Multiple sequence alignment - TraesCS6A01G327700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G327700 chr6A 100.000 2627 0 0 1 2627 560754926 560752300 0.000000e+00 4852
1 TraesCS6A01G327700 chr6A 81.649 1019 102 44 786 1733 560817345 560816341 0.000000e+00 767
2 TraesCS6A01G327700 chr6A 89.048 420 43 1 1267 1683 560829438 560829019 3.880000e-143 518
3 TraesCS6A01G327700 chr6A 73.796 519 98 24 315 801 560818097 560817585 1.250000e-38 171
4 TraesCS6A01G327700 chr6A 91.489 94 7 1 1737 1829 595071424 595071517 7.630000e-26 128
5 TraesCS6A01G327700 chr6B 88.453 1810 122 30 1 1731 630467281 630465480 0.000000e+00 2104
6 TraesCS6A01G327700 chr6B 90.268 411 40 0 1270 1680 630529585 630529175 2.980000e-149 538
7 TraesCS6A01G327700 chr6B 88.403 457 32 11 1264 1708 630505031 630504584 4.980000e-147 531
8 TraesCS6A01G327700 chr6B 88.654 379 40 1 1267 1642 630568740 630568362 2.380000e-125 459
9 TraesCS6A01G327700 chr6B 80.473 338 33 16 786 1094 630505545 630505212 7.310000e-56 228
10 TraesCS6A01G327700 chr6D 94.654 636 22 6 1097 1731 418313328 418312704 0.000000e+00 976
11 TraesCS6A01G327700 chr6D 87.712 708 49 17 413 1094 418314056 418313361 0.000000e+00 791
12 TraesCS6A01G327700 chr6D 90.238 420 37 2 1267 1682 418530982 418530563 1.780000e-151 545
13 TraesCS6A01G327700 chr6D 87.794 467 49 6 1270 1733 418524224 418523763 8.270000e-150 540
14 TraesCS6A01G327700 chr6D 79.288 618 65 22 1848 2449 418312642 418312072 8.880000e-100 374
15 TraesCS6A01G327700 chr6D 75.672 670 94 30 786 1397 418463510 418462852 1.200000e-68 270
16 TraesCS6A01G327700 chr2B 91.579 95 8 0 1737 1831 24938848 24938754 5.900000e-27 132
17 TraesCS6A01G327700 chr4A 94.118 85 5 0 1737 1821 659629628 659629712 2.120000e-26 130
18 TraesCS6A01G327700 chr4A 91.954 87 7 0 1737 1823 12679349 12679263 3.550000e-24 122
19 TraesCS6A01G327700 chr5B 93.103 87 6 0 1735 1821 185588565 185588651 7.630000e-26 128
20 TraesCS6A01G327700 chr2A 92.941 85 6 0 1737 1821 385298779 385298863 9.870000e-25 124
21 TraesCS6A01G327700 chr2A 90.217 92 9 0 1737 1828 38343853 38343762 1.280000e-23 121
22 TraesCS6A01G327700 chr1B 92.941 85 6 0 1738 1822 583757258 583757342 9.870000e-25 124
23 TraesCS6A01G327700 chr3D 89.362 94 8 2 1730 1821 560556227 560556320 1.650000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G327700 chr6A 560752300 560754926 2626 True 4852.000000 4852 100.0000 1 2627 1 chr6A.!!$R1 2626
1 TraesCS6A01G327700 chr6A 560816341 560818097 1756 True 469.000000 767 77.7225 315 1733 2 chr6A.!!$R3 1418
2 TraesCS6A01G327700 chr6B 630465480 630467281 1801 True 2104.000000 2104 88.4530 1 1731 1 chr6B.!!$R1 1730
3 TraesCS6A01G327700 chr6B 630504584 630505545 961 True 379.500000 531 84.4380 786 1708 2 chr6B.!!$R4 922
4 TraesCS6A01G327700 chr6D 418312072 418314056 1984 True 713.666667 976 87.2180 413 2449 3 chr6D.!!$R4 2036
5 TraesCS6A01G327700 chr6D 418462852 418463510 658 True 270.000000 270 75.6720 786 1397 1 chr6D.!!$R1 611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
289 290 0.034896 AACGTCGCCCACAGAGAATT 59.965 50.0 0.0 0.0 0.0 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1839 2260 0.03601 CGGTCTCAAGGACTTGCCAT 60.036 55.0 7.18 0.0 43.97 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.040412 GGGATGTTGATAGGATCACCCC 59.960 54.545 0.00 0.00 39.39 4.95
57 58 4.965119 AATTAAGATTGCGAACACCCTC 57.035 40.909 0.00 0.00 0.00 4.30
78 79 6.004574 CCTCATCATCATCCTTCACAATCAT 58.995 40.000 0.00 0.00 0.00 2.45
114 115 3.459232 ACATCATGTCATCACCTACCG 57.541 47.619 0.00 0.00 0.00 4.02
115 116 2.138320 CATCATGTCATCACCTACCGC 58.862 52.381 0.00 0.00 0.00 5.68
117 118 1.552792 TCATGTCATCACCTACCGCAA 59.447 47.619 0.00 0.00 0.00 4.85
163 164 4.548726 GCAAGTTCGTGAACAATTGCAAAG 60.549 41.667 23.62 1.36 44.71 2.77
165 166 5.493133 AGTTCGTGAACAATTGCAAAGTA 57.507 34.783 14.61 0.00 43.47 2.24
169 170 5.448438 TCGTGAACAATTGCAAAGTATGTC 58.552 37.500 1.71 1.20 0.00 3.06
171 172 5.565259 CGTGAACAATTGCAAAGTATGTCTC 59.435 40.000 1.71 7.85 0.00 3.36
180 181 5.399858 TGCAAAGTATGTCTCGAGTACTTC 58.600 41.667 20.81 13.24 37.60 3.01
209 210 6.323482 TGATCTCTTCACATCCTTCCTAAGAG 59.677 42.308 0.00 0.00 40.69 2.85
213 214 6.702329 TCTTCACATCCTTCCTAAGAGTTTC 58.298 40.000 0.00 0.00 0.00 2.78
222 223 5.106908 CCTTCCTAAGAGTTTCTTGCTTTCG 60.107 44.000 1.71 0.00 37.29 3.46
289 290 0.034896 AACGTCGCCCACAGAGAATT 59.965 50.000 0.00 0.00 0.00 2.17
325 327 0.893270 TGGTGCCACCATGTTGTAGC 60.893 55.000 13.83 0.00 44.79 3.58
347 349 4.206375 CCATGCCCATTGATGTTGTAGTA 58.794 43.478 0.00 0.00 0.00 1.82
406 418 3.517602 GTGTGTGCGGTGACATTATCTA 58.482 45.455 0.00 0.00 0.00 1.98
415 427 5.622460 GCGGTGACATTATCTATAGTGGGAG 60.622 48.000 0.00 0.00 0.00 4.30
422 434 6.849697 ACATTATCTATAGTGGGAGGGTTTCA 59.150 38.462 0.00 0.00 0.00 2.69
427 439 3.646715 TGGGAGGGTTTCAGGGCG 61.647 66.667 0.00 0.00 0.00 6.13
433 446 3.122971 GGTTTCAGGGCGGCGTAC 61.123 66.667 9.37 1.33 0.00 3.67
438 451 4.524318 CAGGGCGGCGTACGGATT 62.524 66.667 18.39 0.00 44.51 3.01
467 481 3.565214 TCTTGGCGGCAAGGTGGA 61.565 61.111 40.61 25.27 33.26 4.02
472 486 4.785453 GCGGCAAGGTGGAGAGGG 62.785 72.222 0.00 0.00 0.00 4.30
478 492 1.650528 CAAGGTGGAGAGGGAAGTCT 58.349 55.000 0.00 0.00 0.00 3.24
539 562 1.717077 AGTCAGGGTCCTCTAGTGGAA 59.283 52.381 15.01 0.00 37.93 3.53
542 565 1.204941 CAGGGTCCTCTAGTGGAAACG 59.795 57.143 15.01 1.46 37.93 3.60
543 566 1.076677 AGGGTCCTCTAGTGGAAACGA 59.923 52.381 15.01 0.00 37.93 3.85
552 575 3.764434 TCTAGTGGAAACGAAGAGCAGAT 59.236 43.478 0.00 0.00 0.00 2.90
564 588 0.908198 GAGCAGATGAAGAGGGGTGT 59.092 55.000 0.00 0.00 0.00 4.16
569 593 1.834263 AGATGAAGAGGGGTGTAGTGC 59.166 52.381 0.00 0.00 0.00 4.40
572 597 2.240162 GAAGAGGGGTGTAGTGCGGG 62.240 65.000 0.00 0.00 0.00 6.13
611 636 5.687166 ATAAGTTTTCTACATGGGACCGA 57.313 39.130 0.00 0.00 0.00 4.69
612 637 3.611766 AGTTTTCTACATGGGACCGAG 57.388 47.619 0.00 0.00 0.00 4.63
633 658 0.036858 TGTTCGATCCAACATGGCGA 60.037 50.000 1.36 0.00 37.47 5.54
657 685 5.953571 ACAGTTCAAACCCTATTTCTTCCT 58.046 37.500 0.00 0.00 0.00 3.36
659 687 6.839134 ACAGTTCAAACCCTATTTCTTCCTTT 59.161 34.615 0.00 0.00 0.00 3.11
679 707 2.499303 AATTTGAGGCGGGACTGGGG 62.499 60.000 0.00 0.00 0.00 4.96
693 722 2.603776 GGGGACACCGGACAGTCT 60.604 66.667 9.46 0.00 37.78 3.24
711 760 3.623365 TGGACTATCCAGAGCAGCT 57.377 52.632 0.00 0.00 42.67 4.24
718 767 3.577848 ACTATCCAGAGCAGCTCATTAGG 59.422 47.826 24.64 18.51 32.06 2.69
719 768 1.126488 TCCAGAGCAGCTCATTAGGG 58.874 55.000 24.64 15.95 32.06 3.53
727 776 5.074239 AGAGCAGCTCATTAGGGGATATTTT 59.926 40.000 24.64 0.00 32.06 1.82
736 785 0.887836 GGGGATATTTTCGGACCGGC 60.888 60.000 15.25 0.00 0.00 6.13
755 804 1.391933 CCAAATAGGGCGAAAGGGGC 61.392 60.000 0.00 0.00 0.00 5.80
825 1133 8.740123 TCTAGAGAATCGTCTACAAATCTTCT 57.260 34.615 0.00 0.00 42.67 2.85
846 1154 8.448816 TCTTCTCCTACTTACATGATCCAGATA 58.551 37.037 0.00 0.00 0.00 1.98
847 1155 9.253832 CTTCTCCTACTTACATGATCCAGATAT 57.746 37.037 0.00 0.00 0.00 1.63
867 1185 7.225538 CAGATATAGTAAAACAGTTGCAGAGGG 59.774 40.741 0.00 0.00 0.00 4.30
1026 1365 1.666872 CAAGCAGGCAAGCAAAGGC 60.667 57.895 4.78 0.00 41.61 4.35
1061 1400 4.667935 TTCCCTTCCCCGCCTCCA 62.668 66.667 0.00 0.00 0.00 3.86
1178 1556 0.591170 CCACACACACCCATCGAAAC 59.409 55.000 0.00 0.00 0.00 2.78
1193 1571 4.682778 TCGAAACCTCTTCTTCTTCCAA 57.317 40.909 0.00 0.00 0.00 3.53
1250 1661 2.446802 CCTCCCCTCCCCTGTAGC 60.447 72.222 0.00 0.00 0.00 3.58
1294 1705 2.295909 TCTTGGATTGGTTTTTCGGCAG 59.704 45.455 0.00 0.00 0.00 4.85
1726 2147 4.928601 TCCTGTGTATGTTATACGCTGTC 58.071 43.478 12.17 0.00 0.00 3.51
1731 2152 5.126545 TGTGTATGTTATACGCTGTCTCCTT 59.873 40.000 12.17 0.00 0.00 3.36
1733 2154 3.795623 TGTTATACGCTGTCTCCTTCC 57.204 47.619 0.00 0.00 0.00 3.46
1734 2155 3.093814 TGTTATACGCTGTCTCCTTCCA 58.906 45.455 0.00 0.00 0.00 3.53
1735 2156 3.512329 TGTTATACGCTGTCTCCTTCCAA 59.488 43.478 0.00 0.00 0.00 3.53
1739 2160 2.180276 ACGCTGTCTCCTTCCAATACT 58.820 47.619 0.00 0.00 0.00 2.12
1740 2161 2.166664 ACGCTGTCTCCTTCCAATACTC 59.833 50.000 0.00 0.00 0.00 2.59
1741 2162 2.482142 CGCTGTCTCCTTCCAATACTCC 60.482 54.545 0.00 0.00 0.00 3.85
1742 2163 2.158885 GCTGTCTCCTTCCAATACTCCC 60.159 54.545 0.00 0.00 0.00 4.30
1743 2164 3.379452 CTGTCTCCTTCCAATACTCCCT 58.621 50.000 0.00 0.00 0.00 4.20
1744 2165 3.375699 TGTCTCCTTCCAATACTCCCTC 58.624 50.000 0.00 0.00 0.00 4.30
1745 2166 2.701423 GTCTCCTTCCAATACTCCCTCC 59.299 54.545 0.00 0.00 0.00 4.30
1746 2167 1.689273 CTCCTTCCAATACTCCCTCCG 59.311 57.143 0.00 0.00 0.00 4.63
1747 2168 1.007963 TCCTTCCAATACTCCCTCCGT 59.992 52.381 0.00 0.00 0.00 4.69
1748 2169 2.245546 TCCTTCCAATACTCCCTCCGTA 59.754 50.000 0.00 0.00 0.00 4.02
1749 2170 3.036091 CCTTCCAATACTCCCTCCGTAA 58.964 50.000 0.00 0.00 0.00 3.18
1750 2171 3.453353 CCTTCCAATACTCCCTCCGTAAA 59.547 47.826 0.00 0.00 0.00 2.01
1751 2172 4.439968 CTTCCAATACTCCCTCCGTAAAC 58.560 47.826 0.00 0.00 0.00 2.01
1752 2173 3.716431 TCCAATACTCCCTCCGTAAACT 58.284 45.455 0.00 0.00 0.00 2.66
1753 2174 4.870636 TCCAATACTCCCTCCGTAAACTA 58.129 43.478 0.00 0.00 0.00 2.24
1754 2175 5.271598 TCCAATACTCCCTCCGTAAACTAA 58.728 41.667 0.00 0.00 0.00 2.24
1755 2176 5.901276 TCCAATACTCCCTCCGTAAACTAAT 59.099 40.000 0.00 0.00 0.00 1.73
1756 2177 7.068702 TCCAATACTCCCTCCGTAAACTAATA 58.931 38.462 0.00 0.00 0.00 0.98
1757 2178 7.731688 TCCAATACTCCCTCCGTAAACTAATAT 59.268 37.037 0.00 0.00 0.00 1.28
1758 2179 9.028284 CCAATACTCCCTCCGTAAACTAATATA 57.972 37.037 0.00 0.00 0.00 0.86
1836 2257 7.437862 CAGAGGGAGTACGTACTAGTTAAGTAG 59.562 44.444 27.44 14.62 41.42 2.57
1837 2258 6.052360 AGGGAGTACGTACTAGTTAAGTAGC 58.948 44.000 27.44 11.13 41.42 3.58
1838 2259 6.052360 GGGAGTACGTACTAGTTAAGTAGCT 58.948 44.000 27.44 1.42 41.42 3.32
1839 2260 7.070074 AGGGAGTACGTACTAGTTAAGTAGCTA 59.930 40.741 27.44 6.44 41.42 3.32
1841 2262 8.707839 GGAGTACGTACTAGTTAAGTAGCTATG 58.292 40.741 27.44 13.92 41.42 2.23
1842 2263 8.600449 AGTACGTACTAGTTAAGTAGCTATGG 57.400 38.462 26.36 5.43 41.42 2.74
1843 2264 6.311055 ACGTACTAGTTAAGTAGCTATGGC 57.689 41.667 15.89 0.00 41.42 4.40
1844 2265 5.824624 ACGTACTAGTTAAGTAGCTATGGCA 59.175 40.000 15.89 0.00 41.42 4.92
1846 2267 6.856938 CGTACTAGTTAAGTAGCTATGGCAAG 59.143 42.308 15.89 0.00 41.42 4.01
1867 2317 2.094649 GTCCTTGAGACCGTAGACTTGG 60.095 54.545 0.00 0.00 39.84 3.61
1868 2318 2.168496 CCTTGAGACCGTAGACTTGGA 58.832 52.381 0.74 0.00 0.00 3.53
1869 2319 2.761208 CCTTGAGACCGTAGACTTGGAT 59.239 50.000 0.74 0.00 0.00 3.41
1877 2327 7.287005 TGAGACCGTAGACTTGGATGTAATAAT 59.713 37.037 0.74 0.00 0.00 1.28
1879 2329 6.522054 ACCGTAGACTTGGATGTAATAATGG 58.478 40.000 0.74 0.00 0.00 3.16
1885 2335 8.310122 AGACTTGGATGTAATAATGGCAAAAT 57.690 30.769 0.00 0.00 0.00 1.82
1888 2338 8.707449 ACTTGGATGTAATAATGGCAAAATCAT 58.293 29.630 0.00 0.00 0.00 2.45
1904 2354 6.293618 CAAAATCATGCATCAAACAGTTTCG 58.706 36.000 0.00 0.00 0.00 3.46
1905 2355 4.771590 ATCATGCATCAAACAGTTTCGT 57.228 36.364 0.00 0.00 0.00 3.85
1908 2358 2.020720 TGCATCAAACAGTTTCGTGGT 58.979 42.857 0.00 0.00 0.00 4.16
1944 2394 7.984617 TCAAAGGAATTTTACAGAACTTTTGGG 59.015 33.333 0.00 0.00 0.00 4.12
1945 2395 6.419484 AGGAATTTTACAGAACTTTTGGGG 57.581 37.500 0.00 0.00 0.00 4.96
1946 2396 5.903010 AGGAATTTTACAGAACTTTTGGGGT 59.097 36.000 0.00 0.00 0.00 4.95
1951 2401 9.554395 AATTTTACAGAACTTTTGGGGTATTTG 57.446 29.630 0.00 0.00 0.00 2.32
1955 2405 6.993079 ACAGAACTTTTGGGGTATTTGAATC 58.007 36.000 0.00 0.00 0.00 2.52
1961 2411 7.475299 ACTTTTGGGGTATTTGAATCCTTAGA 58.525 34.615 0.00 0.00 0.00 2.10
1974 2424 7.654022 TGAATCCTTAGAAACCTTTTTGTGT 57.346 32.000 0.00 0.00 0.00 3.72
2007 2469 5.874810 TGATTCACCTTCAGAATTTCCGTAG 59.125 40.000 0.00 0.00 35.93 3.51
2063 2525 1.608283 CCAACCACTCGAACCTCTTCC 60.608 57.143 0.00 0.00 0.00 3.46
2068 2530 3.838903 ACCACTCGAACCTCTTCCTAAAT 59.161 43.478 0.00 0.00 0.00 1.40
2088 2551 6.990341 AAATTTCATTGCTTTTCCTATGCC 57.010 33.333 0.00 0.00 0.00 4.40
2093 2556 4.897076 TCATTGCTTTTCCTATGCCATCAT 59.103 37.500 0.00 0.00 36.73 2.45
2094 2557 4.924305 TTGCTTTTCCTATGCCATCATC 57.076 40.909 0.00 0.00 34.22 2.92
2096 2559 2.560105 GCTTTTCCTATGCCATCATCCC 59.440 50.000 0.00 0.00 34.22 3.85
2100 2564 1.556451 TCCTATGCCATCATCCCATCG 59.444 52.381 0.00 0.00 34.22 3.84
2118 2582 4.141937 CCATCGAACACTCCTTCATCCTAA 60.142 45.833 0.00 0.00 0.00 2.69
2127 2591 7.331791 ACACTCCTTCATCCTAATTCTTGTAC 58.668 38.462 0.00 0.00 0.00 2.90
2129 2593 7.708752 CACTCCTTCATCCTAATTCTTGTACTC 59.291 40.741 0.00 0.00 0.00 2.59
2133 2597 7.497249 CCTTCATCCTAATTCTTGTACTCCTTG 59.503 40.741 0.00 0.00 0.00 3.61
2134 2598 6.889198 TCATCCTAATTCTTGTACTCCTTGG 58.111 40.000 0.00 0.00 0.00 3.61
2135 2599 5.693769 TCCTAATTCTTGTACTCCTTGGG 57.306 43.478 0.00 0.00 0.00 4.12
2136 2600 5.098663 TCCTAATTCTTGTACTCCTTGGGT 58.901 41.667 0.00 0.00 0.00 4.51
2137 2601 6.266080 TCCTAATTCTTGTACTCCTTGGGTA 58.734 40.000 0.00 0.00 0.00 3.69
2138 2602 6.383147 TCCTAATTCTTGTACTCCTTGGGTAG 59.617 42.308 0.00 0.00 0.00 3.18
2139 2603 6.156429 CCTAATTCTTGTACTCCTTGGGTAGT 59.844 42.308 0.00 0.00 0.00 2.73
2140 2604 5.678955 ATTCTTGTACTCCTTGGGTAGTC 57.321 43.478 0.00 0.00 0.00 2.59
2141 2605 3.438183 TCTTGTACTCCTTGGGTAGTCC 58.562 50.000 0.00 0.00 0.00 3.85
2142 2606 3.077088 TCTTGTACTCCTTGGGTAGTCCT 59.923 47.826 0.00 0.00 36.20 3.85
2143 2607 3.555117 TGTACTCCTTGGGTAGTCCTT 57.445 47.619 0.00 0.00 36.20 3.36
2144 2608 3.865571 TGTACTCCTTGGGTAGTCCTTT 58.134 45.455 0.00 0.00 36.20 3.11
2145 2609 4.237018 TGTACTCCTTGGGTAGTCCTTTT 58.763 43.478 0.00 0.00 36.20 2.27
2146 2610 5.405279 TGTACTCCTTGGGTAGTCCTTTTA 58.595 41.667 0.00 0.00 36.20 1.52
2147 2611 5.482878 TGTACTCCTTGGGTAGTCCTTTTAG 59.517 44.000 0.00 0.00 36.20 1.85
2148 2612 4.500452 ACTCCTTGGGTAGTCCTTTTAGT 58.500 43.478 0.00 0.00 36.20 2.24
2161 2625 7.800300 AGTCCTTTTAGTTCTGTAGGATTCT 57.200 36.000 0.00 0.00 37.35 2.40
2163 2627 8.751242 AGTCCTTTTAGTTCTGTAGGATTCTAC 58.249 37.037 3.99 3.99 44.57 2.59
2172 2636 2.772287 GTAGGATTCTACAGGGCATGC 58.228 52.381 9.90 9.90 43.95 4.06
2186 2650 3.459598 AGGGCATGCCACTCTAATCTTAA 59.540 43.478 36.56 0.00 37.98 1.85
2187 2651 4.105377 AGGGCATGCCACTCTAATCTTAAT 59.895 41.667 36.56 4.46 37.98 1.40
2188 2652 4.829492 GGGCATGCCACTCTAATCTTAATT 59.171 41.667 36.56 0.00 37.98 1.40
2243 2708 7.979444 TGTGAATTAAAGAGACCCTTAACTG 57.021 36.000 0.00 0.00 34.00 3.16
2245 2710 7.996644 TGTGAATTAAAGAGACCCTTAACTGTT 59.003 33.333 0.00 0.00 34.00 3.16
2246 2711 8.504815 GTGAATTAAAGAGACCCTTAACTGTTC 58.495 37.037 0.00 0.00 34.00 3.18
2247 2712 8.215050 TGAATTAAAGAGACCCTTAACTGTTCA 58.785 33.333 0.00 0.00 34.00 3.18
2248 2713 8.622948 AATTAAAGAGACCCTTAACTGTTCAG 57.377 34.615 0.00 0.00 34.00 3.02
2249 2714 4.625607 AAGAGACCCTTAACTGTTCAGG 57.374 45.455 12.79 12.79 32.24 3.86
2250 2715 3.858135 AGAGACCCTTAACTGTTCAGGA 58.142 45.455 19.77 0.00 0.00 3.86
2251 2716 3.835395 AGAGACCCTTAACTGTTCAGGAG 59.165 47.826 19.77 12.89 0.00 3.69
2252 2717 3.833070 GAGACCCTTAACTGTTCAGGAGA 59.167 47.826 19.77 0.00 0.00 3.71
2253 2718 3.835395 AGACCCTTAACTGTTCAGGAGAG 59.165 47.826 19.77 7.85 0.00 3.20
2262 2727 9.884465 CTTAACTGTTCAGGAGAGTTTATTTTG 57.116 33.333 0.00 0.00 32.27 2.44
2266 2731 7.012421 ACTGTTCAGGAGAGTTTATTTTGTGAC 59.988 37.037 4.82 0.00 0.00 3.67
2269 2734 7.873719 TCAGGAGAGTTTATTTTGTGACAAA 57.126 32.000 6.66 6.66 0.00 2.83
2286 2751 9.527157 TTGTGACAAATAATCAAGGGATAAAGA 57.473 29.630 0.00 0.00 32.09 2.52
2288 2753 9.788960 GTGACAAATAATCAAGGGATAAAGAAC 57.211 33.333 0.00 0.00 32.09 3.01
2289 2754 8.966868 TGACAAATAATCAAGGGATAAAGAACC 58.033 33.333 0.00 0.00 32.09 3.62
2290 2755 9.190317 GACAAATAATCAAGGGATAAAGAACCT 57.810 33.333 0.00 0.00 35.78 3.50
2291 2756 9.547279 ACAAATAATCAAGGGATAAAGAACCTT 57.453 29.630 0.00 0.00 45.08 3.50
2335 2800 6.371809 ACATACCACTTGTGTTACAACTTG 57.628 37.500 0.00 0.00 33.96 3.16
2338 2803 3.699038 ACCACTTGTGTTACAACTTGCAT 59.301 39.130 0.00 0.00 33.96 3.96
2339 2804 4.159506 ACCACTTGTGTTACAACTTGCATT 59.840 37.500 0.00 0.00 33.96 3.56
2366 2831 2.997980 TCCAAATCATGTACACGCCAT 58.002 42.857 0.00 0.00 0.00 4.40
2380 2845 4.090138 CACGCCATGTGCAACTTTAATA 57.910 40.909 0.00 0.00 42.70 0.98
2382 2847 5.815850 CACGCCATGTGCAACTTTAATATA 58.184 37.500 0.00 0.00 42.70 0.86
2383 2848 5.681105 CACGCCATGTGCAACTTTAATATAC 59.319 40.000 0.00 0.00 42.70 1.47
2384 2849 5.588648 ACGCCATGTGCAACTTTAATATACT 59.411 36.000 0.00 0.00 41.33 2.12
2385 2850 6.764085 ACGCCATGTGCAACTTTAATATACTA 59.236 34.615 0.00 0.00 41.33 1.82
2386 2851 7.444183 ACGCCATGTGCAACTTTAATATACTAT 59.556 33.333 0.00 0.00 41.33 2.12
2387 2852 8.931775 CGCCATGTGCAACTTTAATATACTATA 58.068 33.333 0.00 0.00 41.33 1.31
2427 2892 7.901283 TTGGACATTGTGGATGATTATTGAT 57.099 32.000 0.00 0.00 39.15 2.57
2429 2894 7.292319 TGGACATTGTGGATGATTATTGATCT 58.708 34.615 0.00 0.00 39.15 2.75
2449 2914 8.302965 TGATCTACGATGCATTTTCTATTGAG 57.697 34.615 0.00 0.00 0.00 3.02
2450 2915 8.143835 TGATCTACGATGCATTTTCTATTGAGA 58.856 33.333 0.00 0.00 0.00 3.27
2451 2916 7.700322 TCTACGATGCATTTTCTATTGAGAC 57.300 36.000 0.00 0.00 0.00 3.36
2452 2917 7.264947 TCTACGATGCATTTTCTATTGAGACA 58.735 34.615 0.00 0.00 0.00 3.41
2453 2918 6.741992 ACGATGCATTTTCTATTGAGACAA 57.258 33.333 0.00 0.00 0.00 3.18
2454 2919 7.144722 ACGATGCATTTTCTATTGAGACAAA 57.855 32.000 0.00 0.00 0.00 2.83
2455 2920 7.765307 ACGATGCATTTTCTATTGAGACAAAT 58.235 30.769 0.00 0.00 0.00 2.32
2456 2921 7.699391 ACGATGCATTTTCTATTGAGACAAATG 59.301 33.333 0.00 7.84 39.72 2.32
2457 2922 7.699391 CGATGCATTTTCTATTGAGACAAATGT 59.301 33.333 0.00 0.00 39.40 2.71
2458 2923 8.697846 ATGCATTTTCTATTGAGACAAATGTG 57.302 30.769 11.70 0.00 39.40 3.21
2459 2924 7.884257 TGCATTTTCTATTGAGACAAATGTGA 58.116 30.769 11.70 1.49 39.40 3.58
2460 2925 8.525316 TGCATTTTCTATTGAGACAAATGTGAT 58.475 29.630 11.70 0.00 39.40 3.06
2461 2926 9.362539 GCATTTTCTATTGAGACAAATGTGATT 57.637 29.630 11.70 0.00 39.40 2.57
2464 2929 9.912634 TTTTCTATTGAGACAAATGTGATTTCC 57.087 29.630 0.00 0.00 0.00 3.13
2465 2930 7.307493 TCTATTGAGACAAATGTGATTTCCG 57.693 36.000 0.00 0.00 0.00 4.30
2466 2931 5.964958 ATTGAGACAAATGTGATTTCCGT 57.035 34.783 0.00 0.00 0.00 4.69
2467 2932 8.038351 TCTATTGAGACAAATGTGATTTCCGTA 58.962 33.333 0.00 0.00 0.00 4.02
2468 2933 7.630242 ATTGAGACAAATGTGATTTCCGTAT 57.370 32.000 0.00 0.00 0.00 3.06
2469 2934 7.447374 TTGAGACAAATGTGATTTCCGTATT 57.553 32.000 0.00 0.00 0.00 1.89
2470 2935 7.447374 TGAGACAAATGTGATTTCCGTATTT 57.553 32.000 0.00 0.00 0.00 1.40
2471 2936 7.526608 TGAGACAAATGTGATTTCCGTATTTC 58.473 34.615 0.00 0.00 0.00 2.17
2472 2937 7.174080 TGAGACAAATGTGATTTCCGTATTTCA 59.826 33.333 0.00 0.00 0.00 2.69
2473 2938 7.530010 AGACAAATGTGATTTCCGTATTTCAG 58.470 34.615 0.00 0.00 0.00 3.02
2474 2939 7.174946 AGACAAATGTGATTTCCGTATTTCAGT 59.825 33.333 0.00 0.00 0.00 3.41
2475 2940 7.657336 ACAAATGTGATTTCCGTATTTCAGTT 58.343 30.769 0.00 0.00 0.00 3.16
2476 2941 8.141268 ACAAATGTGATTTCCGTATTTCAGTTT 58.859 29.630 0.00 0.00 0.00 2.66
2477 2942 9.619316 CAAATGTGATTTCCGTATTTCAGTTTA 57.381 29.630 0.00 0.00 0.00 2.01
2478 2943 9.620660 AAATGTGATTTCCGTATTTCAGTTTAC 57.379 29.630 0.00 0.00 0.00 2.01
2479 2944 7.136289 TGTGATTTCCGTATTTCAGTTTACC 57.864 36.000 0.00 0.00 0.00 2.85
2480 2945 6.711194 TGTGATTTCCGTATTTCAGTTTACCA 59.289 34.615 0.00 0.00 0.00 3.25
2481 2946 7.094975 TGTGATTTCCGTATTTCAGTTTACCAG 60.095 37.037 0.00 0.00 0.00 4.00
2482 2947 6.373216 TGATTTCCGTATTTCAGTTTACCAGG 59.627 38.462 0.00 0.00 0.00 4.45
2483 2948 4.895668 TCCGTATTTCAGTTTACCAGGT 57.104 40.909 0.00 0.00 0.00 4.00
2484 2949 5.999205 TCCGTATTTCAGTTTACCAGGTA 57.001 39.130 0.00 0.00 0.00 3.08
2485 2950 6.549433 TCCGTATTTCAGTTTACCAGGTAT 57.451 37.500 0.00 0.00 0.00 2.73
2486 2951 7.658525 TCCGTATTTCAGTTTACCAGGTATA 57.341 36.000 0.00 0.00 0.00 1.47
2487 2952 8.253867 TCCGTATTTCAGTTTACCAGGTATAT 57.746 34.615 0.00 0.00 0.00 0.86
2488 2953 8.362639 TCCGTATTTCAGTTTACCAGGTATATC 58.637 37.037 0.00 0.00 0.00 1.63
2489 2954 8.365647 CCGTATTTCAGTTTACCAGGTATATCT 58.634 37.037 0.00 0.00 0.00 1.98
2490 2955 9.760077 CGTATTTCAGTTTACCAGGTATATCTT 57.240 33.333 0.00 0.00 0.00 2.40
2495 2960 9.832445 TTCAGTTTACCAGGTATATCTTTCATC 57.168 33.333 0.00 0.00 0.00 2.92
2496 2961 8.429641 TCAGTTTACCAGGTATATCTTTCATCC 58.570 37.037 0.00 0.00 0.00 3.51
2497 2962 7.661847 CAGTTTACCAGGTATATCTTTCATCCC 59.338 40.741 0.00 0.00 0.00 3.85
2498 2963 7.572861 AGTTTACCAGGTATATCTTTCATCCCT 59.427 37.037 0.00 0.00 0.00 4.20
2499 2964 5.832539 ACCAGGTATATCTTTCATCCCTG 57.167 43.478 0.00 0.00 38.15 4.45
2500 2965 5.476983 ACCAGGTATATCTTTCATCCCTGA 58.523 41.667 0.00 0.00 40.29 3.86
2501 2966 5.911178 ACCAGGTATATCTTTCATCCCTGAA 59.089 40.000 0.00 0.00 40.29 3.02
2502 2967 6.183361 ACCAGGTATATCTTTCATCCCTGAAC 60.183 42.308 0.00 0.00 41.05 3.18
2503 2968 6.043706 CCAGGTATATCTTTCATCCCTGAACT 59.956 42.308 0.00 0.00 41.05 3.01
2504 2969 7.235606 CCAGGTATATCTTTCATCCCTGAACTA 59.764 40.741 0.00 0.00 41.05 2.24
2505 2970 8.651389 CAGGTATATCTTTCATCCCTGAACTAA 58.349 37.037 0.00 0.00 41.05 2.24
2506 2971 9.398921 AGGTATATCTTTCATCCCTGAACTAAT 57.601 33.333 0.00 0.00 41.05 1.73
2511 2976 8.839310 ATCTTTCATCCCTGAACTAATATTCG 57.161 34.615 0.00 0.00 41.05 3.34
2512 2977 7.217200 TCTTTCATCCCTGAACTAATATTCGG 58.783 38.462 0.00 0.00 41.05 4.30
2513 2978 6.494666 TTCATCCCTGAACTAATATTCGGT 57.505 37.500 0.00 0.00 36.46 4.69
2514 2979 5.853936 TCATCCCTGAACTAATATTCGGTG 58.146 41.667 0.00 0.00 33.74 4.94
2515 2980 5.365605 TCATCCCTGAACTAATATTCGGTGT 59.634 40.000 0.00 0.00 33.74 4.16
2516 2981 5.018539 TCCCTGAACTAATATTCGGTGTG 57.981 43.478 0.00 0.00 33.74 3.82
2517 2982 4.712829 TCCCTGAACTAATATTCGGTGTGA 59.287 41.667 0.00 0.00 33.74 3.58
2518 2983 5.365605 TCCCTGAACTAATATTCGGTGTGAT 59.634 40.000 0.00 0.00 33.74 3.06
2519 2984 6.055588 CCCTGAACTAATATTCGGTGTGATT 58.944 40.000 0.00 0.00 33.74 2.57
2520 2985 6.202954 CCCTGAACTAATATTCGGTGTGATTC 59.797 42.308 0.00 0.00 33.74 2.52
2521 2986 6.986817 CCTGAACTAATATTCGGTGTGATTCT 59.013 38.462 0.00 0.00 33.74 2.40
2522 2987 8.141909 CCTGAACTAATATTCGGTGTGATTCTA 58.858 37.037 0.00 0.00 33.74 2.10
2523 2988 9.698309 CTGAACTAATATTCGGTGTGATTCTAT 57.302 33.333 0.00 0.00 31.38 1.98
2532 2997 7.827819 TTCGGTGTGATTCTATTCTAAACTG 57.172 36.000 0.00 0.00 0.00 3.16
2533 2998 5.810587 TCGGTGTGATTCTATTCTAAACTGC 59.189 40.000 0.00 0.00 0.00 4.40
2534 2999 5.006746 CGGTGTGATTCTATTCTAAACTGCC 59.993 44.000 0.00 0.00 0.00 4.85
2535 3000 5.880332 GGTGTGATTCTATTCTAAACTGCCA 59.120 40.000 0.00 0.00 0.00 4.92
2536 3001 6.374333 GGTGTGATTCTATTCTAAACTGCCAA 59.626 38.462 0.00 0.00 0.00 4.52
2537 3002 7.067494 GGTGTGATTCTATTCTAAACTGCCAAT 59.933 37.037 0.00 0.00 0.00 3.16
2538 3003 7.912250 GTGTGATTCTATTCTAAACTGCCAATG 59.088 37.037 0.00 0.00 0.00 2.82
2539 3004 6.914757 GTGATTCTATTCTAAACTGCCAATGC 59.085 38.462 0.00 0.00 38.26 3.56
2540 3005 6.830324 TGATTCTATTCTAAACTGCCAATGCT 59.170 34.615 0.00 0.00 38.71 3.79
2541 3006 7.992608 TGATTCTATTCTAAACTGCCAATGCTA 59.007 33.333 0.00 0.00 38.71 3.49
2542 3007 7.792374 TTCTATTCTAAACTGCCAATGCTAG 57.208 36.000 0.00 0.00 38.71 3.42
2543 3008 6.291377 TCTATTCTAAACTGCCAATGCTAGG 58.709 40.000 0.00 0.00 38.71 3.02
2544 3009 4.301072 TTCTAAACTGCCAATGCTAGGT 57.699 40.909 0.00 0.00 38.71 3.08
2545 3010 5.429681 TTCTAAACTGCCAATGCTAGGTA 57.570 39.130 0.00 0.00 38.71 3.08
2546 3011 5.023533 TCTAAACTGCCAATGCTAGGTAG 57.976 43.478 6.29 6.29 43.54 3.18
2562 3027 7.644986 GCTAGGTAGCTTTGTATAATGTCAG 57.355 40.000 0.00 0.00 45.62 3.51
2563 3028 7.210873 GCTAGGTAGCTTTGTATAATGTCAGT 58.789 38.462 0.00 0.00 45.62 3.41
2564 3029 7.169982 GCTAGGTAGCTTTGTATAATGTCAGTG 59.830 40.741 0.00 0.00 45.62 3.66
2565 3030 6.947464 AGGTAGCTTTGTATAATGTCAGTGT 58.053 36.000 0.00 0.00 0.00 3.55
2566 3031 7.394816 AGGTAGCTTTGTATAATGTCAGTGTT 58.605 34.615 0.00 0.00 0.00 3.32
2567 3032 7.549488 AGGTAGCTTTGTATAATGTCAGTGTTC 59.451 37.037 0.00 0.00 0.00 3.18
2568 3033 6.743575 AGCTTTGTATAATGTCAGTGTTCC 57.256 37.500 0.00 0.00 0.00 3.62
2569 3034 6.476378 AGCTTTGTATAATGTCAGTGTTCCT 58.524 36.000 0.00 0.00 0.00 3.36
2570 3035 6.372659 AGCTTTGTATAATGTCAGTGTTCCTG 59.627 38.462 0.00 0.00 42.97 3.86
2571 3036 6.403636 GCTTTGTATAATGTCAGTGTTCCTGG 60.404 42.308 0.00 0.00 41.83 4.45
2572 3037 5.755409 TGTATAATGTCAGTGTTCCTGGT 57.245 39.130 0.00 0.00 41.83 4.00
2573 3038 5.730550 TGTATAATGTCAGTGTTCCTGGTC 58.269 41.667 0.00 0.00 41.83 4.02
2574 3039 4.908601 ATAATGTCAGTGTTCCTGGTCA 57.091 40.909 0.00 0.00 41.83 4.02
2575 3040 3.576078 AATGTCAGTGTTCCTGGTCAA 57.424 42.857 0.00 0.00 41.83 3.18
2576 3041 3.576078 ATGTCAGTGTTCCTGGTCAAA 57.424 42.857 0.00 0.00 41.83 2.69
2577 3042 2.639065 TGTCAGTGTTCCTGGTCAAAC 58.361 47.619 0.00 0.00 41.83 2.93
2578 3043 2.238646 TGTCAGTGTTCCTGGTCAAACT 59.761 45.455 0.00 0.00 41.83 2.66
2579 3044 2.872858 GTCAGTGTTCCTGGTCAAACTC 59.127 50.000 0.00 0.00 41.83 3.01
2580 3045 1.867233 CAGTGTTCCTGGTCAAACTCG 59.133 52.381 0.00 0.00 37.54 4.18
2581 3046 1.202651 AGTGTTCCTGGTCAAACTCGG 60.203 52.381 0.00 0.00 0.00 4.63
2582 3047 0.834612 TGTTCCTGGTCAAACTCGGT 59.165 50.000 0.00 0.00 0.00 4.69
2583 3048 1.210967 TGTTCCTGGTCAAACTCGGTT 59.789 47.619 0.00 0.00 0.00 4.44
2584 3049 2.294979 GTTCCTGGTCAAACTCGGTTT 58.705 47.619 0.00 0.00 36.05 3.27
2585 3050 2.686405 GTTCCTGGTCAAACTCGGTTTT 59.314 45.455 0.00 0.00 33.10 2.43
2586 3051 2.294074 TCCTGGTCAAACTCGGTTTTG 58.706 47.619 0.00 3.92 37.75 2.44
2587 3052 1.336755 CCTGGTCAAACTCGGTTTTGG 59.663 52.381 9.03 0.00 37.13 3.28
2588 3053 0.741915 TGGTCAAACTCGGTTTTGGC 59.258 50.000 9.03 7.51 39.85 4.52
2589 3054 3.562639 GTCAAACTCGGTTTTGGCC 57.437 52.632 0.00 0.00 35.44 5.36
2590 3055 1.029681 GTCAAACTCGGTTTTGGCCT 58.970 50.000 3.32 0.00 35.44 5.19
2591 3056 1.407618 GTCAAACTCGGTTTTGGCCTT 59.592 47.619 3.32 0.00 35.44 4.35
2592 3057 1.407258 TCAAACTCGGTTTTGGCCTTG 59.593 47.619 3.32 0.00 37.13 3.61
2593 3058 1.136110 CAAACTCGGTTTTGGCCTTGT 59.864 47.619 3.32 0.00 33.10 3.16
2594 3059 2.351706 AACTCGGTTTTGGCCTTGTA 57.648 45.000 3.32 0.00 0.00 2.41
2595 3060 2.579410 ACTCGGTTTTGGCCTTGTAT 57.421 45.000 3.32 0.00 0.00 2.29
2596 3061 2.159382 ACTCGGTTTTGGCCTTGTATG 58.841 47.619 3.32 0.00 0.00 2.39
2597 3062 1.472480 CTCGGTTTTGGCCTTGTATGG 59.528 52.381 3.32 0.00 0.00 2.74
2611 3076 6.130298 CCTTGTATGGCATTATTTTCGACA 57.870 37.500 4.78 0.00 0.00 4.35
2612 3077 6.559810 CCTTGTATGGCATTATTTTCGACAA 58.440 36.000 4.78 6.66 0.00 3.18
2613 3078 7.202526 CCTTGTATGGCATTATTTTCGACAAT 58.797 34.615 4.78 1.90 0.00 2.71
2614 3079 8.349245 CCTTGTATGGCATTATTTTCGACAATA 58.651 33.333 4.78 0.00 0.00 1.90
2615 3080 9.897744 CTTGTATGGCATTATTTTCGACAATAT 57.102 29.630 4.78 0.00 0.00 1.28
2616 3081 9.891828 TTGTATGGCATTATTTTCGACAATATC 57.108 29.630 4.78 0.00 0.00 1.63
2617 3082 9.061435 TGTATGGCATTATTTTCGACAATATCA 57.939 29.630 4.78 3.27 0.00 2.15
2620 3085 8.164058 TGGCATTATTTTCGACAATATCATCA 57.836 30.769 4.92 0.92 0.00 3.07
2621 3086 8.291740 TGGCATTATTTTCGACAATATCATCAG 58.708 33.333 4.92 0.00 0.00 2.90
2622 3087 8.292448 GGCATTATTTTCGACAATATCATCAGT 58.708 33.333 4.92 0.00 0.00 3.41
2623 3088 9.322776 GCATTATTTTCGACAATATCATCAGTC 57.677 33.333 4.92 0.00 0.00 3.51
2624 3089 9.817365 CATTATTTTCGACAATATCATCAGTCC 57.183 33.333 4.92 0.00 0.00 3.85
2625 3090 8.956533 TTATTTTCGACAATATCATCAGTCCA 57.043 30.769 4.92 0.00 0.00 4.02
2626 3091 7.864108 ATTTTCGACAATATCATCAGTCCAA 57.136 32.000 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 4.826616 TGAATACAGGGGTGATCCTATCA 58.173 43.478 0.00 0.00 34.92 2.15
15 16 6.590656 ATTTTGAATACAGGGGTGATCCTA 57.409 37.500 0.00 0.00 34.92 2.94
16 17 4.946160 TTTTGAATACAGGGGTGATCCT 57.054 40.909 0.00 0.00 37.71 3.24
26 27 9.340695 TGTTCGCAATCTTAATTTTGAATACAG 57.659 29.630 2.59 0.00 0.00 2.74
57 58 6.635030 ACATGATTGTGAAGGATGATGATG 57.365 37.500 0.00 0.00 33.85 3.07
84 85 7.558807 AGGTGATGACATGATGTTTGATAATGT 59.441 33.333 0.00 0.00 34.28 2.71
92 93 4.191544 CGGTAGGTGATGACATGATGTTT 58.808 43.478 0.00 0.00 0.00 2.83
95 96 2.138320 GCGGTAGGTGATGACATGATG 58.862 52.381 0.00 0.00 0.00 3.07
97 98 1.190643 TGCGGTAGGTGATGACATGA 58.809 50.000 0.00 0.00 0.00 3.07
114 115 2.054453 GGGGGCCTCAAGACATTGC 61.054 63.158 4.16 0.00 36.30 3.56
115 116 4.344237 GGGGGCCTCAAGACATTG 57.656 61.111 4.16 0.00 37.80 2.82
135 136 5.402270 GCAATTGTTCACGAACTTGCTAAAT 59.598 36.000 20.82 7.14 43.34 1.40
144 145 5.685511 ACATACTTTGCAATTGTTCACGAAC 59.314 36.000 7.40 2.89 41.50 3.95
146 147 5.238432 AGACATACTTTGCAATTGTTCACGA 59.762 36.000 7.40 0.00 0.00 4.35
148 149 5.565259 CGAGACATACTTTGCAATTGTTCAC 59.435 40.000 7.40 0.00 0.00 3.18
163 164 8.132362 AGATCATTTGAAGTACTCGAGACATAC 58.868 37.037 21.68 11.45 0.00 2.39
165 166 7.068103 AGAGATCATTTGAAGTACTCGAGACAT 59.932 37.037 21.68 5.95 0.00 3.06
169 170 7.219917 GTGAAGAGATCATTTGAAGTACTCGAG 59.780 40.741 11.84 11.84 40.97 4.04
171 172 6.808704 TGTGAAGAGATCATTTGAAGTACTCG 59.191 38.462 0.00 0.00 40.97 4.18
180 181 6.120905 AGGAAGGATGTGAAGAGATCATTTG 58.879 40.000 0.00 0.00 40.97 2.32
289 290 3.503363 GCACCACTTTCTTGATGATGTCA 59.497 43.478 0.00 0.00 34.25 3.58
307 308 1.595093 GGCTACAACATGGTGGCACC 61.595 60.000 29.75 29.75 45.88 5.01
325 327 3.025978 ACTACAACATCAATGGGCATGG 58.974 45.455 0.00 0.00 0.00 3.66
347 349 1.815408 GCCATACAACGATGGGATGCT 60.815 52.381 4.67 0.00 45.73 3.79
406 418 1.596496 CCCTGAAACCCTCCCACTAT 58.404 55.000 0.00 0.00 0.00 2.12
415 427 4.397832 TACGCCGCCCTGAAACCC 62.398 66.667 0.00 0.00 0.00 4.11
422 434 4.217159 GAATCCGTACGCCGCCCT 62.217 66.667 10.49 0.00 34.38 5.19
427 439 0.593263 AATCGTCGAATCCGTACGCC 60.593 55.000 10.49 0.00 38.34 5.68
433 446 1.909376 AGACACAATCGTCGAATCCG 58.091 50.000 0.00 0.00 40.98 4.18
438 451 1.006825 CGCCAAGACACAATCGTCGA 61.007 55.000 0.00 0.00 40.98 4.20
467 481 0.980423 GTCTTGCCAGACTTCCCTCT 59.020 55.000 10.60 0.00 45.54 3.69
539 562 2.093764 CCCTCTTCATCTGCTCTTCGTT 60.094 50.000 0.00 0.00 0.00 3.85
542 565 1.836802 ACCCCTCTTCATCTGCTCTTC 59.163 52.381 0.00 0.00 0.00 2.87
543 566 1.558756 CACCCCTCTTCATCTGCTCTT 59.441 52.381 0.00 0.00 0.00 2.85
552 575 1.541310 CCGCACTACACCCCTCTTCA 61.541 60.000 0.00 0.00 0.00 3.02
564 588 4.090588 CCTTTCCCGCCCGCACTA 62.091 66.667 0.00 0.00 0.00 2.74
588 613 6.684613 GCTCGGTCCCATGTAGAAAACTTATA 60.685 42.308 0.00 0.00 0.00 0.98
611 636 1.742761 CCATGTTGGATCGAACAGCT 58.257 50.000 24.60 9.66 40.96 4.24
612 637 0.099436 GCCATGTTGGATCGAACAGC 59.901 55.000 24.60 19.88 40.96 4.40
624 649 2.223711 GGTTTGAACTGTTCGCCATGTT 60.224 45.455 15.18 0.00 0.00 2.71
633 658 6.373759 AGGAAGAAATAGGGTTTGAACTGTT 58.626 36.000 0.00 0.00 0.00 3.16
657 685 2.442413 CCAGTCCCGCCTCAAATTAAA 58.558 47.619 0.00 0.00 0.00 1.52
659 687 0.254747 CCCAGTCCCGCCTCAAATTA 59.745 55.000 0.00 0.00 0.00 1.40
679 707 1.179814 AGTCCAGACTGTCCGGTGTC 61.180 60.000 9.76 9.05 40.75 3.67
681 709 1.405821 GATAGTCCAGACTGTCCGGTG 59.594 57.143 10.59 0.00 41.78 4.94
693 722 1.342374 TGAGCTGCTCTGGATAGTCCA 60.342 52.381 28.04 3.82 45.98 4.02
706 755 4.154918 CGAAAATATCCCCTAATGAGCTGC 59.845 45.833 0.00 0.00 0.00 5.25
707 756 4.697352 CCGAAAATATCCCCTAATGAGCTG 59.303 45.833 0.00 0.00 0.00 4.24
711 760 4.262721 CGGTCCGAAAATATCCCCTAATGA 60.263 45.833 4.91 0.00 0.00 2.57
718 767 0.887836 GGCCGGTCCGAAAATATCCC 60.888 60.000 14.39 0.00 0.00 3.85
719 768 0.179040 TGGCCGGTCCGAAAATATCC 60.179 55.000 14.39 2.70 37.80 2.59
727 776 2.737881 CCCTATTTGGCCGGTCCGA 61.738 63.158 14.39 1.48 37.80 4.55
736 785 1.391933 GCCCCTTTCGCCCTATTTGG 61.392 60.000 0.00 0.00 0.00 3.28
755 804 2.290464 AGGACATCTCTAACGGACTCG 58.710 52.381 0.00 0.00 43.02 4.18
846 1154 4.010349 GCCCTCTGCAACTGTTTTACTAT 58.990 43.478 0.00 0.00 40.77 2.12
847 1155 3.408634 GCCCTCTGCAACTGTTTTACTA 58.591 45.455 0.00 0.00 40.77 1.82
867 1185 0.804989 AAGCTACGCACAGGATTTGC 59.195 50.000 0.00 0.00 36.57 3.68
1061 1400 1.073923 CTTGGCAGTTTGGAGGGTAGT 59.926 52.381 0.00 0.00 0.00 2.73
1131 1502 3.123050 GGTTGTGGCAATCTGTTGTTTC 58.877 45.455 0.00 0.00 37.65 2.78
1178 1556 4.081365 GGTAGGAGTTGGAAGAAGAAGAGG 60.081 50.000 0.00 0.00 0.00 3.69
1193 1571 1.127567 TTGCTGGTGCTGGTAGGAGT 61.128 55.000 0.00 0.00 40.48 3.85
1271 1682 3.057019 GCCGAAAAACCAATCCAAGAAC 58.943 45.455 0.00 0.00 0.00 3.01
1294 1705 2.165301 CGACGGGCGAAACCATCTC 61.165 63.158 0.00 0.00 44.57 2.75
1726 2147 1.689273 CGGAGGGAGTATTGGAAGGAG 59.311 57.143 0.00 0.00 0.00 3.69
1731 2152 3.716431 AGTTTACGGAGGGAGTATTGGA 58.284 45.455 0.00 0.00 0.00 3.53
1797 2218 9.632638 ACGTACTCCCTCTGTAAACTAATATAA 57.367 33.333 0.00 0.00 0.00 0.98
1799 2220 9.061435 GTACGTACTCCCTCTGTAAACTAATAT 57.939 37.037 18.47 0.00 0.00 1.28
1800 2221 8.267894 AGTACGTACTCCCTCTGTAAACTAATA 58.732 37.037 22.45 0.00 0.00 0.98
1801 2222 7.115414 AGTACGTACTCCCTCTGTAAACTAAT 58.885 38.462 22.45 0.00 0.00 1.73
1802 2223 6.476378 AGTACGTACTCCCTCTGTAAACTAA 58.524 40.000 22.45 0.00 0.00 2.24
1803 2224 6.054860 AGTACGTACTCCCTCTGTAAACTA 57.945 41.667 22.45 0.00 0.00 2.24
1804 2225 4.916183 AGTACGTACTCCCTCTGTAAACT 58.084 43.478 22.45 0.00 0.00 2.66
1805 2226 5.877564 ACTAGTACGTACTCCCTCTGTAAAC 59.122 44.000 30.53 0.00 37.73 2.01
1806 2227 6.054860 ACTAGTACGTACTCCCTCTGTAAA 57.945 41.667 30.53 9.22 37.73 2.01
1807 2228 5.683876 ACTAGTACGTACTCCCTCTGTAA 57.316 43.478 30.53 9.94 37.73 2.41
1808 2229 5.683876 AACTAGTACGTACTCCCTCTGTA 57.316 43.478 30.53 10.66 37.73 2.74
1809 2230 4.566426 AACTAGTACGTACTCCCTCTGT 57.434 45.455 30.53 16.94 37.73 3.41
1810 2231 6.112058 ACTTAACTAGTACGTACTCCCTCTG 58.888 44.000 30.53 19.14 37.73 3.35
1811 2232 6.306643 ACTTAACTAGTACGTACTCCCTCT 57.693 41.667 30.53 14.47 37.73 3.69
1812 2233 6.201997 GCTACTTAACTAGTACGTACTCCCTC 59.798 46.154 30.53 0.54 38.33 4.30
1813 2234 6.052360 GCTACTTAACTAGTACGTACTCCCT 58.948 44.000 30.53 17.72 38.33 4.20
1814 2235 6.052360 AGCTACTTAACTAGTACGTACTCCC 58.948 44.000 30.53 1.76 38.33 4.30
1815 2236 8.707839 CATAGCTACTTAACTAGTACGTACTCC 58.292 40.741 30.53 2.17 38.33 3.85
1816 2237 8.707839 CCATAGCTACTTAACTAGTACGTACTC 58.292 40.741 30.53 12.80 38.33 2.59
1817 2238 7.172361 GCCATAGCTACTTAACTAGTACGTACT 59.828 40.741 29.62 29.62 38.33 2.73
1818 2239 7.041780 TGCCATAGCTACTTAACTAGTACGTAC 60.042 40.741 18.10 18.10 40.80 3.67
1819 2240 6.992123 TGCCATAGCTACTTAACTAGTACGTA 59.008 38.462 0.00 0.00 40.80 3.57
1820 2241 5.824624 TGCCATAGCTACTTAACTAGTACGT 59.175 40.000 0.00 0.00 40.80 3.57
1821 2242 6.309712 TGCCATAGCTACTTAACTAGTACG 57.690 41.667 0.00 0.00 40.80 3.67
1822 2243 7.714703 ACTTGCCATAGCTACTTAACTAGTAC 58.285 38.462 0.00 0.00 40.80 2.73
1836 2257 2.284190 GTCTCAAGGACTTGCCATAGC 58.716 52.381 7.18 0.00 41.46 2.97
1837 2258 2.739932 CGGTCTCAAGGACTTGCCATAG 60.740 54.545 7.18 0.38 43.97 2.23
1838 2259 1.207089 CGGTCTCAAGGACTTGCCATA 59.793 52.381 7.18 0.00 43.97 2.74
1839 2260 0.036010 CGGTCTCAAGGACTTGCCAT 60.036 55.000 7.18 0.00 43.97 4.40
1841 2262 0.606604 TACGGTCTCAAGGACTTGCC 59.393 55.000 7.18 2.71 43.97 4.52
1842 2263 1.544691 TCTACGGTCTCAAGGACTTGC 59.455 52.381 7.18 0.00 43.97 4.01
1843 2264 2.820787 AGTCTACGGTCTCAAGGACTTG 59.179 50.000 5.72 5.72 43.97 3.16
1844 2265 3.157750 AGTCTACGGTCTCAAGGACTT 57.842 47.619 0.00 0.00 43.97 3.01
1846 2267 2.094649 CCAAGTCTACGGTCTCAAGGAC 60.095 54.545 0.00 0.00 43.79 3.85
1867 2317 7.949903 TGCATGATTTTGCCATTATTACATC 57.050 32.000 0.00 0.00 42.06 3.06
1868 2318 8.151596 TGATGCATGATTTTGCCATTATTACAT 58.848 29.630 2.46 0.00 42.06 2.29
1869 2319 7.498443 TGATGCATGATTTTGCCATTATTACA 58.502 30.769 2.46 0.00 42.06 2.41
1877 2327 3.997681 CTGTTTGATGCATGATTTTGCCA 59.002 39.130 2.46 0.00 42.06 4.92
1879 2329 5.600908 AACTGTTTGATGCATGATTTTGC 57.399 34.783 2.46 0.00 43.07 3.68
1885 2335 3.304592 CCACGAAACTGTTTGATGCATGA 60.305 43.478 11.03 0.00 0.00 3.07
1888 2338 2.020720 ACCACGAAACTGTTTGATGCA 58.979 42.857 11.03 0.00 0.00 3.96
1924 2374 9.772973 AAATACCCCAAAAGTTCTGTAAAATTC 57.227 29.630 0.00 0.00 0.00 2.17
1928 2378 7.899648 TCAAATACCCCAAAAGTTCTGTAAA 57.100 32.000 0.00 0.00 0.00 2.01
1931 2381 6.014584 GGATTCAAATACCCCAAAAGTTCTGT 60.015 38.462 0.00 0.00 0.00 3.41
1937 2387 7.954666 TCTAAGGATTCAAATACCCCAAAAG 57.045 36.000 0.00 0.00 0.00 2.27
2042 2504 1.343465 GAAGAGGTTCGAGTGGTTGGA 59.657 52.381 0.00 0.00 0.00 3.53
2046 2508 2.599408 TAGGAAGAGGTTCGAGTGGT 57.401 50.000 0.00 0.00 32.92 4.16
2053 2515 7.163001 AGCAATGAAATTTAGGAAGAGGTTC 57.837 36.000 0.00 0.00 31.22 3.62
2063 2525 7.765360 TGGCATAGGAAAAGCAATGAAATTTAG 59.235 33.333 0.00 0.00 31.22 1.85
2068 2530 5.187381 TGATGGCATAGGAAAAGCAATGAAA 59.813 36.000 0.00 0.00 0.00 2.69
2088 2551 2.103771 AGGAGTGTTCGATGGGATGATG 59.896 50.000 0.00 0.00 0.00 3.07
2093 2556 1.639722 TGAAGGAGTGTTCGATGGGA 58.360 50.000 0.00 0.00 0.00 4.37
2094 2557 2.555199 GATGAAGGAGTGTTCGATGGG 58.445 52.381 0.00 0.00 0.00 4.00
2096 2559 3.533606 AGGATGAAGGAGTGTTCGATG 57.466 47.619 0.00 0.00 0.00 3.84
2100 2564 6.881602 ACAAGAATTAGGATGAAGGAGTGTTC 59.118 38.462 0.00 0.00 0.00 3.18
2118 2582 4.470304 GGACTACCCAAGGAGTACAAGAAT 59.530 45.833 0.00 0.00 34.14 2.40
2127 2591 5.248705 AGAACTAAAAGGACTACCCAAGGAG 59.751 44.000 0.00 0.00 37.41 3.69
2129 2593 5.221864 ACAGAACTAAAAGGACTACCCAAGG 60.222 44.000 0.00 0.00 37.41 3.61
2133 2597 5.718607 TCCTACAGAACTAAAAGGACTACCC 59.281 44.000 0.00 0.00 36.73 3.69
2134 2598 6.847421 TCCTACAGAACTAAAAGGACTACC 57.153 41.667 0.00 0.00 31.41 3.18
2135 2599 8.751242 AGAATCCTACAGAACTAAAAGGACTAC 58.249 37.037 0.00 0.00 39.10 2.73
2136 2600 8.896722 AGAATCCTACAGAACTAAAAGGACTA 57.103 34.615 0.00 0.00 39.10 2.59
2137 2601 7.800300 AGAATCCTACAGAACTAAAAGGACT 57.200 36.000 0.00 0.00 39.10 3.85
2138 2602 8.929827 GTAGAATCCTACAGAACTAAAAGGAC 57.070 38.462 0.00 0.00 43.63 3.85
2161 2625 1.578897 TTAGAGTGGCATGCCCTGTA 58.421 50.000 33.44 25.97 34.56 2.74
2163 2627 1.142465 AGATTAGAGTGGCATGCCCTG 59.858 52.381 33.44 0.00 34.56 4.45
2195 2659 7.941238 ACATGATTCTTAGAACCCATGAATAGG 59.059 37.037 29.01 13.59 36.29 2.57
2233 2698 3.588569 ACTCTCCTGAACAGTTAAGGGT 58.411 45.455 16.03 4.30 0.00 4.34
2243 2708 7.259290 TGTCACAAAATAAACTCTCCTGAAC 57.741 36.000 0.00 0.00 0.00 3.18
2245 2710 7.873719 TTTGTCACAAAATAAACTCTCCTGA 57.126 32.000 0.00 0.00 0.00 3.86
2262 2727 9.788960 GTTCTTTATCCCTTGATTATTTGTCAC 57.211 33.333 0.00 0.00 32.18 3.67
2316 2781 3.085533 TGCAAGTTGTAACACAAGTGGT 58.914 40.909 4.48 0.00 40.60 4.16
2317 2782 3.773860 TGCAAGTTGTAACACAAGTGG 57.226 42.857 4.48 0.00 40.60 4.00
2318 2783 6.645700 AAAATGCAAGTTGTAACACAAGTG 57.354 33.333 4.48 0.00 40.60 3.16
2339 2804 6.809196 GGCGTGTACATGATTTGGATTAAAAA 59.191 34.615 19.38 0.00 0.00 1.94
2346 2811 2.481289 TGGCGTGTACATGATTTGGA 57.519 45.000 19.38 0.00 0.00 3.53
2386 2851 9.647797 CAATGTCCAAACTATTGTAGTACTGTA 57.352 33.333 5.39 0.00 38.26 2.74
2387 2852 8.154856 ACAATGTCCAAACTATTGTAGTACTGT 58.845 33.333 5.39 0.00 41.69 3.55
2388 2853 8.443160 CACAATGTCCAAACTATTGTAGTACTG 58.557 37.037 5.39 0.00 41.60 2.74
2389 2854 7.606456 CCACAATGTCCAAACTATTGTAGTACT 59.394 37.037 0.00 0.00 41.60 2.73
2390 2855 7.604927 TCCACAATGTCCAAACTATTGTAGTAC 59.395 37.037 0.00 0.00 41.60 2.73
2391 2856 7.681679 TCCACAATGTCCAAACTATTGTAGTA 58.318 34.615 0.00 0.00 41.60 1.82
2392 2857 6.539173 TCCACAATGTCCAAACTATTGTAGT 58.461 36.000 0.00 0.00 41.60 2.73
2393 2858 7.336679 TCATCCACAATGTCCAAACTATTGTAG 59.663 37.037 0.00 0.00 41.60 2.74
2394 2859 7.171653 TCATCCACAATGTCCAAACTATTGTA 58.828 34.615 0.00 0.00 41.60 2.41
2395 2860 6.009589 TCATCCACAATGTCCAAACTATTGT 58.990 36.000 0.00 0.00 43.61 2.71
2396 2861 6.513806 TCATCCACAATGTCCAAACTATTG 57.486 37.500 0.00 0.00 36.68 1.90
2397 2862 7.722949 AATCATCCACAATGTCCAAACTATT 57.277 32.000 0.00 0.00 36.68 1.73
2408 2873 8.538409 TCGTAGATCAATAATCATCCACAATG 57.462 34.615 0.00 0.00 36.79 2.82
2410 2875 7.118245 GCATCGTAGATCAATAATCATCCACAA 59.882 37.037 0.00 0.00 45.12 3.33
2427 2892 7.264947 TGTCTCAATAGAAAATGCATCGTAGA 58.735 34.615 0.00 0.00 34.93 2.59
2429 2894 7.841915 TTGTCTCAATAGAAAATGCATCGTA 57.158 32.000 0.00 0.00 32.16 3.43
2449 2914 7.305474 ACTGAAATACGGAAATCACATTTGTC 58.695 34.615 0.00 0.00 31.47 3.18
2450 2915 7.214467 ACTGAAATACGGAAATCACATTTGT 57.786 32.000 0.00 0.00 31.47 2.83
2451 2916 8.519492 AAACTGAAATACGGAAATCACATTTG 57.481 30.769 0.00 0.00 31.47 2.32
2452 2917 9.620660 GTAAACTGAAATACGGAAATCACATTT 57.379 29.630 0.00 0.00 34.64 2.32
2453 2918 8.241367 GGTAAACTGAAATACGGAAATCACATT 58.759 33.333 0.00 0.00 0.00 2.71
2454 2919 7.392113 TGGTAAACTGAAATACGGAAATCACAT 59.608 33.333 0.00 0.00 0.00 3.21
2455 2920 6.711194 TGGTAAACTGAAATACGGAAATCACA 59.289 34.615 0.00 0.00 0.00 3.58
2456 2921 7.136289 TGGTAAACTGAAATACGGAAATCAC 57.864 36.000 0.00 0.00 0.00 3.06
2457 2922 6.373216 CCTGGTAAACTGAAATACGGAAATCA 59.627 38.462 0.00 0.00 0.00 2.57
2458 2923 6.373495 ACCTGGTAAACTGAAATACGGAAATC 59.627 38.462 0.00 0.00 0.00 2.17
2459 2924 6.243148 ACCTGGTAAACTGAAATACGGAAAT 58.757 36.000 0.00 0.00 0.00 2.17
2460 2925 5.623169 ACCTGGTAAACTGAAATACGGAAA 58.377 37.500 0.00 0.00 0.00 3.13
2461 2926 5.231702 ACCTGGTAAACTGAAATACGGAA 57.768 39.130 0.00 0.00 0.00 4.30
2462 2927 4.895668 ACCTGGTAAACTGAAATACGGA 57.104 40.909 0.00 0.00 0.00 4.69
2463 2928 8.365647 AGATATACCTGGTAAACTGAAATACGG 58.634 37.037 11.17 0.00 0.00 4.02
2464 2929 9.760077 AAGATATACCTGGTAAACTGAAATACG 57.240 33.333 11.17 0.00 0.00 3.06
2469 2934 9.832445 GATGAAAGATATACCTGGTAAACTGAA 57.168 33.333 11.17 1.79 0.00 3.02
2470 2935 8.429641 GGATGAAAGATATACCTGGTAAACTGA 58.570 37.037 11.17 0.00 0.00 3.41
2471 2936 7.661847 GGGATGAAAGATATACCTGGTAAACTG 59.338 40.741 11.17 0.00 0.00 3.16
2472 2937 7.572861 AGGGATGAAAGATATACCTGGTAAACT 59.427 37.037 11.17 7.68 37.48 2.66
2473 2938 7.746703 AGGGATGAAAGATATACCTGGTAAAC 58.253 38.462 11.17 5.53 37.48 2.01
2474 2939 7.947782 AGGGATGAAAGATATACCTGGTAAA 57.052 36.000 11.17 0.00 37.48 2.01
2480 2945 8.798975 TTAGTTCAGGGATGAAAGATATACCT 57.201 34.615 0.00 0.00 39.53 3.08
2485 2950 9.929180 CGAATATTAGTTCAGGGATGAAAGATA 57.071 33.333 0.00 0.00 0.00 1.98
2486 2951 7.880195 CCGAATATTAGTTCAGGGATGAAAGAT 59.120 37.037 0.00 0.00 0.00 2.40
2487 2952 7.147549 ACCGAATATTAGTTCAGGGATGAAAGA 60.148 37.037 0.00 0.00 0.00 2.52
2488 2953 6.992715 ACCGAATATTAGTTCAGGGATGAAAG 59.007 38.462 0.00 0.00 0.00 2.62
2489 2954 6.765989 CACCGAATATTAGTTCAGGGATGAAA 59.234 38.462 0.00 0.00 0.00 2.69
2490 2955 6.126883 ACACCGAATATTAGTTCAGGGATGAA 60.127 38.462 0.00 0.00 0.00 2.57
2491 2956 5.365605 ACACCGAATATTAGTTCAGGGATGA 59.634 40.000 0.00 0.00 0.00 2.92
2492 2957 5.466728 CACACCGAATATTAGTTCAGGGATG 59.533 44.000 0.00 0.00 0.00 3.51
2493 2958 5.365605 TCACACCGAATATTAGTTCAGGGAT 59.634 40.000 0.00 0.00 0.00 3.85
2494 2959 4.712829 TCACACCGAATATTAGTTCAGGGA 59.287 41.667 0.00 0.00 0.00 4.20
2495 2960 5.018539 TCACACCGAATATTAGTTCAGGG 57.981 43.478 0.00 0.00 0.00 4.45
2496 2961 6.986817 AGAATCACACCGAATATTAGTTCAGG 59.013 38.462 0.00 0.00 0.00 3.86
2497 2962 9.698309 ATAGAATCACACCGAATATTAGTTCAG 57.302 33.333 0.00 0.00 0.00 3.02
2506 2971 9.529325 CAGTTTAGAATAGAATCACACCGAATA 57.471 33.333 0.00 0.00 0.00 1.75
2507 2972 7.011482 GCAGTTTAGAATAGAATCACACCGAAT 59.989 37.037 0.00 0.00 0.00 3.34
2508 2973 6.312918 GCAGTTTAGAATAGAATCACACCGAA 59.687 38.462 0.00 0.00 0.00 4.30
2509 2974 5.810587 GCAGTTTAGAATAGAATCACACCGA 59.189 40.000 0.00 0.00 0.00 4.69
2510 2975 5.006746 GGCAGTTTAGAATAGAATCACACCG 59.993 44.000 0.00 0.00 0.00 4.94
2511 2976 5.880332 TGGCAGTTTAGAATAGAATCACACC 59.120 40.000 0.00 0.00 0.00 4.16
2512 2977 6.985188 TGGCAGTTTAGAATAGAATCACAC 57.015 37.500 0.00 0.00 0.00 3.82
2513 2978 7.415541 GCATTGGCAGTTTAGAATAGAATCACA 60.416 37.037 0.00 0.00 40.72 3.58
2514 2979 6.914757 GCATTGGCAGTTTAGAATAGAATCAC 59.085 38.462 0.00 0.00 40.72 3.06
2515 2980 6.830324 AGCATTGGCAGTTTAGAATAGAATCA 59.170 34.615 0.00 0.00 44.61 2.57
2516 2981 7.269477 AGCATTGGCAGTTTAGAATAGAATC 57.731 36.000 0.00 0.00 44.61 2.52
2517 2982 7.446625 CCTAGCATTGGCAGTTTAGAATAGAAT 59.553 37.037 0.00 0.00 44.61 2.40
2518 2983 6.767902 CCTAGCATTGGCAGTTTAGAATAGAA 59.232 38.462 0.00 0.00 44.61 2.10
2519 2984 6.126768 ACCTAGCATTGGCAGTTTAGAATAGA 60.127 38.462 0.00 0.00 44.61 1.98
2520 2985 6.058183 ACCTAGCATTGGCAGTTTAGAATAG 58.942 40.000 0.00 0.00 44.61 1.73
2521 2986 6.001449 ACCTAGCATTGGCAGTTTAGAATA 57.999 37.500 0.00 0.00 44.61 1.75
2522 2987 4.860022 ACCTAGCATTGGCAGTTTAGAAT 58.140 39.130 0.00 0.00 44.61 2.40
2523 2988 4.301072 ACCTAGCATTGGCAGTTTAGAA 57.699 40.909 0.00 0.00 44.61 2.10
2524 2989 5.023533 CTACCTAGCATTGGCAGTTTAGA 57.976 43.478 0.00 0.00 44.61 2.10
2539 3004 8.198109 ACACTGACATTATACAAAGCTACCTAG 58.802 37.037 0.00 0.00 0.00 3.02
2540 3005 8.074613 ACACTGACATTATACAAAGCTACCTA 57.925 34.615 0.00 0.00 0.00 3.08
2541 3006 6.947464 ACACTGACATTATACAAAGCTACCT 58.053 36.000 0.00 0.00 0.00 3.08
2542 3007 7.201617 GGAACACTGACATTATACAAAGCTACC 60.202 40.741 0.00 0.00 0.00 3.18
2543 3008 7.549488 AGGAACACTGACATTATACAAAGCTAC 59.451 37.037 0.00 0.00 0.00 3.58
2544 3009 7.620880 AGGAACACTGACATTATACAAAGCTA 58.379 34.615 0.00 0.00 0.00 3.32
2545 3010 6.476378 AGGAACACTGACATTATACAAAGCT 58.524 36.000 0.00 0.00 0.00 3.74
2546 3011 6.743575 AGGAACACTGACATTATACAAAGC 57.256 37.500 0.00 0.00 0.00 3.51
2561 3026 1.202651 CCGAGTTTGACCAGGAACACT 60.203 52.381 0.00 0.00 0.00 3.55
2562 3027 1.226746 CCGAGTTTGACCAGGAACAC 58.773 55.000 0.00 0.00 0.00 3.32
2563 3028 0.834612 ACCGAGTTTGACCAGGAACA 59.165 50.000 0.00 0.00 0.00 3.18
2564 3029 1.963172 AACCGAGTTTGACCAGGAAC 58.037 50.000 0.00 0.00 0.00 3.62
2565 3030 2.685897 CAAAACCGAGTTTGACCAGGAA 59.314 45.455 0.00 0.00 40.29 3.36
2566 3031 2.294074 CAAAACCGAGTTTGACCAGGA 58.706 47.619 0.00 0.00 40.29 3.86
2567 3032 1.336755 CCAAAACCGAGTTTGACCAGG 59.663 52.381 11.09 0.00 40.29 4.45
2568 3033 1.269051 GCCAAAACCGAGTTTGACCAG 60.269 52.381 11.09 0.00 40.29 4.00
2569 3034 0.741915 GCCAAAACCGAGTTTGACCA 59.258 50.000 11.09 0.00 40.29 4.02
2570 3035 0.031585 GGCCAAAACCGAGTTTGACC 59.968 55.000 0.00 6.41 40.29 4.02
2571 3036 1.029681 AGGCCAAAACCGAGTTTGAC 58.970 50.000 5.01 1.53 40.29 3.18
2572 3037 1.407258 CAAGGCCAAAACCGAGTTTGA 59.593 47.619 5.01 0.00 40.29 2.69
2573 3038 1.136110 ACAAGGCCAAAACCGAGTTTG 59.864 47.619 5.01 0.00 35.80 2.93
2574 3039 1.480789 ACAAGGCCAAAACCGAGTTT 58.519 45.000 5.01 0.00 37.34 2.66
2575 3040 2.351706 TACAAGGCCAAAACCGAGTT 57.648 45.000 5.01 0.00 33.69 3.01
2576 3041 2.159382 CATACAAGGCCAAAACCGAGT 58.841 47.619 5.01 0.00 33.69 4.18
2577 3042 1.472480 CCATACAAGGCCAAAACCGAG 59.528 52.381 5.01 0.00 33.69 4.63
2578 3043 1.540267 CCATACAAGGCCAAAACCGA 58.460 50.000 5.01 0.00 33.69 4.69
2588 3053 6.130298 TGTCGAAAATAATGCCATACAAGG 57.870 37.500 0.00 0.00 0.00 3.61
2589 3054 9.897744 ATATTGTCGAAAATAATGCCATACAAG 57.102 29.630 11.99 0.00 0.00 3.16
2590 3055 9.891828 GATATTGTCGAAAATAATGCCATACAA 57.108 29.630 11.99 0.00 0.00 2.41
2591 3056 9.061435 TGATATTGTCGAAAATAATGCCATACA 57.939 29.630 11.99 1.53 0.00 2.29
2594 3059 8.795513 TGATGATATTGTCGAAAATAATGCCAT 58.204 29.630 11.99 12.00 0.00 4.40
2595 3060 8.164058 TGATGATATTGTCGAAAATAATGCCA 57.836 30.769 11.99 8.35 0.00 4.92
2596 3061 8.292448 ACTGATGATATTGTCGAAAATAATGCC 58.708 33.333 11.99 3.83 0.00 4.40
2597 3062 9.322776 GACTGATGATATTGTCGAAAATAATGC 57.677 33.333 11.99 5.86 0.00 3.56
2598 3063 9.817365 GGACTGATGATATTGTCGAAAATAATG 57.183 33.333 11.99 2.69 0.00 1.90
2599 3064 9.559732 TGGACTGATGATATTGTCGAAAATAAT 57.440 29.630 11.99 2.46 0.00 1.28
2600 3065 8.956533 TGGACTGATGATATTGTCGAAAATAA 57.043 30.769 11.99 0.00 0.00 1.40
2601 3066 8.956533 TTGGACTGATGATATTGTCGAAAATA 57.043 30.769 10.44 10.44 0.00 1.40
2602 3067 7.864108 TTGGACTGATGATATTGTCGAAAAT 57.136 32.000 6.02 6.02 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.