Multiple sequence alignment - TraesCS6A01G330600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G330600 chr6A 100.000 6443 0 0 1 6443 563125626 563132068 0.000000e+00 11899.0
1 TraesCS6A01G330600 chr6A 97.895 95 2 0 2277 2371 262052042 262052136 1.440000e-36 165.0
2 TraesCS6A01G330600 chr6A 95.000 40 2 0 4003 4042 563129590 563129629 5.390000e-06 63.9
3 TraesCS6A01G330600 chr6A 95.000 40 2 0 3965 4004 563129628 563129667 5.390000e-06 63.9
4 TraesCS6A01G330600 chr6B 91.745 2556 125 42 3922 6443 632964691 632967194 0.000000e+00 3472.0
5 TraesCS6A01G330600 chr6B 95.462 1190 35 9 2392 3580 632963362 632964533 0.000000e+00 1881.0
6 TraesCS6A01G330600 chr6B 86.712 1746 131 46 569 2288 632961660 632963330 0.000000e+00 1845.0
7 TraesCS6A01G330600 chr6B 90.415 386 28 7 1 382 11576436 11576056 3.470000e-137 499.0
8 TraesCS6A01G330600 chr6B 96.721 122 3 1 3803 3924 632964499 632964619 1.100000e-47 202.0
9 TraesCS6A01G330600 chr6B 96.739 92 2 1 3575 3666 632964590 632964680 1.120000e-32 152.0
10 TraesCS6A01G330600 chr6D 96.898 1386 25 11 3922 5298 420012573 420013949 0.000000e+00 2305.0
11 TraesCS6A01G330600 chr6D 93.315 1421 72 11 883 2288 420009581 420010993 0.000000e+00 2076.0
12 TraesCS6A01G330600 chr6D 97.545 1222 15 6 2366 3580 420010988 420012201 0.000000e+00 2076.0
13 TraesCS6A01G330600 chr6D 93.452 1176 42 12 5286 6443 420014042 420015200 0.000000e+00 1712.0
14 TraesCS6A01G330600 chr6D 98.734 158 2 0 3767 3924 420012344 420012501 1.370000e-71 281.0
15 TraesCS6A01G330600 chr6D 83.553 304 15 14 631 924 420009270 420009548 1.070000e-62 252.0
16 TraesCS6A01G330600 chr6D 97.541 122 2 1 3803 3924 420012167 420012287 2.350000e-49 207.0
17 TraesCS6A01G330600 chr6D 97.895 95 2 0 2277 2371 221219308 221219402 1.440000e-36 165.0
18 TraesCS6A01G330600 chr6D 98.913 92 0 1 3575 3666 420012258 420012348 5.170000e-36 163.0
19 TraesCS6A01G330600 chr6D 96.739 92 2 1 3575 3666 420012472 420012562 1.120000e-32 152.0
20 TraesCS6A01G330600 chr6D 97.500 40 1 0 3965 4004 420012654 420012693 1.160000e-07 69.4
21 TraesCS6A01G330600 chr6D 95.000 40 2 0 4003 4042 420012616 420012655 5.390000e-06 63.9
22 TraesCS6A01G330600 chr3D 86.316 570 69 8 1 569 379090169 379089608 4.270000e-171 612.0
23 TraesCS6A01G330600 chr3D 93.388 121 8 0 6196 6316 424687089 424686969 5.130000e-41 180.0
24 TraesCS6A01G330600 chr1B 84.055 577 81 11 1 574 76030679 76031247 4.390000e-151 545.0
25 TraesCS6A01G330600 chr1B 83.391 578 83 10 1 574 71185147 71184579 2.060000e-144 523.0
26 TraesCS6A01G330600 chr1B 83.743 529 63 18 1319 1839 38749949 38749436 4.520000e-131 479.0
27 TraesCS6A01G330600 chr1B 83.650 263 37 6 258 520 76160267 76160523 6.450000e-60 243.0
28 TraesCS6A01G330600 chr1B 87.037 108 14 0 5153 5260 160325216 160325323 8.770000e-24 122.0
29 TraesCS6A01G330600 chr1B 91.525 59 5 0 1765 1823 160491102 160491160 1.490000e-11 82.4
30 TraesCS6A01G330600 chr4B 84.916 537 58 15 1311 1839 67368713 67368192 7.400000e-144 521.0
31 TraesCS6A01G330600 chr4B 89.378 386 32 7 1 382 55729262 55729642 1.630000e-130 477.0
32 TraesCS6A01G330600 chr4B 92.857 126 8 1 3656 3781 664786281 664786405 1.430000e-41 182.0
33 TraesCS6A01G330600 chr4B 90.909 110 9 1 5152 5260 30729289 30729180 5.210000e-31 147.0
34 TraesCS6A01G330600 chr7D 89.583 384 34 6 1 383 71876210 71875832 3.490000e-132 483.0
35 TraesCS6A01G330600 chr7D 94.958 119 5 1 3655 3773 174803141 174803258 1.100000e-42 185.0
36 TraesCS6A01G330600 chr7D 96.000 100 4 0 2274 2373 85908376 85908475 5.170000e-36 163.0
37 TraesCS6A01G330600 chr5D 89.583 384 34 6 1 383 356697455 356697077 3.490000e-132 483.0
38 TraesCS6A01G330600 chr5D 89.610 385 33 7 1 383 444479582 444479961 3.490000e-132 483.0
39 TraesCS6A01G330600 chr5D 95.041 121 6 0 6196 6316 482311547 482311427 2.370000e-44 191.0
40 TraesCS6A01G330600 chr5D 92.366 131 8 1 6186 6316 482311912 482312040 1.100000e-42 185.0
41 TraesCS6A01G330600 chr5D 90.840 131 10 1 6186 6316 307933807 307933935 2.390000e-39 174.0
42 TraesCS6A01G330600 chr3B 89.091 385 35 7 1 384 139039562 139039184 7.560000e-129 472.0
43 TraesCS6A01G330600 chr2B 85.138 471 51 11 1375 1839 753389234 753389691 1.270000e-126 464.0
44 TraesCS6A01G330600 chr2B 81.285 358 45 13 1318 1669 775265566 775265907 2.960000e-68 270.0
45 TraesCS6A01G330600 chr2B 98.198 111 2 0 3660 3770 567581908 567582018 1.830000e-45 195.0
46 TraesCS6A01G330600 chr2B 95.575 113 5 0 6196 6308 726456053 726456165 1.430000e-41 182.0
47 TraesCS6A01G330600 chr2B 96.939 98 2 1 2281 2378 33495619 33495523 5.170000e-36 163.0
48 TraesCS6A01G330600 chr2B 84.762 105 16 0 5161 5265 169856253 169856149 8.830000e-19 106.0
49 TraesCS6A01G330600 chr4A 98.198 111 2 0 3659 3769 400753924 400754034 1.830000e-45 195.0
50 TraesCS6A01G330600 chr4A 97.917 96 0 2 2275 2369 542275966 542276060 1.440000e-36 165.0
51 TraesCS6A01G330600 chr5A 98.182 110 2 0 3663 3772 402092742 402092633 6.590000e-45 193.0
52 TraesCS6A01G330600 chr5A 97.321 112 3 0 3658 3769 95823193 95823082 2.370000e-44 191.0
53 TraesCS6A01G330600 chr2D 95.041 121 6 0 6196 6316 396726128 396726008 2.370000e-44 191.0
54 TraesCS6A01G330600 chr2D 95.614 114 5 0 3657 3770 646008386 646008273 3.970000e-42 183.0
55 TraesCS6A01G330600 chr2D 98.936 94 1 0 2283 2376 555221188 555221095 1.110000e-37 169.0
56 TraesCS6A01G330600 chr7A 95.726 117 5 0 3660 3776 565335673 565335557 8.530000e-44 189.0
57 TraesCS6A01G330600 chr7A 87.387 111 13 1 5151 5260 257126095 257125985 6.780000e-25 126.0
58 TraesCS6A01G330600 chr7B 92.800 125 9 0 3660 3784 732134691 732134567 1.430000e-41 182.0
59 TraesCS6A01G330600 chr7B 90.426 94 9 0 5154 5247 513654311 513654218 2.440000e-24 124.0
60 TraesCS6A01G330600 chr1D 91.603 131 9 1 6186 6316 52102873 52103001 5.130000e-41 180.0
61 TraesCS6A01G330600 chr1D 96.939 98 1 2 2278 2374 16084846 16084942 5.170000e-36 163.0
62 TraesCS6A01G330600 chr1D 96.939 98 1 2 2278 2374 16086801 16086897 5.170000e-36 163.0
63 TraesCS6A01G330600 chr1D 83.898 118 17 2 5153 5268 106839622 106839505 1.900000e-20 111.0
64 TraesCS6A01G330600 chr2A 100.000 91 0 0 2283 2373 177665199 177665289 1.110000e-37 169.0
65 TraesCS6A01G330600 chr4D 90.265 113 10 1 5149 5260 18693546 18693434 5.210000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G330600 chr6A 563125626 563132068 6442 False 4008.933333 11899 96.666667 1 6443 3 chr6A.!!$F2 6442
1 TraesCS6A01G330600 chr6B 632961660 632967194 5534 False 1510.400000 3472 93.475800 569 6443 5 chr6B.!!$F1 5874
2 TraesCS6A01G330600 chr6D 420009270 420015200 5930 False 850.663636 2305 95.380909 631 6443 11 chr6D.!!$F2 5812
3 TraesCS6A01G330600 chr3D 379089608 379090169 561 True 612.000000 612 86.316000 1 569 1 chr3D.!!$R1 568
4 TraesCS6A01G330600 chr1B 76030679 76031247 568 False 545.000000 545 84.055000 1 574 1 chr1B.!!$F1 573
5 TraesCS6A01G330600 chr1B 71184579 71185147 568 True 523.000000 523 83.391000 1 574 1 chr1B.!!$R2 573
6 TraesCS6A01G330600 chr1B 38749436 38749949 513 True 479.000000 479 83.743000 1319 1839 1 chr1B.!!$R1 520
7 TraesCS6A01G330600 chr4B 67368192 67368713 521 True 521.000000 521 84.916000 1311 1839 1 chr4B.!!$R2 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
398 402 0.528684 GAGATCCGCGTTGAAGGAGG 60.529 60.000 4.92 1.05 40.26 4.30 F
1184 1265 0.173481 GAGGTGCTGCAGTCGATACA 59.827 55.000 16.64 0.00 0.00 2.29 F
1405 1499 0.535797 ACAACGAAGCTAGGGCCTAC 59.464 55.000 9.81 7.09 39.73 3.18 F
1909 2015 0.833949 TTGGTTTGGGAAAAGGTGGC 59.166 50.000 0.00 0.00 0.00 5.01 F
2295 2402 2.040813 TGTTAGTCAGTACTCCCTCCGT 59.959 50.000 0.00 0.00 37.15 4.69 F
3202 3327 2.536761 TTAAGGGACACTTGACACCG 57.463 50.000 0.00 0.00 40.37 4.94 F
3678 3864 0.033796 ATGTACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.00 4.55 F
3679 3865 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30 F
3690 3876 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1405 1499 0.445436 CAAGACAGCAAGCTTAGCCG 59.555 55.000 14.63 9.12 0.00 5.52 R
2018 2124 2.238646 CCAGGGAAGTACTTATGCCACA 59.761 50.000 8.42 0.00 0.00 4.17 R
2693 2817 3.822940 TGCTCATGATGACATAATGGCA 58.177 40.909 18.08 18.08 41.29 4.92 R
3670 3856 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44 R
3671 3857 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95 R
5036 5303 0.874390 TCTTGCGACACCAAATGAGC 59.126 50.000 0.00 0.00 36.50 4.26 R
5176 5444 1.028330 CACATCCAGTTGAGCGCCAT 61.028 55.000 2.29 0.00 0.00 4.40 R
5385 5758 1.105457 GCATGGTATCAAAGCCAGCA 58.895 50.000 0.00 0.00 38.27 4.41 R
5618 5992 2.273370 CGCAGCAATCTCAAAGCAAT 57.727 45.000 0.00 0.00 0.00 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.533730 TCTCTGGTTGAAGCTTTTTCATCTA 58.466 36.000 0.00 0.00 0.00 1.98
26 27 6.061441 TCTGGTTGAAGCTTTTTCATCTACA 58.939 36.000 0.00 0.00 0.00 2.74
134 136 1.141858 TGTGTCCATGGTTGTAGCACA 59.858 47.619 12.58 14.34 33.71 4.57
141 143 3.305335 CCATGGTTGTAGCACAGGAAAAC 60.305 47.826 2.57 0.00 0.00 2.43
155 157 1.273688 GAAAACGCCGTTTGCAACTT 58.726 45.000 16.86 0.00 41.33 2.66
157 159 1.715993 AAACGCCGTTTGCAACTTTT 58.284 40.000 15.33 0.00 41.33 2.27
158 160 1.715993 AACGCCGTTTGCAACTTTTT 58.284 40.000 0.00 0.00 41.33 1.94
183 185 4.749310 CGCGGTTGCAGCTCCTCT 62.749 66.667 0.00 0.00 42.97 3.69
205 207 0.953471 GTCGCCATGGTTGTAGCACA 60.953 55.000 14.67 0.00 0.00 4.57
222 225 3.999285 AGGCACCTCGGTCCTCCT 61.999 66.667 0.00 0.00 0.00 3.69
224 227 2.997897 GCACCTCGGTCCTCCTGT 60.998 66.667 0.00 0.00 0.00 4.00
311 314 3.491342 AGAAGGAAGAAAAAGGAGGTGC 58.509 45.455 0.00 0.00 0.00 5.01
392 396 3.207354 GGAGGAGATCCGCGTTGA 58.793 61.111 4.92 0.00 38.67 3.18
393 397 1.515954 GGAGGAGATCCGCGTTGAA 59.484 57.895 4.92 0.00 38.67 2.69
396 400 0.970937 AGGAGATCCGCGTTGAAGGA 60.971 55.000 4.92 0.00 42.08 3.36
398 402 0.528684 GAGATCCGCGTTGAAGGAGG 60.529 60.000 4.92 1.05 40.26 4.30
399 403 0.970937 AGATCCGCGTTGAAGGAGGA 60.971 55.000 12.47 12.47 40.26 3.71
401 405 0.970937 ATCCGCGTTGAAGGAGGAGA 60.971 55.000 15.06 0.00 40.26 3.71
402 406 1.446272 CCGCGTTGAAGGAGGAGAC 60.446 63.158 4.92 0.00 0.00 3.36
421 425 2.782222 GGGTAGAGATGCGGCGTCA 61.782 63.158 23.07 7.70 0.00 4.35
452 456 1.898574 CCGCACAAGGTTGAAGGCT 60.899 57.895 0.00 0.00 0.00 4.58
456 460 1.148273 ACAAGGTTGAAGGCTGCGA 59.852 52.632 0.00 0.00 0.00 5.10
458 462 0.603707 CAAGGTTGAAGGCTGCGAGA 60.604 55.000 0.00 0.00 0.00 4.04
472 476 2.747686 GAGAGTGGCCCCGTTTCA 59.252 61.111 0.00 0.00 0.00 2.69
492 496 4.558178 TCATACGTGTCGTTTGGTGTATT 58.442 39.130 0.00 0.00 41.54 1.89
493 497 5.707931 TCATACGTGTCGTTTGGTGTATTA 58.292 37.500 0.00 0.00 41.54 0.98
497 501 3.982701 CGTGTCGTTTGGTGTATTACTGA 59.017 43.478 0.00 0.00 0.00 3.41
529 533 2.189521 GGATGCGTCCGACCCAAT 59.810 61.111 9.75 0.00 34.13 3.16
540 544 3.912745 GACCCAATGTTCGGCCGGT 62.913 63.158 27.83 12.71 0.00 5.28
543 547 3.361158 CAATGTTCGGCCGGTGCA 61.361 61.111 27.83 21.22 40.13 4.57
566 570 2.034179 CGTCCCCAAACAGTTTCCTTTC 59.966 50.000 0.00 0.00 0.00 2.62
575 579 6.202762 CCAAACAGTTTCCTTTCTTAAATGCC 59.797 38.462 0.00 0.00 0.00 4.40
576 580 6.478512 AACAGTTTCCTTTCTTAAATGCCA 57.521 33.333 0.00 0.00 0.00 4.92
579 583 6.267471 ACAGTTTCCTTTCTTAAATGCCATGA 59.733 34.615 0.00 0.00 0.00 3.07
581 585 7.656948 CAGTTTCCTTTCTTAAATGCCATGAAA 59.343 33.333 0.00 0.00 0.00 2.69
629 633 1.006102 CCCGCGAGAGTTGAACTGT 60.006 57.895 8.23 0.00 0.00 3.55
670 674 2.202932 ATCGATGCTGCGGTCACC 60.203 61.111 0.00 0.00 0.00 4.02
772 784 9.994432 GAGATTAATTATTAATTGGAGCATCCG 57.006 33.333 11.00 0.00 46.79 4.18
781 793 2.571757 GAGCATCCGTCGGACACA 59.428 61.111 18.08 0.00 32.98 3.72
782 794 1.805945 GAGCATCCGTCGGACACAC 60.806 63.158 18.08 6.58 32.98 3.82
787 799 1.592400 ATCCGTCGGACACACGATGT 61.592 55.000 18.08 0.00 45.73 3.06
801 813 1.478510 ACGATGTGGAGAGCAAGGTAG 59.521 52.381 0.00 0.00 0.00 3.18
802 814 1.478510 CGATGTGGAGAGCAAGGTAGT 59.521 52.381 0.00 0.00 0.00 2.73
804 816 3.489398 CGATGTGGAGAGCAAGGTAGTAC 60.489 52.174 0.00 0.00 0.00 2.73
806 818 2.826128 TGTGGAGAGCAAGGTAGTACAG 59.174 50.000 2.06 0.00 0.00 2.74
807 819 2.826725 GTGGAGAGCAAGGTAGTACAGT 59.173 50.000 2.06 0.00 0.00 3.55
809 821 4.461781 GTGGAGAGCAAGGTAGTACAGTAA 59.538 45.833 2.06 0.00 0.00 2.24
1066 1145 0.333312 TCTCTCGCTCCCTTCCTTCT 59.667 55.000 0.00 0.00 0.00 2.85
1076 1155 1.377333 CTTCCTTCTCCGGTTGCCC 60.377 63.158 0.00 0.00 0.00 5.36
1119 1198 4.933064 CGCGGAGATCGGCTGGAC 62.933 72.222 0.00 0.00 39.64 4.02
1184 1265 0.173481 GAGGTGCTGCAGTCGATACA 59.827 55.000 16.64 0.00 0.00 2.29
1212 1293 3.669354 CGGAAGCTAGCTGGGTTAG 57.331 57.895 20.16 8.37 0.00 2.34
1218 1299 3.847671 AGCTAGCTGGGTTAGAAATCC 57.152 47.619 18.57 0.00 0.00 3.01
1232 1313 4.537433 ATCCTGGCGCGAGAAGGC 62.537 66.667 21.98 0.00 36.67 4.35
1240 1321 3.479269 GCGAGAAGGCGTCGTTGG 61.479 66.667 8.39 0.00 39.69 3.77
1249 1330 1.353804 GCGTCGTTGGTTGCTGAAA 59.646 52.632 0.00 0.00 0.00 2.69
1294 1377 4.680407 AGGGGTTAGGGTTTTAAATCCAC 58.320 43.478 9.87 0.00 0.00 4.02
1295 1378 3.770933 GGGGTTAGGGTTTTAAATCCACC 59.229 47.826 9.87 8.65 0.00 4.61
1347 1440 4.078516 CGTCCCCCGGTGACTTCC 62.079 72.222 16.59 0.00 0.00 3.46
1354 1447 1.677820 CCCCGGTGACTTCCAACATAC 60.678 57.143 0.00 0.00 31.20 2.39
1376 1470 2.638480 TGCTTGGTTTCTAGCAGTGT 57.362 45.000 0.00 0.00 44.36 3.55
1405 1499 0.535797 ACAACGAAGCTAGGGCCTAC 59.464 55.000 9.81 7.09 39.73 3.18
1417 1512 3.410958 GCCTACGGCTAAGCTTGC 58.589 61.111 9.86 10.63 46.69 4.01
1549 1646 1.721389 CGATGGCTTCCGTTCGATATG 59.279 52.381 0.00 0.00 34.96 1.78
1617 1717 2.403586 GGAAATTTCGGAGGCGCG 59.596 61.111 11.95 0.00 0.00 6.86
1623 1723 2.781595 ATTTCGGAGGCGCGTTGACT 62.782 55.000 8.43 0.55 40.41 3.41
1855 1961 4.464008 TGGGCATCAGGACAATTAATCTC 58.536 43.478 0.00 0.00 0.00 2.75
1909 2015 0.833949 TTGGTTTGGGAAAAGGTGGC 59.166 50.000 0.00 0.00 0.00 5.01
2018 2124 9.713684 TCTTGGTTCCATAATTTTGGATCTTAT 57.286 29.630 17.07 0.00 45.08 1.73
2093 2199 9.956720 GTCAAGAAGGGATGATACAATATTTTG 57.043 33.333 0.00 0.00 38.86 2.44
2282 2389 7.602265 TCTCGAAATCACATCATTTGTTAGTCA 59.398 33.333 0.00 0.00 36.00 3.41
2283 2390 7.742151 TCGAAATCACATCATTTGTTAGTCAG 58.258 34.615 0.00 0.00 36.00 3.51
2284 2391 7.387673 TCGAAATCACATCATTTGTTAGTCAGT 59.612 33.333 0.00 0.00 36.00 3.41
2285 2392 8.655970 CGAAATCACATCATTTGTTAGTCAGTA 58.344 33.333 0.00 0.00 36.00 2.74
2286 2393 9.760660 GAAATCACATCATTTGTTAGTCAGTAC 57.239 33.333 0.00 0.00 36.00 2.73
2287 2394 9.507329 AAATCACATCATTTGTTAGTCAGTACT 57.493 29.630 0.00 0.00 36.00 2.73
2288 2395 8.709386 ATCACATCATTTGTTAGTCAGTACTC 57.291 34.615 0.00 0.00 36.00 2.59
2289 2396 7.097192 TCACATCATTTGTTAGTCAGTACTCC 58.903 38.462 0.00 0.00 36.00 3.85
2290 2397 6.313905 CACATCATTTGTTAGTCAGTACTCCC 59.686 42.308 0.00 0.00 36.00 4.30
2291 2398 6.213600 ACATCATTTGTTAGTCAGTACTCCCT 59.786 38.462 0.00 0.00 33.74 4.20
2292 2399 6.282199 TCATTTGTTAGTCAGTACTCCCTC 57.718 41.667 0.00 0.00 37.15 4.30
2293 2400 5.187186 TCATTTGTTAGTCAGTACTCCCTCC 59.813 44.000 0.00 0.00 37.15 4.30
2294 2401 2.719739 TGTTAGTCAGTACTCCCTCCG 58.280 52.381 0.00 0.00 37.15 4.63
2295 2402 2.040813 TGTTAGTCAGTACTCCCTCCGT 59.959 50.000 0.00 0.00 37.15 4.69
2296 2403 3.264193 TGTTAGTCAGTACTCCCTCCGTA 59.736 47.826 0.00 0.00 37.15 4.02
2297 2404 4.263462 TGTTAGTCAGTACTCCCTCCGTAA 60.263 45.833 0.00 0.00 37.15 3.18
2298 2405 3.446442 AGTCAGTACTCCCTCCGTAAA 57.554 47.619 0.00 0.00 0.00 2.01
2299 2406 3.087781 AGTCAGTACTCCCTCCGTAAAC 58.912 50.000 0.00 0.00 0.00 2.01
2300 2407 3.087781 GTCAGTACTCCCTCCGTAAACT 58.912 50.000 0.00 0.00 0.00 2.66
2301 2408 4.018960 AGTCAGTACTCCCTCCGTAAACTA 60.019 45.833 0.00 0.00 0.00 2.24
2302 2409 4.702131 GTCAGTACTCCCTCCGTAAACTAA 59.298 45.833 0.00 0.00 0.00 2.24
2303 2410 5.359292 GTCAGTACTCCCTCCGTAAACTAAT 59.641 44.000 0.00 0.00 0.00 1.73
2304 2411 6.543831 GTCAGTACTCCCTCCGTAAACTAATA 59.456 42.308 0.00 0.00 0.00 0.98
2305 2412 7.230309 GTCAGTACTCCCTCCGTAAACTAATAT 59.770 40.741 0.00 0.00 0.00 1.28
2306 2413 8.439971 TCAGTACTCCCTCCGTAAACTAATATA 58.560 37.037 0.00 0.00 0.00 0.86
2307 2414 9.071276 CAGTACTCCCTCCGTAAACTAATATAA 57.929 37.037 0.00 0.00 0.00 0.98
2308 2415 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
2309 2416 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
2310 2417 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2311 2418 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
2312 2419 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
2313 2420 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
2314 2421 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
2315 2422 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
2316 2423 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
2317 2424 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
2318 2425 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
2332 2439 9.570488 AAGAGCGTTTAGAATACTAAAGTAGTG 57.430 33.333 0.00 0.00 45.42 2.74
2333 2440 8.954350 AGAGCGTTTAGAATACTAAAGTAGTGA 58.046 33.333 0.00 0.00 45.42 3.41
2334 2441 9.733219 GAGCGTTTAGAATACTAAAGTAGTGAT 57.267 33.333 0.00 0.00 45.42 3.06
2335 2442 9.733219 AGCGTTTAGAATACTAAAGTAGTGATC 57.267 33.333 0.00 0.00 45.42 2.92
2336 2443 9.733219 GCGTTTAGAATACTAAAGTAGTGATCT 57.267 33.333 0.00 4.67 45.42 2.75
2342 2449 9.733219 AGAATACTAAAGTAGTGATCTAAACGC 57.267 33.333 0.00 0.00 39.81 4.84
2343 2450 9.733219 GAATACTAAAGTAGTGATCTAAACGCT 57.267 33.333 0.00 0.00 39.81 5.07
2344 2451 9.733219 AATACTAAAGTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 39.81 5.03
2345 2452 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
2346 2453 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
2347 2454 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
2348 2455 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
2363 2470 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
2364 2471 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
2829 2953 5.119898 TGTGCTTTGATTTTTGTGTGTTCAC 59.880 36.000 0.00 0.00 44.08 3.18
2872 2996 8.189119 TCTTTATTTTTATTGCACTCCCAAGT 57.811 30.769 0.00 0.00 35.60 3.16
2873 2997 9.303116 TCTTTATTTTTATTGCACTCCCAAGTA 57.697 29.630 0.00 0.00 33.25 2.24
3202 3327 2.536761 TTAAGGGACACTTGACACCG 57.463 50.000 0.00 0.00 40.37 4.94
3570 3695 7.011482 GGTGAGTATTGACATGTAACATCTTCC 59.989 40.741 0.00 0.04 0.00 3.46
3664 3850 4.795278 GCAAAGCATTTCTGTAGCATGTAC 59.205 41.667 0.00 0.00 35.03 2.90
3665 3851 5.392380 GCAAAGCATTTCTGTAGCATGTACT 60.392 40.000 0.00 0.00 35.03 2.73
3666 3852 6.253746 CAAAGCATTTCTGTAGCATGTACTC 58.746 40.000 0.00 0.00 35.03 2.59
3667 3853 4.446371 AGCATTTCTGTAGCATGTACTCC 58.554 43.478 0.00 0.00 0.00 3.85
3668 3854 3.561725 GCATTTCTGTAGCATGTACTCCC 59.438 47.826 0.00 0.00 0.00 4.30
3669 3855 4.684485 GCATTTCTGTAGCATGTACTCCCT 60.684 45.833 0.00 0.00 0.00 4.20
3670 3856 4.737855 TTTCTGTAGCATGTACTCCCTC 57.262 45.455 0.00 0.00 0.00 4.30
3671 3857 2.667470 TCTGTAGCATGTACTCCCTCC 58.333 52.381 0.00 0.00 0.00 4.30
3672 3858 1.338337 CTGTAGCATGTACTCCCTCCG 59.662 57.143 0.00 0.00 0.00 4.63
3673 3859 1.341679 TGTAGCATGTACTCCCTCCGT 60.342 52.381 0.00 0.00 0.00 4.69
3674 3860 1.755380 GTAGCATGTACTCCCTCCGTT 59.245 52.381 0.00 0.00 0.00 4.44
3675 3861 0.824759 AGCATGTACTCCCTCCGTTC 59.175 55.000 0.00 0.00 0.00 3.95
3676 3862 0.527817 GCATGTACTCCCTCCGTTCG 60.528 60.000 0.00 0.00 0.00 3.95
3677 3863 0.102481 CATGTACTCCCTCCGTTCGG 59.898 60.000 4.74 4.74 0.00 4.30
3678 3864 0.033796 ATGTACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.00 4.55
3679 3865 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30
3680 3866 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
3681 3867 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
3682 3868 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
3683 3869 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
3684 3870 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
3685 3871 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
3686 3872 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
3687 3873 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
3688 3874 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
3689 3875 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
3690 3876 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
3691 3877 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
3692 3878 2.222508 CGTTCGGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
3693 3879 2.991190 GTTCGGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
3694 3880 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
3695 3881 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
3696 3882 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
3697 3883 4.092821 TCGGAATTACTTGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
3698 3884 4.092821 CGGAATTACTTGTCGCAGAAATGA 59.907 41.667 0.00 0.00 39.69 2.57
3699 3885 5.390461 CGGAATTACTTGTCGCAGAAATGAA 60.390 40.000 0.00 0.00 39.69 2.57
3700 3886 6.555315 GGAATTACTTGTCGCAGAAATGAAT 58.445 36.000 0.00 0.00 39.69 2.57
3701 3887 6.470235 GGAATTACTTGTCGCAGAAATGAATG 59.530 38.462 0.00 0.00 39.69 2.67
3702 3888 5.940192 TTACTTGTCGCAGAAATGAATGT 57.060 34.783 0.00 0.00 39.69 2.71
3703 3889 7.609760 ATTACTTGTCGCAGAAATGAATGTA 57.390 32.000 0.00 0.00 39.69 2.29
3704 3890 7.609760 TTACTTGTCGCAGAAATGAATGTAT 57.390 32.000 0.00 0.00 39.69 2.29
3705 3891 6.111768 ACTTGTCGCAGAAATGAATGTATC 57.888 37.500 0.00 0.00 39.69 2.24
3706 3892 5.877012 ACTTGTCGCAGAAATGAATGTATCT 59.123 36.000 0.00 0.00 39.69 1.98
3707 3893 7.041721 ACTTGTCGCAGAAATGAATGTATCTA 58.958 34.615 0.00 0.00 39.69 1.98
3708 3894 7.223582 ACTTGTCGCAGAAATGAATGTATCTAG 59.776 37.037 0.00 0.00 39.69 2.43
3709 3895 6.805713 TGTCGCAGAAATGAATGTATCTAGA 58.194 36.000 0.00 0.00 39.69 2.43
3710 3896 7.436933 TGTCGCAGAAATGAATGTATCTAGAT 58.563 34.615 10.73 10.73 39.69 1.98
3711 3897 7.383300 TGTCGCAGAAATGAATGTATCTAGATG 59.617 37.037 15.79 0.00 39.69 2.90
3712 3898 7.383572 GTCGCAGAAATGAATGTATCTAGATGT 59.616 37.037 15.79 0.00 39.69 3.06
3713 3899 8.576442 TCGCAGAAATGAATGTATCTAGATGTA 58.424 33.333 15.79 4.44 0.00 2.29
3714 3900 9.363763 CGCAGAAATGAATGTATCTAGATGTAT 57.636 33.333 15.79 6.61 0.00 2.29
3741 3927 9.749340 TTTAGTTCTAGATACATCCATATCCGA 57.251 33.333 0.00 0.00 32.76 4.55
3742 3928 7.873719 AGTTCTAGATACATCCATATCCGAG 57.126 40.000 0.00 0.00 32.76 4.63
3743 3929 7.634718 AGTTCTAGATACATCCATATCCGAGA 58.365 38.462 0.00 0.00 32.76 4.04
3744 3930 7.554835 AGTTCTAGATACATCCATATCCGAGAC 59.445 40.741 0.00 0.00 32.76 3.36
3745 3931 6.958767 TCTAGATACATCCATATCCGAGACA 58.041 40.000 0.00 0.00 32.76 3.41
3746 3932 7.402862 TCTAGATACATCCATATCCGAGACAA 58.597 38.462 0.00 0.00 32.76 3.18
3747 3933 6.522625 AGATACATCCATATCCGAGACAAG 57.477 41.667 0.00 0.00 32.76 3.16
3748 3934 6.013379 AGATACATCCATATCCGAGACAAGT 58.987 40.000 0.00 0.00 32.76 3.16
3749 3935 7.175797 AGATACATCCATATCCGAGACAAGTA 58.824 38.462 0.00 0.00 32.76 2.24
3750 3936 7.670140 AGATACATCCATATCCGAGACAAGTAA 59.330 37.037 0.00 0.00 32.76 2.24
3751 3937 6.672266 ACATCCATATCCGAGACAAGTAAT 57.328 37.500 0.00 0.00 0.00 1.89
3752 3938 7.067496 ACATCCATATCCGAGACAAGTAATT 57.933 36.000 0.00 0.00 0.00 1.40
3753 3939 7.155328 ACATCCATATCCGAGACAAGTAATTC 58.845 38.462 0.00 0.00 0.00 2.17
3754 3940 6.097915 TCCATATCCGAGACAAGTAATTCC 57.902 41.667 0.00 0.00 0.00 3.01
3755 3941 4.923871 CCATATCCGAGACAAGTAATTCCG 59.076 45.833 0.00 0.00 0.00 4.30
3756 3942 5.278808 CCATATCCGAGACAAGTAATTCCGA 60.279 44.000 0.00 0.00 0.00 4.55
3757 3943 4.730949 ATCCGAGACAAGTAATTCCGAA 57.269 40.909 0.00 0.00 0.00 4.30
3758 3944 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
3759 3945 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
3760 3946 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
3761 3947 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
3762 3948 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
3763 3949 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
3764 3950 2.564062 ACAAGTAATTCCGAACGGAGGA 59.436 45.455 15.34 3.20 46.06 3.71
3814 4000 5.220397 CGTAATGGTGCTGTGTAGTATTGTG 60.220 44.000 0.00 0.00 0.00 3.33
4243 4503 4.357918 AGAGACAAACCAACAGTAGCAT 57.642 40.909 0.00 0.00 0.00 3.79
4314 4574 7.326063 GGAGTAAACATCATTTTTCGTTCCTTG 59.674 37.037 0.00 0.00 0.00 3.61
4449 4710 2.489722 GGCTAAGCCCAAAGTTCAGAAG 59.510 50.000 0.00 0.00 44.06 2.85
4564 4825 5.338708 CCATTGTTCCTGTCTGAGGTAATCT 60.339 44.000 0.00 0.00 43.37 2.40
4584 4845 7.735326 AATCTAGTGACCTTACCATGTTAGT 57.265 36.000 0.00 0.00 0.00 2.24
4790 5057 9.618890 AGCAATTCTTAGTAATATCTTGAAGCA 57.381 29.630 0.00 0.00 0.00 3.91
4806 5073 5.921962 TGAAGCAAGCATAGAGTAGAGAA 57.078 39.130 0.00 0.00 0.00 2.87
4845 5112 9.851686 TGGTAGAAATACATCTCATTATGCTTT 57.148 29.630 0.00 0.00 0.00 3.51
5020 5287 2.867109 ACCTCCTGGTGTCTGAATTG 57.133 50.000 0.00 0.00 46.51 2.32
5033 5300 8.420222 TGGTGTCTGAATTGTATTTGTGAAAAT 58.580 29.630 0.00 0.00 0.00 1.82
5034 5301 9.260002 GGTGTCTGAATTGTATTTGTGAAAATT 57.740 29.630 0.00 0.00 0.00 1.82
5176 5444 1.832719 TTCCTCCGTCCGGAATTGCA 61.833 55.000 5.23 0.00 44.66 4.08
5250 5518 2.167693 TGAGCGTCAAGTAATTCCGGAT 59.832 45.455 4.15 0.00 0.00 4.18
5274 5544 6.001460 TGGAGGGAGTGTAACAAATAAACAG 58.999 40.000 0.00 0.00 41.43 3.16
5278 5548 5.318630 GGAGTGTAACAAATAAACAGGGGA 58.681 41.667 0.00 0.00 41.43 4.81
5279 5549 5.414765 GGAGTGTAACAAATAAACAGGGGAG 59.585 44.000 0.00 0.00 41.43 4.30
5281 5551 5.074804 GTGTAACAAATAAACAGGGGAGGT 58.925 41.667 0.00 0.00 36.32 3.85
5282 5552 5.182570 GTGTAACAAATAAACAGGGGAGGTC 59.817 44.000 0.00 0.00 36.32 3.85
5305 5678 8.388103 GGTCGATATTTGGTGCATAATGTATAC 58.612 37.037 0.00 0.00 0.00 1.47
5311 5684 4.447290 TGGTGCATAATGTATACGTTGCT 58.553 39.130 18.67 5.03 0.00 3.91
5363 5736 6.393720 AATGCAGAATATGTTCAAAAACGC 57.606 33.333 4.92 0.00 38.28 4.84
5364 5737 4.864633 TGCAGAATATGTTCAAAAACGCA 58.135 34.783 4.92 1.18 38.28 5.24
5483 5856 2.094803 AGACAGTGAGCTGATTCAGTCG 60.095 50.000 14.90 1.20 45.28 4.18
5503 5876 2.650322 GATTTTTGTATGCCCCTCGGA 58.350 47.619 0.00 0.00 0.00 4.55
5525 5898 7.496591 TCGGAGTAAAATCAAACCATACCATAC 59.503 37.037 0.00 0.00 0.00 2.39
5618 5992 4.560136 TTTGCTCAATTGCTTTCACGTA 57.440 36.364 0.00 0.00 0.00 3.57
5632 6006 5.284660 GCTTTCACGTATTGCTTTGAGATTG 59.715 40.000 0.00 0.00 0.00 2.67
5719 6094 7.129109 ACTCTTTGTATCGTTTACATTGTGG 57.871 36.000 0.00 0.00 0.00 4.17
5745 6120 3.168193 CACGATTACATTTTGGCCGTTC 58.832 45.455 0.00 0.00 0.00 3.95
5796 6171 1.013005 CAGTGTGCTCTGCTTCTCCG 61.013 60.000 0.00 0.00 0.00 4.63
5853 6236 1.741706 CTGTCATGCTTTACCTGCCAG 59.258 52.381 0.00 0.00 0.00 4.85
5886 6272 3.813529 AAATGTCAAGTCAGTAAGCGC 57.186 42.857 0.00 0.00 0.00 5.92
5914 6300 0.617413 AGGGGCAGTGTTCTGATGAG 59.383 55.000 0.00 0.00 43.76 2.90
5980 6366 1.156736 CAGGTTGTCTTTGGCGTAGG 58.843 55.000 0.00 0.00 0.00 3.18
6101 6491 6.260936 ACAAGCATGCTGTTATATAGTCCAAC 59.739 38.462 23.48 0.00 0.00 3.77
6109 6499 8.946085 TGCTGTTATATAGTCCAACAAAGAAAG 58.054 33.333 0.00 0.00 32.16 2.62
6130 6520 7.805071 AGAAAGTCAAGAATGCAAATAAACTCG 59.195 33.333 0.00 0.00 0.00 4.18
6140 6530 8.895932 AATGCAAATAAACTCGTTATCTGTTC 57.104 30.769 0.00 0.00 30.74 3.18
6150 6540 6.644347 ACTCGTTATCTGTTCTTCCATTGAT 58.356 36.000 0.00 0.00 0.00 2.57
6151 6541 7.106239 ACTCGTTATCTGTTCTTCCATTGATT 58.894 34.615 0.00 0.00 0.00 2.57
6192 6582 7.671302 ACATTAGAGTTGTCAGTTATCACAGT 58.329 34.615 0.00 0.00 0.00 3.55
6193 6583 8.803235 ACATTAGAGTTGTCAGTTATCACAGTA 58.197 33.333 0.00 0.00 0.00 2.74
6194 6584 9.809096 CATTAGAGTTGTCAGTTATCACAGTAT 57.191 33.333 0.00 0.00 0.00 2.12
6377 6779 2.677003 CGGCACCATCCACGACAAC 61.677 63.158 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 4.082136 AGGAAAAGTTACAACCGTTTTGCA 60.082 37.500 11.10 0.00 33.93 4.08
42 43 4.426416 AGGAAAAGTTACAACCGTTTTGC 58.574 39.130 4.13 4.13 32.25 3.68
155 157 2.517402 AACCGCGGCACTGGAAAA 60.517 55.556 28.58 0.00 0.00 2.29
205 207 3.999285 AGGAGGACCGAGGTGCCT 61.999 66.667 10.21 10.86 41.83 4.75
222 225 2.970324 GCGACAGGCCAAACGACA 60.970 61.111 17.03 0.00 34.80 4.35
258 261 1.528309 CTCCTCCGCCTCCTCTCTC 60.528 68.421 0.00 0.00 0.00 3.20
269 272 1.398692 CCTCTCTTCCTTCTCCTCCG 58.601 60.000 0.00 0.00 0.00 4.63
327 330 1.447317 GCCCATGGATGTAGGTTGCG 61.447 60.000 15.22 0.00 0.00 4.85
389 393 1.356738 TCTACCCGTCTCCTCCTTCAA 59.643 52.381 0.00 0.00 0.00 2.69
390 394 0.997363 TCTACCCGTCTCCTCCTTCA 59.003 55.000 0.00 0.00 0.00 3.02
391 395 1.212441 TCTCTACCCGTCTCCTCCTTC 59.788 57.143 0.00 0.00 0.00 3.46
392 396 1.296984 TCTCTACCCGTCTCCTCCTT 58.703 55.000 0.00 0.00 0.00 3.36
393 397 1.144093 CATCTCTACCCGTCTCCTCCT 59.856 57.143 0.00 0.00 0.00 3.69
396 400 0.820074 CGCATCTCTACCCGTCTCCT 60.820 60.000 0.00 0.00 0.00 3.69
398 402 1.655329 CCGCATCTCTACCCGTCTC 59.345 63.158 0.00 0.00 0.00 3.36
399 403 2.491022 GCCGCATCTCTACCCGTCT 61.491 63.158 0.00 0.00 0.00 4.18
401 405 3.900892 CGCCGCATCTCTACCCGT 61.901 66.667 0.00 0.00 0.00 5.28
402 406 3.825833 GACGCCGCATCTCTACCCG 62.826 68.421 0.00 0.00 0.00 5.28
438 442 0.886490 CTCGCAGCCTTCAACCTTGT 60.886 55.000 0.00 0.00 0.00 3.16
440 444 0.321122 CTCTCGCAGCCTTCAACCTT 60.321 55.000 0.00 0.00 0.00 3.50
456 460 0.252197 GTATGAAACGGGGCCACTCT 59.748 55.000 1.96 0.00 0.00 3.24
469 473 2.823984 ACACCAAACGACACGTATGAA 58.176 42.857 0.00 0.00 39.99 2.57
472 476 5.574055 CAGTAATACACCAAACGACACGTAT 59.426 40.000 0.00 0.00 39.99 3.06
492 496 2.126071 GCACGCTTCGCCTCAGTA 60.126 61.111 0.00 0.00 0.00 2.74
515 519 1.669760 GAACATTGGGTCGGACGCA 60.670 57.895 22.12 22.12 39.39 5.24
540 544 2.203280 CTGTTTGGGGACGGTGCA 60.203 61.111 1.14 0.00 0.00 4.57
543 547 0.466739 GGAAACTGTTTGGGGACGGT 60.467 55.000 11.03 0.00 40.76 4.83
548 552 5.862678 TTAAGAAAGGAAACTGTTTGGGG 57.137 39.130 11.03 0.00 42.68 4.96
566 570 9.736023 GTAGATTAGGTTTTCATGGCATTTAAG 57.264 33.333 0.00 0.00 0.00 1.85
575 579 4.777463 ACCCCGTAGATTAGGTTTTCATG 58.223 43.478 0.00 0.00 0.00 3.07
576 580 6.564557 TTACCCCGTAGATTAGGTTTTCAT 57.435 37.500 0.00 0.00 33.70 2.57
579 583 6.359804 GGAATTACCCCGTAGATTAGGTTTT 58.640 40.000 0.00 0.00 33.70 2.43
581 585 5.557576 GGAATTACCCCGTAGATTAGGTT 57.442 43.478 0.00 0.00 33.70 3.50
629 633 5.046376 TCTCAGCTCACATGGATTCAGTTAA 60.046 40.000 0.00 0.00 0.00 2.01
762 774 2.678580 TGTCCGACGGATGCTCCA 60.679 61.111 21.53 10.07 35.91 3.86
772 784 0.732880 CTCCACATCGTGTGTCCGAC 60.733 60.000 14.25 0.00 46.45 4.79
781 793 1.478510 CTACCTTGCTCTCCACATCGT 59.521 52.381 0.00 0.00 0.00 3.73
782 794 1.478510 ACTACCTTGCTCTCCACATCG 59.521 52.381 0.00 0.00 0.00 3.84
787 799 3.170991 ACTGTACTACCTTGCTCTCCA 57.829 47.619 0.00 0.00 0.00 3.86
837 849 4.614993 CGAACCGCAATCCATACACTTTTT 60.615 41.667 0.00 0.00 0.00 1.94
838 850 3.119990 CGAACCGCAATCCATACACTTTT 60.120 43.478 0.00 0.00 0.00 2.27
897 942 3.044305 GCGGATGCTATGGGCGAC 61.044 66.667 0.00 0.00 45.43 5.19
1076 1155 4.162690 GTGGCTACGCAGGGGAGG 62.163 72.222 0.00 0.00 0.00 4.30
1082 1161 4.514577 CGGGAGGTGGCTACGCAG 62.515 72.222 0.00 0.00 0.00 5.18
1172 1253 4.112634 GCACTAAATCTGTATCGACTGCA 58.887 43.478 0.00 0.00 0.00 4.41
1175 1256 3.630769 TCCGCACTAAATCTGTATCGACT 59.369 43.478 0.00 0.00 0.00 4.18
1184 1265 2.432510 AGCTAGCTTCCGCACTAAATCT 59.567 45.455 12.68 0.00 39.10 2.40
1210 1291 0.821517 TTCTCGCGCCAGGATTTCTA 59.178 50.000 0.00 0.00 0.00 2.10
1212 1293 1.432270 CCTTCTCGCGCCAGGATTTC 61.432 60.000 11.45 0.00 0.00 2.17
1232 1313 2.399396 AATTTCAGCAACCAACGACG 57.601 45.000 0.00 0.00 0.00 5.12
1240 1321 4.506288 ACCGCAAAACTAAATTTCAGCAAC 59.494 37.500 0.00 0.00 33.19 4.17
1249 1330 2.350388 CGCTGACACCGCAAAACTAAAT 60.350 45.455 0.00 0.00 0.00 1.40
1294 1377 2.414293 GGTCACGCGATATAGCTAGTGG 60.414 54.545 15.93 0.00 32.09 4.00
1295 1378 2.225727 TGGTCACGCGATATAGCTAGTG 59.774 50.000 15.93 7.69 34.40 2.74
1342 1435 4.151883 ACCAAGCATTGTATGTTGGAAGT 58.848 39.130 18.91 4.05 46.99 3.01
1345 1438 4.832266 AGAAACCAAGCATTGTATGTTGGA 59.168 37.500 18.91 0.00 46.99 3.53
1347 1440 5.801947 GCTAGAAACCAAGCATTGTATGTTG 59.198 40.000 0.00 0.00 46.99 3.33
1354 1447 3.829948 CACTGCTAGAAACCAAGCATTG 58.170 45.455 0.00 0.00 46.96 2.82
1372 1465 5.583457 AGCTTCGTTGTAAGTTTTGTACACT 59.417 36.000 0.00 0.00 31.27 3.55
1376 1470 5.697633 CCCTAGCTTCGTTGTAAGTTTTGTA 59.302 40.000 0.00 0.00 0.00 2.41
1405 1499 0.445436 CAAGACAGCAAGCTTAGCCG 59.555 55.000 14.63 9.12 0.00 5.52
1417 1512 3.549625 GCTCCTGCAGAAAAACAAGACAG 60.550 47.826 17.39 0.00 39.41 3.51
1509 1606 1.659098 GCAGAACCAAATACGGACTCG 59.341 52.381 0.00 0.00 43.02 4.18
1549 1646 7.978982 AGTTCAGTTAGCAATCACATTACATC 58.021 34.615 0.00 0.00 0.00 3.06
1617 1717 8.308207 ACCTTCAGAAGTAGATTCTTAGTCAAC 58.692 37.037 9.41 0.00 46.49 3.18
1623 1723 8.540507 AGCATACCTTCAGAAGTAGATTCTTA 57.459 34.615 9.41 0.00 46.49 2.10
1855 1961 7.869800 ACAGAACTGCTCATTTTAGAGAAAAG 58.130 34.615 1.46 0.00 37.94 2.27
1937 2043 1.811558 GCAGACCTGAAGCACTTGACA 60.812 52.381 0.47 0.00 0.00 3.58
2018 2124 2.238646 CCAGGGAAGTACTTATGCCACA 59.761 50.000 8.42 0.00 0.00 4.17
2282 2389 9.294614 CTTATATTAGTTTACGGAGGGAGTACT 57.705 37.037 0.00 0.00 0.00 2.73
2283 2390 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
2284 2391 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
2285 2392 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
2286 2393 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
2287 2394 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
2288 2395 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
2289 2396 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
2290 2397 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
2291 2398 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
2292 2399 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
2306 2413 9.570488 CACTACTTTAGTATTCTAAACGCTCTT 57.430 33.333 0.76 0.00 40.05 2.85
2307 2414 8.954350 TCACTACTTTAGTATTCTAAACGCTCT 58.046 33.333 0.76 0.00 40.05 4.09
2308 2415 9.733219 ATCACTACTTTAGTATTCTAAACGCTC 57.267 33.333 0.76 0.00 40.05 5.03
2309 2416 9.733219 GATCACTACTTTAGTATTCTAAACGCT 57.267 33.333 0.76 0.00 40.05 5.07
2310 2417 9.733219 AGATCACTACTTTAGTATTCTAAACGC 57.267 33.333 0.76 0.00 40.05 4.84
2316 2423 9.733219 GCGTTTAGATCACTACTTTAGTATTCT 57.267 33.333 0.00 0.00 37.23 2.40
2317 2424 9.733219 AGCGTTTAGATCACTACTTTAGTATTC 57.267 33.333 0.00 0.00 37.23 1.75
2318 2425 9.733219 GAGCGTTTAGATCACTACTTTAGTATT 57.267 33.333 0.00 0.00 37.23 1.89
2319 2426 9.122779 AGAGCGTTTAGATCACTACTTTAGTAT 57.877 33.333 0.00 0.00 37.82 2.12
2320 2427 8.503458 AGAGCGTTTAGATCACTACTTTAGTA 57.497 34.615 0.00 0.00 37.82 1.82
2321 2428 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
2322 2429 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
2337 2444 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
2338 2445 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
2339 2446 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
2340 2447 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
2341 2448 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
2351 2458 9.537852 TCAATTTAGTACTCCCTCTGTAAACTA 57.462 33.333 0.00 0.00 0.00 2.24
2352 2459 8.312564 GTCAATTTAGTACTCCCTCTGTAAACT 58.687 37.037 0.00 0.00 0.00 2.66
2353 2460 8.312564 AGTCAATTTAGTACTCCCTCTGTAAAC 58.687 37.037 0.00 0.00 0.00 2.01
2354 2461 8.431910 AGTCAATTTAGTACTCCCTCTGTAAA 57.568 34.615 0.00 0.00 0.00 2.01
2355 2462 8.431910 AAGTCAATTTAGTACTCCCTCTGTAA 57.568 34.615 0.00 0.00 0.00 2.41
2356 2463 9.537852 TTAAGTCAATTTAGTACTCCCTCTGTA 57.462 33.333 0.00 0.00 0.00 2.74
2357 2464 6.936968 AAGTCAATTTAGTACTCCCTCTGT 57.063 37.500 0.00 0.00 0.00 3.41
2358 2465 9.319143 CATTAAGTCAATTTAGTACTCCCTCTG 57.681 37.037 0.00 0.00 0.00 3.35
2359 2466 7.988028 GCATTAAGTCAATTTAGTACTCCCTCT 59.012 37.037 0.00 0.00 0.00 3.69
2360 2467 7.769044 TGCATTAAGTCAATTTAGTACTCCCTC 59.231 37.037 0.00 0.00 0.00 4.30
2361 2468 7.630082 TGCATTAAGTCAATTTAGTACTCCCT 58.370 34.615 0.00 0.00 0.00 4.20
2362 2469 7.859325 TGCATTAAGTCAATTTAGTACTCCC 57.141 36.000 0.00 0.00 0.00 4.30
2693 2817 3.822940 TGCTCATGATGACATAATGGCA 58.177 40.909 18.08 18.08 41.29 4.92
2863 2987 9.832445 CAGTAACAACATATTATACTTGGGAGT 57.168 33.333 0.00 0.00 39.97 3.85
3570 3695 2.086869 CAACAGGCCAGGTACAATGAG 58.913 52.381 5.01 0.00 0.00 2.90
3664 3850 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
3665 3851 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
3666 3852 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
3667 3853 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
3668 3854 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
3669 3855 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
3670 3856 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
3671 3857 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
3672 3858 2.991190 TCTGCGACAAGTAATTCCGAAC 59.009 45.455 0.00 0.00 0.00 3.95
3673 3859 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
3674 3860 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
3675 3861 4.092821 TCATTTCTGCGACAAGTAATTCCG 59.907 41.667 0.00 0.00 0.00 4.30
3676 3862 5.545658 TCATTTCTGCGACAAGTAATTCC 57.454 39.130 0.00 0.00 0.00 3.01
3677 3863 7.023575 ACATTCATTTCTGCGACAAGTAATTC 58.976 34.615 0.00 0.00 0.00 2.17
3678 3864 6.913170 ACATTCATTTCTGCGACAAGTAATT 58.087 32.000 0.00 0.00 0.00 1.40
3679 3865 6.500684 ACATTCATTTCTGCGACAAGTAAT 57.499 33.333 0.00 0.00 0.00 1.89
3680 3866 5.940192 ACATTCATTTCTGCGACAAGTAA 57.060 34.783 0.00 0.00 0.00 2.24
3681 3867 7.041721 AGATACATTCATTTCTGCGACAAGTA 58.958 34.615 0.00 0.00 0.00 2.24
3682 3868 5.877012 AGATACATTCATTTCTGCGACAAGT 59.123 36.000 0.00 0.00 0.00 3.16
3683 3869 6.355397 AGATACATTCATTTCTGCGACAAG 57.645 37.500 0.00 0.00 0.00 3.16
3684 3870 7.264947 TCTAGATACATTCATTTCTGCGACAA 58.735 34.615 0.00 0.00 0.00 3.18
3685 3871 6.805713 TCTAGATACATTCATTTCTGCGACA 58.194 36.000 0.00 0.00 0.00 4.35
3686 3872 7.383572 ACATCTAGATACATTCATTTCTGCGAC 59.616 37.037 4.54 0.00 0.00 5.19
3687 3873 7.436933 ACATCTAGATACATTCATTTCTGCGA 58.563 34.615 4.54 0.00 0.00 5.10
3688 3874 7.649370 ACATCTAGATACATTCATTTCTGCG 57.351 36.000 4.54 0.00 0.00 5.18
3715 3901 9.749340 TCGGATATGGATGTATCTAGAACTAAA 57.251 33.333 0.00 0.00 32.78 1.85
3716 3902 9.397280 CTCGGATATGGATGTATCTAGAACTAA 57.603 37.037 0.00 0.00 32.78 2.24
3717 3903 8.769359 TCTCGGATATGGATGTATCTAGAACTA 58.231 37.037 0.00 0.00 32.78 2.24
3718 3904 7.554835 GTCTCGGATATGGATGTATCTAGAACT 59.445 40.741 0.00 0.00 31.35 3.01
3719 3905 7.337184 TGTCTCGGATATGGATGTATCTAGAAC 59.663 40.741 0.00 0.00 31.35 3.01
3720 3906 7.402862 TGTCTCGGATATGGATGTATCTAGAA 58.597 38.462 0.00 0.00 31.35 2.10
3721 3907 6.958767 TGTCTCGGATATGGATGTATCTAGA 58.041 40.000 0.00 0.00 32.78 2.43
3722 3908 7.338196 ACTTGTCTCGGATATGGATGTATCTAG 59.662 40.741 0.00 0.00 32.78 2.43
3723 3909 7.175797 ACTTGTCTCGGATATGGATGTATCTA 58.824 38.462 0.00 0.00 32.78 1.98
3724 3910 6.013379 ACTTGTCTCGGATATGGATGTATCT 58.987 40.000 0.00 0.00 32.78 1.98
3725 3911 6.274157 ACTTGTCTCGGATATGGATGTATC 57.726 41.667 0.00 0.00 0.00 2.24
3726 3912 7.776618 TTACTTGTCTCGGATATGGATGTAT 57.223 36.000 0.00 0.00 0.00 2.29
3727 3913 7.776618 ATTACTTGTCTCGGATATGGATGTA 57.223 36.000 0.00 0.00 0.00 2.29
3728 3914 6.672266 ATTACTTGTCTCGGATATGGATGT 57.328 37.500 0.00 0.00 0.00 3.06
3729 3915 6.591834 GGAATTACTTGTCTCGGATATGGATG 59.408 42.308 0.00 0.00 0.00 3.51
3730 3916 6.572509 CGGAATTACTTGTCTCGGATATGGAT 60.573 42.308 0.00 0.00 0.00 3.41
3731 3917 5.278808 CGGAATTACTTGTCTCGGATATGGA 60.279 44.000 0.00 0.00 0.00 3.41
3732 3918 4.923871 CGGAATTACTTGTCTCGGATATGG 59.076 45.833 0.00 0.00 0.00 2.74
3733 3919 5.769367 TCGGAATTACTTGTCTCGGATATG 58.231 41.667 0.00 0.00 0.00 1.78
3734 3920 6.214399 GTTCGGAATTACTTGTCTCGGATAT 58.786 40.000 0.00 0.00 0.00 1.63
3735 3921 5.585390 GTTCGGAATTACTTGTCTCGGATA 58.415 41.667 0.00 0.00 0.00 2.59
3736 3922 4.430908 GTTCGGAATTACTTGTCTCGGAT 58.569 43.478 0.00 0.00 0.00 4.18
3737 3923 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
3738 3924 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
3739 3925 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
3740 3926 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
3741 3927 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
3742 3928 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
3743 3929 2.564062 TCCTCCGTTCGGAATTACTTGT 59.436 45.455 14.79 0.00 33.41 3.16
3744 3930 3.241067 TCCTCCGTTCGGAATTACTTG 57.759 47.619 14.79 1.97 33.41 3.16
3745 3931 3.260128 ACTTCCTCCGTTCGGAATTACTT 59.740 43.478 14.79 0.00 39.64 2.24
3746 3932 2.830321 ACTTCCTCCGTTCGGAATTACT 59.170 45.455 14.79 0.00 39.64 2.24
3747 3933 3.242549 ACTTCCTCCGTTCGGAATTAC 57.757 47.619 14.79 0.00 39.64 1.89
3748 3934 4.019174 AGTACTTCCTCCGTTCGGAATTA 58.981 43.478 14.79 1.22 39.64 1.40
3749 3935 2.830321 AGTACTTCCTCCGTTCGGAATT 59.170 45.455 14.79 0.00 39.64 2.17
3750 3936 2.454538 AGTACTTCCTCCGTTCGGAAT 58.545 47.619 14.79 2.09 39.64 3.01
3751 3937 1.915141 AGTACTTCCTCCGTTCGGAA 58.085 50.000 14.79 0.00 38.18 4.30
3752 3938 2.787473 TAGTACTTCCTCCGTTCGGA 57.213 50.000 13.34 13.34 0.00 4.55
3753 3939 3.855689 TTTAGTACTTCCTCCGTTCGG 57.144 47.619 0.00 4.74 0.00 4.30
3776 3962 5.065988 GCACCATTACGTTTCTCCATGTTAT 59.934 40.000 0.00 0.00 0.00 1.89
3814 4000 7.488150 TGAGTACAATGACGAAGATGTTACATC 59.512 37.037 16.80 16.80 0.00 3.06
4314 4574 7.755373 GGATGTCTAAAAGCTTGGATAAACAAC 59.245 37.037 0.00 0.00 0.00 3.32
4449 4710 1.073923 TCTGAACTTTCTGCCCCCTTC 59.926 52.381 0.00 0.00 0.00 3.46
4564 4825 6.869913 CGAAAACTAACATGGTAAGGTCACTA 59.130 38.462 0.00 0.00 0.00 2.74
4584 4845 3.146066 GGGCAGGCATCATATACGAAAA 58.854 45.455 0.00 0.00 0.00 2.29
4806 5073 9.927081 ATGTATTTCTACCAGGAGATTCAATTT 57.073 29.630 0.00 0.00 0.00 1.82
4845 5112 5.839517 ACATTGGGATTTTTCCATGGAAA 57.160 34.783 31.75 31.75 41.69 3.13
5020 5287 9.423061 ACCAAATGAGCTAATTTTCACAAATAC 57.577 29.630 6.28 0.00 31.89 1.89
5033 5300 2.177394 TGCGACACCAAATGAGCTAA 57.823 45.000 0.00 0.00 36.76 3.09
5034 5301 2.076100 CTTGCGACACCAAATGAGCTA 58.924 47.619 0.00 0.00 36.76 3.32
5035 5302 0.877071 CTTGCGACACCAAATGAGCT 59.123 50.000 0.00 0.00 36.76 4.09
5036 5303 0.874390 TCTTGCGACACCAAATGAGC 59.126 50.000 0.00 0.00 36.50 4.26
5037 5304 4.944962 TTATCTTGCGACACCAAATGAG 57.055 40.909 0.00 0.00 0.00 2.90
5114 5381 5.378230 AGCATTCTGGATCAGGTTAATCA 57.622 39.130 0.00 0.00 31.51 2.57
5176 5444 1.028330 CACATCCAGTTGAGCGCCAT 61.028 55.000 2.29 0.00 0.00 4.40
5250 5518 5.942961 TGTTTATTTGTTACACTCCCTCCA 58.057 37.500 0.00 0.00 0.00 3.86
5260 5530 4.393990 CGACCTCCCCTGTTTATTTGTTAC 59.606 45.833 0.00 0.00 0.00 2.50
5274 5544 1.814248 GCACCAAATATCGACCTCCCC 60.814 57.143 0.00 0.00 0.00 4.81
5278 5548 5.376625 ACATTATGCACCAAATATCGACCT 58.623 37.500 0.00 0.00 0.00 3.85
5279 5549 5.689383 ACATTATGCACCAAATATCGACC 57.311 39.130 0.00 0.00 0.00 4.79
5281 5551 7.815549 ACGTATACATTATGCACCAAATATCGA 59.184 33.333 3.32 0.00 0.00 3.59
5282 5552 7.959733 ACGTATACATTATGCACCAAATATCG 58.040 34.615 3.32 0.00 0.00 2.92
5311 5684 5.105957 ACATTTGCATTAGACATTTGCCGTA 60.106 36.000 0.00 0.00 35.51 4.02
5385 5758 1.105457 GCATGGTATCAAAGCCAGCA 58.895 50.000 0.00 0.00 38.27 4.41
5483 5856 2.618709 CTCCGAGGGGCATACAAAAATC 59.381 50.000 0.00 0.00 0.00 2.17
5618 5992 2.273370 CGCAGCAATCTCAAAGCAAT 57.727 45.000 0.00 0.00 0.00 3.56
5719 6094 2.874849 CCAAAATGTAATCGTGCCACC 58.125 47.619 0.00 0.00 0.00 4.61
5796 6171 0.393808 ACGGCAATGGTGGATGTACC 60.394 55.000 0.00 0.00 41.24 3.34
5853 6236 5.348164 ACTTGACATTTTGTTGGCTGTTAC 58.652 37.500 0.00 0.00 0.00 2.50
5914 6300 2.257286 ATCGATGCCGTGCTTGCAAC 62.257 55.000 0.00 0.00 42.92 4.17
5980 6366 4.864334 CAGCCGGGATGCCAGTCC 62.864 72.222 2.18 0.00 37.56 3.85
6101 6491 9.853921 GTTTATTTGCATTCTTGACTTTCTTTG 57.146 29.630 0.00 0.00 0.00 2.77
6109 6499 8.895932 ATAACGAGTTTATTTGCATTCTTGAC 57.104 30.769 0.00 0.00 0.00 3.18
6158 6548 7.176490 ACTGACAACTCTAATGTACTCCTAGT 58.824 38.462 0.00 0.00 0.00 2.57
6159 6549 7.633193 ACTGACAACTCTAATGTACTCCTAG 57.367 40.000 0.00 0.00 0.00 3.02
6192 6582 5.068723 CCTTCTTCGCCTAACAAGACCTATA 59.931 44.000 0.00 0.00 0.00 1.31
6193 6583 4.141914 CCTTCTTCGCCTAACAAGACCTAT 60.142 45.833 0.00 0.00 0.00 2.57
6194 6584 3.194968 CCTTCTTCGCCTAACAAGACCTA 59.805 47.826 0.00 0.00 0.00 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.