Multiple sequence alignment - TraesCS6A01G331500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G331500 chr6A 100.000 4994 0 0 1 4994 563562993 563558000 0.000000e+00 9223.0
1 TraesCS6A01G331500 chr6D 91.037 3124 153 50 1560 4629 420740155 420737105 0.000000e+00 4100.0
2 TraesCS6A01G331500 chr6D 87.067 1415 91 36 2 1378 420741493 420740133 0.000000e+00 1515.0
3 TraesCS6A01G331500 chr6D 84.138 145 13 6 4839 4981 420736761 420736625 1.130000e-26 132.0
4 TraesCS6A01G331500 chr6B 90.632 1868 113 32 2775 4603 633905631 633903787 0.000000e+00 2423.0
5 TraesCS6A01G331500 chr6B 94.391 1034 40 7 1778 2798 633906827 633905799 0.000000e+00 1572.0
6 TraesCS6A01G331500 chr6B 84.608 994 64 31 425 1378 633908009 633907065 0.000000e+00 905.0
7 TraesCS6A01G331500 chr6B 90.283 247 10 4 1560 1792 633907088 633906842 1.350000e-80 311.0
8 TraesCS6A01G331500 chr6B 80.000 175 11 10 4839 4992 633903561 633903390 1.900000e-19 108.0
9 TraesCS6A01G331500 chr4B 98.438 192 2 1 1381 1572 455621631 455621441 2.230000e-88 337.0
10 TraesCS6A01G331500 chr4B 94.000 50 0 3 2808 2856 2431935 2431888 6.930000e-09 73.1
11 TraesCS6A01G331500 chr7A 97.938 194 3 1 1375 1568 84761187 84760995 8.010000e-88 335.0
12 TraesCS6A01G331500 chr7A 93.878 49 1 2 2807 2854 213151308 213151355 6.930000e-09 73.1
13 TraesCS6A01G331500 chr4D 96.552 203 6 1 1381 1583 478512368 478512167 8.010000e-88 335.0
14 TraesCS6A01G331500 chr5B 97.449 196 4 1 1380 1575 214934736 214934930 2.880000e-87 333.0
15 TraesCS6A01G331500 chr1A 96.117 206 5 3 1381 1585 583789316 583789113 2.880000e-87 333.0
16 TraesCS6A01G331500 chr1A 93.878 49 1 2 2804 2851 181820029 181820076 6.930000e-09 73.1
17 TraesCS6A01G331500 chr1A 95.556 45 0 2 2807 2850 459099415 459099458 2.490000e-08 71.3
18 TraesCS6A01G331500 chr5A 96.500 200 7 0 1368 1567 13889417 13889616 1.040000e-86 331.0
19 TraesCS6A01G331500 chr3B 96.059 203 6 2 1372 1573 729209731 729209932 3.730000e-86 329.0
20 TraesCS6A01G331500 chr3B 94.000 50 1 2 2808 2856 189918593 189918545 1.930000e-09 75.0
21 TraesCS6A01G331500 chr3A 97.872 188 4 0 1380 1567 402276679 402276866 4.820000e-85 326.0
22 TraesCS6A01G331500 chr4A 94.037 218 6 4 1351 1561 31621288 31621071 1.730000e-84 324.0
23 TraesCS6A01G331500 chr2B 94.340 53 1 2 2800 2851 745781674 745781623 4.140000e-11 80.5
24 TraesCS6A01G331500 chr5D 92.308 52 1 3 2807 2857 482246093 482246142 2.490000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G331500 chr6A 563558000 563562993 4993 True 9223.000000 9223 100.0000 1 4994 1 chr6A.!!$R1 4993
1 TraesCS6A01G331500 chr6D 420736625 420741493 4868 True 1915.666667 4100 87.4140 2 4981 3 chr6D.!!$R1 4979
2 TraesCS6A01G331500 chr6B 633903390 633908009 4619 True 1063.800000 2423 87.9828 425 4992 5 chr6B.!!$R1 4567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
286 303 0.319641 GATTAGTAAGAGGGCGGCGG 60.320 60.0 9.78 0.00 0.00 6.13 F
1393 1477 0.111253 ACAAGTGAAGGGGAGCCTTG 59.889 55.0 0.00 0.00 38.71 3.61 F
1441 1525 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.0 0.00 0.00 0.00 2.69 F
1450 1534 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.0 0.00 0.00 35.79 3.53 F
1497 1581 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.0 0.00 0.00 0.00 4.51 F
1514 1598 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.0 23.81 13.97 37.50 3.46 F
3623 3986 0.108615 AGATCAAGAGGCCGTGAACG 60.109 55.0 10.34 0.00 34.62 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1411 1495 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.0 44.78 4.85 R
2467 2624 1.595466 CCATCTCCTTCAGCAGATGC 58.405 55.000 2.53 0.0 43.27 3.91 R
3414 3777 1.741706 TGGCTAGAACTCGAAGGTACG 59.258 52.381 0.00 0.0 0.00 3.67 R
3511 3874 5.249420 GTCTCCTTTTCCATTTAGCTCAGT 58.751 41.667 0.00 0.0 0.00 3.41 R
3624 3987 4.105217 TCTCTACCCCTAATATCACGGTCA 59.895 45.833 0.00 0.0 0.00 4.02 R
3625 3988 4.660168 TCTCTACCCCTAATATCACGGTC 58.340 47.826 0.00 0.0 0.00 4.79 R
4771 5208 0.251386 ACGACAGAGGAAGGAGCAGA 60.251 55.000 0.00 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.161609 CACAATTTAGCGGAAGACCACC 59.838 50.000 0.00 0.00 35.59 4.61
35 36 1.473434 GCGGAAGACCACCAATCTAGG 60.473 57.143 0.00 0.00 35.59 3.02
74 77 9.525409 AATATAAAAAGACATTTGAGATGCAGC 57.475 29.630 0.00 0.00 0.00 5.25
79 82 1.200716 ACATTTGAGATGCAGCGTTGG 59.799 47.619 0.16 0.00 0.00 3.77
83 86 0.745486 TGAGATGCAGCGTTGGATGG 60.745 55.000 11.65 0.00 35.28 3.51
100 103 2.531522 TGGCCGTCTGACATCATATG 57.468 50.000 8.73 0.00 0.00 1.78
110 113 6.311200 CGTCTGACATCATATGAGACACAAAA 59.689 38.462 11.78 0.00 35.18 2.44
134 137 0.899720 TGTCCGCTTTAAGGATCGGT 59.100 50.000 8.80 0.00 42.28 4.69
145 148 3.703001 AAGGATCGGTGTTGAAGATGT 57.297 42.857 0.00 0.00 0.00 3.06
164 167 0.934446 TCCTTAGCTGCTAGGAGGGA 59.066 55.000 21.48 17.67 0.00 4.20
166 169 2.119495 CCTTAGCTGCTAGGAGGGAAA 58.881 52.381 19.10 0.00 0.00 3.13
168 171 3.054361 CCTTAGCTGCTAGGAGGGAAAAA 60.054 47.826 19.10 0.00 0.00 1.94
173 176 3.875125 CTGCTAGGAGGGAAAAACTACC 58.125 50.000 2.75 0.00 0.00 3.18
201 204 3.023591 GCGAGGCCGTTGTAGCAAC 62.024 63.158 0.00 2.22 38.24 4.17
221 224 1.367102 CCCAACGGTTGCAATGCTT 59.633 52.632 15.31 0.00 0.00 3.91
226 229 2.023223 CGGTTGCAATGCTTGGTGC 61.023 57.895 6.82 0.00 41.29 5.01
231 234 1.214589 GCAATGCTTGGTGCTCAGG 59.785 57.895 0.00 0.00 43.37 3.86
239 242 4.803426 GGTGCTCAGGAGACGCGG 62.803 72.222 12.47 0.00 0.00 6.46
251 254 2.043852 ACGCGGAGATCAGGGAGT 60.044 61.111 12.47 0.00 0.00 3.85
256 259 1.459455 CGGAGATCAGGGAGTGCGAT 61.459 60.000 0.00 0.00 0.00 4.58
272 289 3.001330 GTGCGATTGGTTCTTCGGATTAG 59.999 47.826 0.00 0.00 37.99 1.73
274 291 4.142116 TGCGATTGGTTCTTCGGATTAGTA 60.142 41.667 0.00 0.00 35.93 1.82
286 303 0.319641 GATTAGTAAGAGGGCGGCGG 60.320 60.000 9.78 0.00 0.00 6.13
296 313 4.585526 GGCGGCGGATCGTCATCA 62.586 66.667 9.78 0.00 34.56 3.07
309 326 1.067283 CGTCATCAGGCAGAGTTGACT 60.067 52.381 10.60 0.00 46.17 3.41
314 331 4.516698 TCATCAGGCAGAGTTGACTTTTTC 59.483 41.667 0.00 0.00 40.86 2.29
340 357 1.407618 ACTTCAAGGCAAAACGAACCC 59.592 47.619 0.00 0.00 0.00 4.11
354 371 5.986004 AACGAACCCGATCTCAAAATATC 57.014 39.130 0.00 0.00 39.50 1.63
355 372 5.277857 ACGAACCCGATCTCAAAATATCT 57.722 39.130 0.00 0.00 39.50 1.98
359 376 7.438459 ACGAACCCGATCTCAAAATATCTTAAG 59.562 37.037 0.00 0.00 39.50 1.85
400 417 2.046314 CGGGCTAGGGTGTTGTGG 60.046 66.667 0.00 0.00 0.00 4.17
410 427 5.396436 GCTAGGGTGTTGTGGTAGATAACAT 60.396 44.000 0.00 0.00 37.91 2.71
443 460 2.026075 AGGTAGAGGTAGTTGTCTCGCT 60.026 50.000 0.00 0.00 35.34 4.93
451 468 3.546670 GGTAGTTGTCTCGCTATTCAACG 59.453 47.826 0.00 0.00 43.00 4.10
460 477 2.348362 TCGCTATTCAACGTGATGCTTG 59.652 45.455 0.00 0.00 0.00 4.01
463 480 3.242543 GCTATTCAACGTGATGCTTGAGG 60.243 47.826 0.00 0.00 0.00 3.86
481 499 5.988310 TGAGGCAGACATCATGAAAAATT 57.012 34.783 0.00 0.00 0.00 1.82
521 541 6.698359 TTTTTAGTCCATATTTTTGTGCGC 57.302 33.333 0.00 0.00 0.00 6.09
531 551 2.929531 TTTTGTGCGCTGAAGTTTCA 57.070 40.000 9.73 0.00 35.57 2.69
592 615 2.886862 TTTTACTCAACCGACCGACA 57.113 45.000 0.00 0.00 0.00 4.35
617 668 2.745884 TGATTGCGTGAAGGCCCG 60.746 61.111 0.00 0.00 0.00 6.13
618 669 2.435938 GATTGCGTGAAGGCCCGA 60.436 61.111 0.00 0.00 0.00 5.14
619 670 1.819632 GATTGCGTGAAGGCCCGAT 60.820 57.895 0.00 0.00 0.00 4.18
620 671 2.051804 GATTGCGTGAAGGCCCGATG 62.052 60.000 0.00 0.00 0.00 3.84
621 672 4.776322 TGCGTGAAGGCCCGATGG 62.776 66.667 0.00 0.00 0.00 3.51
637 688 3.802722 GATGGCTTCGATATCACAAGC 57.197 47.619 20.89 20.89 41.60 4.01
670 721 3.119531 CCTGGCGATTCAGCAAAATTACA 60.120 43.478 0.00 0.00 39.27 2.41
888 959 3.711782 CTCCCCTCCCCTCCCCTT 61.712 72.222 0.00 0.00 0.00 3.95
889 960 3.707189 TCCCCTCCCCTCCCCTTC 61.707 72.222 0.00 0.00 0.00 3.46
890 961 4.845307 CCCCTCCCCTCCCCTTCC 62.845 77.778 0.00 0.00 0.00 3.46
891 962 4.845307 CCCTCCCCTCCCCTTCCC 62.845 77.778 0.00 0.00 0.00 3.97
980 1052 1.452108 GTTCCTGCCCCGATTGGAG 60.452 63.158 0.00 0.00 37.49 3.86
1162 1234 3.054065 CCTCCTCAGGCTGTATCCTTTTT 60.054 47.826 15.27 0.00 33.25 1.94
1163 1235 3.944015 CTCCTCAGGCTGTATCCTTTTTG 59.056 47.826 15.27 0.00 33.25 2.44
1241 1322 4.340617 TGGTGATAAACTTCCATGGGAAC 58.659 43.478 13.02 0.00 36.71 3.62
1257 1338 2.749621 GGGAACTCGAGCACATTCAAAT 59.250 45.455 13.61 0.00 0.00 2.32
1279 1360 2.327568 CAAGTTTTGCGTGCATTAGGG 58.672 47.619 0.00 0.00 0.00 3.53
1286 1370 0.179018 GCGTGCATTAGGGGGATTCT 60.179 55.000 0.00 0.00 0.00 2.40
1296 1380 2.493091 AGGGGGATTCTCTTAGGGTTG 58.507 52.381 0.00 0.00 0.00 3.77
1300 1384 3.217626 GGGATTCTCTTAGGGTTGCATG 58.782 50.000 0.00 0.00 0.00 4.06
1352 1436 7.209471 TCAAATAGGTTAGTGCGAAAACAAT 57.791 32.000 0.00 0.00 0.00 2.71
1353 1437 7.653647 TCAAATAGGTTAGTGCGAAAACAATT 58.346 30.769 0.00 0.00 0.00 2.32
1385 1469 7.133891 CTTCAGTGTATTAACAAGTGAAGGG 57.866 40.000 16.75 2.67 45.15 3.95
1386 1470 5.556915 TCAGTGTATTAACAAGTGAAGGGG 58.443 41.667 0.00 0.00 37.36 4.79
1387 1471 5.308497 TCAGTGTATTAACAAGTGAAGGGGA 59.692 40.000 0.00 0.00 37.36 4.81
1388 1472 5.643777 CAGTGTATTAACAAGTGAAGGGGAG 59.356 44.000 0.00 0.00 37.36 4.30
1389 1473 4.395231 GTGTATTAACAAGTGAAGGGGAGC 59.605 45.833 0.00 0.00 37.36 4.70
1390 1474 2.579410 TTAACAAGTGAAGGGGAGCC 57.421 50.000 0.00 0.00 0.00 4.70
1391 1475 1.742308 TAACAAGTGAAGGGGAGCCT 58.258 50.000 0.00 0.00 0.00 4.58
1392 1476 0.853530 AACAAGTGAAGGGGAGCCTT 59.146 50.000 0.00 0.00 0.00 4.35
1393 1477 0.111253 ACAAGTGAAGGGGAGCCTTG 59.889 55.000 0.00 0.00 38.71 3.61
1394 1478 0.610232 CAAGTGAAGGGGAGCCTTGG 60.610 60.000 0.00 0.00 31.19 3.61
1395 1479 2.361737 GTGAAGGGGAGCCTTGGC 60.362 66.667 2.97 2.97 0.00 4.52
1396 1480 4.033776 TGAAGGGGAGCCTTGGCG 62.034 66.667 5.95 0.00 0.00 5.69
1404 1488 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
1405 1489 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
1406 1490 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
1407 1491 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
1408 1492 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
1409 1493 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
1410 1494 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
1415 1499 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
1416 1500 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
1417 1501 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
1418 1502 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
1419 1503 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
1420 1504 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
1421 1505 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
1422 1506 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
1423 1507 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
1424 1508 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
1425 1509 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
1426 1510 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
1427 1511 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
1428 1512 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
1429 1513 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
1439 1523 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
1440 1524 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
1441 1525 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
1442 1526 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
1443 1527 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
1444 1528 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
1445 1529 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
1446 1530 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
1447 1531 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
1448 1532 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
1449 1533 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
1450 1534 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
1451 1535 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
1452 1536 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
1453 1537 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
1465 1549 2.346766 TGGAAACAGCTTCTTGCAGA 57.653 45.000 0.00 0.00 45.94 4.26
1466 1550 2.653726 TGGAAACAGCTTCTTGCAGAA 58.346 42.857 0.00 0.00 45.94 3.02
1467 1551 3.023119 TGGAAACAGCTTCTTGCAGAAA 58.977 40.909 0.00 0.00 45.94 2.52
1468 1552 3.638160 TGGAAACAGCTTCTTGCAGAAAT 59.362 39.130 0.00 0.00 45.94 2.17
1469 1553 3.985925 GGAAACAGCTTCTTGCAGAAATG 59.014 43.478 0.00 0.00 45.94 2.32
1470 1554 4.500375 GGAAACAGCTTCTTGCAGAAATGT 60.500 41.667 0.00 0.00 45.94 2.71
1471 1555 5.278463 GGAAACAGCTTCTTGCAGAAATGTA 60.278 40.000 12.51 0.00 45.94 2.29
1472 1556 5.368256 AACAGCTTCTTGCAGAAATGTAG 57.632 39.130 12.51 0.00 45.94 2.74
1473 1557 3.755378 ACAGCTTCTTGCAGAAATGTAGG 59.245 43.478 11.36 0.00 45.94 3.18
1474 1558 3.128242 CAGCTTCTTGCAGAAATGTAGGG 59.872 47.826 0.00 0.00 45.94 3.53
1475 1559 3.009473 AGCTTCTTGCAGAAATGTAGGGA 59.991 43.478 0.00 0.00 45.94 4.20
1476 1560 3.758554 GCTTCTTGCAGAAATGTAGGGAA 59.241 43.478 0.00 0.00 42.31 3.97
1477 1561 4.218417 GCTTCTTGCAGAAATGTAGGGAAA 59.782 41.667 0.00 0.00 42.31 3.13
1478 1562 5.620879 GCTTCTTGCAGAAATGTAGGGAAAG 60.621 44.000 0.00 0.00 42.31 2.62
1479 1563 4.335416 TCTTGCAGAAATGTAGGGAAAGG 58.665 43.478 0.00 0.00 0.00 3.11
1480 1564 2.446435 TGCAGAAATGTAGGGAAAGGC 58.554 47.619 0.00 0.00 0.00 4.35
1481 1565 2.041620 TGCAGAAATGTAGGGAAAGGCT 59.958 45.455 0.00 0.00 0.00 4.58
1482 1566 2.424956 GCAGAAATGTAGGGAAAGGCTG 59.575 50.000 0.00 0.00 0.00 4.85
1483 1567 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
1484 1568 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
1485 1569 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
1486 1570 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
1487 1571 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
1488 1572 0.248289 GTAGGGAAAGGCTGCGTACA 59.752 55.000 0.00 0.00 36.89 2.90
1489 1573 0.978151 TAGGGAAAGGCTGCGTACAA 59.022 50.000 0.00 0.00 0.00 2.41
1490 1574 0.328258 AGGGAAAGGCTGCGTACAAT 59.672 50.000 0.00 0.00 0.00 2.71
1491 1575 1.557832 AGGGAAAGGCTGCGTACAATA 59.442 47.619 0.00 0.00 0.00 1.90
1492 1576 1.940613 GGGAAAGGCTGCGTACAATAG 59.059 52.381 0.00 0.00 0.00 1.73
1493 1577 2.419574 GGGAAAGGCTGCGTACAATAGA 60.420 50.000 0.00 0.00 0.00 1.98
1494 1578 2.608090 GGAAAGGCTGCGTACAATAGAC 59.392 50.000 0.00 0.00 0.00 2.59
1495 1579 2.311124 AAGGCTGCGTACAATAGACC 57.689 50.000 0.00 0.00 0.00 3.85
1496 1580 0.464452 AGGCTGCGTACAATAGACCC 59.536 55.000 0.00 0.00 0.00 4.46
1497 1581 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.000 0.00 0.00 0.00 4.51
1498 1582 1.406341 GGCTGCGTACAATAGACCCAA 60.406 52.381 0.00 0.00 0.00 4.12
1499 1583 2.352388 GCTGCGTACAATAGACCCAAA 58.648 47.619 0.00 0.00 0.00 3.28
1500 1584 2.351726 GCTGCGTACAATAGACCCAAAG 59.648 50.000 0.00 0.00 0.00 2.77
1501 1585 3.596214 CTGCGTACAATAGACCCAAAGT 58.404 45.455 0.00 0.00 0.00 2.66
1502 1586 3.331150 TGCGTACAATAGACCCAAAGTG 58.669 45.455 0.00 0.00 0.00 3.16
1503 1587 2.676342 GCGTACAATAGACCCAAAGTGG 59.324 50.000 0.00 0.00 37.25 4.00
1504 1588 3.867216 GCGTACAATAGACCCAAAGTGGT 60.867 47.826 0.00 0.00 42.79 4.16
1509 1593 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
1510 1594 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
1511 1595 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
1512 1596 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
1513 1597 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
1514 1598 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
1515 1599 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
1516 1600 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
1517 1601 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
1518 1602 4.257810 TGGTCGGACCCTTCCCCA 62.258 66.667 23.81 0.69 38.99 4.96
1519 1603 3.400054 GGTCGGACCCTTCCCCAG 61.400 72.222 16.55 0.00 38.99 4.45
1520 1604 2.284405 GTCGGACCCTTCCCCAGA 60.284 66.667 0.00 0.00 38.99 3.86
1521 1605 2.284405 TCGGACCCTTCCCCAGAC 60.284 66.667 0.00 0.00 38.99 3.51
1522 1606 3.400054 CGGACCCTTCCCCAGACC 61.400 72.222 0.00 0.00 38.99 3.85
1523 1607 3.015753 GGACCCTTCCCCAGACCC 61.016 72.222 0.00 0.00 35.57 4.46
1524 1608 2.125225 GACCCTTCCCCAGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
1525 1609 2.204151 ACCCTTCCCCAGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
1526 1610 3.732849 CCCTTCCCCAGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
1527 1611 4.101448 CCTTCCCCAGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
1528 1612 4.785453 CTTCCCCAGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
1549 1633 4.115279 CGGGAGCTACATGCACTG 57.885 61.111 0.00 0.00 45.94 3.66
1550 1634 1.522355 CGGGAGCTACATGCACTGG 60.522 63.158 0.00 0.00 45.94 4.00
1551 1635 1.153086 GGGAGCTACATGCACTGGG 60.153 63.158 0.00 0.00 45.94 4.45
1552 1636 1.153086 GGAGCTACATGCACTGGGG 60.153 63.158 0.00 0.00 45.94 4.96
1553 1637 1.821332 GAGCTACATGCACTGGGGC 60.821 63.158 0.00 0.00 45.94 5.80
1554 1638 2.262774 GAGCTACATGCACTGGGGCT 62.263 60.000 13.29 13.29 45.94 5.19
1555 1639 2.117156 GCTACATGCACTGGGGCTG 61.117 63.158 0.00 0.00 42.31 4.85
1556 1640 2.045045 TACATGCACTGGGGCTGC 60.045 61.111 0.00 0.00 35.03 5.25
1557 1641 3.643595 TACATGCACTGGGGCTGCC 62.644 63.158 11.05 11.05 33.36 4.85
1563 1647 2.060370 CACTGGGGCTGCCATTTTT 58.940 52.632 22.05 0.00 0.00 1.94
1684 1768 6.595716 GGCTCCATCATAGTTGATAATACACC 59.404 42.308 0.00 0.00 40.70 4.16
1757 1843 9.289303 GTGAATTATATCGCAAAACTTCACATT 57.711 29.630 0.00 0.00 40.39 2.71
1990 2117 6.212791 AGTTTACTACAGCCTAACCATTCTCA 59.787 38.462 0.00 0.00 0.00 3.27
2002 2129 7.336931 GCCTAACCATTCTCAGACTTTTATGAA 59.663 37.037 0.00 0.00 0.00 2.57
2078 2214 0.827368 GTGTTTGGTTGGCTGGGAAA 59.173 50.000 0.00 0.00 0.00 3.13
2111 2247 7.344913 AGAGTCCAAGAAGATCAAAGCATATT 58.655 34.615 0.00 0.00 0.00 1.28
2229 2365 7.390027 CAGAACTTTACTCCCCATATCCTATG 58.610 42.308 0.00 0.00 0.00 2.23
2254 2390 6.968263 TCCTGGAAACATTTGTACATTCAA 57.032 33.333 0.00 0.00 41.51 2.69
2362 2499 2.230992 TGTTGTTGTTGCAGCTCTTTGT 59.769 40.909 1.17 0.00 0.00 2.83
2363 2500 3.441922 TGTTGTTGTTGCAGCTCTTTGTA 59.558 39.130 1.17 0.00 0.00 2.41
2364 2501 4.082517 TGTTGTTGTTGCAGCTCTTTGTAA 60.083 37.500 1.17 0.00 0.00 2.41
2365 2502 4.710423 TGTTGTTGCAGCTCTTTGTAAA 57.290 36.364 1.17 0.00 0.00 2.01
2366 2503 5.261209 TGTTGTTGCAGCTCTTTGTAAAT 57.739 34.783 1.17 0.00 0.00 1.40
2367 2504 5.659463 TGTTGTTGCAGCTCTTTGTAAATT 58.341 33.333 1.17 0.00 0.00 1.82
2368 2505 6.105333 TGTTGTTGCAGCTCTTTGTAAATTT 58.895 32.000 1.17 0.00 0.00 1.82
2369 2506 6.593382 TGTTGTTGCAGCTCTTTGTAAATTTT 59.407 30.769 1.17 0.00 0.00 1.82
2370 2507 7.118971 TGTTGTTGCAGCTCTTTGTAAATTTTT 59.881 29.630 1.17 0.00 0.00 1.94
2371 2508 8.599774 GTTGTTGCAGCTCTTTGTAAATTTTTA 58.400 29.630 1.17 0.00 0.00 1.52
2372 2509 8.709386 TGTTGCAGCTCTTTGTAAATTTTTAA 57.291 26.923 1.17 0.00 0.00 1.52
2373 2510 8.816144 TGTTGCAGCTCTTTGTAAATTTTTAAG 58.184 29.630 1.17 0.00 0.00 1.85
2374 2511 8.817100 GTTGCAGCTCTTTGTAAATTTTTAAGT 58.183 29.630 0.00 0.00 0.00 2.24
2375 2512 8.940768 TGCAGCTCTTTGTAAATTTTTAAGTT 57.059 26.923 0.00 0.00 0.00 2.66
2467 2624 4.655762 TGATCTGATAAGGACTGAACGG 57.344 45.455 0.00 0.00 0.00 4.44
2598 2755 7.550181 TGGAACCTTGCCAATGATAGGTACTA 61.550 42.308 0.00 0.00 40.03 1.82
2649 2806 7.603963 TGTTAACTATATTCATGTTGCGTGT 57.396 32.000 7.22 0.00 0.00 4.49
2650 2807 7.680982 TGTTAACTATATTCATGTTGCGTGTC 58.319 34.615 7.22 0.00 0.00 3.67
2651 2808 7.547722 TGTTAACTATATTCATGTTGCGTGTCT 59.452 33.333 7.22 0.00 0.00 3.41
2791 3139 9.174166 GGGAATGTACTTGCTAAATCTTTCTTA 57.826 33.333 0.00 0.00 0.00 2.10
2796 3144 8.380099 TGTACTTGCTAAATCTTTCTTAAGGGA 58.620 33.333 1.85 0.00 32.02 4.20
2797 3145 7.929941 ACTTGCTAAATCTTTCTTAAGGGAG 57.070 36.000 1.85 1.37 32.02 4.30
2862 3214 5.510520 GGAGGGAGTAGTTCATTAGATGCTG 60.511 48.000 0.00 0.00 0.00 4.41
2941 3293 7.994425 TCAAGTTTTATTGTTCATCTGCCTA 57.006 32.000 0.00 0.00 0.00 3.93
2980 3333 3.181541 CGTTTGCATCGCCTTTTCATTTC 60.182 43.478 0.00 0.00 0.00 2.17
2993 3346 8.056571 CGCCTTTTCATTTCTACTTAGTTATCG 58.943 37.037 0.00 0.00 0.00 2.92
3293 3646 3.004106 GGATACACACGCGTCTAAGGTAT 59.996 47.826 9.86 12.69 0.00 2.73
3339 3692 8.250332 TCTTGTTGCTTTTGAAGTTATGTTCTT 58.750 29.630 0.00 0.00 0.00 2.52
3511 3874 1.134220 CCAAGGATAAGCCGTTGCCTA 60.134 52.381 0.00 0.00 43.43 3.93
3621 3984 2.457598 AGTAGATCAAGAGGCCGTGAA 58.542 47.619 10.34 0.00 34.62 3.18
3622 3985 2.166664 AGTAGATCAAGAGGCCGTGAAC 59.833 50.000 10.34 8.23 34.62 3.18
3623 3986 0.108615 AGATCAAGAGGCCGTGAACG 60.109 55.000 10.34 0.00 34.62 3.95
3624 3987 0.389948 GATCAAGAGGCCGTGAACGT 60.390 55.000 10.34 0.00 34.62 3.99
3625 3988 0.670546 ATCAAGAGGCCGTGAACGTG 60.671 55.000 10.34 4.31 34.62 4.49
3626 3989 1.300620 CAAGAGGCCGTGAACGTGA 60.301 57.895 0.00 0.00 37.74 4.35
3716 4079 5.857517 CGAGAGACAAAAGTTCAGGTACTAC 59.142 44.000 0.00 0.00 36.02 2.73
3773 4136 8.573035 TGAGATGTAATGCGTTGTACTCATATA 58.427 33.333 0.08 0.00 0.00 0.86
3774 4137 9.574458 GAGATGTAATGCGTTGTACTCATATAT 57.426 33.333 0.08 0.00 0.00 0.86
3880 4243 2.698855 ACCTCACTTCATCAATCCCG 57.301 50.000 0.00 0.00 0.00 5.14
3883 4246 3.118738 ACCTCACTTCATCAATCCCGTAC 60.119 47.826 0.00 0.00 0.00 3.67
3886 4249 3.767131 TCACTTCATCAATCCCGTACTGA 59.233 43.478 0.00 0.00 0.00 3.41
3887 4250 4.405680 TCACTTCATCAATCCCGTACTGAT 59.594 41.667 0.00 0.00 0.00 2.90
3888 4251 5.596772 TCACTTCATCAATCCCGTACTGATA 59.403 40.000 0.00 0.00 0.00 2.15
3902 4276 6.110707 CCGTACTGATACCCACTAACAAATT 58.889 40.000 0.00 0.00 0.00 1.82
4019 4393 1.676014 CGGAGCTTCCCTGTTGTAAGG 60.676 57.143 0.00 0.00 37.05 2.69
4026 4400 2.626785 TCCCTGTTGTAAGGACATCCA 58.373 47.619 0.00 0.00 40.02 3.41
4091 4465 5.339008 TGGTATCATCTGGTGTTACACTC 57.661 43.478 15.44 6.27 35.58 3.51
4120 4494 4.202243 GCCATTAGCAAAATCAGGCCAATA 60.202 41.667 5.01 0.00 42.97 1.90
4184 4558 9.895138 ATAATTTACCTGTAGTTTATCCGTTGT 57.105 29.630 0.00 0.00 0.00 3.32
4185 4559 8.625786 AATTTACCTGTAGTTTATCCGTTGTT 57.374 30.769 0.00 0.00 0.00 2.83
4186 4560 7.656707 TTTACCTGTAGTTTATCCGTTGTTC 57.343 36.000 0.00 0.00 0.00 3.18
4187 4561 4.572909 ACCTGTAGTTTATCCGTTGTTCC 58.427 43.478 0.00 0.00 0.00 3.62
4188 4562 3.937079 CCTGTAGTTTATCCGTTGTTCCC 59.063 47.826 0.00 0.00 0.00 3.97
4189 4563 4.323257 CCTGTAGTTTATCCGTTGTTCCCT 60.323 45.833 0.00 0.00 0.00 4.20
4192 4566 3.939066 AGTTTATCCGTTGTTCCCTCAG 58.061 45.455 0.00 0.00 0.00 3.35
4215 4613 0.893270 ATGCGTGCCTGCCACTTTTA 60.893 50.000 0.00 0.00 42.42 1.52
4236 4634 1.147817 ACATGAAGGGCTTTTGGGAGT 59.852 47.619 0.00 0.00 0.00 3.85
4245 4643 2.893489 GGCTTTTGGGAGTGAGTGATTT 59.107 45.455 0.00 0.00 0.00 2.17
4262 4660 3.380004 TGATTTTCACGGCATGATAACCC 59.620 43.478 0.00 0.00 37.11 4.11
4278 4676 2.268076 CCCGGTTTCTTGTGGCCTG 61.268 63.158 3.32 0.00 0.00 4.85
4299 4697 0.603065 GGGGCGCATGAAGAACTTTT 59.397 50.000 10.83 0.00 0.00 2.27
4379 4777 7.402054 TGTTTCTGGACTAATGTGGATATGTT 58.598 34.615 0.00 0.00 0.00 2.71
4382 4780 6.957631 TCTGGACTAATGTGGATATGTTGTT 58.042 36.000 0.00 0.00 0.00 2.83
4383 4781 8.084985 TCTGGACTAATGTGGATATGTTGTTA 57.915 34.615 0.00 0.00 0.00 2.41
4408 4808 5.069318 TCTTGTGTTTGAAGATGCCATGTA 58.931 37.500 0.00 0.00 0.00 2.29
4442 4848 7.321153 TCTTAGCTAATTTATACTCCATCCGC 58.679 38.462 6.64 0.00 0.00 5.54
4455 4861 0.944386 CATCCGCCCCGAATTACTTG 59.056 55.000 0.00 0.00 0.00 3.16
4456 4862 0.544697 ATCCGCCCCGAATTACTTGT 59.455 50.000 0.00 0.00 0.00 3.16
4457 4863 0.108041 TCCGCCCCGAATTACTTGTC 60.108 55.000 0.00 0.00 0.00 3.18
4458 4864 0.107848 CCGCCCCGAATTACTTGTCT 60.108 55.000 0.00 0.00 0.00 3.41
4459 4865 1.677820 CCGCCCCGAATTACTTGTCTT 60.678 52.381 0.00 0.00 0.00 3.01
4461 4867 2.864343 CGCCCCGAATTACTTGTCTTAG 59.136 50.000 0.00 0.00 0.00 2.18
4462 4868 3.429822 CGCCCCGAATTACTTGTCTTAGA 60.430 47.826 0.00 0.00 0.00 2.10
4463 4869 4.120589 GCCCCGAATTACTTGTCTTAGAG 58.879 47.826 0.00 0.00 0.00 2.43
4464 4870 4.382793 GCCCCGAATTACTTGTCTTAGAGT 60.383 45.833 0.00 0.00 0.00 3.24
4480 4886 8.731605 TGTCTTAGAGTAGTCTTGATACAAGTG 58.268 37.037 5.16 0.00 33.84 3.16
4492 4898 2.483014 TACAAGTGATTTGGGACGGG 57.517 50.000 0.00 0.00 41.25 5.28
4571 4977 5.055812 ACACATTTGCTGTTATGGTTTTGG 58.944 37.500 0.00 0.00 35.29 3.28
4576 4982 2.952978 TGCTGTTATGGTTTTGGAACGT 59.047 40.909 0.00 0.00 36.61 3.99
4583 4989 1.299850 GTTTTGGAACGTGGCTGCC 60.300 57.895 12.87 12.87 0.00 4.85
4603 5009 6.389830 TGCCCATGATCATAATTGTTGTAC 57.610 37.500 8.15 0.00 0.00 2.90
4604 5010 5.008514 TGCCCATGATCATAATTGTTGTACG 59.991 40.000 8.15 0.00 0.00 3.67
4634 5040 7.646314 AGTAGATTGCATGAGAATTATGTTGC 58.354 34.615 0.00 0.00 0.00 4.17
4635 5041 5.839621 AGATTGCATGAGAATTATGTTGCC 58.160 37.500 0.00 0.00 0.00 4.52
4637 5043 5.402997 TTGCATGAGAATTATGTTGCCAA 57.597 34.783 0.00 0.00 0.00 4.52
4639 5045 3.800506 GCATGAGAATTATGTTGCCAAGC 59.199 43.478 0.00 0.00 0.00 4.01
4640 5046 3.763097 TGAGAATTATGTTGCCAAGCG 57.237 42.857 0.00 0.00 0.00 4.68
4641 5047 3.081061 TGAGAATTATGTTGCCAAGCGT 58.919 40.909 0.00 0.00 0.00 5.07
4642 5048 3.505680 TGAGAATTATGTTGCCAAGCGTT 59.494 39.130 0.00 0.00 0.00 4.84
4643 5049 4.022416 TGAGAATTATGTTGCCAAGCGTTT 60.022 37.500 0.00 0.00 0.00 3.60
4644 5050 4.236935 AGAATTATGTTGCCAAGCGTTTG 58.763 39.130 4.84 4.84 0.00 2.93
4645 5051 3.932545 ATTATGTTGCCAAGCGTTTGA 57.067 38.095 14.10 0.00 36.36 2.69
4646 5052 3.717400 TTATGTTGCCAAGCGTTTGAA 57.283 38.095 14.10 0.00 36.36 2.69
4647 5053 2.818130 ATGTTGCCAAGCGTTTGAAT 57.182 40.000 14.10 0.00 36.36 2.57
4648 5054 2.593346 TGTTGCCAAGCGTTTGAATT 57.407 40.000 14.10 0.00 36.36 2.17
4649 5055 3.717400 TGTTGCCAAGCGTTTGAATTA 57.283 38.095 14.10 0.00 36.36 1.40
4650 5056 4.046938 TGTTGCCAAGCGTTTGAATTAA 57.953 36.364 14.10 0.45 36.36 1.40
4651 5057 4.047822 TGTTGCCAAGCGTTTGAATTAAG 58.952 39.130 14.10 0.00 36.36 1.85
4655 5061 3.673338 GCCAAGCGTTTGAATTAAGTTCC 59.327 43.478 14.10 0.00 36.36 3.62
4661 5067 5.977129 AGCGTTTGAATTAAGTTCCAAGTTG 59.023 36.000 0.00 0.00 35.91 3.16
4693 5099 2.349297 CGTAACCGCAAGAAGAGAGT 57.651 50.000 0.00 0.00 43.02 3.24
4694 5100 2.251893 CGTAACCGCAAGAAGAGAGTC 58.748 52.381 0.00 0.00 43.02 3.36
4695 5101 2.608268 GTAACCGCAAGAAGAGAGTCC 58.392 52.381 0.00 0.00 43.02 3.85
4697 5103 1.270907 ACCGCAAGAAGAGAGTCCAT 58.729 50.000 0.00 0.00 43.02 3.41
4698 5104 1.625818 ACCGCAAGAAGAGAGTCCATT 59.374 47.619 0.00 0.00 43.02 3.16
4699 5105 2.039084 ACCGCAAGAAGAGAGTCCATTT 59.961 45.455 0.00 0.00 43.02 2.32
4701 5107 4.253685 CCGCAAGAAGAGAGTCCATTTTA 58.746 43.478 0.00 0.00 43.02 1.52
4702 5108 4.331168 CCGCAAGAAGAGAGTCCATTTTAG 59.669 45.833 0.00 0.00 43.02 1.85
4703 5109 5.171476 CGCAAGAAGAGAGTCCATTTTAGA 58.829 41.667 0.00 0.00 43.02 2.10
4704 5110 5.639506 CGCAAGAAGAGAGTCCATTTTAGAA 59.360 40.000 0.00 0.00 43.02 2.10
4705 5111 6.147821 CGCAAGAAGAGAGTCCATTTTAGAAA 59.852 38.462 0.00 0.00 43.02 2.52
4707 5113 7.805542 GCAAGAAGAGAGTCCATTTTAGAAAAC 59.194 37.037 0.00 0.00 0.00 2.43
4709 5115 7.217906 AGAAGAGAGTCCATTTTAGAAAACGT 58.782 34.615 0.00 0.00 0.00 3.99
4710 5116 7.715686 AGAAGAGAGTCCATTTTAGAAAACGTT 59.284 33.333 0.00 0.00 0.00 3.99
4712 5118 7.639945 AGAGAGTCCATTTTAGAAAACGTTTG 58.360 34.615 15.46 0.00 0.00 2.93
4714 5120 7.992008 AGAGTCCATTTTAGAAAACGTTTGAA 58.008 30.769 15.46 6.73 0.00 2.69
4715 5121 8.630037 AGAGTCCATTTTAGAAAACGTTTGAAT 58.370 29.630 15.46 6.23 0.00 2.57
4716 5122 9.244799 GAGTCCATTTTAGAAAACGTTTGAATT 57.755 29.630 15.46 0.00 0.00 2.17
4727 5164 5.365403 AACGTTTGAATTCGCCTTGATAA 57.635 34.783 0.00 0.00 0.00 1.75
4733 5170 4.505808 TGAATTCGCCTTGATAACCGTTA 58.494 39.130 0.04 0.00 0.00 3.18
4734 5171 4.569162 TGAATTCGCCTTGATAACCGTTAG 59.431 41.667 0.04 0.00 0.00 2.34
4735 5172 3.872511 TTCGCCTTGATAACCGTTAGA 57.127 42.857 0.00 0.00 0.00 2.10
4737 5174 3.713288 TCGCCTTGATAACCGTTAGATG 58.287 45.455 0.00 0.00 0.00 2.90
4738 5175 2.221055 CGCCTTGATAACCGTTAGATGC 59.779 50.000 0.00 0.00 0.00 3.91
4739 5176 2.221055 GCCTTGATAACCGTTAGATGCG 59.779 50.000 0.00 0.00 0.00 4.73
4740 5177 2.221055 CCTTGATAACCGTTAGATGCGC 59.779 50.000 0.00 0.00 0.00 6.09
4741 5178 1.483316 TGATAACCGTTAGATGCGCG 58.517 50.000 0.00 0.00 0.00 6.86
4771 5208 1.494960 GATCCTTCCTCTCTGCCAGT 58.505 55.000 0.00 0.00 0.00 4.00
4783 5221 1.537397 TGCCAGTCTGCTCCTTCCT 60.537 57.895 0.00 0.00 0.00 3.36
4784 5222 1.220477 GCCAGTCTGCTCCTTCCTC 59.780 63.158 0.00 0.00 0.00 3.71
4786 5224 0.536260 CCAGTCTGCTCCTTCCTCTG 59.464 60.000 0.00 0.00 0.00 3.35
4796 5234 1.507174 CTTCCTCTGTCGTCGTCCC 59.493 63.158 0.00 0.00 0.00 4.46
4799 5237 4.477975 CTCTGTCGTCGTCCCCGC 62.478 72.222 0.00 0.00 0.00 6.13
4823 5380 1.308069 GCATGGTGAATCACGCAGGT 61.308 55.000 7.35 0.00 34.83 4.00
4853 5462 1.284715 GCGGGTGTTGTAAGTTGGC 59.715 57.895 0.00 0.00 0.00 4.52
4865 5474 5.392767 TGTAAGTTGGCAGTTGTTGAAAA 57.607 34.783 0.00 0.00 0.00 2.29
4910 5519 6.039941 AGTTCACATTCACAAACGGGAATAAA 59.960 34.615 0.00 0.00 32.71 1.40
4911 5520 6.007936 TCACATTCACAAACGGGAATAAAG 57.992 37.500 0.00 0.00 32.71 1.85
4921 5547 3.606687 ACGGGAATAAAGAAGCGTGATT 58.393 40.909 0.00 0.00 0.00 2.57
4922 5548 3.374058 ACGGGAATAAAGAAGCGTGATTG 59.626 43.478 0.00 0.00 0.00 2.67
4928 5554 1.021390 AAGAAGCGTGATTGCCCTCG 61.021 55.000 0.00 0.00 34.65 4.63
4935 5561 2.203126 GATTGCCCTCGAGCCCTG 60.203 66.667 6.99 0.00 0.00 4.45
4949 5579 1.133976 AGCCCTGATTCCTCAAATCCG 60.134 52.381 0.00 0.00 42.74 4.18
4966 5596 2.708255 GTCGTCTCCTACTCGGCG 59.292 66.667 0.00 0.00 0.00 6.46
4970 5600 2.829003 TCTCCTACTCGGCGGCTG 60.829 66.667 7.21 1.35 0.00 4.85
4971 5601 4.577246 CTCCTACTCGGCGGCTGC 62.577 72.222 9.72 9.72 41.71 5.25
4992 5622 4.218578 ATCTCGCCGCCAGCTCTG 62.219 66.667 0.00 0.00 40.39 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.392595 GGTCTTCCGCTAAATTGTGCATTTA 60.393 40.000 0.00 0.00 36.43 1.40
8 9 2.432444 TGGTGGTCTTCCGCTAAATTG 58.568 47.619 0.00 0.00 43.20 2.32
16 17 1.831736 ACCTAGATTGGTGGTCTTCCG 59.168 52.381 0.00 0.00 39.17 4.30
52 55 5.048782 ACGCTGCATCTCAAATGTCTTTTTA 60.049 36.000 0.00 0.00 0.00 1.52
56 59 2.430465 ACGCTGCATCTCAAATGTCTT 58.570 42.857 0.00 0.00 0.00 3.01
71 74 3.499737 GACGGCCATCCAACGCTG 61.500 66.667 2.24 0.00 37.39 5.18
74 77 2.100631 GTCAGACGGCCATCCAACG 61.101 63.158 2.24 0.00 0.00 4.10
79 82 2.820059 TATGATGTCAGACGGCCATC 57.180 50.000 2.24 0.00 36.40 3.51
83 86 3.243535 TGTCTCATATGATGTCAGACGGC 60.244 47.826 5.72 0.00 0.00 5.68
110 113 2.922740 TCCTTAAAGCGGACACACTT 57.077 45.000 0.00 0.00 0.00 3.16
114 117 1.287425 CCGATCCTTAAAGCGGACAC 58.713 55.000 0.00 0.00 46.29 3.67
134 137 3.008375 AGCAGCTAAGGACATCTTCAACA 59.992 43.478 0.00 0.00 36.93 3.33
145 148 0.934446 TCCCTCCTAGCAGCTAAGGA 59.066 55.000 18.59 17.05 0.00 3.36
164 167 2.094338 CGCCCTCGTCTAGGTAGTTTTT 60.094 50.000 0.00 0.00 44.90 1.94
166 169 1.101331 CGCCCTCGTCTAGGTAGTTT 58.899 55.000 0.00 0.00 44.90 2.66
168 171 0.179051 CTCGCCCTCGTCTAGGTAGT 60.179 60.000 0.00 0.00 44.90 2.73
173 176 3.597728 GGCCTCGCCCTCGTCTAG 61.598 72.222 0.00 0.00 44.06 2.43
191 194 1.082366 CGTTGGGCGTTGCTACAAC 60.082 57.895 15.01 15.01 40.22 3.32
201 204 2.430582 CATTGCAACCGTTGGGCG 60.431 61.111 13.12 0.00 40.95 6.13
221 224 4.056125 CGCGTCTCCTGAGCACCA 62.056 66.667 0.00 0.00 0.00 4.17
226 229 1.098129 TGATCTCCGCGTCTCCTGAG 61.098 60.000 4.92 3.11 0.00 3.35
231 234 1.791103 CTCCCTGATCTCCGCGTCTC 61.791 65.000 4.92 0.00 0.00 3.36
239 242 1.539929 CCAATCGCACTCCCTGATCTC 60.540 57.143 0.00 0.00 0.00 2.75
251 254 2.107950 AATCCGAAGAACCAATCGCA 57.892 45.000 0.00 0.00 37.73 5.10
256 259 5.105064 CCCTCTTACTAATCCGAAGAACCAA 60.105 44.000 0.00 0.00 0.00 3.67
272 289 2.029221 GATCCGCCGCCCTCTTAC 59.971 66.667 0.00 0.00 0.00 2.34
286 303 2.159184 TCAACTCTGCCTGATGACGATC 60.159 50.000 0.00 0.00 0.00 3.69
296 313 3.584733 AGGAAAAAGTCAACTCTGCCT 57.415 42.857 0.00 0.00 0.00 4.75
309 326 7.148557 CGTTTTGCCTTGAAGTTTTAGGAAAAA 60.149 33.333 14.61 14.61 41.91 1.94
314 331 4.927422 TCGTTTTGCCTTGAAGTTTTAGG 58.073 39.130 0.00 0.95 0.00 2.69
354 371 8.388853 GCGTAATAGAAAAGGGTCTTTCTTAAG 58.611 37.037 4.09 0.00 41.81 1.85
355 372 7.335171 GGCGTAATAGAAAAGGGTCTTTCTTAA 59.665 37.037 4.09 0.00 41.81 1.85
359 376 5.183969 AGGCGTAATAGAAAAGGGTCTTTC 58.816 41.667 0.00 0.00 35.85 2.62
410 427 6.978261 ACTACCTCTACCTATAAAGTGGTCA 58.022 40.000 0.00 0.00 39.60 4.02
418 435 5.762218 GCGAGACAACTACCTCTACCTATAA 59.238 44.000 0.00 0.00 0.00 0.98
419 436 5.071519 AGCGAGACAACTACCTCTACCTATA 59.928 44.000 0.00 0.00 0.00 1.31
420 437 4.136051 GCGAGACAACTACCTCTACCTAT 58.864 47.826 0.00 0.00 0.00 2.57
443 460 2.677836 GCCTCAAGCATCACGTTGAATA 59.322 45.455 0.00 0.00 42.97 1.75
460 477 5.717119 ACAATTTTTCATGATGTCTGCCTC 58.283 37.500 0.00 0.00 0.00 4.70
463 480 7.591006 AATGACAATTTTTCATGATGTCTGC 57.409 32.000 21.14 3.34 40.70 4.26
504 522 3.485947 TCAGCGCACAAAAATATGGAC 57.514 42.857 11.47 0.00 0.00 4.02
576 599 1.250328 ACATGTCGGTCGGTTGAGTA 58.750 50.000 0.00 0.00 0.00 2.59
592 615 1.660607 CTTCACGCAATCACGCTACAT 59.339 47.619 0.00 0.00 36.19 2.29
617 668 3.802722 GCTTGTGATATCGAAGCCATC 57.197 47.619 20.93 0.00 36.84 3.51
621 672 0.861837 CGGGCTTGTGATATCGAAGC 59.138 55.000 22.43 22.43 41.18 3.86
622 673 2.509052 TCGGGCTTGTGATATCGAAG 57.491 50.000 9.09 9.09 0.00 3.79
623 674 2.167693 ACTTCGGGCTTGTGATATCGAA 59.832 45.455 0.00 0.00 35.72 3.71
624 675 1.754803 ACTTCGGGCTTGTGATATCGA 59.245 47.619 0.00 0.00 0.00 3.59
625 676 2.225068 ACTTCGGGCTTGTGATATCG 57.775 50.000 0.00 0.00 0.00 2.92
626 677 4.246458 GGATACTTCGGGCTTGTGATATC 58.754 47.826 0.00 0.00 0.00 1.63
627 678 3.008049 GGGATACTTCGGGCTTGTGATAT 59.992 47.826 0.00 0.00 0.00 1.63
628 679 2.367567 GGGATACTTCGGGCTTGTGATA 59.632 50.000 0.00 0.00 0.00 2.15
629 680 1.141053 GGGATACTTCGGGCTTGTGAT 59.859 52.381 0.00 0.00 0.00 3.06
630 681 0.539986 GGGATACTTCGGGCTTGTGA 59.460 55.000 0.00 0.00 0.00 3.58
631 682 0.541863 AGGGATACTTCGGGCTTGTG 59.458 55.000 0.00 0.00 0.00 3.33
632 683 0.541863 CAGGGATACTTCGGGCTTGT 59.458 55.000 0.00 0.00 0.00 3.16
633 684 0.179045 CCAGGGATACTTCGGGCTTG 60.179 60.000 0.00 0.00 0.00 4.01
634 685 1.984288 GCCAGGGATACTTCGGGCTT 61.984 60.000 0.00 0.00 38.37 4.35
635 686 2.444256 GCCAGGGATACTTCGGGCT 61.444 63.158 0.00 0.00 38.37 5.19
636 687 2.111251 GCCAGGGATACTTCGGGC 59.889 66.667 0.00 0.00 0.00 6.13
637 688 1.472662 ATCGCCAGGGATACTTCGGG 61.473 60.000 0.00 0.00 0.00 5.14
638 689 0.393077 AATCGCCAGGGATACTTCGG 59.607 55.000 0.00 0.00 0.00 4.30
639 690 1.068588 TGAATCGCCAGGGATACTTCG 59.931 52.381 0.00 0.00 0.00 3.79
683 734 2.316586 GGAAAGGGGATGGCTGGGA 61.317 63.158 0.00 0.00 0.00 4.37
715 778 3.090532 GGAGGAGCGGGGTGGAAT 61.091 66.667 0.00 0.00 0.00 3.01
874 945 4.845307 GGGAAGGGGAGGGGAGGG 62.845 77.778 0.00 0.00 0.00 4.30
1062 1134 1.367840 GTCGATCCCATCCTTCCGG 59.632 63.158 0.00 0.00 0.00 5.14
1241 1322 2.905959 TGCATTTGAATGTGCTCGAG 57.094 45.000 8.45 8.45 41.78 4.04
1279 1360 3.217626 CATGCAACCCTAAGAGAATCCC 58.782 50.000 0.00 0.00 33.66 3.85
1286 1370 4.016444 GTTTCATCCATGCAACCCTAAGA 58.984 43.478 0.00 0.00 29.53 2.10
1296 1380 1.814394 TGAGCTGTGTTTCATCCATGC 59.186 47.619 0.00 0.00 0.00 4.06
1300 1384 4.919754 GTCAAAATGAGCTGTGTTTCATCC 59.080 41.667 0.00 0.00 33.09 3.51
1360 1444 6.710744 CCCTTCACTTGTTAATACACTGAAGT 59.289 38.462 16.24 0.00 41.93 3.01
1361 1445 6.149474 CCCCTTCACTTGTTAATACACTGAAG 59.851 42.308 13.22 13.22 42.47 3.02
1362 1446 6.001460 CCCCTTCACTTGTTAATACACTGAA 58.999 40.000 0.00 0.00 33.38 3.02
1363 1447 5.308497 TCCCCTTCACTTGTTAATACACTGA 59.692 40.000 0.00 0.00 32.98 3.41
1364 1448 5.556915 TCCCCTTCACTTGTTAATACACTG 58.443 41.667 0.00 0.00 32.98 3.66
1365 1449 5.803470 GCTCCCCTTCACTTGTTAATACACT 60.803 44.000 0.00 0.00 32.98 3.55
1366 1450 4.395231 GCTCCCCTTCACTTGTTAATACAC 59.605 45.833 0.00 0.00 32.98 2.90
1367 1451 4.566907 GGCTCCCCTTCACTTGTTAATACA 60.567 45.833 0.00 0.00 0.00 2.29
1368 1452 3.945921 GGCTCCCCTTCACTTGTTAATAC 59.054 47.826 0.00 0.00 0.00 1.89
1369 1453 3.850173 AGGCTCCCCTTCACTTGTTAATA 59.150 43.478 0.00 0.00 38.74 0.98
1370 1454 2.649816 AGGCTCCCCTTCACTTGTTAAT 59.350 45.455 0.00 0.00 38.74 1.40
1371 1455 2.062636 AGGCTCCCCTTCACTTGTTAA 58.937 47.619 0.00 0.00 38.74 2.01
1372 1456 1.742308 AGGCTCCCCTTCACTTGTTA 58.258 50.000 0.00 0.00 38.74 2.41
1373 1457 2.556849 AGGCTCCCCTTCACTTGTT 58.443 52.632 0.00 0.00 38.74 2.83
1374 1458 4.339335 AGGCTCCCCTTCACTTGT 57.661 55.556 0.00 0.00 38.74 3.16
1386 1470 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
1387 1471 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
1388 1472 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
1389 1473 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
1390 1474 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
1391 1475 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
1392 1476 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
1393 1477 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
1397 1481 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
1398 1482 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
1399 1483 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
1400 1484 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
1401 1485 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
1402 1486 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
1403 1487 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
1404 1488 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
1405 1489 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
1406 1490 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
1407 1491 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
1408 1492 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
1409 1493 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
1410 1494 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
1411 1495 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
1412 1496 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
1423 1507 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
1424 1508 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
1425 1509 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
1426 1510 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
1427 1511 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
1428 1512 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
1429 1513 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
1430 1514 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
1431 1515 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
1432 1516 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
1433 1517 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
1434 1518 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
1435 1519 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
1436 1520 2.576615 AGCTGTTTCCAGGACTTGAAC 58.423 47.619 0.00 0.00 39.22 3.18
1437 1521 3.117888 AGAAGCTGTTTCCAGGACTTGAA 60.118 43.478 0.32 0.00 39.22 2.69
1438 1522 2.439507 AGAAGCTGTTTCCAGGACTTGA 59.560 45.455 0.32 0.00 39.22 3.02
1439 1523 2.856222 AGAAGCTGTTTCCAGGACTTG 58.144 47.619 0.32 0.00 39.22 3.16
1440 1524 3.217626 CAAGAAGCTGTTTCCAGGACTT 58.782 45.455 0.32 0.00 39.22 3.01
1441 1525 2.856222 CAAGAAGCTGTTTCCAGGACT 58.144 47.619 0.32 0.00 39.22 3.85
1442 1526 1.268079 GCAAGAAGCTGTTTCCAGGAC 59.732 52.381 0.32 0.00 39.22 3.85
1443 1527 1.133823 TGCAAGAAGCTGTTTCCAGGA 60.134 47.619 0.32 0.00 45.94 3.86
1444 1528 1.268899 CTGCAAGAAGCTGTTTCCAGG 59.731 52.381 0.32 0.00 45.94 4.45
1445 1529 2.224606 TCTGCAAGAAGCTGTTTCCAG 58.775 47.619 0.32 2.33 42.31 3.86
1446 1530 2.346766 TCTGCAAGAAGCTGTTTCCA 57.653 45.000 0.32 0.00 42.31 3.53
1457 1541 4.335416 CCTTTCCCTACATTTCTGCAAGA 58.665 43.478 0.00 0.00 44.68 3.02
1458 1542 3.119352 GCCTTTCCCTACATTTCTGCAAG 60.119 47.826 0.00 0.00 0.00 4.01
1459 1543 2.825532 GCCTTTCCCTACATTTCTGCAA 59.174 45.455 0.00 0.00 0.00 4.08
1460 1544 2.041620 AGCCTTTCCCTACATTTCTGCA 59.958 45.455 0.00 0.00 0.00 4.41
1461 1545 2.424956 CAGCCTTTCCCTACATTTCTGC 59.575 50.000 0.00 0.00 0.00 4.26
1462 1546 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
1463 1547 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
1464 1548 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
1465 1549 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
1466 1550 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
1467 1551 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
1468 1552 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
1469 1553 0.248289 TGTACGCAGCCTTTCCCTAC 59.752 55.000 0.00 0.00 0.00 3.18
1470 1554 0.978151 TTGTACGCAGCCTTTCCCTA 59.022 50.000 0.00 0.00 0.00 3.53
1471 1555 0.328258 ATTGTACGCAGCCTTTCCCT 59.672 50.000 0.00 0.00 0.00 4.20
1472 1556 1.940613 CTATTGTACGCAGCCTTTCCC 59.059 52.381 0.00 0.00 0.00 3.97
1473 1557 2.608090 GTCTATTGTACGCAGCCTTTCC 59.392 50.000 0.00 0.00 0.00 3.13
1474 1558 2.608090 GGTCTATTGTACGCAGCCTTTC 59.392 50.000 0.00 0.00 0.00 2.62
1475 1559 2.629051 GGTCTATTGTACGCAGCCTTT 58.371 47.619 0.00 0.00 0.00 3.11
1476 1560 1.134491 GGGTCTATTGTACGCAGCCTT 60.134 52.381 0.00 0.00 0.00 4.35
1477 1561 0.464452 GGGTCTATTGTACGCAGCCT 59.536 55.000 0.00 0.00 0.00 4.58
1478 1562 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85
1479 1563 2.018542 TTGGGTCTATTGTACGCAGC 57.981 50.000 0.00 0.00 40.36 5.25
1480 1564 3.370978 CACTTTGGGTCTATTGTACGCAG 59.629 47.826 0.00 0.00 40.36 5.18
1481 1565 3.331150 CACTTTGGGTCTATTGTACGCA 58.669 45.455 0.00 0.00 37.94 5.24
1482 1566 2.676342 CCACTTTGGGTCTATTGTACGC 59.324 50.000 0.00 0.00 32.67 4.42
1483 1567 3.934068 ACCACTTTGGGTCTATTGTACG 58.066 45.455 0.00 0.00 43.37 3.67
1493 1577 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
1494 1578 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
1495 1579 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
1496 1580 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
1497 1581 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
1498 1582 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
1499 1583 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
1500 1584 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
1501 1585 4.257810 TGGGGAAGGGTCCGACCA 62.258 66.667 19.43 0.00 46.04 4.02
1502 1586 3.400054 CTGGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
1503 1587 2.284405 TCTGGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
1504 1588 2.284405 GTCTGGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
1505 1589 3.400054 GGTCTGGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
1506 1590 3.015753 GGGTCTGGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
1507 1591 2.125225 AGGGTCTGGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
1508 1592 2.204151 CAGGGTCTGGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
1509 1593 3.732849 GCAGGGTCTGGGGAAGGG 61.733 72.222 0.00 0.00 31.21 3.95
1510 1594 4.101448 CGCAGGGTCTGGGGAAGG 62.101 72.222 4.35 0.00 40.11 3.46
1511 1595 4.785453 GCGCAGGGTCTGGGGAAG 62.785 72.222 0.30 0.00 43.28 3.46
1523 1607 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
1526 1610 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
1527 1611 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
1528 1612 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
1529 1613 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
1531 1615 2.176273 CAGTGCATGTAGCTCCCGC 61.176 63.158 0.00 0.00 45.94 6.13
1532 1616 1.522355 CCAGTGCATGTAGCTCCCG 60.522 63.158 0.00 0.00 45.94 5.14
1533 1617 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
1534 1618 1.153086 CCCCAGTGCATGTAGCTCC 60.153 63.158 0.00 0.00 45.94 4.70
1535 1619 1.821332 GCCCCAGTGCATGTAGCTC 60.821 63.158 0.00 0.00 45.94 4.09
1536 1620 2.273449 GCCCCAGTGCATGTAGCT 59.727 61.111 0.00 0.00 45.94 3.32
1537 1621 2.117156 CAGCCCCAGTGCATGTAGC 61.117 63.158 0.00 0.00 45.96 3.58
1538 1622 2.117156 GCAGCCCCAGTGCATGTAG 61.117 63.158 0.00 0.00 40.86 2.74
1539 1623 2.045045 GCAGCCCCAGTGCATGTA 60.045 61.111 0.00 0.00 40.86 2.29
1605 1689 3.858247 TGCAGATGACATCAACTCTCTG 58.142 45.455 17.57 6.88 34.61 3.35
1990 2117 8.940952 GCTCATTAACTCAGTTCATAAAAGTCT 58.059 33.333 0.00 0.00 0.00 3.24
2002 2129 3.764434 TCGAAGAGGCTCATTAACTCAGT 59.236 43.478 18.26 0.00 33.76 3.41
2078 2214 3.796111 TCTTCTTGGACTCTCCTCCAAT 58.204 45.455 1.16 0.00 47.00 3.16
2196 2332 6.616577 TGGGGAGTAAAGTTCTGGTTATTTT 58.383 36.000 0.00 0.00 0.00 1.82
2214 2350 3.521126 CCAGGAACATAGGATATGGGGAG 59.479 52.174 2.15 0.00 0.00 4.30
2229 2365 6.744112 TGAATGTACAAATGTTTCCAGGAAC 58.256 36.000 0.00 0.00 0.00 3.62
2376 2513 9.875691 GCTTTCAATTAACTATCCAAGGAAAAT 57.124 29.630 0.00 0.00 0.00 1.82
2377 2514 9.088987 AGCTTTCAATTAACTATCCAAGGAAAA 57.911 29.630 0.00 0.00 0.00 2.29
2378 2515 8.522830 CAGCTTTCAATTAACTATCCAAGGAAA 58.477 33.333 0.00 0.00 0.00 3.13
2467 2624 1.595466 CCATCTCCTTCAGCAGATGC 58.405 55.000 2.53 0.00 43.27 3.91
2598 2755 4.402056 AAGATAATCCACGGTCGAACAT 57.598 40.909 0.00 0.00 0.00 2.71
2606 2763 8.889717 AGTTAACAACAATAAGATAATCCACGG 58.110 33.333 8.61 0.00 0.00 4.94
2649 2806 9.857656 AGGATAAATAATTTGCAGATCAGAAGA 57.142 29.630 0.00 0.00 0.00 2.87
2760 2917 2.311124 AGCAAGTACATTCCCTACGC 57.689 50.000 0.00 0.00 0.00 4.42
2862 3214 6.759497 AGCATTATACCAAGAAAACAGGAC 57.241 37.500 0.00 0.00 0.00 3.85
2925 3277 9.466497 AAAAGAAGAATAGGCAGATGAACAATA 57.534 29.630 0.00 0.00 0.00 1.90
2941 3293 4.261614 GCAAACGTCCCTCAAAAGAAGAAT 60.262 41.667 0.00 0.00 0.00 2.40
3334 3687 8.758715 GCAAATAAATCCAGCAATCATAAGAAC 58.241 33.333 0.00 0.00 0.00 3.01
3339 3692 7.350744 AGTGCAAATAAATCCAGCAATCATA 57.649 32.000 0.00 0.00 36.91 2.15
3414 3777 1.741706 TGGCTAGAACTCGAAGGTACG 59.258 52.381 0.00 0.00 0.00 3.67
3511 3874 5.249420 GTCTCCTTTTCCATTTAGCTCAGT 58.751 41.667 0.00 0.00 0.00 3.41
3623 3986 4.147321 TCTACCCCTAATATCACGGTCAC 58.853 47.826 0.00 0.00 0.00 3.67
3624 3987 4.105217 TCTCTACCCCTAATATCACGGTCA 59.895 45.833 0.00 0.00 0.00 4.02
3625 3988 4.660168 TCTCTACCCCTAATATCACGGTC 58.340 47.826 0.00 0.00 0.00 4.79
3626 3989 4.736611 TCTCTACCCCTAATATCACGGT 57.263 45.455 0.00 0.00 0.00 4.83
3716 4079 3.828451 AGTCCCAACAGAAATGTTCATGG 59.172 43.478 0.00 0.00 32.96 3.66
3773 4136 3.513517 CATTGGAGGGGGATAATGCAAT 58.486 45.455 0.00 0.00 35.67 3.56
3774 4137 2.961510 CATTGGAGGGGGATAATGCAA 58.038 47.619 0.00 0.00 0.00 4.08
3880 4243 9.609346 ACATAATTTGTTAGTGGGTATCAGTAC 57.391 33.333 0.00 0.00 33.74 2.73
3902 4276 7.566760 ACAAACAAGACACATGAGAAACATA 57.433 32.000 0.00 0.00 37.46 2.29
3914 4288 2.033424 GGAGAGGCAACAAACAAGACAC 59.967 50.000 0.00 0.00 41.41 3.67
4000 4374 1.628846 TCCTTACAACAGGGAAGCTCC 59.371 52.381 0.00 0.00 34.24 4.70
4019 4393 1.468908 CGTGCTCTCTCTGTGGATGTC 60.469 57.143 0.00 0.00 0.00 3.06
4056 4430 6.825213 CCAGATGATACCAAATTCTTCTCACA 59.175 38.462 0.00 0.00 0.00 3.58
4106 4480 7.902920 AAGTGATACATATTGGCCTGATTTT 57.097 32.000 3.32 0.00 0.00 1.82
4114 4488 5.649557 TGTTGCAAAGTGATACATATTGGC 58.350 37.500 0.00 0.00 0.00 4.52
4120 4494 6.262944 TGTTTCTCTGTTGCAAAGTGATACAT 59.737 34.615 19.67 0.00 29.89 2.29
4179 4553 1.732259 GCATGTACTGAGGGAACAACG 59.268 52.381 0.00 0.00 0.00 4.10
4180 4554 1.732259 CGCATGTACTGAGGGAACAAC 59.268 52.381 0.00 0.00 0.00 3.32
4181 4555 1.346395 ACGCATGTACTGAGGGAACAA 59.654 47.619 0.00 0.00 0.00 2.83
4182 4556 0.973632 ACGCATGTACTGAGGGAACA 59.026 50.000 0.00 0.00 0.00 3.18
4184 4558 0.391130 GCACGCATGTACTGAGGGAA 60.391 55.000 0.00 0.00 27.68 3.97
4185 4559 1.218047 GCACGCATGTACTGAGGGA 59.782 57.895 0.00 0.00 27.68 4.20
4186 4560 1.815421 GGCACGCATGTACTGAGGG 60.815 63.158 0.00 0.00 0.00 4.30
4187 4561 1.086067 CAGGCACGCATGTACTGAGG 61.086 60.000 1.21 0.00 35.95 3.86
4188 4562 1.699656 GCAGGCACGCATGTACTGAG 61.700 60.000 10.10 0.00 35.95 3.35
4189 4563 1.741401 GCAGGCACGCATGTACTGA 60.741 57.895 10.10 0.00 35.95 3.41
4192 4566 2.745884 TGGCAGGCACGCATGTAC 60.746 61.111 5.50 0.05 0.00 2.90
4215 4613 2.250924 CTCCCAAAAGCCCTTCATGTT 58.749 47.619 0.00 0.00 0.00 2.71
4236 4634 2.777094 TCATGCCGTGAAAATCACTCA 58.223 42.857 8.68 6.80 44.85 3.41
4245 4643 0.462937 CCGGGTTATCATGCCGTGAA 60.463 55.000 7.74 0.00 40.97 3.18
4262 4660 2.268076 CCCAGGCCACAAGAAACCG 61.268 63.158 5.01 0.00 0.00 4.44
4299 4697 1.356270 CTGCGAGCAAAGCAACACA 59.644 52.632 0.00 0.00 44.67 3.72
4379 4777 5.008613 GGCATCTTCAAACACAAGAGTAACA 59.991 40.000 0.00 0.00 33.36 2.41
4382 4780 4.713553 TGGCATCTTCAAACACAAGAGTA 58.286 39.130 0.00 0.00 33.36 2.59
4383 4781 3.554934 TGGCATCTTCAAACACAAGAGT 58.445 40.909 0.00 0.00 33.36 3.24
4437 4843 0.544697 ACAAGTAATTCGGGGCGGAT 59.455 50.000 0.00 0.00 0.00 4.18
4442 4848 5.340439 ACTCTAAGACAAGTAATTCGGGG 57.660 43.478 0.00 0.00 0.00 5.73
4455 4861 8.948145 TCACTTGTATCAAGACTACTCTAAGAC 58.052 37.037 15.04 0.00 0.00 3.01
4456 4862 9.688091 ATCACTTGTATCAAGACTACTCTAAGA 57.312 33.333 15.04 0.00 0.00 2.10
4461 4867 7.278868 CCCAAATCACTTGTATCAAGACTACTC 59.721 40.741 15.04 0.00 32.65 2.59
4462 4868 7.038302 TCCCAAATCACTTGTATCAAGACTACT 60.038 37.037 15.04 0.00 32.65 2.57
4463 4869 7.064728 GTCCCAAATCACTTGTATCAAGACTAC 59.935 40.741 15.04 0.00 32.65 2.73
4464 4870 7.103641 GTCCCAAATCACTTGTATCAAGACTA 58.896 38.462 15.04 2.25 32.65 2.59
4480 4886 2.440627 AGTATTACCCCCGTCCCAAATC 59.559 50.000 0.00 0.00 0.00 2.17
4545 4951 7.387397 CCAAAACCATAACAGCAAATGTGTAAT 59.613 33.333 0.00 0.00 43.00 1.89
4571 4977 1.718757 GATCATGGGCAGCCACGTTC 61.719 60.000 15.19 1.67 0.00 3.95
4576 4982 2.894765 CAATTATGATCATGGGCAGCCA 59.105 45.455 18.72 0.00 0.00 4.75
4610 5016 6.860023 GGCAACATAATTCTCATGCAATCTAC 59.140 38.462 0.00 0.00 35.57 2.59
4611 5017 6.546772 TGGCAACATAATTCTCATGCAATCTA 59.453 34.615 0.00 0.00 46.17 1.98
4631 5037 4.314740 ACTTAATTCAAACGCTTGGCAA 57.685 36.364 0.00 0.00 33.01 4.52
4633 5039 3.673338 GGAACTTAATTCAAACGCTTGGC 59.327 43.478 0.00 0.00 39.30 4.52
4634 5040 4.865776 TGGAACTTAATTCAAACGCTTGG 58.134 39.130 0.00 0.00 39.30 3.61
4635 5041 5.977129 ACTTGGAACTTAATTCAAACGCTTG 59.023 36.000 0.00 0.00 39.30 4.01
4637 5043 5.767816 ACTTGGAACTTAATTCAAACGCT 57.232 34.783 0.00 0.00 39.30 5.07
4639 5045 5.689961 CCCAACTTGGAACTTAATTCAAACG 59.310 40.000 9.61 0.00 40.96 3.60
4640 5046 6.578944 ACCCAACTTGGAACTTAATTCAAAC 58.421 36.000 9.61 0.00 40.96 2.93
4641 5047 6.800072 ACCCAACTTGGAACTTAATTCAAA 57.200 33.333 9.61 0.00 40.96 2.69
4642 5048 6.800072 AACCCAACTTGGAACTTAATTCAA 57.200 33.333 9.61 0.00 40.96 2.69
4643 5049 6.578023 CAAACCCAACTTGGAACTTAATTCA 58.422 36.000 9.61 0.00 40.96 2.57
4644 5050 5.465390 GCAAACCCAACTTGGAACTTAATTC 59.535 40.000 9.61 0.00 40.96 2.17
4645 5051 5.104735 TGCAAACCCAACTTGGAACTTAATT 60.105 36.000 9.61 0.00 40.96 1.40
4646 5052 4.407296 TGCAAACCCAACTTGGAACTTAAT 59.593 37.500 9.61 0.00 40.96 1.40
4647 5053 3.769844 TGCAAACCCAACTTGGAACTTAA 59.230 39.130 9.61 0.00 40.96 1.85
4648 5054 3.366396 TGCAAACCCAACTTGGAACTTA 58.634 40.909 9.61 0.00 40.96 2.24
4649 5055 2.183679 TGCAAACCCAACTTGGAACTT 58.816 42.857 9.61 0.00 40.96 2.66
4650 5056 1.859302 TGCAAACCCAACTTGGAACT 58.141 45.000 9.61 0.00 40.96 3.01
4651 5057 2.675844 GTTTGCAAACCCAACTTGGAAC 59.324 45.455 28.29 2.20 40.96 3.62
4655 5061 0.649993 GCGTTTGCAAACCCAACTTG 59.350 50.000 31.14 18.63 42.15 3.16
4661 5067 0.935831 GGTTACGCGTTTGCAAACCC 60.936 55.000 31.14 23.56 44.87 4.11
4675 5081 2.029290 TGGACTCTCTTCTTGCGGTTAC 60.029 50.000 0.00 0.00 0.00 2.50
4691 5097 9.244799 GAATTCAAACGTTTTCTAAAATGGACT 57.755 29.630 11.66 0.00 38.81 3.85
4692 5098 8.205297 CGAATTCAAACGTTTTCTAAAATGGAC 58.795 33.333 11.66 2.80 38.81 4.02
4693 5099 7.096394 GCGAATTCAAACGTTTTCTAAAATGGA 60.096 33.333 11.66 0.00 38.81 3.41
4694 5100 7.001347 GCGAATTCAAACGTTTTCTAAAATGG 58.999 34.615 11.66 0.00 38.81 3.16
4695 5101 7.001347 GGCGAATTCAAACGTTTTCTAAAATG 58.999 34.615 11.66 0.00 40.01 2.32
4697 5103 6.267070 AGGCGAATTCAAACGTTTTCTAAAA 58.733 32.000 11.66 1.74 0.00 1.52
4698 5104 5.823353 AGGCGAATTCAAACGTTTTCTAAA 58.177 33.333 11.66 4.22 0.00 1.85
4699 5105 5.427036 AGGCGAATTCAAACGTTTTCTAA 57.573 34.783 11.66 6.73 0.00 2.10
4701 5107 3.982576 AGGCGAATTCAAACGTTTTCT 57.017 38.095 11.66 0.00 0.00 2.52
4702 5108 4.039032 TCAAGGCGAATTCAAACGTTTTC 58.961 39.130 11.66 5.58 0.00 2.29
4703 5109 4.035278 TCAAGGCGAATTCAAACGTTTT 57.965 36.364 11.66 0.00 0.00 2.43
4704 5110 3.701532 TCAAGGCGAATTCAAACGTTT 57.298 38.095 7.96 7.96 0.00 3.60
4705 5111 3.915437 ATCAAGGCGAATTCAAACGTT 57.085 38.095 6.22 0.00 0.00 3.99
4707 5113 4.095610 GGTTATCAAGGCGAATTCAAACG 58.904 43.478 6.22 0.00 0.00 3.60
4709 5115 3.754323 ACGGTTATCAAGGCGAATTCAAA 59.246 39.130 6.22 0.00 0.00 2.69
4710 5116 3.340034 ACGGTTATCAAGGCGAATTCAA 58.660 40.909 6.22 0.00 0.00 2.69
4712 5118 4.807304 TCTAACGGTTATCAAGGCGAATTC 59.193 41.667 0.29 0.00 0.00 2.17
4714 5120 4.395959 TCTAACGGTTATCAAGGCGAAT 57.604 40.909 0.29 0.00 0.00 3.34
4715 5121 3.872511 TCTAACGGTTATCAAGGCGAA 57.127 42.857 0.29 0.00 0.00 4.70
4716 5122 3.713288 CATCTAACGGTTATCAAGGCGA 58.287 45.455 0.29 0.00 0.00 5.54
4743 5180 4.918201 GGAAGGATCGGCCAGGCG 62.918 72.222 5.00 7.36 40.02 5.52
4744 5181 3.468326 GAGGAAGGATCGGCCAGGC 62.468 68.421 1.26 1.26 40.02 4.85
4745 5182 1.753368 GAGAGGAAGGATCGGCCAGG 61.753 65.000 2.24 0.00 40.02 4.45
4746 5183 0.758685 AGAGAGGAAGGATCGGCCAG 60.759 60.000 2.24 0.00 40.02 4.85
4747 5184 1.045350 CAGAGAGGAAGGATCGGCCA 61.045 60.000 2.24 0.00 40.02 5.36
4748 5185 1.745264 CAGAGAGGAAGGATCGGCC 59.255 63.158 0.00 0.00 0.00 6.13
4749 5186 1.068921 GCAGAGAGGAAGGATCGGC 59.931 63.158 0.00 0.00 0.00 5.54
4750 5187 1.045350 TGGCAGAGAGGAAGGATCGG 61.045 60.000 0.00 0.00 0.00 4.18
4751 5188 0.388659 CTGGCAGAGAGGAAGGATCG 59.611 60.000 9.42 0.00 0.00 3.69
4752 5189 1.412343 GACTGGCAGAGAGGAAGGATC 59.588 57.143 23.66 0.00 0.00 3.36
4753 5190 1.008206 AGACTGGCAGAGAGGAAGGAT 59.992 52.381 23.66 0.00 0.00 3.24
4754 5191 0.411452 AGACTGGCAGAGAGGAAGGA 59.589 55.000 23.66 0.00 0.00 3.36
4755 5192 0.536260 CAGACTGGCAGAGAGGAAGG 59.464 60.000 23.66 0.00 0.00 3.46
4771 5208 0.251386 ACGACAGAGGAAGGAGCAGA 60.251 55.000 0.00 0.00 0.00 4.26
4799 5237 1.430632 GTGATTCACCATGCCGCAG 59.569 57.895 5.44 0.00 0.00 5.18
4803 5241 1.430632 CTGCGTGATTCACCATGCC 59.569 57.895 11.12 0.00 45.77 4.40
4807 5245 1.514678 GCAACCTGCGTGATTCACCA 61.515 55.000 11.12 9.01 31.71 4.17
4808 5246 1.210155 GCAACCTGCGTGATTCACC 59.790 57.895 11.12 5.00 31.71 4.02
4809 5247 1.210155 GGCAACCTGCGTGATTCAC 59.790 57.895 6.73 6.73 46.21 3.18
4810 5248 3.667087 GGCAACCTGCGTGATTCA 58.333 55.556 0.00 0.00 46.21 2.57
4853 5462 6.563422 TCTGAACCTGAATTTTCAACAACTG 58.437 36.000 0.00 0.00 36.64 3.16
4865 5474 7.337942 GTGAACTTTCCATATCTGAACCTGAAT 59.662 37.037 0.00 0.00 0.00 2.57
4910 5519 1.448540 CGAGGGCAATCACGCTTCT 60.449 57.895 0.00 0.00 32.19 2.85
4911 5520 1.424493 CTCGAGGGCAATCACGCTTC 61.424 60.000 3.91 0.00 32.19 3.86
4921 5547 2.688666 AATCAGGGCTCGAGGGCA 60.689 61.111 15.58 0.00 42.84 5.36
4922 5548 2.110006 GAATCAGGGCTCGAGGGC 59.890 66.667 15.58 7.21 40.05 5.19
4928 5554 2.580962 GGATTTGAGGAATCAGGGCTC 58.419 52.381 1.72 0.00 44.91 4.70
4935 5561 3.117046 GAGACGACGGATTTGAGGAATC 58.883 50.000 0.00 0.00 42.84 2.52
4949 5579 2.708255 CGCCGAGTAGGAGACGAC 59.292 66.667 0.00 0.00 43.02 4.34
4966 5596 3.267860 CGGCGAGATGAAGCAGCC 61.268 66.667 0.00 0.00 44.00 4.85
4970 5600 3.267860 CTGGCGGCGAGATGAAGC 61.268 66.667 12.98 0.00 0.00 3.86
4971 5601 3.267860 GCTGGCGGCGAGATGAAG 61.268 66.667 16.56 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.