.826 0.00 0.00 41.22 4.30
4149 4393 4.010349 GTCCCATCTAAACCAAACAGGAG 58.990 47.826 0.00 0.00 41.22 3.69
4150 4394 3.655777 AGTCCCATCTAAACCAAACAGGA 59.344 43.478 0.00 0.00 41.22 3.86
4151 4395 4.034285 AGTCCCATCTAAACCAAACAGG 57.966 45.455 0.00 0.00 45.67 4.00
4152 4396 7.499232 CCTATAAGTCCCATCTAAACCAAACAG 59.501 40.741 0.00 0.00 0.00 3.16
4153 4397 7.343357 CCTATAAGTCCCATCTAAACCAAACA 58.657 38.462 0.00 0.00 0.00 2.83
4154 4398 6.771267 CCCTATAAGTCCCATCTAAACCAAAC 59.229 42.308 0.00 0.00 0.00 2.93
4155 4399 6.679303 TCCCTATAAGTCCCATCTAAACCAAA 59.321 38.462 0.00 0.00 0.00 3.28
4156 4400 6.100714 GTCCCTATAAGTCCCATCTAAACCAA 59.899 42.308 0.00 0.00 0.00 3.67
4157 4401 5.605488 GTCCCTATAAGTCCCATCTAAACCA 59.395 44.000 0.00 0.00 0.00 3.67
4158 4402 5.845065 AGTCCCTATAAGTCCCATCTAAACC 59.155 44.000 0.00 0.00 0.00 3.27
4159 4403 6.997942 AGTCCCTATAAGTCCCATCTAAAC 57.002 41.667 0.00 0.00 0.00 2.01
4160 4404 9.684702 AATAAGTCCCTATAAGTCCCATCTAAA 57.315 33.333 0.00 0.00 0.00 1.85
4161 4405 9.684702 AAATAAGTCCCTATAAGTCCCATCTAA 57.315 33.333 0.00 0.00 0.00 2.10
4163 4407 9.684702 TTAAATAAGTCCCTATAAGTCCCATCT 57.315 33.333 0.00 0.00 0.00 2.90
4164 4408 9.945904 CTTAAATAAGTCCCTATAAGTCCCATC 57.054 37.037 0.00 0.00 0.00 3.51
4165 4409 9.461734 ACTTAAATAAGTCCCTATAAGTCCCAT 57.538 33.333 0.00 0.00 42.52 4.00
4166 4410 8.865244 ACTTAAATAAGTCCCTATAAGTCCCA 57.135 34.615 0.00 0.00 42.52 4.37
4185 4429 8.349882 AGGGACTTATTAGTCTAGGGACTTAAA 58.650 37.037 11.39 0.00 43.66 1.52
4186 4430 7.783596 CAGGGACTTATTAGTCTAGGGACTTAA 59.216 40.741 11.39 0.00 44.15 1.85
4187 4431 7.296098 CAGGGACTTATTAGTCTAGGGACTTA 58.704 42.308 11.39 0.00 44.15 2.24
4188 4432 6.137559 CAGGGACTTATTAGTCTAGGGACTT 58.862 44.000 11.39 0.00 44.15 3.01
4198 4442 6.489022 GTGTTTGTTTCCAGGGACTTATTAGT 59.511 38.462 0.00 0.00 34.60 2.24
4199 4443 6.072119 GGTGTTTGTTTCCAGGGACTTATTAG 60.072 42.308 0.00 0.00 34.60 1.73
4200 4444 5.771165 GGTGTTTGTTTCCAGGGACTTATTA 59.229 40.000 0.00 0.00 34.60 0.98
4201 4445 4.587262 GGTGTTTGTTTCCAGGGACTTATT 59.413 41.667 0.00 0.00 34.60 1.40
4202 4446 4.149598 GGTGTTTGTTTCCAGGGACTTAT 58.850 43.478 0.00 0.00 34.60 1.73
4203 4447 3.558033 GGTGTTTGTTTCCAGGGACTTA 58.442 45.455 0.00 0.00 34.60 2.24
4204 4448 2.384828 GGTGTTTGTTTCCAGGGACTT 58.615 47.619 0.00 0.00 34.60 3.01
4205 4449 1.411074 GGGTGTTTGTTTCCAGGGACT 60.411 52.381 0.00 0.00 43.88 3.85
4206 4450 1.037493 GGGTGTTTGTTTCCAGGGAC 58.963 55.000 0.00 0.00 0.00 4.46
4207 4451 0.930726 AGGGTGTTTGTTTCCAGGGA 59.069 50.000 0.00 0.00 0.00 4.20
4208 4452 1.133482 AGAGGGTGTTTGTTTCCAGGG 60.133 52.381 0.00 0.00 0.00 4.45
4209 4453 2.230660 GAGAGGGTGTTTGTTTCCAGG 58.769 52.381 0.00 0.00 0.00 4.45
4210 4454 2.880890 CTGAGAGGGTGTTTGTTTCCAG 59.119 50.000 0.00 0.00 0.00 3.86
4211 4455 2.241176 ACTGAGAGGGTGTTTGTTTCCA 59.759 45.455 0.00 0.00 0.00 3.53
4212 4456 2.618709 CACTGAGAGGGTGTTTGTTTCC 59.381 50.000 0.00 0.00 0.00 3.13
4213 4457 2.033424 GCACTGAGAGGGTGTTTGTTTC 59.967 50.000 0.00 0.00 37.07 2.78
4214 4458 2.024414 GCACTGAGAGGGTGTTTGTTT 58.976 47.619 0.00 0.00 37.07 2.83
4215 4459 1.212935 AGCACTGAGAGGGTGTTTGTT 59.787 47.619 0.00 0.00 37.07 2.83
4216 4460 0.839946 AGCACTGAGAGGGTGTTTGT 59.160 50.000 0.00 0.00 37.07 2.83
4217 4461 1.202687 TGAGCACTGAGAGGGTGTTTG 60.203 52.381 0.00 0.00 37.07 2.93
4218 4462 1.131638 TGAGCACTGAGAGGGTGTTT 58.868 50.000 0.00 0.00 37.07 2.83
4219 4463 1.131638 TTGAGCACTGAGAGGGTGTT 58.868 50.000 0.00 0.00 37.07 3.32
4220 4464 1.131638 TTTGAGCACTGAGAGGGTGT 58.868 50.000 0.00 0.00 37.07 4.16
4221 4465 2.149578 CTTTTGAGCACTGAGAGGGTG 58.850 52.381 0.00 0.00 37.70 4.61
4222 4466 1.771255 ACTTTTGAGCACTGAGAGGGT 59.229 47.619 0.00 0.00 0.00 4.34
4223 4467 2.149578 CACTTTTGAGCACTGAGAGGG 58.850 52.381 0.00 0.00 0.00 4.30
4224 4468 2.843701 ACACTTTTGAGCACTGAGAGG 58.156 47.619 0.00 0.00 0.00 3.69
4225 4469 4.889832 AAACACTTTTGAGCACTGAGAG 57.110 40.909 0.00 0.00 0.00 3.20
4226 4470 6.542005 TCATAAAACACTTTTGAGCACTGAGA 59.458 34.615 0.00 0.00 34.19 3.27
4227 4471 6.728200 TCATAAAACACTTTTGAGCACTGAG 58.272 36.000 0.00 0.00 34.19 3.35
4240 4484 9.113838 GGTGATCTTATGACATCATAAAACACT 57.886 33.333 24.49 10.24 45.11 3.55
4370 4619 6.493115 TCTCCTTTTCATTATTTGCCAGTTGA 59.507 34.615 0.00 0.00 0.00 3.18
4484 4737 8.237267 ACTGCATAGCAAACAACTAAAAGTATC 58.763 33.333 0.00 0.00 38.41 2.24
4539 4792 8.046294 ACGGCAAACATTATTATCTTGTGTAA 57.954 30.769 0.00 0.00 0.00 2.41
4600 4854 8.710749 ACAGGATATATGCCATAATTTGTGTT 57.289 30.769 0.00 0.00 0.00 3.32
4613 4867 5.738909 AGGTATCAGCAACAGGATATATGC 58.261 41.667 0.00 0.00 39.06 3.14
4725 4979 2.781681 ACAATACCTCCAACTTCCGG 57.218 50.000 0.00 0.00 0.00 5.14
4872 5126 4.237349 ACGTAGTTTGCCCAAAATTCTG 57.763 40.909 0.00 0.00 37.78 3.02
5014 5268 2.260743 GCAGCTGAAAGGCTTGCC 59.739 61.111 20.43 2.97 41.00 4.52
5058 5312 9.730705 AATCAATGTAGATACCAACCATATCAG 57.269 33.333 0.00 0.00 32.37 2.90
5079 5333 8.062065 ACTCACCAAAAAGTTTCTACAATCAA 57.938 30.769 0.00 0.00 0.00 2.57
5189 5443 7.053316 TCAAATGAATCTTTCTTTCCAGCAA 57.947 32.000 0.00 0.00 0.00 3.91
5212 5466 4.166144 TCCCTCTGGAAACCCTATTTGATC 59.834 45.833 0.00 0.00 37.86 2.92
5258 5512 4.433615 CATGCTGATAAACTGTAGTCCGT 58.566 43.478 0.00 0.00 0.00 4.69
5259 5513 3.246226 GCATGCTGATAAACTGTAGTCCG 59.754 47.826 11.37 0.00 0.00 4.79
5269 5523 3.373748 CCAACGTACTGCATGCTGATAAA 59.626 43.478 28.74 9.92 0.00 1.40
5336 5590 7.352738 AGGGAGATCAAGCTAATGAAGATTTT 58.647 34.615 0.00 0.00 29.18 1.82
5347 5601 4.383552 GCTTCAGAAAGGGAGATCAAGCTA 60.384 45.833 0.00 0.00 33.68 3.32
5472 5743 2.547299 TAAGCGGTCGAAGGGAAAAA 57.453 45.000 0.00 0.00 0.00 1.94
5477 5748 1.296727 GGAATTAAGCGGTCGAAGGG 58.703 55.000 0.00 0.00 0.00 3.95
5483 5754 6.458342 CCAAAAGTAGATGGAATTAAGCGGTC 60.458 42.308 0.00 0.00 39.12 4.79
5485 5756 5.357032 ACCAAAAGTAGATGGAATTAAGCGG 59.643 40.000 0.00 0.00 39.12 5.52
5499 5770 3.508793 TCACTCCTACGGACCAAAAGTAG 59.491 47.826 0.00 0.00 37.99 2.57
5503 5774 4.360951 AAATCACTCCTACGGACCAAAA 57.639 40.909 0.00 0.00 0.00 2.44
5512 5783 5.253330 TGGAACCATCAAAATCACTCCTAC 58.747 41.667 0.00 0.00 0.00 3.18
5545 5816 1.134699 ACATAGGTGCCACATCAGTCG 60.135 52.381 0.00 0.00 0.00 4.18
5559 5830 7.217200 ACTGGTTATGTAGCAATACACATAGG 58.783 38.462 0.00 0.00 38.50 2.57
5661 6001 3.325293 ACAGAGCATTGACACTCGAAT 57.675 42.857 0.00 0.00 37.99 3.34
5664 6004 1.136141 GCAACAGAGCATTGACACTCG 60.136 52.381 0.00 0.00 37.99 4.18
5683 6023 8.909708 TGCATGAACAGTTTAGTTAATTATGC 57.090 30.769 0.00 0.00 36.41 3.14
5696 6042 6.216801 AGCATCAAATATGCATGAACAGTT 57.783 33.333 10.16 0.00 46.77 3.16
5698 6044 5.051039 GCAAGCATCAAATATGCATGAACAG 60.051 40.000 16.70 0.00 43.82 3.16
5702 6048 4.339814 TCTGCAAGCATCAAATATGCATGA 59.660 37.500 16.70 0.00 43.82 3.07
5709 6055 7.227314 CCTACAGTATTCTGCAAGCATCAAATA 59.773 37.037 0.00 0.00 44.77 1.40
5724 6124 8.870879 GTTGTGTCTGTTTATCCTACAGTATTC 58.129 37.037 0.00 0.00 42.77 1.75
5729 6129 7.173218 ACAATGTTGTGTCTGTTTATCCTACAG 59.827 37.037 0.00 0.00 41.00 2.74
5740 6140 5.858381 ACATCTCTACAATGTTGTGTCTGT 58.142 37.500 8.57 0.00 42.31 3.41
5873 6274 7.221450 TCTCTTCTTCTATCTACTCCTGCTAC 58.779 42.308 0.00 0.00 0.00 3.58
5886 6287 3.194062 GCGCAAAGCTCTCTTCTTCTAT 58.806 45.455 0.30 0.00 44.04 1.98
5908 6309 4.963318 TGAGTGTTCCATTCTTCAGACT 57.037 40.909 0.00 0.00 0.00 3.24
5915 6316 2.224867 CCCCAGTTGAGTGTTCCATTCT 60.225 50.000 0.00 0.00 0.00 2.40
5917 6318 1.499007 ACCCCAGTTGAGTGTTCCATT 59.501 47.619 0.00 0.00 0.00 3.16
5918 6319 1.149101 ACCCCAGTTGAGTGTTCCAT 58.851 50.000 0.00 0.00 0.00 3.41
5919 6320 0.182537 CACCCCAGTTGAGTGTTCCA 59.817 55.000 0.00 0.00 0.00 3.53
5920 6321 0.182775 ACACCCCAGTTGAGTGTTCC 59.817 55.000 0.00 0.00 41.86 3.62
5921 6322 1.134220 TGACACCCCAGTTGAGTGTTC 60.134 52.381 8.59 4.72 44.45 3.18
5922 6323 0.916086 TGACACCCCAGTTGAGTGTT 59.084 50.000 8.59 0.00 44.45 3.32
5923 6324 0.469917 CTGACACCCCAGTTGAGTGT 59.530 55.000 7.37 7.37 46.97 3.55
5924 6325 0.758734 TCTGACACCCCAGTTGAGTG 59.241 55.000 0.00 0.00 35.71 3.51
5925 6326 1.507140 TTCTGACACCCCAGTTGAGT 58.493 50.000 0.00 0.00 35.71 3.41
5926 6327 2.638480 TTTCTGACACCCCAGTTGAG 57.362 50.000 0.00 0.00 35.71 3.02
5927 6328 3.486383 GATTTTCTGACACCCCAGTTGA 58.514 45.455 0.00 0.00 35.71 3.18
5928 6329 2.226437 CGATTTTCTGACACCCCAGTTG 59.774 50.000 0.00 0.00 35.71 3.16
5929 6330 2.105821 TCGATTTTCTGACACCCCAGTT 59.894 45.455 0.00 0.00 35.71 3.16
5930 6331 1.697432 TCGATTTTCTGACACCCCAGT 59.303 47.619 0.00 0.00 35.71 4.00
5931 6332 2.472695 TCGATTTTCTGACACCCCAG 57.527 50.000 0.00 0.00 35.55 4.45
5932 6333 2.105821 ACTTCGATTTTCTGACACCCCA 59.894 45.455 0.00 0.00 0.00 4.96
5933 6334 2.779506 ACTTCGATTTTCTGACACCCC 58.220 47.619 0.00 0.00 0.00 4.95
5934 6335 4.830826 AAACTTCGATTTTCTGACACCC 57.169 40.909 0.00 0.00 0.00 4.61
5949 6350 1.336755 TGGGCTTTGCTCGAAAACTTC 59.663 47.619 0.00 0.00 0.00 3.01
5957 6386 0.886490 ACAAGAGTGGGCTTTGCTCG 60.886 55.000 0.00 0.00 34.69 5.03
5980 6409 7.030165 GTCAAGTACTCCATATCATATCACCG 58.970 42.308 0.00 0.00 0.00 4.94
6003 6432 1.746220 ACAGATACAGAGCACCGAGTC 59.254 52.381 0.00 0.00 0.00 3.36
6011 6440 4.253685 TGCTTGGTTTACAGATACAGAGC 58.746 43.478 0.00 0.00 0.00 4.09
6044 6473 1.671901 CGAGAGGGGAGCTTCCTGAC 61.672 65.000 11.94 2.75 36.57 3.51
6058 6487 4.188462 TCAACTAGAGAGAAGCTCGAGAG 58.812 47.826 18.75 3.34 45.89 3.20
6069 6498 3.127895 CAGTCCGGAGTTCAACTAGAGAG 59.872 52.174 9.74 0.00 0.00 3.20
6111 6579 5.126067 CAGAATTCCACGGGAAAGATACAT 58.874 41.667 9.07 0.00 45.41 2.29
6183 6651 2.097466 CGTGGCTCTCACAACTTTGTTT 59.903 45.455 0.00 0.00 46.36 2.83
6268 6783 0.889186 ACGCCGAAAGCATTCCAAGT 60.889 50.000 0.00 0.00 44.04 3.16
6349 6873 1.067071 GGAGAGTACCACACCTTTCCG 60.067 57.143 0.00 0.00 0.00 4.30
6350 6874 1.067071 CGGAGAGTACCACACCTTTCC 60.067 57.143 0.00 0.00 0.00 3.13
6351 6875 1.067071 CCGGAGAGTACCACACCTTTC 60.067 57.143 0.00 0.00 0.00 2.62
6354 6878 1.305046 CCCGGAGAGTACCACACCT 60.305 63.158 0.73 0.00 0.00 4.00
6355 6879 1.190178 AACCCGGAGAGTACCACACC 61.190 60.000 0.73 0.00 0.00 4.16
6356 6880 1.549203 TAACCCGGAGAGTACCACAC 58.451 55.000 0.73 0.00 0.00 3.82
6357 6881 2.381911 GATAACCCGGAGAGTACCACA 58.618 52.381 0.73 0.00 0.00 4.17
6358 6882 1.685517 GGATAACCCGGAGAGTACCAC 59.314 57.143 0.73 0.00 0.00 4.16
6359 6883 1.288633 TGGATAACCCGGAGAGTACCA 59.711 52.381 0.73 2.26 37.93 3.25
6360 6884 2.077687 TGGATAACCCGGAGAGTACC 57.922 55.000 0.73 0.00 37.93 3.34
6362 6886 3.294214 GTCTTGGATAACCCGGAGAGTA 58.706 50.000 0.73 0.00 37.93 2.59
6364 6888 1.067212 CGTCTTGGATAACCCGGAGAG 59.933 57.143 0.73 0.00 37.93 3.20
6365 6889 1.108776 CGTCTTGGATAACCCGGAGA 58.891 55.000 0.73 0.00 37.93 3.71
6406 6948 1.667154 CTCATTGGCCGACTCTCCGA 61.667 60.000 0.00 0.00 0.00 4.55
6407 6949 1.227089 CTCATTGGCCGACTCTCCG 60.227 63.158 0.00 0.00 0.00 4.63
6409 6951 1.522580 GGCTCATTGGCCGACTCTC 60.523 63.158 0.00 0.00 42.82 3.20
6410 6952 2.586792 GGCTCATTGGCCGACTCT 59.413 61.111 0.00 0.00 42.82 3.24
6439 6994 2.124570 GGATGCGTGGATGGCTGT 60.125 61.111 0.00 0.00 0.00 4.40
6443 6998 4.552365 AGGCGGATGCGTGGATGG 62.552 66.667 8.84 0.00 44.10 3.51
6457 7012 3.804193 CGAGCGCAAAAGGGAGGC 61.804 66.667 11.47 0.00 0.00 4.70
6461 7016 3.011760 GACGACGAGCGCAAAAGGG 62.012 63.158 11.47 0.00 46.04 3.95
6485 7040 3.414700 CAAGCGCAGGACACGGAC 61.415 66.667 11.47 0.00 0.00 4.79
6497 7052 2.743752 CGGGAGATGCACACAAGCG 61.744 63.158 0.00 0.00 37.31 4.68
6526 7081 1.257936 CACGAAACGAACTGGTGTGAG 59.742 52.381 0.00 0.00 0.00 3.51
6527 7082 1.282817 CACGAAACGAACTGGTGTGA 58.717 50.000 0.00 0.00 0.00 3.58
6528 7083 0.303493 CCACGAAACGAACTGGTGTG 59.697 55.000 0.00 0.00 0.00 3.82
6529 7084 1.433837 GCCACGAAACGAACTGGTGT 61.434 55.000 0.00 0.00 0.00 4.16
6530 7085 1.278637 GCCACGAAACGAACTGGTG 59.721 57.895 0.00 0.00 0.00 4.17
6531 7086 1.890510 GGCCACGAAACGAACTGGT 60.891 57.895 0.00 0.00 0.00 4.00
6603 7158 3.724374 CGGCAGACGGGATAAAGATAAA 58.276 45.455 0.00 0.00 39.42 1.40
6645 7200 1.446272 CGTCGGAGGCAAAGGAGAC 60.446 63.158 0.00 0.00 0.00 3.36
6651 7206 0.250124 ATTGTCACGTCGGAGGCAAA 60.250 50.000 10.31 0.00 0.00 3.68
6722 7282 3.072038 TGGCAGGTGATGAATGGATAGAG 59.928 47.826 0.00 0.00 0.00 2.43
6725 7285 3.499021 CCATGGCAGGTGATGAATGGATA 60.499 47.826 0.00 0.00 42.88 2.59
6761 7321 2.774439 ACGTGGATGTGAGTTTTTGC 57.226 45.000 0.00 0.00 0.00 3.68
6778 7344 0.986992 CGCTAGGTGGTTTACGAACG 59.013 55.000 0.00 0.00 36.61 3.95
6782 7348 0.168788 TCGTCGCTAGGTGGTTTACG 59.831 55.000 0.00 0.00 0.00 3.18
6805 7371 0.391263 TCGACTCGCTCTAGTGCTCA 60.391 55.000 14.40 0.85 0.00 4.26
6842 7408 1.463214 TTCAAGTGAGGGAGGGGCA 60.463 57.895 0.00 0.00 0.00 5.36
6892 7458 1.798813 GGTCTTCGCACGATGACTTTT 59.201 47.619 27.41 0.00 44.03 2.27
6893 7459 1.270094 TGGTCTTCGCACGATGACTTT 60.270 47.619 27.41 0.00 44.03 2.66
6906 7472 1.218316 CTAGCCCCGTGTGGTCTTC 59.782 63.158 0.00 0.00 0.00 2.87
6945 7511 7.830099 TGATCTATACTTCTCTTCATCAGCA 57.170 36.000 0.00 0.00 0.00 4.41
6976 7542 5.647589 TCATTCGTGTGTCTATAGGTTGTC 58.352 41.667 0.00 0.00 0.00 3.18
7000 7566 5.940470 ACTTAGATCCAATCTTTGTGTGTCC 59.060 40.000 0.00 0.00 40.76 4.02
7034 7600 3.427503 GGATGCGATCGGTGATTGTTTTT 60.428 43.478 18.30 0.00 0.00 1.94
7037 7603 1.299541 GGATGCGATCGGTGATTGTT 58.700 50.000 18.30 0.00 0.00 2.83
7158 7727 3.701604 GAAGACGAGGCGATGGCGT 62.702 63.158 0.00 0.00 41.24 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.