Multiple sequence alignment - TraesCS6A01G328800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G328800 chr6A 100.000 5038 0 0 1 5038 562379029 562373992 0.000000e+00 9304.0
1 TraesCS6A01G328800 chr6A 89.011 273 27 3 6 277 430923029 430922759 8.080000e-88 335.0
2 TraesCS6A01G328800 chr6A 97.030 101 2 1 4938 5038 562297252 562297351 8.670000e-38 169.0
3 TraesCS6A01G328800 chr6D 86.284 2180 163 66 5 2089 418743779 418741641 0.000000e+00 2244.0
4 TraesCS6A01G328800 chr6D 91.447 912 66 5 2290 3195 418741590 418740685 0.000000e+00 1242.0
5 TraesCS6A01G328800 chr6D 86.622 1039 78 25 3288 4293 418740531 418739521 0.000000e+00 1092.0
6 TraesCS6A01G328800 chr6D 84.106 302 35 9 893 1190 418688548 418688840 3.840000e-71 279.0
7 TraesCS6A01G328800 chr6D 95.732 164 7 0 4765 4928 418739162 418738999 1.080000e-66 265.0
8 TraesCS6A01G328800 chr6D 84.848 231 34 1 274 504 242988179 242987950 1.090000e-56 231.0
9 TraesCS6A01G328800 chr6D 85.789 190 21 5 4352 4541 112815914 112815731 3.980000e-46 196.0
10 TraesCS6A01G328800 chr6D 89.855 138 6 6 4631 4765 418739261 418739129 2.410000e-38 171.0
11 TraesCS6A01G328800 chr6B 91.196 1329 48 31 802 2113 631203821 631202545 0.000000e+00 1742.0
12 TraesCS6A01G328800 chr6B 92.706 1042 26 23 807 1839 630846579 630847579 0.000000e+00 1458.0
13 TraesCS6A01G328800 chr6B 93.909 903 48 5 2473 3372 630848083 630848981 0.000000e+00 1356.0
14 TraesCS6A01G328800 chr6B 91.466 914 51 10 3384 4291 630849060 630849952 0.000000e+00 1230.0
15 TraesCS6A01G328800 chr6B 87.312 930 68 21 3549 4441 631201262 631200346 0.000000e+00 1018.0
16 TraesCS6A01G328800 chr6B 88.552 725 56 10 2471 3195 631202447 631201750 0.000000e+00 854.0
17 TraesCS6A01G328800 chr6B 86.147 231 27 4 807 1034 630777859 630778087 1.400000e-60 244.0
18 TraesCS6A01G328800 chr6B 82.609 230 28 6 3288 3508 631201606 631201380 5.150000e-45 193.0
19 TraesCS6A01G328800 chr6B 95.050 101 5 0 4938 5038 631198915 631199015 5.220000e-35 159.0
20 TraesCS6A01G328800 chr6B 88.158 76 4 1 4864 4934 630865113 630865188 8.990000e-13 86.1
21 TraesCS6A01G328800 chr6B 92.857 56 2 1 4538 4591 630850021 630850076 4.180000e-11 80.5
22 TraesCS6A01G328800 chr7D 85.984 635 86 3 1151 1785 120321643 120322274 0.000000e+00 676.0
23 TraesCS6A01G328800 chr7D 84.038 213 26 7 4338 4550 181008032 181008236 1.110000e-46 198.0
24 TraesCS6A01G328800 chr7D 92.593 135 10 0 2333 2467 190386537 190386403 1.430000e-45 195.0
25 TraesCS6A01G328800 chr7D 83.962 212 22 9 4335 4541 449448649 449448853 5.150000e-45 193.0
26 TraesCS6A01G328800 chr7A 86.526 616 80 3 1171 1785 125262866 125263479 0.000000e+00 675.0
27 TraesCS6A01G328800 chr7A 87.591 274 30 4 5 277 374020302 374020032 1.050000e-81 315.0
28 TraesCS6A01G328800 chr7B 85.512 635 89 3 1151 1785 81691114 81691745 0.000000e+00 660.0
29 TraesCS6A01G328800 chr7B 86.611 239 28 4 274 509 195249215 195249452 1.390000e-65 261.0
30 TraesCS6A01G328800 chr4D 88.364 275 30 2 1 274 474450156 474450429 3.760000e-86 329.0
31 TraesCS6A01G328800 chr4D 90.608 181 12 4 4353 4533 336131579 336131404 8.430000e-58 235.0
32 TraesCS6A01G328800 chr4D 97.368 38 1 0 2133 2170 140905273 140905310 1.170000e-06 65.8
33 TraesCS6A01G328800 chr1A 88.087 277 29 4 2 277 377452769 377453042 4.860000e-85 326.0
34 TraesCS6A01G328800 chr5D 87.197 289 30 6 5 288 512213168 512212882 6.290000e-84 322.0
35 TraesCS6A01G328800 chr4A 87.226 274 33 2 5 277 583917750 583917478 1.360000e-80 311.0
36 TraesCS6A01G328800 chr3B 87.226 274 33 2 5 277 102970787 102970515 1.360000e-80 311.0
37 TraesCS6A01G328800 chr3B 84.545 220 27 4 274 491 373287106 373286892 1.420000e-50 211.0
38 TraesCS6A01G328800 chr2B 86.813 273 34 2 6 277 180656709 180656980 2.280000e-78 303.0
39 TraesCS6A01G328800 chr2B 84.932 219 28 5 276 491 477150714 477150930 3.050000e-52 217.0
40 TraesCS6A01G328800 chr2D 85.281 231 27 7 274 500 476342622 476342395 1.090000e-56 231.0
41 TraesCS6A01G328800 chr2D 88.108 185 16 3 4352 4536 533780292 533780114 1.100000e-51 215.0
42 TraesCS6A01G328800 chr2D 86.294 197 18 7 4353 4548 198728723 198728535 6.610000e-49 206.0
43 TraesCS6A01G328800 chr2A 84.615 234 29 6 274 504 525029303 525029074 5.070000e-55 226.0
44 TraesCS6A01G328800 chr2A 87.310 197 19 5 4352 4548 216837903 216837713 2.360000e-53 220.0
45 TraesCS6A01G328800 chr1B 82.540 252 42 2 276 526 269210641 269210891 2.360000e-53 220.0
46 TraesCS6A01G328800 chr1D 84.000 225 34 2 274 497 390396119 390395896 1.100000e-51 215.0
47 TraesCS6A01G328800 chr1D 85.864 191 19 6 4342 4530 252487324 252487508 3.980000e-46 196.0
48 TraesCS6A01G328800 chr3D 87.166 187 15 6 4344 4530 431291622 431291799 2.380000e-48 204.0
49 TraesCS6A01G328800 chr3D 89.630 135 14 0 2333 2467 551663684 551663550 6.710000e-39 172.0
50 TraesCS6A01G328800 chr3A 93.651 63 4 0 2405 2467 496376459 496376397 1.490000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G328800 chr6A 562373992 562379029 5037 True 9304.000 9304 100.00000 1 5038 1 chr6A.!!$R2 5037
1 TraesCS6A01G328800 chr6D 418738999 418743779 4780 True 1002.800 2244 89.98800 5 4928 5 chr6D.!!$R3 4923
2 TraesCS6A01G328800 chr6B 630846579 630850076 3497 False 1031.125 1458 92.73450 807 4591 4 chr6B.!!$F4 3784
3 TraesCS6A01G328800 chr6B 631200346 631203821 3475 True 951.750 1742 87.41725 802 4441 4 chr6B.!!$R1 3639
4 TraesCS6A01G328800 chr7D 120321643 120322274 631 False 676.000 676 85.98400 1151 1785 1 chr7D.!!$F1 634
5 TraesCS6A01G328800 chr7A 125262866 125263479 613 False 675.000 675 86.52600 1171 1785 1 chr7A.!!$F1 614
6 TraesCS6A01G328800 chr7B 81691114 81691745 631 False 660.000 660 85.51200 1151 1785 1 chr7B.!!$F1 634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
476 478 0.392706 ACGATGTCAAGCCTGTCACA 59.607 50.0 0.0 0.0 0.00 3.58 F
2183 2305 0.033228 CGGATGCACTCCCTCTGATC 59.967 60.0 8.9 0.0 41.49 2.92 F
2184 2306 0.396060 GGATGCACTCCCTCTGATCC 59.604 60.0 0.0 0.0 38.19 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2228 2350 0.032813 ACTCCCTCCGTCCCGAATTA 60.033 55.0 0.00 0.0 0.00 1.40 R
3301 3621 0.520404 CAGTGTCAGTTGCATGGAGC 59.480 55.0 0.00 0.0 45.96 4.70 R
4170 4670 2.015736 AGAACAAGGAGCTGCATACG 57.984 50.0 8.35 0.0 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.007644 CTGGGCACACTCCAGCGA 62.008 66.667 0.00 0.00 44.29 4.93
25 26 1.089920 GCACACTCCAGCGATGAATT 58.910 50.000 0.06 0.00 0.00 2.17
30 31 2.098607 CACTCCAGCGATGAATTGCAAT 59.901 45.455 5.99 5.99 39.70 3.56
32 33 2.356695 CTCCAGCGATGAATTGCAATCA 59.643 45.455 13.38 12.57 39.70 2.57
40 41 4.201881 CGATGAATTGCAATCAAGAGAGCA 60.202 41.667 13.38 2.12 35.37 4.26
84 85 2.223803 ACTTTGACACAACCAACCCA 57.776 45.000 0.00 0.00 0.00 4.51
94 95 4.080638 ACACAACCAACCCATTGTTCAAAT 60.081 37.500 0.00 0.00 36.92 2.32
95 96 4.272991 CACAACCAACCCATTGTTCAAATG 59.727 41.667 0.00 0.00 36.92 2.32
98 99 3.243704 ACCAACCCATTGTTCAAATGTCG 60.244 43.478 0.00 0.00 34.00 4.35
116 117 3.743636 CCAATTCCGGCGGCGTTT 61.744 61.111 30.09 17.06 0.00 3.60
117 118 2.202427 CAATTCCGGCGGCGTTTC 60.202 61.111 30.09 0.00 0.00 2.78
118 119 3.436924 AATTCCGGCGGCGTTTCC 61.437 61.111 30.09 0.00 0.00 3.13
137 138 4.054780 TCCGTATGGCTAGACATGTTTC 57.945 45.455 21.96 7.89 34.14 2.78
139 140 3.431626 CCGTATGGCTAGACATGTTTCCA 60.432 47.826 21.96 2.42 32.39 3.53
141 142 4.034048 CGTATGGCTAGACATGTTTCCAAC 59.966 45.833 21.96 8.27 32.39 3.77
146 147 3.998341 GCTAGACATGTTTCCAACCGTAA 59.002 43.478 0.00 0.00 0.00 3.18
148 149 5.220605 GCTAGACATGTTTCCAACCGTAATC 60.221 44.000 0.00 0.00 0.00 1.75
149 150 3.682858 AGACATGTTTCCAACCGTAATCG 59.317 43.478 0.00 0.00 0.00 3.34
152 153 3.663995 TGTTTCCAACCGTAATCGAGA 57.336 42.857 0.00 0.00 39.71 4.04
162 163 2.102588 CCGTAATCGAGAAGGGGTGATT 59.897 50.000 0.00 0.00 39.71 2.57
164 165 2.717639 AATCGAGAAGGGGTGATTGG 57.282 50.000 0.00 0.00 30.31 3.16
227 228 6.073331 GGAAAGATTGGCTTCTCATCTTATCG 60.073 42.308 0.00 0.00 35.24 2.92
228 229 5.798125 AGATTGGCTTCTCATCTTATCGA 57.202 39.130 0.00 0.00 0.00 3.59
230 231 6.222389 AGATTGGCTTCTCATCTTATCGAAG 58.778 40.000 0.00 0.00 36.76 3.79
253 255 1.613925 GCACTGTAGCTATCCGGATGA 59.386 52.381 27.55 10.03 0.00 2.92
255 257 3.306364 GCACTGTAGCTATCCGGATGATT 60.306 47.826 27.55 13.63 34.76 2.57
268 270 3.461061 CGGATGATTGCATACAGAGTGT 58.539 45.455 0.00 0.00 34.87 3.55
280 282 1.416401 ACAGAGTGTCCGGTGATTTGT 59.584 47.619 0.00 0.00 0.00 2.83
286 288 2.616842 GTGTCCGGTGATTTGTTTGAGT 59.383 45.455 0.00 0.00 0.00 3.41
290 292 6.315393 GTGTCCGGTGATTTGTTTGAGTATAT 59.685 38.462 0.00 0.00 0.00 0.86
291 293 7.493320 GTGTCCGGTGATTTGTTTGAGTATATA 59.507 37.037 0.00 0.00 0.00 0.86
295 297 7.094805 CCGGTGATTTGTTTGAGTATATATGGG 60.095 40.741 0.00 0.00 0.00 4.00
296 298 7.444183 CGGTGATTTGTTTGAGTATATATGGGT 59.556 37.037 0.00 0.00 0.00 4.51
306 308 7.387265 TGAGTATATATGGGTTCATGTTGGT 57.613 36.000 0.00 0.00 34.96 3.67
310 312 8.161425 AGTATATATGGGTTCATGTTGGTAACC 58.839 37.037 4.97 4.97 41.62 2.85
311 313 1.898902 TGGGTTCATGTTGGTAACCG 58.101 50.000 7.06 0.00 42.98 4.44
312 314 1.170442 GGGTTCATGTTGGTAACCGG 58.830 55.000 0.00 0.00 42.98 5.28
321 323 5.364446 TCATGTTGGTAACCGGTAGATGTAT 59.636 40.000 8.00 0.00 0.00 2.29
322 324 5.680594 TGTTGGTAACCGGTAGATGTATT 57.319 39.130 8.00 0.00 0.00 1.89
323 325 6.052405 TGTTGGTAACCGGTAGATGTATTT 57.948 37.500 8.00 0.00 0.00 1.40
406 408 5.468746 TGTTTGAGTTGTGGAACTATGCTAC 59.531 40.000 0.00 0.00 42.80 3.58
421 423 7.504924 ACTATGCTACTTTTGTTTGCTTGTA 57.495 32.000 0.00 0.00 33.83 2.41
431 433 7.547370 ACTTTTGTTTGCTTGTAAAACTATGCA 59.453 29.630 0.00 0.00 38.17 3.96
437 439 9.715123 GTTTGCTTGTAAAACTATGCAAAAATT 57.285 25.926 11.59 0.00 46.86 1.82
474 476 2.254546 AAACGATGTCAAGCCTGTCA 57.745 45.000 0.00 0.00 0.00 3.58
476 478 0.392706 ACGATGTCAAGCCTGTCACA 59.607 50.000 0.00 0.00 0.00 3.58
478 480 1.873486 CGATGTCAAGCCTGTCACACA 60.873 52.381 0.00 0.00 0.00 3.72
490 492 2.424601 CTGTCACACAGGCAAATATGGG 59.575 50.000 0.00 0.00 42.35 4.00
491 493 1.134946 GTCACACAGGCAAATATGGGC 59.865 52.381 0.00 0.00 0.00 5.36
501 503 1.671901 AAATATGGGCCGGCGGTTTG 61.672 55.000 28.82 1.42 0.00 2.93
502 504 4.805768 TATGGGCCGGCGGTTTGG 62.806 66.667 28.82 0.97 0.00 3.28
511 513 2.589442 GCGGTTTGGGTGTCACGA 60.589 61.111 0.00 0.00 0.00 4.35
512 514 2.181521 GCGGTTTGGGTGTCACGAA 61.182 57.895 0.00 0.00 0.00 3.85
514 516 1.644913 GGTTTGGGTGTCACGAACG 59.355 57.895 0.00 0.00 33.88 3.95
518 520 4.612412 GGGTGTCACGAACGGCCA 62.612 66.667 2.24 0.00 0.00 5.36
520 522 2.629763 GTGTCACGAACGGCCAAC 59.370 61.111 2.24 0.00 0.00 3.77
526 528 2.333581 CGAACGGCCAACCCAAAC 59.666 61.111 2.24 0.00 0.00 2.93
528 530 1.362355 GAACGGCCAACCCAAACAG 59.638 57.895 2.24 0.00 0.00 3.16
530 532 1.388837 AACGGCCAACCCAAACAGAC 61.389 55.000 2.24 0.00 0.00 3.51
531 533 1.528309 CGGCCAACCCAAACAGACT 60.528 57.895 2.24 0.00 0.00 3.24
535 537 2.696187 GGCCAACCCAAACAGACTAAAA 59.304 45.455 0.00 0.00 0.00 1.52
539 541 4.096682 CCAACCCAAACAGACTAAAAACGA 59.903 41.667 0.00 0.00 0.00 3.85
540 542 5.221165 CCAACCCAAACAGACTAAAAACGAT 60.221 40.000 0.00 0.00 0.00 3.73
542 544 5.127491 ACCCAAACAGACTAAAAACGATCA 58.873 37.500 0.00 0.00 0.00 2.92
543 545 5.591067 ACCCAAACAGACTAAAAACGATCAA 59.409 36.000 0.00 0.00 0.00 2.57
544 546 6.142817 CCCAAACAGACTAAAAACGATCAAG 58.857 40.000 0.00 0.00 0.00 3.02
545 547 5.625311 CCAAACAGACTAAAAACGATCAAGC 59.375 40.000 0.00 0.00 0.00 4.01
546 548 5.358298 AACAGACTAAAAACGATCAAGCC 57.642 39.130 0.00 0.00 0.00 4.35
547 549 3.751698 ACAGACTAAAAACGATCAAGCCC 59.248 43.478 0.00 0.00 0.00 5.19
548 550 3.751175 CAGACTAAAAACGATCAAGCCCA 59.249 43.478 0.00 0.00 0.00 5.36
549 551 3.751698 AGACTAAAAACGATCAAGCCCAC 59.248 43.478 0.00 0.00 0.00 4.61
557 573 0.741221 GATCAAGCCCACGGTCTGTC 60.741 60.000 0.00 0.00 0.00 3.51
657 690 0.676466 TCTCCGCTACCGAACCGTTA 60.676 55.000 0.00 0.00 36.29 3.18
730 763 2.807895 GCGCAAAGCCGTCGTCTA 60.808 61.111 0.30 0.00 40.81 2.59
756 789 2.378634 CCCATGGGACCAGAGGACC 61.379 68.421 28.27 0.00 36.82 4.46
803 836 2.644992 GGCAAAGCAACCGAGTGG 59.355 61.111 0.00 0.00 42.84 4.00
804 837 2.050077 GCAAAGCAACCGAGTGGC 60.050 61.111 0.00 0.00 39.70 5.01
898 959 1.228063 CCTGATCCTCCCGCCATTG 60.228 63.158 0.00 0.00 0.00 2.82
973 1037 2.286872 CTCCATCGATTTGCTCTGCTT 58.713 47.619 0.00 0.00 0.00 3.91
978 1042 2.350522 TCGATTTGCTCTGCTTTCCTC 58.649 47.619 0.00 0.00 0.00 3.71
980 1044 1.399791 GATTTGCTCTGCTTTCCTCGG 59.600 52.381 0.00 0.00 0.00 4.63
1008 1094 0.812549 CTTACACATGCATGCTGCCA 59.187 50.000 26.53 11.95 44.23 4.92
1015 1101 1.600957 CATGCATGCTGCCACTACTAC 59.399 52.381 20.33 0.00 44.23 2.73
1022 1108 1.799548 GCTGCCACTACTACGCTTCTC 60.800 57.143 0.00 0.00 0.00 2.87
1023 1109 1.746220 CTGCCACTACTACGCTTCTCT 59.254 52.381 0.00 0.00 0.00 3.10
1086 1172 4.148825 CTCCACGGCCCGAGGAAG 62.149 72.222 22.67 13.03 44.84 3.46
1092 1181 3.717294 GGCCCGAGGAAGGAAGCA 61.717 66.667 0.00 0.00 0.00 3.91
1096 1185 2.103042 CCGAGGAAGGAAGCAAGCG 61.103 63.158 0.00 0.00 0.00 4.68
1108 1197 2.587194 CAAGCGGCATCTCTCGGG 60.587 66.667 1.45 0.00 0.00 5.14
1109 1198 2.759973 AAGCGGCATCTCTCGGGA 60.760 61.111 1.45 0.00 0.00 5.14
1110 1199 2.359169 AAGCGGCATCTCTCGGGAA 61.359 57.895 1.45 0.00 0.00 3.97
1111 1200 2.579684 AAGCGGCATCTCTCGGGAAC 62.580 60.000 1.45 0.00 0.00 3.62
1129 1218 2.264794 GAACGACGATGGGGCTGT 59.735 61.111 0.00 0.00 0.00 4.40
1143 1232 2.892425 CTGTCCGCCATCTTCGCC 60.892 66.667 0.00 0.00 0.00 5.54
1817 1915 3.884693 TGATCAAACTGCTGCTCTTTTCA 59.115 39.130 0.00 0.00 0.00 2.69
1820 1922 2.719426 AACTGCTGCTCTTTTCATGC 57.281 45.000 0.00 0.00 0.00 4.06
1823 1925 1.268625 CTGCTGCTCTTTTCATGCACA 59.731 47.619 0.00 0.00 32.91 4.57
1827 1929 1.067425 TGCTCTTTTCATGCACATGCC 60.067 47.619 5.73 0.00 41.18 4.40
1848 1950 4.022416 GCCACACACATTTTACAAGGATGA 60.022 41.667 0.00 0.00 0.00 2.92
1851 1953 7.153985 CCACACACATTTTACAAGGATGATTT 58.846 34.615 0.00 0.00 0.00 2.17
1854 1956 9.077885 ACACACATTTTACAAGGATGATTTAGT 57.922 29.630 0.00 0.00 0.00 2.24
1889 1991 1.546476 GGAGTGTCAGTGATCTCGGTT 59.454 52.381 16.54 0.00 0.00 4.44
1890 1992 2.028930 GGAGTGTCAGTGATCTCGGTTT 60.029 50.000 16.54 0.00 0.00 3.27
1891 1993 3.192844 GGAGTGTCAGTGATCTCGGTTTA 59.807 47.826 16.54 0.00 0.00 2.01
1892 1994 4.167268 GAGTGTCAGTGATCTCGGTTTAC 58.833 47.826 0.00 0.00 0.00 2.01
1893 1995 3.827302 AGTGTCAGTGATCTCGGTTTACT 59.173 43.478 0.00 0.00 0.00 2.24
1894 1996 5.008331 AGTGTCAGTGATCTCGGTTTACTA 58.992 41.667 0.00 0.00 0.00 1.82
1895 1997 5.124138 AGTGTCAGTGATCTCGGTTTACTAG 59.876 44.000 0.00 0.00 0.00 2.57
1896 1998 5.123502 GTGTCAGTGATCTCGGTTTACTAGA 59.876 44.000 0.00 0.00 0.00 2.43
1897 1999 5.886474 TGTCAGTGATCTCGGTTTACTAGAT 59.114 40.000 0.00 0.00 32.70 1.98
1898 2000 6.183360 TGTCAGTGATCTCGGTTTACTAGATG 60.183 42.308 0.00 0.00 30.19 2.90
1906 2008 5.466058 TCTCGGTTTACTAGATGAGATCGTC 59.534 44.000 0.00 0.00 0.00 4.20
1907 2009 5.121105 TCGGTTTACTAGATGAGATCGTCA 58.879 41.667 0.00 0.00 40.38 4.35
1951 2065 5.471456 GGAATGTAGTATGAAATGGCCTCAG 59.529 44.000 3.32 0.00 0.00 3.35
2014 2136 0.884259 TGATGGCACTGTTGGACACG 60.884 55.000 0.00 0.00 0.00 4.49
2083 2205 1.152652 TGCTTGGGAAAGGCCGAAA 60.153 52.632 0.00 0.00 33.67 3.46
2099 2221 2.456989 CGAAATGCATGCATTCAGGTC 58.543 47.619 38.48 30.44 44.86 3.85
2116 2238 7.979444 TTCAGGTCAGGAGTTAATACTTTTG 57.021 36.000 0.00 0.00 33.84 2.44
2136 2258 9.413734 ACTTTTGTATACTATTACTACCTCCGT 57.586 33.333 4.17 0.00 0.00 4.69
2141 2263 8.432013 TGTATACTATTACTACCTCCGTCTCAA 58.568 37.037 4.17 0.00 0.00 3.02
2152 2274 4.283722 ACCTCCGTCTCAAATTACTTGTCT 59.716 41.667 0.00 0.00 36.34 3.41
2153 2275 5.221661 ACCTCCGTCTCAAATTACTTGTCTT 60.222 40.000 0.00 0.00 36.34 3.01
2155 2277 6.347725 CCTCCGTCTCAAATTACTTGTCTTTG 60.348 42.308 0.00 0.00 36.34 2.77
2157 2279 6.202188 TCCGTCTCAAATTACTTGTCTTTGTC 59.798 38.462 0.00 0.00 36.34 3.18
2159 2281 7.384115 CCGTCTCAAATTACTTGTCTTTGTCTA 59.616 37.037 0.00 0.00 36.34 2.59
2161 2283 9.477484 GTCTCAAATTACTTGTCTTTGTCTAGA 57.523 33.333 0.00 0.00 36.34 2.43
2167 2289 7.692460 TTACTTGTCTTTGTCTAGATACGGA 57.308 36.000 0.00 0.00 0.00 4.69
2168 2290 6.777213 ACTTGTCTTTGTCTAGATACGGAT 57.223 37.500 0.00 0.00 0.00 4.18
2169 2291 6.565234 ACTTGTCTTTGTCTAGATACGGATG 58.435 40.000 0.00 0.00 0.00 3.51
2170 2292 4.933330 TGTCTTTGTCTAGATACGGATGC 58.067 43.478 0.00 0.00 0.00 3.91
2171 2293 4.401202 TGTCTTTGTCTAGATACGGATGCA 59.599 41.667 0.00 0.00 0.00 3.96
2172 2294 4.740695 GTCTTTGTCTAGATACGGATGCAC 59.259 45.833 0.00 0.00 0.00 4.57
2173 2295 4.645136 TCTTTGTCTAGATACGGATGCACT 59.355 41.667 0.00 0.00 0.00 4.40
2174 2296 4.569761 TTGTCTAGATACGGATGCACTC 57.430 45.455 0.00 0.00 0.00 3.51
2175 2297 2.885266 TGTCTAGATACGGATGCACTCC 59.115 50.000 0.00 0.00 41.07 3.85
2176 2298 2.229302 GTCTAGATACGGATGCACTCCC 59.771 54.545 0.00 1.42 41.49 4.30
2177 2299 2.108425 TCTAGATACGGATGCACTCCCT 59.892 50.000 8.90 4.23 41.49 4.20
2178 2300 1.333177 AGATACGGATGCACTCCCTC 58.667 55.000 8.90 5.01 41.49 4.30
2179 2301 1.133325 AGATACGGATGCACTCCCTCT 60.133 52.381 8.90 6.65 41.49 3.69
2180 2302 1.000283 GATACGGATGCACTCCCTCTG 60.000 57.143 8.90 1.29 41.49 3.35
2181 2303 0.033503 TACGGATGCACTCCCTCTGA 60.034 55.000 8.90 0.00 41.49 3.27
2182 2304 0.689080 ACGGATGCACTCCCTCTGAT 60.689 55.000 8.90 0.00 41.49 2.90
2183 2305 0.033228 CGGATGCACTCCCTCTGATC 59.967 60.000 8.90 0.00 41.49 2.92
2184 2306 0.396060 GGATGCACTCCCTCTGATCC 59.604 60.000 0.00 0.00 38.19 3.36
2185 2307 1.126488 GATGCACTCCCTCTGATCCA 58.874 55.000 0.00 0.00 0.00 3.41
2186 2308 0.835941 ATGCACTCCCTCTGATCCAC 59.164 55.000 0.00 0.00 0.00 4.02
2187 2309 0.545071 TGCACTCCCTCTGATCCACA 60.545 55.000 0.00 0.00 0.00 4.17
2188 2310 0.615331 GCACTCCCTCTGATCCACAA 59.385 55.000 0.00 0.00 0.00 3.33
2189 2311 1.406614 GCACTCCCTCTGATCCACAAG 60.407 57.143 0.00 0.00 0.00 3.16
2190 2312 1.905215 CACTCCCTCTGATCCACAAGT 59.095 52.381 0.00 0.00 0.00 3.16
2191 2313 3.099905 CACTCCCTCTGATCCACAAGTA 58.900 50.000 0.00 0.00 0.00 2.24
2192 2314 3.515502 CACTCCCTCTGATCCACAAGTAA 59.484 47.826 0.00 0.00 0.00 2.24
2193 2315 4.163078 CACTCCCTCTGATCCACAAGTAAT 59.837 45.833 0.00 0.00 0.00 1.89
2194 2316 5.363868 CACTCCCTCTGATCCACAAGTAATA 59.636 44.000 0.00 0.00 0.00 0.98
2195 2317 6.042552 CACTCCCTCTGATCCACAAGTAATAT 59.957 42.308 0.00 0.00 0.00 1.28
2196 2318 6.042552 ACTCCCTCTGATCCACAAGTAATATG 59.957 42.308 0.00 0.00 0.00 1.78
2197 2319 5.307976 TCCCTCTGATCCACAAGTAATATGG 59.692 44.000 0.00 0.00 34.58 2.74
2198 2320 5.307976 CCCTCTGATCCACAAGTAATATGGA 59.692 44.000 0.00 0.00 46.36 3.41
2205 2327 5.858381 TCCACAAGTAATATGGATCAGAGC 58.142 41.667 0.00 0.00 37.60 4.09
2206 2328 4.687948 CCACAAGTAATATGGATCAGAGCG 59.312 45.833 0.00 0.00 35.33 5.03
2207 2329 5.509670 CCACAAGTAATATGGATCAGAGCGA 60.510 44.000 0.00 0.00 35.33 4.93
2208 2330 5.632764 CACAAGTAATATGGATCAGAGCGAG 59.367 44.000 0.00 0.00 0.00 5.03
2209 2331 5.303078 ACAAGTAATATGGATCAGAGCGAGT 59.697 40.000 0.00 0.00 0.00 4.18
2210 2332 6.490381 ACAAGTAATATGGATCAGAGCGAGTA 59.510 38.462 0.00 0.00 0.00 2.59
2211 2333 7.177568 ACAAGTAATATGGATCAGAGCGAGTAT 59.822 37.037 0.00 0.00 0.00 2.12
2212 2334 7.328277 AGTAATATGGATCAGAGCGAGTATC 57.672 40.000 0.00 0.00 0.00 2.24
2213 2335 5.590530 AATATGGATCAGAGCGAGTATCC 57.409 43.478 0.00 0.00 38.71 2.59
2214 2336 2.364972 TGGATCAGAGCGAGTATCCA 57.635 50.000 9.07 9.07 44.32 3.41
2215 2337 2.666317 TGGATCAGAGCGAGTATCCAA 58.334 47.619 10.31 0.00 43.73 3.53
2216 2338 2.362397 TGGATCAGAGCGAGTATCCAAC 59.638 50.000 10.31 0.00 43.73 3.77
2217 2339 2.362397 GGATCAGAGCGAGTATCCAACA 59.638 50.000 0.00 0.00 38.23 3.33
2218 2340 2.941453 TCAGAGCGAGTATCCAACAC 57.059 50.000 0.00 0.00 0.00 3.32
2219 2341 2.447443 TCAGAGCGAGTATCCAACACT 58.553 47.619 0.00 0.00 0.00 3.55
2220 2342 3.617284 TCAGAGCGAGTATCCAACACTA 58.383 45.455 0.00 0.00 0.00 2.74
2221 2343 4.014406 TCAGAGCGAGTATCCAACACTAA 58.986 43.478 0.00 0.00 0.00 2.24
2222 2344 4.461431 TCAGAGCGAGTATCCAACACTAAA 59.539 41.667 0.00 0.00 0.00 1.85
2223 2345 5.047590 TCAGAGCGAGTATCCAACACTAAAA 60.048 40.000 0.00 0.00 0.00 1.52
2224 2346 5.812642 CAGAGCGAGTATCCAACACTAAAAT 59.187 40.000 0.00 0.00 0.00 1.82
2225 2347 5.812642 AGAGCGAGTATCCAACACTAAAATG 59.187 40.000 0.00 0.00 0.00 2.32
2226 2348 4.332819 AGCGAGTATCCAACACTAAAATGC 59.667 41.667 0.00 0.00 0.00 3.56
2227 2349 4.782195 GCGAGTATCCAACACTAAAATGCG 60.782 45.833 0.00 0.00 0.00 4.73
2228 2350 4.328983 CGAGTATCCAACACTAAAATGCGT 59.671 41.667 0.00 0.00 0.00 5.24
2229 2351 5.517411 CGAGTATCCAACACTAAAATGCGTA 59.483 40.000 0.00 0.00 0.00 4.42
2230 2352 6.035220 CGAGTATCCAACACTAAAATGCGTAA 59.965 38.462 0.00 0.00 0.00 3.18
2231 2353 7.254319 CGAGTATCCAACACTAAAATGCGTAAT 60.254 37.037 0.00 0.00 0.00 1.89
2232 2354 8.276252 AGTATCCAACACTAAAATGCGTAATT 57.724 30.769 0.00 0.00 0.00 1.40
2233 2355 8.395633 AGTATCCAACACTAAAATGCGTAATTC 58.604 33.333 0.00 0.00 0.00 2.17
2234 2356 5.623335 TCCAACACTAAAATGCGTAATTCG 58.377 37.500 0.00 0.00 43.12 3.34
2235 2357 4.791163 CCAACACTAAAATGCGTAATTCGG 59.209 41.667 0.00 0.00 40.26 4.30
2236 2358 4.609691 ACACTAAAATGCGTAATTCGGG 57.390 40.909 0.00 0.00 40.26 5.14
2237 2359 4.255301 ACACTAAAATGCGTAATTCGGGA 58.745 39.130 0.00 0.00 40.26 5.14
2252 2374 2.427742 GGGACGGAGGGAGTATGAC 58.572 63.158 0.00 0.00 0.00 3.06
2259 2381 2.483714 CGGAGGGAGTATGACATTGTGG 60.484 54.545 0.00 0.00 0.00 4.17
2280 2402 5.048083 GTGGTCCATTGCATAAGTTTTCTCA 60.048 40.000 0.00 0.00 0.00 3.27
2288 2410 9.409312 CATTGCATAAGTTTTCTCAAATGTACA 57.591 29.630 0.00 0.00 0.00 2.90
2295 2417 7.383102 AGTTTTCTCAAATGTACATAGCAGG 57.617 36.000 9.21 0.00 0.00 4.85
2329 2451 1.068472 CCTTCGAGCCGCGTATAAGAT 60.068 52.381 4.92 0.00 41.80 2.40
2362 2484 8.687292 AGCACATTGTTCAGTATATGATGAAT 57.313 30.769 7.45 0.00 37.89 2.57
2367 2489 9.394477 CATTGTTCAGTATATGATGAATTGCTG 57.606 33.333 7.45 0.00 37.89 4.41
2377 2499 4.914983 TGATGAATTGCTGATCTATCCCC 58.085 43.478 0.00 0.00 0.00 4.81
2417 2539 4.082245 GGTTCAAAAGTGTGTATCCATGGG 60.082 45.833 13.02 0.00 0.00 4.00
2492 2745 7.228507 TCTCTGTTTTTGTATGCTCTGCTTTTA 59.771 33.333 0.00 0.00 0.00 1.52
2498 2751 3.871006 TGTATGCTCTGCTTTTACCGATG 59.129 43.478 0.00 0.00 0.00 3.84
2508 2761 4.631377 TGCTTTTACCGATGACTGATTCTG 59.369 41.667 0.00 0.00 0.00 3.02
2529 2782 1.789506 GACTCCACAGCTGAACAGAC 58.210 55.000 23.35 8.79 0.00 3.51
2655 2909 1.735386 CTTCAGACCATGGACTGCTG 58.265 55.000 31.66 23.40 37.70 4.41
2748 3002 9.173939 CTCAAGTAAAATTCAGCTTACAACTTG 57.826 33.333 11.14 11.14 41.50 3.16
2846 3105 2.057137 ATATTGCACACCGGCTTCAT 57.943 45.000 0.00 0.00 34.04 2.57
3014 3273 4.630894 ATGTGTTTCAGAACGCTTTTCA 57.369 36.364 4.72 0.00 44.60 2.69
3045 3304 4.387862 GCTGTTTTCTGCAATCAAGATTGG 59.612 41.667 20.72 8.34 46.14 3.16
3056 3315 6.318648 TGCAATCAAGATTGGTGTATCTTACC 59.681 38.462 20.72 4.09 46.14 2.85
3209 3478 5.271625 ACAAACTATGTGATAGACTACGCG 58.728 41.667 3.53 3.53 41.93 6.01
3286 3606 2.068519 GAAAAAGCCTGGCAATTTCCG 58.931 47.619 26.13 0.00 32.91 4.30
3327 3647 0.312102 GCAACTGACACTGCCCTTTC 59.688 55.000 0.00 0.00 32.18 2.62
3575 4049 9.093970 GTAAAGCTTTAACCATGAACAAAGTTT 57.906 29.630 20.22 2.10 34.29 2.66
3583 4057 6.524101 ACCATGAACAAAGTTTACACAGTT 57.476 33.333 0.00 0.00 0.00 3.16
3723 4223 7.227512 CCAGTTTTTATCTTCGCATATCTCCTT 59.772 37.037 0.00 0.00 0.00 3.36
3739 4239 9.605275 CATATCTCCTTTTTCTGACAGTTCATA 57.395 33.333 1.59 0.00 0.00 2.15
3827 4327 1.369321 CTCTCTTGCCCCGCTATCC 59.631 63.158 0.00 0.00 0.00 2.59
4170 4670 5.981315 CAGTATGATGATGGCCATGTTTTTC 59.019 40.000 26.56 9.19 39.69 2.29
4171 4671 3.507103 TGATGATGGCCATGTTTTTCG 57.493 42.857 26.56 0.00 35.17 3.46
4172 4672 2.824936 TGATGATGGCCATGTTTTTCGT 59.175 40.909 26.56 9.94 35.17 3.85
4213 4715 0.327924 AGGGGCATCATCACGTTCAA 59.672 50.000 0.00 0.00 0.00 2.69
4231 4733 6.706270 ACGTTCAAGTGTGACTTTATCTCATT 59.294 34.615 0.00 0.00 36.03 2.57
4276 4784 3.961480 TGTGTGTAAGCAGCATCTAGT 57.039 42.857 0.00 0.00 0.00 2.57
4293 4801 6.455647 CATCTAGTAGGATATGTTTTGCGGA 58.544 40.000 0.00 0.00 0.00 5.54
4321 4849 5.978919 CCACCGGATAATGATCATGTTTTTG 59.021 40.000 9.46 1.49 33.27 2.44
4322 4850 5.978919 CACCGGATAATGATCATGTTTTTGG 59.021 40.000 9.46 9.85 33.27 3.28
4350 4880 6.758886 AGGATACGAGAGAGCTTTATTGTTTG 59.241 38.462 0.00 0.00 46.39 2.93
4358 4888 6.920210 AGAGAGCTTTATTGTTTGAGTTTTGC 59.080 34.615 0.00 0.00 0.00 3.68
4359 4889 6.809869 AGAGCTTTATTGTTTGAGTTTTGCT 58.190 32.000 0.00 0.00 0.00 3.91
4368 4898 6.363577 TGTTTGAGTTTTGCTAAGTCTCAG 57.636 37.500 13.64 0.00 36.68 3.35
4392 4922 6.308282 AGTCGACTGAAATTTCGTTATGTCTC 59.692 38.462 19.30 10.62 36.60 3.36
4404 4934 3.969352 CGTTATGTCTCAGTCGATGCTAC 59.031 47.826 0.00 0.00 0.00 3.58
4408 4938 4.456280 TGTCTCAGTCGATGCTACATTT 57.544 40.909 0.00 0.00 0.00 2.32
4415 4945 6.108687 TCAGTCGATGCTACATTTCTTTGAT 58.891 36.000 0.00 0.00 0.00 2.57
4419 4949 7.752239 AGTCGATGCTACATTTCTTTGATTTTG 59.248 33.333 0.00 0.00 0.00 2.44
4420 4950 6.527722 TCGATGCTACATTTCTTTGATTTTGC 59.472 34.615 0.00 0.00 0.00 3.68
4422 4952 7.009815 CGATGCTACATTTCTTTGATTTTGCAT 59.990 33.333 0.00 0.00 38.67 3.96
4423 4953 7.354025 TGCTACATTTCTTTGATTTTGCATG 57.646 32.000 0.00 0.00 0.00 4.06
4426 4956 7.201496 GCTACATTTCTTTGATTTTGCATGGAG 60.201 37.037 0.00 0.00 0.00 3.86
4427 4957 6.761312 ACATTTCTTTGATTTTGCATGGAGA 58.239 32.000 0.00 0.00 0.00 3.71
4429 4959 7.881232 ACATTTCTTTGATTTTGCATGGAGATT 59.119 29.630 0.00 0.00 0.00 2.40
4430 4960 7.894376 TTTCTTTGATTTTGCATGGAGATTC 57.106 32.000 0.00 0.00 0.00 2.52
4431 4961 5.643664 TCTTTGATTTTGCATGGAGATTCG 58.356 37.500 0.00 0.00 0.00 3.34
4432 4962 5.183713 TCTTTGATTTTGCATGGAGATTCGT 59.816 36.000 0.00 0.00 0.00 3.85
4437 4967 7.374272 TGATTTTGCATGGAGATTCGTAAAAA 58.626 30.769 0.00 0.00 0.00 1.94
4438 4968 7.541783 TGATTTTGCATGGAGATTCGTAAAAAG 59.458 33.333 0.00 0.00 0.00 2.27
4440 4970 6.567687 TTGCATGGAGATTCGTAAAAAGAA 57.432 33.333 0.00 0.00 0.00 2.52
4441 4971 6.567687 TGCATGGAGATTCGTAAAAAGAAA 57.432 33.333 0.00 0.00 0.00 2.52
4442 4972 6.976088 TGCATGGAGATTCGTAAAAAGAAAA 58.024 32.000 0.00 0.00 0.00 2.29
4443 4973 7.601856 TGCATGGAGATTCGTAAAAAGAAAAT 58.398 30.769 0.00 0.00 0.00 1.82
4444 4974 8.087750 TGCATGGAGATTCGTAAAAAGAAAATT 58.912 29.630 0.00 0.00 0.00 1.82
4445 4975 8.587111 GCATGGAGATTCGTAAAAAGAAAATTC 58.413 33.333 0.00 0.00 0.00 2.17
4446 4976 9.846248 CATGGAGATTCGTAAAAAGAAAATTCT 57.154 29.630 0.00 0.00 39.74 2.40
4500 5030 7.246171 ACCAGTATGTCACTTGATTAAGACT 57.754 36.000 3.94 0.00 34.26 3.24
4501 5031 7.680730 ACCAGTATGTCACTTGATTAAGACTT 58.319 34.615 3.94 0.00 34.26 3.01
4502 5032 7.604164 ACCAGTATGTCACTTGATTAAGACTTG 59.396 37.037 3.94 0.00 34.26 3.16
4503 5033 7.065085 CCAGTATGTCACTTGATTAAGACTTGG 59.935 40.741 3.94 0.00 34.26 3.61
4504 5034 7.604164 CAGTATGTCACTTGATTAAGACTTGGT 59.396 37.037 3.94 0.00 34.26 3.67
4505 5035 8.157476 AGTATGTCACTTGATTAAGACTTGGTT 58.843 33.333 3.94 0.00 37.36 3.67
4506 5036 9.431887 GTATGTCACTTGATTAAGACTTGGTTA 57.568 33.333 3.94 0.00 37.36 2.85
4507 5037 8.918202 ATGTCACTTGATTAAGACTTGGTTAA 57.082 30.769 3.94 0.00 37.36 2.01
4508 5038 8.378172 TGTCACTTGATTAAGACTTGGTTAAG 57.622 34.615 3.94 1.95 37.36 1.85
4519 5049 4.240175 ACTTGGTTAAGTCTCAGTCGAC 57.760 45.455 7.70 7.70 43.53 4.20
4520 5050 3.890147 ACTTGGTTAAGTCTCAGTCGACT 59.110 43.478 13.58 13.58 43.53 4.18
4521 5051 3.917329 TGGTTAAGTCTCAGTCGACTG 57.083 47.619 34.76 34.76 43.14 3.51
4522 5052 6.438740 ACTTGGTTAAGTCTCAGTCGACTGA 61.439 44.000 38.24 38.24 45.53 3.41
4536 5066 1.455248 GACTGAGACCTAGTCGCACT 58.545 55.000 0.00 0.00 37.43 4.40
4537 5067 1.399089 GACTGAGACCTAGTCGCACTC 59.601 57.143 0.00 0.00 37.43 3.51
4538 5068 1.003812 ACTGAGACCTAGTCGCACTCT 59.996 52.381 0.00 0.00 37.43 3.24
4539 5069 2.088423 CTGAGACCTAGTCGCACTCTT 58.912 52.381 0.00 0.00 37.43 2.85
4540 5070 2.490115 CTGAGACCTAGTCGCACTCTTT 59.510 50.000 0.00 0.00 37.43 2.52
4541 5071 2.229062 TGAGACCTAGTCGCACTCTTTG 59.771 50.000 0.00 0.00 37.43 2.77
4542 5072 2.229302 GAGACCTAGTCGCACTCTTTGT 59.771 50.000 0.00 0.00 37.67 2.83
4543 5073 2.628657 AGACCTAGTCGCACTCTTTGTT 59.371 45.455 0.00 0.00 37.67 2.83
4544 5074 2.731976 GACCTAGTCGCACTCTTTGTTG 59.268 50.000 0.00 0.00 0.00 3.33
4545 5075 2.102588 ACCTAGTCGCACTCTTTGTTGT 59.897 45.455 0.00 0.00 0.00 3.32
4546 5076 3.131396 CCTAGTCGCACTCTTTGTTGTT 58.869 45.455 0.00 0.00 0.00 2.83
4547 5077 3.560068 CCTAGTCGCACTCTTTGTTGTTT 59.440 43.478 0.00 0.00 0.00 2.83
4591 5124 1.134280 AGGAGGTACATGCATGCACTC 60.134 52.381 25.37 26.03 0.00 3.51
4594 5127 1.439353 GGTACATGCATGCACTCGGG 61.439 60.000 25.37 12.64 0.00 5.14
4613 5157 1.078918 CCATCAAGAGGCGCAGACA 60.079 57.895 10.83 0.00 39.87 3.41
4627 5171 2.934553 CGCAGACACATGAAGATCACAT 59.065 45.455 0.00 0.00 0.00 3.21
4730 5366 4.023365 GTGCTGTTTGCTTTCTTGATCTCT 60.023 41.667 0.00 0.00 43.37 3.10
4731 5367 4.214971 TGCTGTTTGCTTTCTTGATCTCTC 59.785 41.667 0.00 0.00 43.37 3.20
4732 5368 4.455190 GCTGTTTGCTTTCTTGATCTCTCT 59.545 41.667 0.00 0.00 38.95 3.10
4733 5369 5.390779 GCTGTTTGCTTTCTTGATCTCTCTC 60.391 44.000 0.00 0.00 38.95 3.20
4734 5370 5.862845 TGTTTGCTTTCTTGATCTCTCTCT 58.137 37.500 0.00 0.00 0.00 3.10
4735 5371 5.931146 TGTTTGCTTTCTTGATCTCTCTCTC 59.069 40.000 0.00 0.00 0.00 3.20
4736 5372 5.999205 TTGCTTTCTTGATCTCTCTCTCT 57.001 39.130 0.00 0.00 0.00 3.10
4737 5373 5.581126 TGCTTTCTTGATCTCTCTCTCTC 57.419 43.478 0.00 0.00 0.00 3.20
4738 5374 5.263599 TGCTTTCTTGATCTCTCTCTCTCT 58.736 41.667 0.00 0.00 0.00 3.10
4739 5375 5.357878 TGCTTTCTTGATCTCTCTCTCTCTC 59.642 44.000 0.00 0.00 0.00 3.20
4740 5376 5.591877 GCTTTCTTGATCTCTCTCTCTCTCT 59.408 44.000 0.00 0.00 0.00 3.10
4741 5377 6.238593 GCTTTCTTGATCTCTCTCTCTCTCTC 60.239 46.154 0.00 0.00 0.00 3.20
4742 5378 6.566079 TTCTTGATCTCTCTCTCTCTCTCT 57.434 41.667 0.00 0.00 0.00 3.10
4743 5379 6.166984 TCTTGATCTCTCTCTCTCTCTCTC 57.833 45.833 0.00 0.00 0.00 3.20
4744 5380 5.901853 TCTTGATCTCTCTCTCTCTCTCTCT 59.098 44.000 0.00 0.00 0.00 3.10
4745 5381 5.798125 TGATCTCTCTCTCTCTCTCTCTC 57.202 47.826 0.00 0.00 0.00 3.20
4746 5382 5.462240 TGATCTCTCTCTCTCTCTCTCTCT 58.538 45.833 0.00 0.00 0.00 3.10
4747 5383 5.538053 TGATCTCTCTCTCTCTCTCTCTCTC 59.462 48.000 0.00 0.00 0.00 3.20
4748 5384 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
4749 5385 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4750 5386 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4751 5387 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4752 5388 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4753 5389 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4754 5390 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4755 5391 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4756 5392 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4757 5393 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4758 5394 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4759 5395 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4760 5396 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4761 5397 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4762 5398 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4763 5399 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4764 5400 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4765 5401 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4766 5402 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4767 5403 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4768 5404 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4777 5413 6.213397 TCTCTCTCTCTCTCTCTCTCTTTTGA 59.787 42.308 0.00 0.00 0.00 2.69
4815 5451 4.380531 TCTCTTTGACGCTTTGACTTCAT 58.619 39.130 0.00 0.00 0.00 2.57
4844 5480 4.796775 GCCAAATCCCCCACCCCC 62.797 72.222 0.00 0.00 0.00 5.40
4867 5503 0.948678 GTCTAGCGGATCGAGCTTCT 59.051 55.000 17.53 0.35 43.24 2.85
4915 5551 5.063180 TGAGCACATTTTCATCATGGAAC 57.937 39.130 0.00 0.00 0.00 3.62
4928 5564 4.620589 TCATGGAACCGTAGTACCAAAA 57.379 40.909 0.00 0.00 36.00 2.44
4929 5565 5.168647 TCATGGAACCGTAGTACCAAAAT 57.831 39.130 0.00 0.00 36.00 1.82
4930 5566 4.938832 TCATGGAACCGTAGTACCAAAATG 59.061 41.667 0.00 0.00 36.00 2.32
4931 5567 4.354893 TGGAACCGTAGTACCAAAATGT 57.645 40.909 0.00 0.00 0.00 2.71
4932 5568 5.480642 TGGAACCGTAGTACCAAAATGTA 57.519 39.130 0.00 0.00 0.00 2.29
4933 5569 5.237048 TGGAACCGTAGTACCAAAATGTAC 58.763 41.667 0.00 0.00 41.13 2.90
4934 5570 5.221601 TGGAACCGTAGTACCAAAATGTACA 60.222 40.000 0.00 0.00 42.84 2.90
4935 5571 5.120674 GGAACCGTAGTACCAAAATGTACAC 59.879 44.000 0.00 0.78 42.84 2.90
4936 5572 5.473066 ACCGTAGTACCAAAATGTACACT 57.527 39.130 0.00 0.00 42.84 3.55
4937 5573 5.857268 ACCGTAGTACCAAAATGTACACTT 58.143 37.500 0.00 0.00 42.84 3.16
4938 5574 5.697633 ACCGTAGTACCAAAATGTACACTTG 59.302 40.000 0.00 5.10 42.84 3.16
4939 5575 5.390145 CCGTAGTACCAAAATGTACACTTGC 60.390 44.000 12.16 2.32 42.84 4.01
4940 5576 5.407387 CGTAGTACCAAAATGTACACTTGCT 59.593 40.000 12.16 8.02 42.84 3.91
4941 5577 5.941948 AGTACCAAAATGTACACTTGCTC 57.058 39.130 12.16 6.44 42.84 4.26
4942 5578 3.896648 ACCAAAATGTACACTTGCTCG 57.103 42.857 12.16 4.28 0.00 5.03
4943 5579 2.552315 ACCAAAATGTACACTTGCTCGG 59.448 45.455 12.16 4.41 0.00 4.63
4944 5580 2.552315 CCAAAATGTACACTTGCTCGGT 59.448 45.455 12.16 0.00 0.00 4.69
4945 5581 3.554524 CAAAATGTACACTTGCTCGGTG 58.445 45.455 0.00 0.00 40.19 4.94
4947 5583 2.543777 ATGTACACTTGCTCGGTGTT 57.456 45.000 13.14 0.00 44.25 3.32
4948 5584 2.319136 TGTACACTTGCTCGGTGTTT 57.681 45.000 13.14 0.00 44.25 2.83
4949 5585 1.937223 TGTACACTTGCTCGGTGTTTG 59.063 47.619 13.14 0.00 44.25 2.93
4950 5586 1.263217 GTACACTTGCTCGGTGTTTGG 59.737 52.381 13.14 0.00 44.25 3.28
4951 5587 1.008538 CACTTGCTCGGTGTTTGGC 60.009 57.895 0.00 0.00 0.00 4.52
4952 5588 2.193536 ACTTGCTCGGTGTTTGGCC 61.194 57.895 0.00 0.00 0.00 5.36
4953 5589 1.898574 CTTGCTCGGTGTTTGGCCT 60.899 57.895 3.32 0.00 0.00 5.19
4954 5590 2.133742 CTTGCTCGGTGTTTGGCCTG 62.134 60.000 3.32 0.00 0.00 4.85
4955 5591 3.365265 GCTCGGTGTTTGGCCTGG 61.365 66.667 3.32 0.00 0.00 4.45
4956 5592 2.429930 CTCGGTGTTTGGCCTGGA 59.570 61.111 3.32 0.00 0.00 3.86
4957 5593 1.672356 CTCGGTGTTTGGCCTGGAG 60.672 63.158 3.32 0.00 0.00 3.86
4958 5594 2.111999 CTCGGTGTTTGGCCTGGAGA 62.112 60.000 3.32 0.00 0.00 3.71
4959 5595 1.966451 CGGTGTTTGGCCTGGAGAC 60.966 63.158 3.32 0.00 0.00 3.36
4960 5596 1.966451 GGTGTTTGGCCTGGAGACG 60.966 63.158 3.32 0.00 0.00 4.18
4961 5597 1.966451 GTGTTTGGCCTGGAGACGG 60.966 63.158 3.32 0.00 0.00 4.79
4969 5605 3.147595 CTGGAGACGGGCATCGGA 61.148 66.667 3.86 0.00 44.45 4.55
4970 5606 2.443952 TGGAGACGGGCATCGGAT 60.444 61.111 3.86 0.00 44.45 4.18
4971 5607 2.032860 CTGGAGACGGGCATCGGATT 62.033 60.000 3.86 0.00 44.45 3.01
4972 5608 1.595382 GGAGACGGGCATCGGATTG 60.595 63.158 3.86 0.00 44.45 2.67
4973 5609 2.203070 AGACGGGCATCGGATTGC 60.203 61.111 3.86 0.00 44.45 3.56
4974 5610 2.513666 GACGGGCATCGGATTGCA 60.514 61.111 12.28 0.00 44.59 4.08
4975 5611 2.823829 GACGGGCATCGGATTGCAC 61.824 63.158 12.28 8.85 44.59 4.57
4976 5612 2.823593 CGGGCATCGGATTGCACA 60.824 61.111 12.76 0.00 46.63 4.57
4977 5613 2.827051 CGGGCATCGGATTGCACAG 61.827 63.158 12.76 4.72 46.63 3.66
4978 5614 1.451927 GGGCATCGGATTGCACAGA 60.452 57.895 12.28 0.00 45.57 3.41
4979 5615 1.031571 GGGCATCGGATTGCACAGAA 61.032 55.000 12.28 0.00 45.57 3.02
4980 5616 0.810648 GGCATCGGATTGCACAGAAA 59.189 50.000 12.28 0.00 44.59 2.52
4981 5617 1.202114 GGCATCGGATTGCACAGAAAA 59.798 47.619 12.28 0.00 44.59 2.29
4982 5618 2.352617 GGCATCGGATTGCACAGAAAAA 60.353 45.455 12.28 0.00 44.59 1.94
4983 5619 2.919229 GCATCGGATTGCACAGAAAAAG 59.081 45.455 0.00 0.00 42.31 2.27
4984 5620 2.704725 TCGGATTGCACAGAAAAAGC 57.295 45.000 0.00 0.00 0.00 3.51
4985 5621 1.952990 TCGGATTGCACAGAAAAAGCA 59.047 42.857 0.00 0.00 36.32 3.91
4990 5626 1.868469 TGCACAGAAAAAGCAATGGC 58.132 45.000 0.00 0.00 41.61 4.40
4991 5627 1.138464 TGCACAGAAAAAGCAATGGCA 59.862 42.857 0.00 0.00 44.61 4.92
4992 5628 2.224329 TGCACAGAAAAAGCAATGGCAT 60.224 40.909 0.00 0.00 44.61 4.40
4993 5629 2.809696 GCACAGAAAAAGCAATGGCATT 59.190 40.909 6.96 6.96 44.61 3.56
4994 5630 3.251487 GCACAGAAAAAGCAATGGCATTT 59.749 39.130 10.65 0.00 42.23 2.32
4995 5631 4.612033 GCACAGAAAAAGCAATGGCATTTC 60.612 41.667 10.65 5.77 39.78 2.17
4996 5632 4.512198 CACAGAAAAAGCAATGGCATTTCA 59.488 37.500 19.58 0.00 44.16 2.69
4997 5633 4.512571 ACAGAAAAAGCAATGGCATTTCAC 59.487 37.500 19.58 3.26 44.16 3.18
4998 5634 4.753107 CAGAAAAAGCAATGGCATTTCACT 59.247 37.500 19.58 5.68 44.16 3.41
4999 5635 5.237779 CAGAAAAAGCAATGGCATTTCACTT 59.762 36.000 19.58 11.47 44.16 3.16
5000 5636 5.237779 AGAAAAAGCAATGGCATTTCACTTG 59.762 36.000 19.58 0.45 44.16 3.16
5001 5637 3.756933 AAGCAATGGCATTTCACTTGT 57.243 38.095 10.65 0.00 44.61 3.16
5002 5638 3.034721 AGCAATGGCATTTCACTTGTG 57.965 42.857 10.65 0.00 44.61 3.33
5003 5639 1.461897 GCAATGGCATTTCACTTGTGC 59.538 47.619 10.65 5.33 40.72 4.57
5006 5642 3.846754 GCATTTCACTTGTGCCGC 58.153 55.556 0.00 0.00 32.88 6.53
5007 5643 1.734117 GCATTTCACTTGTGCCGCC 60.734 57.895 0.00 0.00 32.88 6.13
5008 5644 1.080569 CATTTCACTTGTGCCGCCC 60.081 57.895 0.00 0.00 0.00 6.13
5009 5645 2.625823 ATTTCACTTGTGCCGCCCG 61.626 57.895 0.00 0.00 0.00 6.13
5020 5656 3.625897 CCGCCCGGCCTGATGATA 61.626 66.667 3.10 0.00 0.00 2.15
5021 5657 2.357517 CGCCCGGCCTGATGATAC 60.358 66.667 3.10 0.00 0.00 2.24
5022 5658 2.357517 GCCCGGCCTGATGATACG 60.358 66.667 0.00 0.00 0.00 3.06
5023 5659 2.343758 CCCGGCCTGATGATACGG 59.656 66.667 0.00 0.00 43.89 4.02
5024 5660 2.507854 CCCGGCCTGATGATACGGT 61.508 63.158 0.00 0.00 42.81 4.83
5025 5661 1.300931 CCGGCCTGATGATACGGTG 60.301 63.158 0.00 0.00 39.70 4.94
5026 5662 1.300931 CGGCCTGATGATACGGTGG 60.301 63.158 0.00 0.00 0.00 4.61
5027 5663 1.830145 GGCCTGATGATACGGTGGT 59.170 57.895 0.00 0.00 0.00 4.16
5028 5664 0.532862 GGCCTGATGATACGGTGGTG 60.533 60.000 0.00 0.00 0.00 4.17
5029 5665 0.464036 GCCTGATGATACGGTGGTGA 59.536 55.000 0.00 0.00 0.00 4.02
5030 5666 1.539065 GCCTGATGATACGGTGGTGAG 60.539 57.143 0.00 0.00 0.00 3.51
5031 5667 1.069204 CCTGATGATACGGTGGTGAGG 59.931 57.143 0.00 0.00 0.00 3.86
5032 5668 1.757118 CTGATGATACGGTGGTGAGGT 59.243 52.381 0.00 0.00 0.00 3.85
5033 5669 1.480545 TGATGATACGGTGGTGAGGTG 59.519 52.381 0.00 0.00 0.00 4.00
5034 5670 0.830648 ATGATACGGTGGTGAGGTGG 59.169 55.000 0.00 0.00 0.00 4.61
5035 5671 0.543410 TGATACGGTGGTGAGGTGGT 60.543 55.000 0.00 0.00 0.00 4.16
5036 5672 0.175073 GATACGGTGGTGAGGTGGTC 59.825 60.000 0.00 0.00 0.00 4.02
5037 5673 1.262640 ATACGGTGGTGAGGTGGTCC 61.263 60.000 0.00 0.00 0.00 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.321648 ATCGCTGGAGTGTGCCCA 61.322 61.111 0.00 0.00 0.00 5.36
19 20 5.408356 GTTGCTCTCTTGATTGCAATTCAT 58.592 37.500 14.33 0.00 45.25 2.57
25 26 2.275134 TGGTTGCTCTCTTGATTGCA 57.725 45.000 0.00 0.00 0.00 4.08
30 31 3.795688 AGGAAATGGTTGCTCTCTTGA 57.204 42.857 0.00 0.00 27.18 3.02
32 33 4.379302 AGAAGGAAATGGTTGCTCTCTT 57.621 40.909 0.00 0.00 33.69 2.85
84 85 4.244862 GGAATTGGCGACATTTGAACAAT 58.755 39.130 2.50 0.00 42.32 2.71
116 117 3.181469 GGAAACATGTCTAGCCATACGGA 60.181 47.826 0.00 0.00 0.00 4.69
117 118 3.131396 GGAAACATGTCTAGCCATACGG 58.869 50.000 0.00 0.00 0.00 4.02
118 119 3.792401 TGGAAACATGTCTAGCCATACG 58.208 45.455 0.00 0.00 33.40 3.06
137 138 1.472728 CCCCTTCTCGATTACGGTTGG 60.473 57.143 0.00 0.00 40.21 3.77
139 140 1.206371 CACCCCTTCTCGATTACGGTT 59.794 52.381 0.00 0.00 40.21 4.44
141 142 1.108776 TCACCCCTTCTCGATTACGG 58.891 55.000 0.00 0.00 40.21 4.02
146 147 1.879575 TCCAATCACCCCTTCTCGAT 58.120 50.000 0.00 0.00 0.00 3.59
148 149 2.434336 TGTATCCAATCACCCCTTCTCG 59.566 50.000 0.00 0.00 0.00 4.04
149 150 4.503714 TTGTATCCAATCACCCCTTCTC 57.496 45.455 0.00 0.00 0.00 2.87
152 153 6.341408 ACTTATTGTATCCAATCACCCCTT 57.659 37.500 0.00 0.00 41.50 3.95
162 163 7.269316 TGCACTCGAAATACTTATTGTATCCA 58.731 34.615 0.00 0.00 40.69 3.41
164 165 8.276325 CCTTGCACTCGAAATACTTATTGTATC 58.724 37.037 0.00 0.00 40.69 2.24
169 170 5.817816 CCTCCTTGCACTCGAAATACTTATT 59.182 40.000 0.00 0.00 0.00 1.40
227 228 3.312828 CGGATAGCTACAGTGCATCTTC 58.687 50.000 0.00 0.00 34.99 2.87
228 229 2.036475 CCGGATAGCTACAGTGCATCTT 59.964 50.000 0.00 0.00 34.99 2.40
230 231 1.613925 TCCGGATAGCTACAGTGCATC 59.386 52.381 0.00 0.00 34.99 3.91
232 233 1.341209 CATCCGGATAGCTACAGTGCA 59.659 52.381 18.63 0.00 34.99 4.57
233 234 1.613925 TCATCCGGATAGCTACAGTGC 59.386 52.381 18.63 0.00 0.00 4.40
234 235 4.240888 CAATCATCCGGATAGCTACAGTG 58.759 47.826 18.63 2.68 34.28 3.66
235 236 3.306364 GCAATCATCCGGATAGCTACAGT 60.306 47.826 18.63 0.00 34.28 3.55
236 237 3.257393 GCAATCATCCGGATAGCTACAG 58.743 50.000 18.63 2.62 34.28 2.74
238 239 3.319137 TGCAATCATCCGGATAGCTAC 57.681 47.619 18.63 7.79 34.28 3.58
239 240 4.466015 TGTATGCAATCATCCGGATAGCTA 59.534 41.667 18.63 9.98 34.28 3.32
253 255 1.555075 ACCGGACACTCTGTATGCAAT 59.445 47.619 9.46 0.00 0.00 3.56
255 257 0.246360 CACCGGACACTCTGTATGCA 59.754 55.000 9.46 0.00 0.00 3.96
268 270 7.659799 CCATATATACTCAAACAAATCACCGGA 59.340 37.037 9.46 0.00 0.00 5.14
280 282 8.278639 ACCAACATGAACCCATATATACTCAAA 58.721 33.333 0.00 0.00 0.00 2.69
286 288 7.162761 CGGTTACCAACATGAACCCATATATA 58.837 38.462 0.00 0.00 39.64 0.86
290 292 3.611970 CGGTTACCAACATGAACCCATA 58.388 45.455 0.00 0.00 39.64 2.74
291 293 2.442413 CGGTTACCAACATGAACCCAT 58.558 47.619 0.00 0.00 39.64 4.00
295 297 3.929094 TCTACCGGTTACCAACATGAAC 58.071 45.455 15.04 0.00 0.00 3.18
296 298 4.020039 ACATCTACCGGTTACCAACATGAA 60.020 41.667 15.04 0.00 0.00 2.57
383 385 5.701290 AGTAGCATAGTTCCACAACTCAAAC 59.299 40.000 0.00 0.00 42.27 2.93
386 388 5.483685 AAGTAGCATAGTTCCACAACTCA 57.516 39.130 0.00 0.00 42.27 3.41
389 391 6.313744 ACAAAAGTAGCATAGTTCCACAAC 57.686 37.500 0.00 0.00 31.83 3.32
395 397 6.918022 ACAAGCAAACAAAAGTAGCATAGTTC 59.082 34.615 0.00 0.00 31.83 3.01
402 404 7.520119 AGTTTTACAAGCAAACAAAAGTAGC 57.480 32.000 0.19 0.00 36.71 3.58
406 408 7.904094 TGCATAGTTTTACAAGCAAACAAAAG 58.096 30.769 0.19 0.00 36.71 2.27
454 456 2.290641 GTGACAGGCTTGACATCGTTTT 59.709 45.455 1.40 0.00 31.96 2.43
461 463 3.384816 CTGTGTGACAGGCTTGACA 57.615 52.632 1.40 0.00 42.35 3.58
470 472 2.445427 CCCATATTTGCCTGTGTGACA 58.555 47.619 0.00 0.00 0.00 3.58
474 476 1.037030 CGGCCCATATTTGCCTGTGT 61.037 55.000 0.00 0.00 45.71 3.72
476 478 1.455587 CCGGCCCATATTTGCCTGT 60.456 57.895 0.00 0.00 45.71 4.00
478 480 2.521708 GCCGGCCCATATTTGCCT 60.522 61.111 18.11 0.00 45.71 4.75
491 493 4.939368 TGACACCCAAACCGCCGG 62.939 66.667 0.00 0.00 0.00 6.13
493 495 3.656045 CGTGACACCCAAACCGCC 61.656 66.667 0.00 0.00 0.00 6.13
501 503 4.612412 TGGCCGTTCGTGACACCC 62.612 66.667 0.00 0.00 0.00 4.61
502 504 2.589442 TTGGCCGTTCGTGACACC 60.589 61.111 0.00 0.00 0.00 4.16
503 505 2.629763 GTTGGCCGTTCGTGACAC 59.370 61.111 0.00 0.00 0.00 3.67
504 506 2.589442 GGTTGGCCGTTCGTGACA 60.589 61.111 0.00 0.00 0.00 3.58
505 507 3.351416 GGGTTGGCCGTTCGTGAC 61.351 66.667 0.00 0.00 34.97 3.67
506 508 2.888464 TTTGGGTTGGCCGTTCGTGA 62.888 55.000 0.00 0.00 34.97 4.35
507 509 2.482333 TTTGGGTTGGCCGTTCGTG 61.482 57.895 0.00 0.00 34.97 4.35
511 513 1.076632 TCTGTTTGGGTTGGCCGTT 60.077 52.632 0.00 0.00 34.97 4.44
512 514 1.826487 GTCTGTTTGGGTTGGCCGT 60.826 57.895 0.00 0.00 34.97 5.68
514 516 1.989706 TTAGTCTGTTTGGGTTGGCC 58.010 50.000 0.00 0.00 0.00 5.36
518 520 5.591067 TGATCGTTTTTAGTCTGTTTGGGTT 59.409 36.000 0.00 0.00 0.00 4.11
520 522 5.682943 TGATCGTTTTTAGTCTGTTTGGG 57.317 39.130 0.00 0.00 0.00 4.12
526 528 3.751175 TGGGCTTGATCGTTTTTAGTCTG 59.249 43.478 0.00 0.00 0.00 3.51
528 530 3.424433 CGTGGGCTTGATCGTTTTTAGTC 60.424 47.826 0.00 0.00 0.00 2.59
530 532 2.159572 CCGTGGGCTTGATCGTTTTTAG 60.160 50.000 0.00 0.00 0.00 1.85
531 533 1.807742 CCGTGGGCTTGATCGTTTTTA 59.192 47.619 0.00 0.00 0.00 1.52
535 537 1.375523 GACCGTGGGCTTGATCGTT 60.376 57.895 0.00 0.00 0.00 3.85
539 541 1.194781 AGACAGACCGTGGGCTTGAT 61.195 55.000 0.00 0.00 0.00 2.57
540 542 1.837051 AGACAGACCGTGGGCTTGA 60.837 57.895 0.00 0.00 0.00 3.02
542 544 1.821061 CTCAGACAGACCGTGGGCTT 61.821 60.000 0.00 0.00 0.00 4.35
543 545 2.203640 TCAGACAGACCGTGGGCT 60.204 61.111 0.00 0.00 0.00 5.19
544 546 2.262915 CTCAGACAGACCGTGGGC 59.737 66.667 0.00 0.00 0.00 5.36
545 547 2.262915 GCTCAGACAGACCGTGGG 59.737 66.667 0.00 0.00 0.00 4.61
546 548 2.126307 CGCTCAGACAGACCGTGG 60.126 66.667 0.00 0.00 0.00 4.94
547 549 2.126307 CCGCTCAGACAGACCGTG 60.126 66.667 0.00 0.00 0.00 4.94
548 550 4.057428 GCCGCTCAGACAGACCGT 62.057 66.667 0.00 0.00 0.00 4.83
592 608 2.083167 AGCAACCAAATCCGCAAATG 57.917 45.000 0.00 0.00 0.00 2.32
593 609 2.415776 CAAGCAACCAAATCCGCAAAT 58.584 42.857 0.00 0.00 0.00 2.32
631 664 1.300233 CGGTAGCGGAGAGAATGGC 60.300 63.158 6.39 0.00 0.00 4.40
657 690 5.319043 TGAAAAGGAAGAGGTAACCATGT 57.681 39.130 0.00 0.00 37.17 3.21
730 763 2.375345 GGTCCCATGGGTCGGTGAT 61.375 63.158 30.28 0.00 36.47 3.06
798 831 2.183046 GCAGAGAGACCGCCACTC 59.817 66.667 0.00 0.00 34.95 3.51
799 832 3.386237 GGCAGAGAGACCGCCACT 61.386 66.667 0.00 0.00 45.52 4.00
803 836 2.456287 AAAGGTGGCAGAGAGACCGC 62.456 60.000 0.00 0.00 34.72 5.68
804 837 0.390472 GAAAGGTGGCAGAGAGACCG 60.390 60.000 0.00 0.00 34.72 4.79
875 929 3.237741 CGGGAGGATCAGGGGAGC 61.238 72.222 0.00 0.00 36.25 4.70
946 1007 1.153168 AAATCGATGGAGGCGTGGG 60.153 57.895 0.00 0.00 0.00 4.61
1008 1094 1.935199 GCGAGAGAGAAGCGTAGTAGT 59.065 52.381 0.00 0.00 0.00 2.73
1081 1167 2.360475 GCCGCTTGCTTCCTTCCT 60.360 61.111 0.00 0.00 36.87 3.36
1082 1168 1.997928 GATGCCGCTTGCTTCCTTCC 61.998 60.000 0.00 0.00 42.00 3.46
1083 1169 1.028868 AGATGCCGCTTGCTTCCTTC 61.029 55.000 7.18 0.00 43.37 3.46
1084 1170 1.001641 AGATGCCGCTTGCTTCCTT 60.002 52.632 7.18 0.00 43.37 3.36
1085 1171 1.451028 GAGATGCCGCTTGCTTCCT 60.451 57.895 7.18 0.00 43.37 3.36
1086 1172 1.435408 GAGAGATGCCGCTTGCTTCC 61.435 60.000 7.18 1.56 43.37 3.46
1092 1181 2.359169 TTCCCGAGAGATGCCGCTT 61.359 57.895 0.00 0.00 0.00 4.68
1096 1185 0.806492 GTTCGTTCCCGAGAGATGCC 60.806 60.000 0.00 0.00 45.24 4.40
1108 1197 2.450345 GCCCCATCGTCGTTCGTTC 61.450 63.158 0.00 0.00 40.80 3.95
1109 1198 2.433664 GCCCCATCGTCGTTCGTT 60.434 61.111 0.00 0.00 40.80 3.85
1110 1199 3.379445 AGCCCCATCGTCGTTCGT 61.379 61.111 0.00 0.00 40.80 3.85
1111 1200 2.885644 CAGCCCCATCGTCGTTCG 60.886 66.667 0.00 0.00 41.41 3.95
1817 1915 0.970640 AATGTGTGTGGCATGTGCAT 59.029 45.000 7.36 0.00 44.36 3.96
1820 1922 3.974912 TGTAAAATGTGTGTGGCATGTG 58.025 40.909 0.00 0.00 0.00 3.21
1823 1925 3.894427 TCCTTGTAAAATGTGTGTGGCAT 59.106 39.130 0.00 0.00 0.00 4.40
1827 1929 9.345517 CTAAATCATCCTTGTAAAATGTGTGTG 57.654 33.333 0.00 0.00 0.00 3.82
1851 1953 9.031537 TGACACTCCTAGTAAATGAATCAACTA 57.968 33.333 0.00 0.00 0.00 2.24
1854 1956 7.819415 CACTGACACTCCTAGTAAATGAATCAA 59.181 37.037 0.00 0.00 0.00 2.57
1861 1963 6.038825 CGAGATCACTGACACTCCTAGTAAAT 59.961 42.308 0.00 0.00 0.00 1.40
1862 1964 5.354513 CGAGATCACTGACACTCCTAGTAAA 59.645 44.000 0.00 0.00 0.00 2.01
1863 1965 4.876679 CGAGATCACTGACACTCCTAGTAA 59.123 45.833 0.00 0.00 0.00 2.24
1864 1966 4.443621 CGAGATCACTGACACTCCTAGTA 58.556 47.826 0.00 0.00 0.00 1.82
1872 1974 4.175787 AGTAAACCGAGATCACTGACAC 57.824 45.455 0.00 0.00 0.00 3.67
1889 1991 5.563671 GCAGCATGACGATCTCATCTAGTAA 60.564 44.000 0.00 0.00 37.53 2.24
1890 1992 4.083057 GCAGCATGACGATCTCATCTAGTA 60.083 45.833 0.00 0.00 37.53 1.82
1891 1993 3.305267 GCAGCATGACGATCTCATCTAGT 60.305 47.826 0.00 0.00 37.53 2.57
1892 1994 3.244156 GCAGCATGACGATCTCATCTAG 58.756 50.000 0.00 0.00 37.53 2.43
1893 1995 2.624838 TGCAGCATGACGATCTCATCTA 59.375 45.455 0.00 0.00 37.53 1.98
1894 1996 1.411612 TGCAGCATGACGATCTCATCT 59.588 47.619 0.00 4.22 37.53 2.90
1895 1997 1.861971 TGCAGCATGACGATCTCATC 58.138 50.000 0.00 0.00 37.53 2.92
1896 1998 2.545537 ATGCAGCATGACGATCTCAT 57.454 45.000 7.23 2.84 40.59 2.90
1897 1999 1.937899 CAATGCAGCATGACGATCTCA 59.062 47.619 9.18 0.00 39.69 3.27
1898 2000 1.333881 GCAATGCAGCATGACGATCTC 60.334 52.381 9.18 0.00 39.69 2.75
1906 2008 3.181511 CCATTTCAAAGCAATGCAGCATG 60.182 43.478 9.18 4.58 40.87 4.06
1907 2009 3.006940 CCATTTCAAAGCAATGCAGCAT 58.993 40.909 8.35 0.52 36.85 3.79
1951 2065 7.201565 GGCACATGACTCTCATAGTTAGAAAAC 60.202 40.741 0.00 0.00 39.07 2.43
2083 2205 1.064240 TCCTGACCTGAATGCATGCAT 60.064 47.619 27.46 27.46 38.46 3.96
2116 2238 8.839310 TTGAGACGGAGGTAGTAATAGTATAC 57.161 38.462 0.00 0.00 0.00 1.47
2141 2263 8.746530 TCCGTATCTAGACAAAGACAAGTAATT 58.253 33.333 0.00 0.00 0.00 1.40
2152 2274 4.202121 GGAGTGCATCCGTATCTAGACAAA 60.202 45.833 0.00 0.00 38.67 2.83
2153 2275 3.318275 GGAGTGCATCCGTATCTAGACAA 59.682 47.826 0.00 0.00 38.67 3.18
2155 2277 3.562567 GGAGTGCATCCGTATCTAGAC 57.437 52.381 0.00 0.00 38.67 2.59
2167 2289 0.835941 GTGGATCAGAGGGAGTGCAT 59.164 55.000 0.00 0.00 0.00 3.96
2168 2290 0.545071 TGTGGATCAGAGGGAGTGCA 60.545 55.000 0.00 0.00 0.00 4.57
2169 2291 0.615331 TTGTGGATCAGAGGGAGTGC 59.385 55.000 0.00 0.00 0.00 4.40
2170 2292 1.905215 ACTTGTGGATCAGAGGGAGTG 59.095 52.381 0.00 0.00 0.00 3.51
2171 2293 2.334006 ACTTGTGGATCAGAGGGAGT 57.666 50.000 0.00 0.00 0.00 3.85
2172 2294 6.462500 CATATTACTTGTGGATCAGAGGGAG 58.538 44.000 0.00 0.00 0.00 4.30
2173 2295 5.307976 CCATATTACTTGTGGATCAGAGGGA 59.692 44.000 0.00 0.00 34.94 4.20
2174 2296 5.307976 TCCATATTACTTGTGGATCAGAGGG 59.692 44.000 0.00 0.00 37.12 4.30
2175 2297 6.425210 TCCATATTACTTGTGGATCAGAGG 57.575 41.667 0.00 0.00 37.12 3.69
2182 2304 5.509670 CGCTCTGATCCATATTACTTGTGGA 60.510 44.000 0.00 0.00 45.37 4.02
2183 2305 4.687948 CGCTCTGATCCATATTACTTGTGG 59.312 45.833 0.00 0.00 0.00 4.17
2184 2306 5.532557 TCGCTCTGATCCATATTACTTGTG 58.467 41.667 0.00 0.00 0.00 3.33
2185 2307 5.303078 ACTCGCTCTGATCCATATTACTTGT 59.697 40.000 0.00 0.00 0.00 3.16
2186 2308 5.777802 ACTCGCTCTGATCCATATTACTTG 58.222 41.667 0.00 0.00 0.00 3.16
2187 2309 7.147983 GGATACTCGCTCTGATCCATATTACTT 60.148 40.741 0.00 0.00 38.21 2.24
2188 2310 6.320164 GGATACTCGCTCTGATCCATATTACT 59.680 42.308 0.00 0.00 38.21 2.24
2189 2311 6.095580 TGGATACTCGCTCTGATCCATATTAC 59.904 42.308 0.00 0.00 42.30 1.89
2190 2312 6.187682 TGGATACTCGCTCTGATCCATATTA 58.812 40.000 0.00 0.00 42.30 0.98
2191 2313 5.019470 TGGATACTCGCTCTGATCCATATT 58.981 41.667 0.00 0.00 42.30 1.28
2192 2314 4.604156 TGGATACTCGCTCTGATCCATAT 58.396 43.478 0.00 0.00 42.30 1.78
2193 2315 4.034285 TGGATACTCGCTCTGATCCATA 57.966 45.455 0.00 0.00 42.30 2.74
2194 2316 2.881734 TGGATACTCGCTCTGATCCAT 58.118 47.619 0.00 0.00 42.30 3.41
2195 2317 2.362397 GTTGGATACTCGCTCTGATCCA 59.638 50.000 0.00 0.00 44.81 3.41
2196 2318 2.362397 TGTTGGATACTCGCTCTGATCC 59.638 50.000 0.00 0.00 38.70 3.36
2197 2319 3.067461 AGTGTTGGATACTCGCTCTGATC 59.933 47.826 0.00 0.00 37.61 2.92
2198 2320 3.027412 AGTGTTGGATACTCGCTCTGAT 58.973 45.455 0.00 0.00 37.61 2.90
2199 2321 2.447443 AGTGTTGGATACTCGCTCTGA 58.553 47.619 0.00 0.00 37.61 3.27
2200 2322 2.949451 AGTGTTGGATACTCGCTCTG 57.051 50.000 0.00 0.00 37.61 3.35
2201 2323 5.401531 TTTTAGTGTTGGATACTCGCTCT 57.598 39.130 0.00 0.00 34.82 4.09
2202 2324 5.502544 GCATTTTAGTGTTGGATACTCGCTC 60.503 44.000 0.00 0.00 34.82 5.03
2203 2325 4.332819 GCATTTTAGTGTTGGATACTCGCT 59.667 41.667 0.00 0.00 36.38 4.93
2204 2326 4.588278 GCATTTTAGTGTTGGATACTCGC 58.412 43.478 0.00 0.00 37.61 5.03
2205 2327 4.328983 ACGCATTTTAGTGTTGGATACTCG 59.671 41.667 0.00 0.00 37.61 4.18
2206 2328 5.796350 ACGCATTTTAGTGTTGGATACTC 57.204 39.130 0.00 0.00 37.61 2.59
2207 2329 7.859325 ATTACGCATTTTAGTGTTGGATACT 57.141 32.000 0.00 0.00 33.64 2.12
2208 2330 7.372396 CGAATTACGCATTTTAGTGTTGGATAC 59.628 37.037 0.00 0.00 33.64 2.24
2209 2331 7.403421 CGAATTACGCATTTTAGTGTTGGATA 58.597 34.615 0.00 0.00 33.64 2.59
2210 2332 6.255215 CGAATTACGCATTTTAGTGTTGGAT 58.745 36.000 0.00 0.00 33.64 3.41
2211 2333 5.391097 CCGAATTACGCATTTTAGTGTTGGA 60.391 40.000 0.00 0.00 41.07 3.53
2212 2334 4.791163 CCGAATTACGCATTTTAGTGTTGG 59.209 41.667 0.00 0.00 41.07 3.77
2213 2335 4.791163 CCCGAATTACGCATTTTAGTGTTG 59.209 41.667 0.00 0.00 41.07 3.33
2214 2336 4.696402 TCCCGAATTACGCATTTTAGTGTT 59.304 37.500 0.00 0.00 41.07 3.32
2215 2337 4.093850 GTCCCGAATTACGCATTTTAGTGT 59.906 41.667 0.00 0.00 41.07 3.55
2216 2338 4.584394 GTCCCGAATTACGCATTTTAGTG 58.416 43.478 0.00 0.00 41.07 2.74
2217 2339 3.307782 CGTCCCGAATTACGCATTTTAGT 59.692 43.478 0.00 0.00 41.07 2.24
2218 2340 3.302870 CCGTCCCGAATTACGCATTTTAG 60.303 47.826 0.00 0.00 41.07 1.85
2219 2341 2.608546 CCGTCCCGAATTACGCATTTTA 59.391 45.455 0.00 0.00 41.07 1.52
2220 2342 1.399089 CCGTCCCGAATTACGCATTTT 59.601 47.619 0.00 0.00 41.07 1.82
2221 2343 1.011333 CCGTCCCGAATTACGCATTT 58.989 50.000 0.00 0.00 41.07 2.32
2222 2344 0.176219 TCCGTCCCGAATTACGCATT 59.824 50.000 0.00 0.00 41.07 3.56
2223 2345 0.249322 CTCCGTCCCGAATTACGCAT 60.249 55.000 0.00 0.00 41.07 4.73
2224 2346 1.140161 CTCCGTCCCGAATTACGCA 59.860 57.895 0.00 0.00 41.07 5.24
2225 2347 1.590792 CCTCCGTCCCGAATTACGC 60.591 63.158 0.00 0.00 41.07 4.42
2226 2348 1.066918 CCCTCCGTCCCGAATTACG 59.933 63.158 0.00 0.00 42.18 3.18
2227 2349 0.388294 CTCCCTCCGTCCCGAATTAC 59.612 60.000 0.00 0.00 0.00 1.89
2228 2350 0.032813 ACTCCCTCCGTCCCGAATTA 60.033 55.000 0.00 0.00 0.00 1.40
2229 2351 0.032813 TACTCCCTCCGTCCCGAATT 60.033 55.000 0.00 0.00 0.00 2.17
2230 2352 0.187851 ATACTCCCTCCGTCCCGAAT 59.812 55.000 0.00 0.00 0.00 3.34
2231 2353 0.754217 CATACTCCCTCCGTCCCGAA 60.754 60.000 0.00 0.00 0.00 4.30
2232 2354 1.152819 CATACTCCCTCCGTCCCGA 60.153 63.158 0.00 0.00 0.00 5.14
2233 2355 1.152819 TCATACTCCCTCCGTCCCG 60.153 63.158 0.00 0.00 0.00 5.14
2234 2356 0.396695 TGTCATACTCCCTCCGTCCC 60.397 60.000 0.00 0.00 0.00 4.46
2235 2357 1.705873 ATGTCATACTCCCTCCGTCC 58.294 55.000 0.00 0.00 0.00 4.79
2236 2358 2.431057 ACAATGTCATACTCCCTCCGTC 59.569 50.000 0.00 0.00 0.00 4.79
2237 2359 2.168521 CACAATGTCATACTCCCTCCGT 59.831 50.000 0.00 0.00 0.00 4.69
2252 2374 4.724074 ACTTATGCAATGGACCACAATG 57.276 40.909 0.00 0.00 33.01 2.82
2259 2381 7.599998 ACATTTGAGAAAACTTATGCAATGGAC 59.400 33.333 0.00 0.00 0.00 4.02
2280 2402 7.171508 CGTATCAATCACCTGCTATGTACATTT 59.828 37.037 14.77 0.00 0.00 2.32
2288 2410 3.006967 GGTCCGTATCAATCACCTGCTAT 59.993 47.826 0.00 0.00 0.00 2.97
2295 2417 3.372954 CTCGAAGGTCCGTATCAATCAC 58.627 50.000 0.00 0.00 0.00 3.06
2362 2484 4.860802 TTGAAAGGGGATAGATCAGCAA 57.139 40.909 0.00 0.00 0.00 3.91
2367 2489 7.503566 TCAAACATGATTGAAAGGGGATAGATC 59.496 37.037 15.28 0.00 36.42 2.75
2377 2499 8.422973 TTTTGAACCTCAAACATGATTGAAAG 57.577 30.769 17.79 14.37 45.03 2.62
2417 2539 7.170998 ACTGCGTAATAGGTTGCTTATGTTATC 59.829 37.037 0.00 0.00 0.00 1.75
2492 2745 0.817654 TCGCAGAATCAGTCATCGGT 59.182 50.000 0.00 0.00 0.00 4.69
2508 2761 1.287730 CTGTTCAGCTGTGGAGTCGC 61.288 60.000 14.67 0.00 0.00 5.19
2529 2782 5.410067 TGTTCAGAAAAGAGCAAACAAAGG 58.590 37.500 0.00 0.00 0.00 3.11
2655 2909 1.136891 GCATAGGTTCCATTTGCCACC 59.863 52.381 0.00 0.00 0.00 4.61
2748 3002 4.515191 TCAGTAATGGCTTTGTGAACTGAC 59.485 41.667 10.64 0.00 37.53 3.51
2846 3105 0.178767 CTCGGGCATGATCCTGACAA 59.821 55.000 6.16 0.00 36.62 3.18
2983 3242 5.504010 CGTTCTGAAACACATTGCTTACAGT 60.504 40.000 0.00 0.00 34.93 3.55
3045 3304 7.407337 CCTGCGAATTAAAAGGTAAGATACAC 58.593 38.462 0.00 0.00 0.00 2.90
3056 3315 2.487762 TGTCCAGCCTGCGAATTAAAAG 59.512 45.455 0.00 0.00 0.00 2.27
3061 3320 0.957395 CAGTGTCCAGCCTGCGAATT 60.957 55.000 0.00 0.00 0.00 2.17
3064 3323 4.007644 CCAGTGTCCAGCCTGCGA 62.008 66.667 0.00 0.00 0.00 5.10
3065 3324 4.320456 ACCAGTGTCCAGCCTGCG 62.320 66.667 0.00 0.00 0.00 5.18
3109 3368 4.199432 AGACAGAGGATTACAGCAACAG 57.801 45.455 0.00 0.00 0.00 3.16
3197 3456 5.059465 GCTTATAGTTTGCGCGTAGTCTATC 59.941 44.000 19.57 8.35 0.00 2.08
3198 3457 4.916249 GCTTATAGTTTGCGCGTAGTCTAT 59.084 41.667 19.77 19.77 0.00 1.98
3286 3606 1.289800 GGAGCGTTCGGGTTCAGAAC 61.290 60.000 4.52 4.52 43.16 3.01
3301 3621 0.520404 CAGTGTCAGTTGCATGGAGC 59.480 55.000 0.00 0.00 45.96 4.70
3373 3700 7.331193 ACAAATTGTGGAGTCTTTCGTATCTAC 59.669 37.037 0.00 0.00 0.00 2.59
3482 3878 2.972144 GCATGTAACCGCGGTGCAA 61.972 57.895 34.95 20.53 35.93 4.08
3489 3885 4.458164 GCAACTGCATGTAACCGC 57.542 55.556 0.00 0.00 41.59 5.68
3547 4021 9.127277 ACTTTGTTCATGGTTAAAGCTTTACTA 57.873 29.630 18.45 11.74 34.38 1.82
3563 4037 9.783256 GTTTAGAACTGTGTAAACTTTGTTCAT 57.217 29.630 14.36 6.91 39.33 2.57
3575 4049 4.124238 GGTGTGCTGTTTAGAACTGTGTA 58.876 43.478 0.00 0.00 33.25 2.90
3576 4050 2.943033 GGTGTGCTGTTTAGAACTGTGT 59.057 45.455 0.00 0.00 33.25 3.72
3583 4057 4.523083 AGTTTTCAGGTGTGCTGTTTAGA 58.477 39.130 0.00 0.00 0.00 2.10
3723 4223 3.496884 GCACCGTATGAACTGTCAGAAAA 59.503 43.478 6.91 0.00 37.14 2.29
4107 4607 7.490402 ACAAAATGATGTTACTACTACTACCGC 59.510 37.037 0.00 0.00 0.00 5.68
4108 4608 8.804743 CACAAAATGATGTTACTACTACTACCG 58.195 37.037 0.00 0.00 0.00 4.02
4109 4609 9.865321 TCACAAAATGATGTTACTACTACTACC 57.135 33.333 0.00 0.00 29.99 3.18
4170 4670 2.015736 AGAACAAGGAGCTGCATACG 57.984 50.000 8.35 0.00 0.00 3.06
4171 4671 3.181516 CGAAAGAACAAGGAGCTGCATAC 60.182 47.826 8.35 0.00 0.00 2.39
4172 4672 3.002791 CGAAAGAACAAGGAGCTGCATA 58.997 45.455 8.35 0.00 0.00 3.14
4213 4715 6.071896 TCGTCTCAATGAGATAAAGTCACACT 60.072 38.462 16.68 0.00 40.98 3.55
4276 4784 3.450578 GTCGTCCGCAAAACATATCCTA 58.549 45.455 0.00 0.00 0.00 2.94
4293 4801 2.036387 TGATCATTATCCGGTGGTCGT 58.964 47.619 0.00 0.00 37.11 4.34
4321 4849 1.036707 AGCTCTCTCGTATCCTTGCC 58.963 55.000 0.00 0.00 0.00 4.52
4322 4850 2.880963 AAGCTCTCTCGTATCCTTGC 57.119 50.000 0.00 0.00 0.00 4.01
4350 4880 4.383351 GTCGACTGAGACTTAGCAAAACTC 59.617 45.833 8.70 0.00 38.09 3.01
4368 4898 6.089016 TGAGACATAACGAAATTTCAGTCGAC 59.911 38.462 17.99 7.70 39.64 4.20
4379 4909 3.857665 GCATCGACTGAGACATAACGAAA 59.142 43.478 0.00 0.00 33.77 3.46
4382 4912 3.071786 AGCATCGACTGAGACATAACG 57.928 47.619 0.00 0.00 0.00 3.18
4392 4922 5.784750 TCAAAGAAATGTAGCATCGACTG 57.215 39.130 0.00 0.00 0.00 3.51
4404 4934 7.843490 ATCTCCATGCAAAATCAAAGAAATG 57.157 32.000 0.00 0.00 0.00 2.32
4408 4938 5.183713 ACGAATCTCCATGCAAAATCAAAGA 59.816 36.000 0.00 0.00 0.00 2.52
4415 4945 6.976088 TCTTTTTACGAATCTCCATGCAAAA 58.024 32.000 0.00 0.00 0.00 2.44
4419 4949 8.466086 AATTTTCTTTTTACGAATCTCCATGC 57.534 30.769 0.00 0.00 0.00 4.06
4420 4950 9.846248 AGAATTTTCTTTTTACGAATCTCCATG 57.154 29.630 0.00 0.00 32.55 3.66
4474 5004 8.982723 AGTCTTAATCAAGTGACATACTGGTAT 58.017 33.333 0.00 0.00 40.26 2.73
4475 5005 8.362464 AGTCTTAATCAAGTGACATACTGGTA 57.638 34.615 0.00 0.00 40.26 3.25
4476 5006 7.246171 AGTCTTAATCAAGTGACATACTGGT 57.754 36.000 0.00 0.00 40.26 4.00
4477 5007 7.065085 CCAAGTCTTAATCAAGTGACATACTGG 59.935 40.741 0.00 0.00 40.26 4.00
4478 5008 7.604164 ACCAAGTCTTAATCAAGTGACATACTG 59.396 37.037 0.00 0.00 40.26 2.74
4479 5009 7.680730 ACCAAGTCTTAATCAAGTGACATACT 58.319 34.615 0.00 0.00 42.89 2.12
4480 5010 7.907214 ACCAAGTCTTAATCAAGTGACATAC 57.093 36.000 0.00 0.00 33.20 2.39
4482 5012 8.918202 TTAACCAAGTCTTAATCAAGTGACAT 57.082 30.769 0.00 0.00 33.20 3.06
4483 5013 7.990886 ACTTAACCAAGTCTTAATCAAGTGACA 59.009 33.333 0.00 0.00 41.25 3.58
4484 5014 8.379457 ACTTAACCAAGTCTTAATCAAGTGAC 57.621 34.615 0.00 0.00 41.25 3.67
4517 5047 1.399089 GAGTGCGACTAGGTCTCAGTC 59.601 57.143 8.91 8.91 39.43 3.51
4518 5048 1.003812 AGAGTGCGACTAGGTCTCAGT 59.996 52.381 0.00 0.00 34.24 3.41
4519 5049 1.745232 AGAGTGCGACTAGGTCTCAG 58.255 55.000 0.00 0.00 27.59 3.35
4520 5050 2.201921 AAGAGTGCGACTAGGTCTCA 57.798 50.000 0.00 0.00 0.00 3.27
4521 5051 2.229302 ACAAAGAGTGCGACTAGGTCTC 59.771 50.000 0.00 0.00 0.00 3.36
4522 5052 2.240279 ACAAAGAGTGCGACTAGGTCT 58.760 47.619 0.00 0.00 0.00 3.85
4523 5053 2.726832 ACAAAGAGTGCGACTAGGTC 57.273 50.000 0.00 0.00 0.00 3.85
4524 5054 2.102588 ACAACAAAGAGTGCGACTAGGT 59.897 45.455 0.00 0.00 0.00 3.08
4525 5055 2.755650 ACAACAAAGAGTGCGACTAGG 58.244 47.619 0.00 0.00 0.00 3.02
4526 5056 4.795970 AAACAACAAAGAGTGCGACTAG 57.204 40.909 0.00 0.00 0.00 2.57
4527 5057 4.632251 TCAAAACAACAAAGAGTGCGACTA 59.368 37.500 0.00 0.00 0.00 2.59
4528 5058 3.438781 TCAAAACAACAAAGAGTGCGACT 59.561 39.130 0.00 0.00 0.00 4.18
4529 5059 3.753842 TCAAAACAACAAAGAGTGCGAC 58.246 40.909 0.00 0.00 0.00 5.19
4530 5060 4.630894 ATCAAAACAACAAAGAGTGCGA 57.369 36.364 0.00 0.00 0.00 5.10
4531 5061 4.797868 TCAATCAAAACAACAAAGAGTGCG 59.202 37.500 0.00 0.00 0.00 5.34
4532 5062 6.833342 ATCAATCAAAACAACAAAGAGTGC 57.167 33.333 0.00 0.00 0.00 4.40
4534 5064 9.313118 GGTTAATCAATCAAAACAACAAAGAGT 57.687 29.630 0.00 0.00 0.00 3.24
4535 5065 9.311916 TGGTTAATCAATCAAAACAACAAAGAG 57.688 29.630 0.00 0.00 0.00 2.85
4536 5066 9.311916 CTGGTTAATCAATCAAAACAACAAAGA 57.688 29.630 0.00 0.00 0.00 2.52
4537 5067 8.063630 GCTGGTTAATCAATCAAAACAACAAAG 58.936 33.333 0.00 0.00 0.00 2.77
4538 5068 7.550551 TGCTGGTTAATCAATCAAAACAACAAA 59.449 29.630 0.00 0.00 0.00 2.83
4539 5069 7.010923 GTGCTGGTTAATCAATCAAAACAACAA 59.989 33.333 0.00 0.00 0.00 2.83
4540 5070 6.478344 GTGCTGGTTAATCAATCAAAACAACA 59.522 34.615 0.00 0.00 0.00 3.33
4541 5071 6.073819 GGTGCTGGTTAATCAATCAAAACAAC 60.074 38.462 0.00 0.00 0.00 3.32
4542 5072 5.988561 GGTGCTGGTTAATCAATCAAAACAA 59.011 36.000 0.00 0.00 0.00 2.83
4543 5073 5.304101 AGGTGCTGGTTAATCAATCAAAACA 59.696 36.000 0.00 0.00 0.00 2.83
4544 5074 5.783111 AGGTGCTGGTTAATCAATCAAAAC 58.217 37.500 0.00 0.00 0.00 2.43
4545 5075 7.450014 TCTTAGGTGCTGGTTAATCAATCAAAA 59.550 33.333 0.00 0.00 0.00 2.44
4546 5076 6.945435 TCTTAGGTGCTGGTTAATCAATCAAA 59.055 34.615 0.00 0.00 0.00 2.69
4547 5077 6.480763 TCTTAGGTGCTGGTTAATCAATCAA 58.519 36.000 0.00 0.00 0.00 2.57
4594 5127 2.124983 TCTGCGCCTCTTGATGGC 60.125 61.111 4.18 0.00 46.42 4.40
4613 5157 5.970317 TGAAGCAAATGTGATCTTCATGT 57.030 34.783 2.71 0.00 39.70 3.21
4677 5310 5.047943 TGACTCCTCTAGAACTGCTTTGTAC 60.048 44.000 0.00 0.00 0.00 2.90
4730 5366 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4731 5367 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4732 5368 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4733 5369 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4734 5370 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4735 5371 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4736 5372 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4737 5373 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4738 5374 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4739 5375 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4740 5376 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4741 5377 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4742 5378 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4743 5379 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4744 5380 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4745 5381 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4746 5382 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4747 5383 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4748 5384 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4749 5385 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4750 5386 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
4751 5387 5.867903 AAGAGAGAGAGAGAGAGAGAGAG 57.132 47.826 0.00 0.00 0.00 3.20
4752 5388 6.213397 TCAAAAGAGAGAGAGAGAGAGAGAGA 59.787 42.308 0.00 0.00 0.00 3.10
4753 5389 6.409704 TCAAAAGAGAGAGAGAGAGAGAGAG 58.590 44.000 0.00 0.00 0.00 3.20
4754 5390 6.373005 TCAAAAGAGAGAGAGAGAGAGAGA 57.627 41.667 0.00 0.00 0.00 3.10
4755 5391 7.636150 AATCAAAAGAGAGAGAGAGAGAGAG 57.364 40.000 0.00 0.00 0.00 3.20
4756 5392 8.421249 AAAATCAAAAGAGAGAGAGAGAGAGA 57.579 34.615 0.00 0.00 0.00 3.10
4757 5393 8.526147 AGAAAATCAAAAGAGAGAGAGAGAGAG 58.474 37.037 0.00 0.00 0.00 3.20
4758 5394 8.421249 AGAAAATCAAAAGAGAGAGAGAGAGA 57.579 34.615 0.00 0.00 0.00 3.10
4777 5413 8.940952 CGTCAAAGAGAAGGAGAATAAGAAAAT 58.059 33.333 0.00 0.00 0.00 1.82
4785 5421 3.971245 AGCGTCAAAGAGAAGGAGAAT 57.029 42.857 0.00 0.00 0.00 2.40
4844 5480 0.317436 GCTCGATCCGCTAGACAGTG 60.317 60.000 0.00 0.00 0.00 3.66
4867 5503 2.472695 AGCTCCATGTTAAAGCGTCA 57.527 45.000 0.00 0.00 40.95 4.35
4915 5551 5.390145 GCAAGTGTACATTTTGGTACTACGG 60.390 44.000 18.81 1.05 43.17 4.02
4933 5569 1.008538 GCCAAACACCGAGCAAGTG 60.009 57.895 0.00 0.00 41.15 3.16
4934 5570 2.193536 GGCCAAACACCGAGCAAGT 61.194 57.895 0.00 0.00 0.00 3.16
4935 5571 1.898574 AGGCCAAACACCGAGCAAG 60.899 57.895 5.01 0.00 0.00 4.01
4936 5572 2.192861 CAGGCCAAACACCGAGCAA 61.193 57.895 5.01 0.00 0.00 3.91
4937 5573 2.594303 CAGGCCAAACACCGAGCA 60.594 61.111 5.01 0.00 0.00 4.26
4938 5574 3.365265 CCAGGCCAAACACCGAGC 61.365 66.667 5.01 0.00 0.00 5.03
4939 5575 1.672356 CTCCAGGCCAAACACCGAG 60.672 63.158 5.01 0.00 0.00 4.63
4940 5576 2.144078 TCTCCAGGCCAAACACCGA 61.144 57.895 5.01 0.00 0.00 4.69
4941 5577 1.966451 GTCTCCAGGCCAAACACCG 60.966 63.158 5.01 0.00 0.00 4.94
4942 5578 1.966451 CGTCTCCAGGCCAAACACC 60.966 63.158 5.01 0.00 0.00 4.16
4943 5579 1.966451 CCGTCTCCAGGCCAAACAC 60.966 63.158 5.01 0.00 0.00 3.32
4944 5580 2.429930 CCGTCTCCAGGCCAAACA 59.570 61.111 5.01 0.00 0.00 2.83
4945 5581 2.359975 CCCGTCTCCAGGCCAAAC 60.360 66.667 5.01 0.00 0.00 2.93
4946 5582 4.344865 GCCCGTCTCCAGGCCAAA 62.345 66.667 5.01 0.00 43.76 3.28
4951 5587 4.227134 CCGATGCCCGTCTCCAGG 62.227 72.222 0.00 0.00 36.31 4.45
4952 5588 2.032860 AATCCGATGCCCGTCTCCAG 62.033 60.000 0.00 0.00 36.31 3.86
4953 5589 2.063979 AATCCGATGCCCGTCTCCA 61.064 57.895 0.00 0.00 36.31 3.86
4954 5590 1.595382 CAATCCGATGCCCGTCTCC 60.595 63.158 0.00 0.00 36.31 3.71
4955 5591 2.247437 GCAATCCGATGCCCGTCTC 61.247 63.158 0.00 0.00 40.49 3.36
4956 5592 2.203070 GCAATCCGATGCCCGTCT 60.203 61.111 0.00 0.00 40.49 4.18
4957 5593 2.513666 TGCAATCCGATGCCCGTC 60.514 61.111 5.55 0.00 45.83 4.79
4958 5594 2.824041 GTGCAATCCGATGCCCGT 60.824 61.111 0.00 0.00 45.83 5.28
4959 5595 2.823593 TGTGCAATCCGATGCCCG 60.824 61.111 0.00 0.00 45.83 6.13
4960 5596 1.031571 TTCTGTGCAATCCGATGCCC 61.032 55.000 0.00 0.00 45.83 5.36
4961 5597 0.810648 TTTCTGTGCAATCCGATGCC 59.189 50.000 0.00 0.00 45.83 4.40
4962 5598 2.634982 TTTTCTGTGCAATCCGATGC 57.365 45.000 0.00 1.50 46.58 3.91
4963 5599 2.919229 GCTTTTTCTGTGCAATCCGATG 59.081 45.455 0.00 0.00 0.00 3.84
4964 5600 2.557924 TGCTTTTTCTGTGCAATCCGAT 59.442 40.909 0.00 0.00 33.48 4.18
4965 5601 1.952990 TGCTTTTTCTGTGCAATCCGA 59.047 42.857 0.00 0.00 33.48 4.55
4966 5602 2.420628 TGCTTTTTCTGTGCAATCCG 57.579 45.000 0.00 0.00 33.48 4.18
4971 5607 1.138464 TGCCATTGCTTTTTCTGTGCA 59.862 42.857 0.00 0.00 38.71 4.57
4972 5608 1.868469 TGCCATTGCTTTTTCTGTGC 58.132 45.000 0.00 0.00 38.71 4.57
4973 5609 4.512198 TGAAATGCCATTGCTTTTTCTGTG 59.488 37.500 14.36 0.00 42.80 3.66
4974 5610 4.512571 GTGAAATGCCATTGCTTTTTCTGT 59.487 37.500 14.36 0.00 42.80 3.41
4975 5611 4.753107 AGTGAAATGCCATTGCTTTTTCTG 59.247 37.500 14.36 0.00 42.80 3.02
4976 5612 4.964593 AGTGAAATGCCATTGCTTTTTCT 58.035 34.783 14.36 9.39 42.80 2.52
4977 5613 5.007921 ACAAGTGAAATGCCATTGCTTTTTC 59.992 36.000 4.44 7.24 42.80 2.29
4978 5614 4.883006 ACAAGTGAAATGCCATTGCTTTTT 59.117 33.333 4.44 0.00 42.80 1.94
4979 5615 4.273969 CACAAGTGAAATGCCATTGCTTTT 59.726 37.500 2.70 2.70 44.69 2.27
4980 5616 3.810941 CACAAGTGAAATGCCATTGCTTT 59.189 39.130 0.00 0.00 38.71 3.51
4981 5617 3.395639 CACAAGTGAAATGCCATTGCTT 58.604 40.909 0.00 0.00 38.71 3.91
4982 5618 2.868839 GCACAAGTGAAATGCCATTGCT 60.869 45.455 4.04 0.00 38.71 3.91
4983 5619 1.461897 GCACAAGTGAAATGCCATTGC 59.538 47.619 4.04 0.00 33.06 3.56
4989 5625 1.734117 GGCGGCACAAGTGAAATGC 60.734 57.895 3.07 1.61 38.68 3.56
4990 5626 1.080569 GGGCGGCACAAGTGAAATG 60.081 57.895 12.47 0.00 0.00 2.32
4991 5627 2.625823 CGGGCGGCACAAGTGAAAT 61.626 57.895 12.47 0.00 0.00 2.17
4992 5628 3.283684 CGGGCGGCACAAGTGAAA 61.284 61.111 12.47 0.00 0.00 2.69
5003 5639 3.625897 TATCATCAGGCCGGGCGG 61.626 66.667 23.81 23.01 38.57 6.13
5004 5640 2.357517 GTATCATCAGGCCGGGCG 60.358 66.667 23.81 17.42 0.00 6.13
5005 5641 2.357517 CGTATCATCAGGCCGGGC 60.358 66.667 22.67 22.67 0.00 6.13
5006 5642 2.343758 CCGTATCATCAGGCCGGG 59.656 66.667 2.18 0.00 35.11 5.73
5007 5643 1.300931 CACCGTATCATCAGGCCGG 60.301 63.158 0.00 0.00 44.06 6.13
5008 5644 1.300931 CCACCGTATCATCAGGCCG 60.301 63.158 0.00 0.00 0.00 6.13
5009 5645 0.532862 CACCACCGTATCATCAGGCC 60.533 60.000 0.00 0.00 0.00 5.19
5010 5646 0.464036 TCACCACCGTATCATCAGGC 59.536 55.000 0.00 0.00 0.00 4.85
5011 5647 1.069204 CCTCACCACCGTATCATCAGG 59.931 57.143 0.00 0.00 0.00 3.86
5012 5648 1.757118 ACCTCACCACCGTATCATCAG 59.243 52.381 0.00 0.00 0.00 2.90
5013 5649 1.480545 CACCTCACCACCGTATCATCA 59.519 52.381 0.00 0.00 0.00 3.07
5014 5650 1.202533 CCACCTCACCACCGTATCATC 60.203 57.143 0.00 0.00 0.00 2.92
5015 5651 0.830648 CCACCTCACCACCGTATCAT 59.169 55.000 0.00 0.00 0.00 2.45
5016 5652 0.543410 ACCACCTCACCACCGTATCA 60.543 55.000 0.00 0.00 0.00 2.15
5017 5653 0.175073 GACCACCTCACCACCGTATC 59.825 60.000 0.00 0.00 0.00 2.24
5018 5654 1.262640 GGACCACCTCACCACCGTAT 61.263 60.000 0.00 0.00 0.00 3.06
5019 5655 1.909781 GGACCACCTCACCACCGTA 60.910 63.158 0.00 0.00 0.00 4.02
5020 5656 3.239253 GGACCACCTCACCACCGT 61.239 66.667 0.00 0.00 0.00 4.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.