Multiple sequence alignment - TraesCS6A01G327500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G327500 chr6A 100.000 3507 0 0 2447 5953 560573631 560570125 0.000000e+00 6477.0
1 TraesCS6A01G327500 chr6A 100.000 2203 0 0 1 2203 560576077 560573875 0.000000e+00 4069.0
2 TraesCS6A01G327500 chr6A 94.584 794 37 1 4181 4974 560101619 560102406 0.000000e+00 1223.0
3 TraesCS6A01G327500 chr6A 95.380 303 12 2 1 302 185245721 185245420 1.160000e-131 481.0
4 TraesCS6A01G327500 chr6A 92.810 306 15 3 1 302 36254961 36254659 2.550000e-118 436.0
5 TraesCS6A01G327500 chr6A 90.759 303 23 4 1 302 511029377 511029079 3.340000e-107 399.0
6 TraesCS6A01G327500 chr6A 86.726 113 11 3 5341 5449 511529502 511529390 8.100000e-24 122.0
7 TraesCS6A01G327500 chr6A 85.088 114 9 5 5341 5446 7373483 7373596 6.310000e-20 110.0
8 TraesCS6A01G327500 chr6A 92.157 51 3 1 5330 5379 262546310 262546360 2.980000e-08 71.3
9 TraesCS6A01G327500 chr6D 96.811 2822 74 9 2514 5331 417897564 417894755 0.000000e+00 4698.0
10 TraesCS6A01G327500 chr6D 92.206 1899 88 32 294 2168 417899752 417897890 0.000000e+00 2632.0
11 TraesCS6A01G327500 chr6D 95.870 1138 41 3 4207 5344 417691143 417692274 0.000000e+00 1836.0
12 TraesCS6A01G327500 chr6D 88.317 505 44 10 5449 5953 417692279 417692768 5.140000e-165 592.0
13 TraesCS6A01G327500 chr6D 87.243 486 35 11 5463 5936 417894763 417894293 4.090000e-146 529.0
14 TraesCS6A01G327500 chr6D 88.514 148 12 2 4714 4861 417777857 417777715 2.210000e-39 174.0
15 TraesCS6A01G327500 chr6D 90.179 112 7 2 5236 5344 417777652 417777542 6.220000e-30 143.0
16 TraesCS6A01G327500 chr6B 90.699 1645 91 41 294 1904 626893156 626891540 0.000000e+00 2134.0
17 TraesCS6A01G327500 chr6B 95.697 674 28 1 4681 5353 626887385 626886712 0.000000e+00 1083.0
18 TraesCS6A01G327500 chr6B 92.387 683 45 2 3189 3867 626608465 626609144 0.000000e+00 966.0
19 TraesCS6A01G327500 chr6B 90.872 734 47 14 3189 3918 626891133 626890416 0.000000e+00 966.0
20 TraesCS6A01G327500 chr6B 91.045 603 44 5 4015 4614 626888069 626887474 0.000000e+00 806.0
21 TraesCS6A01G327500 chr6B 88.819 635 41 10 2479 3107 626607856 626608466 0.000000e+00 752.0
22 TraesCS6A01G327500 chr6B 89.362 517 44 6 5442 5953 626455142 626455652 1.810000e-179 640.0
23 TraesCS6A01G327500 chr6B 89.484 523 30 10 5435 5953 626886665 626886164 6.510000e-179 638.0
24 TraesCS6A01G327500 chr6B 87.423 326 29 7 2573 2892 626891535 626891216 1.220000e-96 364.0
25 TraesCS6A01G327500 chr6B 92.544 228 11 1 5726 5953 626587718 626587939 7.440000e-84 322.0
26 TraesCS6A01G327500 chr6B 92.000 50 4 0 4612 4661 626887419 626887370 2.980000e-08 71.3
27 TraesCS6A01G327500 chr4B 93.415 410 24 3 2700 3107 608066393 608066801 6.600000e-169 604.0
28 TraesCS6A01G327500 chr4B 92.683 410 27 3 2700 3107 9935675 9935267 6.650000e-164 588.0
29 TraesCS6A01G327500 chr4B 96.142 337 13 0 3189 3525 9935268 9934932 8.720000e-153 551.0
30 TraesCS6A01G327500 chr4B 94.955 337 17 0 3189 3525 608066800 608067136 4.090000e-146 529.0
31 TraesCS6A01G327500 chr4B 91.860 86 7 0 2092 2177 32267283 32267198 2.910000e-23 121.0
32 TraesCS6A01G327500 chr5A 93.770 305 12 3 1 302 660802590 660802290 9.100000e-123 451.0
33 TraesCS6A01G327500 chr5A 100.000 29 0 0 2092 2120 680469485 680469513 3.000000e-03 54.7
34 TraesCS6A01G327500 chr4A 93.115 305 15 4 1 302 541887678 541887377 5.480000e-120 442.0
35 TraesCS6A01G327500 chr2A 91.722 302 20 2 1 302 648525439 648525143 1.190000e-111 414.0
36 TraesCS6A01G327500 chr2A 91.118 304 23 3 1 302 773004874 773005175 5.550000e-110 409.0
37 TraesCS6A01G327500 chr2A 90.323 93 8 1 2111 2203 715218905 715218814 2.910000e-23 121.0
38 TraesCS6A01G327500 chr2A 92.593 54 4 0 3106 3159 25288422 25288475 1.780000e-10 78.7
39 TraesCS6A01G327500 chr2A 92.593 54 3 1 3106 3159 25239256 25239308 6.400000e-10 76.8
40 TraesCS6A01G327500 chr2A 90.741 54 5 0 3106 3159 25136659 25136712 8.280000e-09 73.1
41 TraesCS6A01G327500 chr2A 90.741 54 5 0 3106 3159 25209193 25209246 8.280000e-09 73.1
42 TraesCS6A01G327500 chr2A 90.741 54 5 0 3106 3159 25257456 25257509 8.280000e-09 73.1
43 TraesCS6A01G327500 chr2A 90.741 54 5 0 3106 3159 25323917 25323970 8.280000e-09 73.1
44 TraesCS6A01G327500 chr7A 91.722 302 18 2 1 302 429046540 429046834 4.290000e-111 412.0
45 TraesCS6A01G327500 chr7A 88.043 92 9 2 2092 2181 478042637 478042546 2.270000e-19 108.0
46 TraesCS6A01G327500 chr7B 90.789 304 22 6 1 302 387635471 387635172 9.290000e-108 401.0
47 TraesCS6A01G327500 chr7B 92.683 41 2 1 3105 3145 665386461 665386500 2.320000e-04 58.4
48 TraesCS6A01G327500 chr3B 89.623 106 8 2 5341 5443 636441534 636441639 1.350000e-26 132.0
49 TraesCS6A01G327500 chr3B 90.426 94 7 2 2093 2185 425722683 425722591 8.100000e-24 122.0
50 TraesCS6A01G327500 chr3B 94.805 77 2 2 2111 2185 691695028 691694952 1.050000e-22 119.0
51 TraesCS6A01G327500 chr2D 88.889 108 10 1 5341 5446 79387322 79387429 1.350000e-26 132.0
52 TraesCS6A01G327500 chr1D 96.000 75 3 0 2111 2185 352563678 352563752 8.100000e-24 122.0
53 TraesCS6A01G327500 chr1D 90.000 90 9 0 2114 2203 486002506 486002595 3.770000e-22 117.0
54 TraesCS6A01G327500 chr1D 86.957 92 12 0 3104 3195 77013455 77013364 2.930000e-18 104.0
55 TraesCS6A01G327500 chr5B 93.750 80 5 0 2111 2190 21519682 21519761 2.910000e-23 121.0
56 TraesCS6A01G327500 chr5B 92.157 51 3 1 5330 5379 487026407 487026457 2.980000e-08 71.3
57 TraesCS6A01G327500 chr3D 86.486 111 9 3 5342 5446 609741023 609740913 3.770000e-22 117.0
58 TraesCS6A01G327500 chr3D 83.929 112 10 4 5342 5445 463187564 463187453 3.800000e-17 100.0
59 TraesCS6A01G327500 chr1B 89.247 93 10 0 2111 2203 428620524 428620432 3.770000e-22 117.0
60 TraesCS6A01G327500 chr1B 88.506 87 10 0 2114 2200 676719937 676720023 8.160000e-19 106.0
61 TraesCS6A01G327500 chr5D 95.455 66 3 0 5382 5447 438690513 438690578 8.160000e-19 106.0
62 TraesCS6A01G327500 chr5D 83.036 112 12 6 5341 5446 361674314 361674424 1.770000e-15 95.3
63 TraesCS6A01G327500 chr7D 86.022 93 9 4 5382 5471 38011366 38011275 4.910000e-16 97.1
64 TraesCS6A01G327500 chr7D 100.000 29 0 0 2092 2120 45696228 45696200 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G327500 chr6A 560570125 560576077 5952 True 5273.000000 6477 100.000000 1 5953 2 chr6A.!!$R5 5952
1 TraesCS6A01G327500 chr6A 560101619 560102406 787 False 1223.000000 1223 94.584000 4181 4974 1 chr6A.!!$F3 793
2 TraesCS6A01G327500 chr6D 417894293 417899752 5459 True 2619.666667 4698 92.086667 294 5936 3 chr6D.!!$R2 5642
3 TraesCS6A01G327500 chr6D 417691143 417692768 1625 False 1214.000000 1836 92.093500 4207 5953 2 chr6D.!!$F1 1746
4 TraesCS6A01G327500 chr6B 626886164 626893156 6992 True 866.042857 2134 91.031429 294 5953 7 chr6B.!!$R1 5659
5 TraesCS6A01G327500 chr6B 626607856 626609144 1288 False 859.000000 966 90.603000 2479 3867 2 chr6B.!!$F3 1388
6 TraesCS6A01G327500 chr6B 626455142 626455652 510 False 640.000000 640 89.362000 5442 5953 1 chr6B.!!$F1 511
7 TraesCS6A01G327500 chr4B 9934932 9935675 743 True 569.500000 588 94.412500 2700 3525 2 chr4B.!!$R2 825
8 TraesCS6A01G327500 chr4B 608066393 608067136 743 False 566.500000 604 94.185000 2700 3525 2 chr4B.!!$F1 825

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
241 242 0.102663 TTTCTGTACGCCACGTGTGA 59.897 50.000 15.65 0.0 41.39 3.58 F
1824 1913 0.037326 GGCATATCGGAAGCGGATCA 60.037 55.000 0.00 0.0 0.00 2.92 F
2017 2106 0.038618 TGCGCTACACTTGTCGTGAT 60.039 50.000 9.73 0.0 46.81 3.06 F
2031 2120 0.179148 CGTGATGTACGCAGCCACTA 60.179 55.000 0.00 0.0 46.92 2.74 F
2130 2219 1.414158 TGAGGGGGCGAAGAAGATAG 58.586 55.000 0.00 0.0 0.00 2.08 F
3881 3992 1.831106 TGCCTGGTCTATTGTGATCGT 59.169 47.619 0.00 0.0 0.00 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2017 2106 1.080093 GTGCTAGTGGCTGCGTACA 60.080 57.895 0.00 0.00 42.39 2.90 R
3742 3851 1.089920 AAGGCGCAATAGCTCAACTG 58.910 50.000 10.83 0.00 39.10 3.16 R
3937 4048 0.609957 ACGTGGACCATGGACTCGTA 60.610 55.000 26.95 6.66 0.00 3.43 R
3990 4101 2.959030 TCCCTCCACAGACTATGATTCG 59.041 50.000 0.00 0.00 0.00 3.34 R
4218 6630 4.294416 TCACAAAACGTACACAATTGGG 57.706 40.909 6.04 6.04 0.00 4.12 R
5637 8108 0.036306 TCTTTTGGAACGGAGGGAGC 59.964 55.000 0.00 0.00 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.998493 CTCCAGGGAGCTTGGTACT 58.002 57.895 1.73 0.00 37.02 2.73
25 26 1.280457 CTCCAGGGAGCTTGGTACTT 58.720 55.000 1.73 0.00 37.02 2.24
26 27 1.630878 CTCCAGGGAGCTTGGTACTTT 59.369 52.381 1.73 0.00 37.02 2.66
27 28 2.040412 CTCCAGGGAGCTTGGTACTTTT 59.960 50.000 1.73 0.00 37.02 2.27
28 29 2.162681 CCAGGGAGCTTGGTACTTTTG 58.837 52.381 0.00 0.00 0.00 2.44
29 30 2.224769 CCAGGGAGCTTGGTACTTTTGA 60.225 50.000 0.00 0.00 0.00 2.69
30 31 3.486383 CAGGGAGCTTGGTACTTTTGAA 58.514 45.455 0.00 0.00 0.00 2.69
31 32 3.888930 CAGGGAGCTTGGTACTTTTGAAA 59.111 43.478 0.00 0.00 0.00 2.69
32 33 4.340950 CAGGGAGCTTGGTACTTTTGAAAA 59.659 41.667 0.00 0.00 0.00 2.29
33 34 4.959839 AGGGAGCTTGGTACTTTTGAAAAA 59.040 37.500 0.00 0.00 0.00 1.94
109 110 7.855545 AGAAACTTATTAGATTACTGCATGCG 58.144 34.615 14.09 10.50 0.00 4.73
110 111 5.597813 ACTTATTAGATTACTGCATGCGC 57.402 39.130 14.09 0.00 39.24 6.09
111 112 4.150627 ACTTATTAGATTACTGCATGCGCG 59.849 41.667 14.09 0.00 42.97 6.86
112 113 1.934589 TTAGATTACTGCATGCGCGT 58.065 45.000 14.09 14.89 42.97 6.01
113 114 1.208259 TAGATTACTGCATGCGCGTG 58.792 50.000 25.25 25.25 42.97 5.34
114 115 0.740868 AGATTACTGCATGCGCGTGT 60.741 50.000 29.00 13.50 42.97 4.49
115 116 0.587242 GATTACTGCATGCGCGTGTG 60.587 55.000 29.00 23.08 42.97 3.82
116 117 1.018752 ATTACTGCATGCGCGTGTGA 61.019 50.000 29.00 15.96 42.97 3.58
117 118 1.224722 TTACTGCATGCGCGTGTGAA 61.225 50.000 29.00 15.52 42.97 3.18
118 119 1.224722 TACTGCATGCGCGTGTGAAA 61.225 50.000 29.00 12.74 42.97 2.69
119 120 1.370293 CTGCATGCGCGTGTGAAAA 60.370 52.632 29.00 10.45 42.97 2.29
120 121 0.933973 CTGCATGCGCGTGTGAAAAA 60.934 50.000 29.00 8.83 42.97 1.94
152 153 9.606631 TTGAAATTTTTGTATTTTGTAGGCTGT 57.393 25.926 0.00 0.00 0.00 4.40
176 177 2.831685 AAAAGACAAAATTCCGGCCC 57.168 45.000 0.00 0.00 0.00 5.80
177 178 1.710816 AAAGACAAAATTCCGGCCCA 58.289 45.000 0.00 0.00 0.00 5.36
178 179 1.710816 AAGACAAAATTCCGGCCCAA 58.289 45.000 0.00 0.00 0.00 4.12
179 180 0.966179 AGACAAAATTCCGGCCCAAC 59.034 50.000 0.00 0.00 0.00 3.77
180 181 0.676736 GACAAAATTCCGGCCCAACA 59.323 50.000 0.00 0.00 0.00 3.33
181 182 1.069358 GACAAAATTCCGGCCCAACAA 59.931 47.619 0.00 0.00 0.00 2.83
182 183 1.202592 ACAAAATTCCGGCCCAACAAC 60.203 47.619 0.00 0.00 0.00 3.32
183 184 1.123928 AAAATTCCGGCCCAACAACA 58.876 45.000 0.00 0.00 0.00 3.33
184 185 1.123928 AAATTCCGGCCCAACAACAA 58.876 45.000 0.00 0.00 0.00 2.83
185 186 1.123928 AATTCCGGCCCAACAACAAA 58.876 45.000 0.00 0.00 0.00 2.83
186 187 1.123928 ATTCCGGCCCAACAACAAAA 58.876 45.000 0.00 0.00 0.00 2.44
187 188 0.902531 TTCCGGCCCAACAACAAAAA 59.097 45.000 0.00 0.00 0.00 1.94
206 207 4.344359 AAAAAGCGGCCCATTTTAGAAA 57.656 36.364 11.79 0.00 0.00 2.52
207 208 4.551702 AAAAGCGGCCCATTTTAGAAAT 57.448 36.364 10.13 0.00 0.00 2.17
208 209 5.669164 AAAAGCGGCCCATTTTAGAAATA 57.331 34.783 10.13 0.00 0.00 1.40
209 210 5.869649 AAAGCGGCCCATTTTAGAAATAT 57.130 34.783 0.00 0.00 0.00 1.28
210 211 4.853924 AGCGGCCCATTTTAGAAATATG 57.146 40.909 0.00 0.00 0.00 1.78
211 212 4.215109 AGCGGCCCATTTTAGAAATATGT 58.785 39.130 0.00 0.00 0.00 2.29
212 213 4.649218 AGCGGCCCATTTTAGAAATATGTT 59.351 37.500 0.00 0.00 0.00 2.71
213 214 5.128663 AGCGGCCCATTTTAGAAATATGTTT 59.871 36.000 0.00 0.00 0.00 2.83
214 215 5.815222 GCGGCCCATTTTAGAAATATGTTTT 59.185 36.000 0.00 0.00 0.00 2.43
215 216 6.315144 GCGGCCCATTTTAGAAATATGTTTTT 59.685 34.615 0.00 0.00 0.00 1.94
216 217 7.676104 GCGGCCCATTTTAGAAATATGTTTTTG 60.676 37.037 0.00 0.00 0.00 2.44
217 218 7.333174 CGGCCCATTTTAGAAATATGTTTTTGT 59.667 33.333 0.00 0.00 0.00 2.83
218 219 8.664798 GGCCCATTTTAGAAATATGTTTTTGTC 58.335 33.333 0.00 0.00 0.00 3.18
219 220 9.435688 GCCCATTTTAGAAATATGTTTTTGTCT 57.564 29.630 0.00 0.00 0.00 3.41
239 240 1.654317 TTTTTCTGTACGCCACGTGT 58.346 45.000 15.65 0.00 41.39 4.49
240 241 0.931702 TTTTCTGTACGCCACGTGTG 59.068 50.000 15.65 9.17 41.39 3.82
241 242 0.102663 TTTCTGTACGCCACGTGTGA 59.897 50.000 15.65 0.00 41.39 3.58
242 243 0.102663 TTCTGTACGCCACGTGTGAA 59.897 50.000 15.65 4.46 41.39 3.18
243 244 0.102663 TCTGTACGCCACGTGTGAAA 59.897 50.000 15.65 0.00 41.39 2.69
244 245 0.506932 CTGTACGCCACGTGTGAAAG 59.493 55.000 15.65 0.00 41.39 2.62
245 246 0.179105 TGTACGCCACGTGTGAAAGT 60.179 50.000 15.65 9.02 41.39 2.66
246 247 1.066757 TGTACGCCACGTGTGAAAGTA 59.933 47.619 15.65 8.07 41.39 2.24
247 248 2.288334 TGTACGCCACGTGTGAAAGTAT 60.288 45.455 15.65 0.00 41.39 2.12
248 249 2.728690 ACGCCACGTGTGAAAGTATA 57.271 45.000 15.65 0.00 39.18 1.47
249 250 3.241067 ACGCCACGTGTGAAAGTATAT 57.759 42.857 15.65 0.00 39.18 0.86
250 251 2.927477 ACGCCACGTGTGAAAGTATATG 59.073 45.455 15.65 0.00 39.18 1.78
251 252 2.284150 CGCCACGTGTGAAAGTATATGG 59.716 50.000 15.65 0.00 0.00 2.74
252 253 3.267483 GCCACGTGTGAAAGTATATGGT 58.733 45.455 15.65 0.00 0.00 3.55
253 254 3.687698 GCCACGTGTGAAAGTATATGGTT 59.312 43.478 15.65 0.00 0.00 3.67
254 255 4.871557 GCCACGTGTGAAAGTATATGGTTA 59.128 41.667 15.65 0.00 0.00 2.85
255 256 5.526111 GCCACGTGTGAAAGTATATGGTTAT 59.474 40.000 15.65 0.00 0.00 1.89
256 257 6.511121 GCCACGTGTGAAAGTATATGGTTATG 60.511 42.308 15.65 0.00 0.00 1.90
257 258 6.759356 CCACGTGTGAAAGTATATGGTTATGA 59.241 38.462 15.65 0.00 0.00 2.15
258 259 7.279090 CCACGTGTGAAAGTATATGGTTATGAA 59.721 37.037 15.65 0.00 0.00 2.57
259 260 8.826710 CACGTGTGAAAGTATATGGTTATGAAT 58.173 33.333 7.58 0.00 0.00 2.57
260 261 9.391006 ACGTGTGAAAGTATATGGTTATGAATT 57.609 29.630 0.00 0.00 0.00 2.17
272 273 7.754069 ATGGTTATGAATTTTTGCACATACG 57.246 32.000 0.00 0.00 0.00 3.06
273 274 5.574830 TGGTTATGAATTTTTGCACATACGC 59.425 36.000 0.00 0.00 0.00 4.42
274 275 5.574830 GGTTATGAATTTTTGCACATACGCA 59.425 36.000 0.00 0.00 41.03 5.24
285 286 5.341407 TGCACATACGCAATACACATATG 57.659 39.130 0.00 0.00 39.45 1.78
286 287 4.813697 TGCACATACGCAATACACATATGT 59.186 37.500 1.41 1.41 39.45 2.29
287 288 6.728913 TTGCACATACGCAATACACATATGTG 60.729 38.462 29.97 29.97 46.61 3.21
304 305 3.535280 TGTGAGAGTGTACACAAAGCA 57.465 42.857 27.06 15.88 42.72 3.91
348 373 4.996434 GGCTGGGATCGGCGGATG 62.996 72.222 12.00 0.00 45.93 3.51
350 375 4.240103 CTGGGATCGGCGGATGCA 62.240 66.667 23.64 11.37 42.30 3.96
351 376 4.240103 TGGGATCGGCGGATGCAG 62.240 66.667 23.64 0.00 42.30 4.41
353 378 4.916293 GGATCGGCGGATGCAGCA 62.916 66.667 18.82 0.00 45.35 4.41
354 379 3.643978 GATCGGCGGATGCAGCAC 61.644 66.667 12.00 0.00 45.35 4.40
372 397 2.734723 CACCAGGCGACACGACAG 60.735 66.667 0.00 0.00 37.34 3.51
410 451 2.877582 GTGGCACGTACGTAGGCG 60.878 66.667 22.34 9.95 44.93 5.52
412 453 2.409055 TGGCACGTACGTAGGCGAT 61.409 57.895 22.34 0.00 42.00 4.58
505 546 3.070159 CCATCCATCGTCCTTGACATACT 59.930 47.826 0.00 0.00 32.09 2.12
544 585 2.496899 AACATCCATCTTTGACCGCT 57.503 45.000 0.00 0.00 0.00 5.52
560 601 4.401519 TGACCGCTATTACTATATGCTCCC 59.598 45.833 0.00 0.00 0.00 4.30
561 602 4.611367 ACCGCTATTACTATATGCTCCCT 58.389 43.478 0.00 0.00 0.00 4.20
562 603 4.402793 ACCGCTATTACTATATGCTCCCTG 59.597 45.833 0.00 0.00 0.00 4.45
563 604 4.645136 CCGCTATTACTATATGCTCCCTGA 59.355 45.833 0.00 0.00 0.00 3.86
564 605 5.450688 CCGCTATTACTATATGCTCCCTGAC 60.451 48.000 0.00 0.00 0.00 3.51
565 606 5.583495 GCTATTACTATATGCTCCCTGACG 58.417 45.833 0.00 0.00 0.00 4.35
566 607 5.357314 GCTATTACTATATGCTCCCTGACGA 59.643 44.000 0.00 0.00 0.00 4.20
567 608 5.646577 ATTACTATATGCTCCCTGACGAC 57.353 43.478 0.00 0.00 0.00 4.34
568 609 3.231207 ACTATATGCTCCCTGACGACT 57.769 47.619 0.00 0.00 0.00 4.18
569 610 2.887783 ACTATATGCTCCCTGACGACTG 59.112 50.000 0.00 0.00 0.00 3.51
570 611 1.781786 ATATGCTCCCTGACGACTGT 58.218 50.000 0.00 0.00 0.00 3.55
571 612 1.557099 TATGCTCCCTGACGACTGTT 58.443 50.000 0.00 0.00 0.00 3.16
572 613 0.247736 ATGCTCCCTGACGACTGTTC 59.752 55.000 0.00 0.00 0.00 3.18
573 614 1.079750 GCTCCCTGACGACTGTTCC 60.080 63.158 0.00 0.00 0.00 3.62
574 615 1.592223 CTCCCTGACGACTGTTCCC 59.408 63.158 0.00 0.00 0.00 3.97
646 698 2.395690 GTCCATTCTTGCGTCGCG 59.604 61.111 13.38 0.00 0.00 5.87
648 700 3.118454 CCATTCTTGCGTCGCGGT 61.118 61.111 13.38 0.00 0.00 5.68
685 741 4.101077 CCTGCTCCTCCCCTCCCT 62.101 72.222 0.00 0.00 0.00 4.20
686 742 2.445654 CTGCTCCTCCCCTCCCTC 60.446 72.222 0.00 0.00 0.00 4.30
689 745 4.548513 CTCCTCCCCTCCCTCCCG 62.549 77.778 0.00 0.00 0.00 5.14
833 891 1.807573 GCGGCGAACAGAGGAGAAG 60.808 63.158 12.98 0.00 0.00 2.85
952 1012 4.179599 CTCCCCTCCCCTCCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
1443 1532 2.356667 GGGGAGGAAGCTGGGTTG 59.643 66.667 0.00 0.00 0.00 3.77
1489 1578 6.294731 GGAGACCATACAAGTTTCAGCAAAAT 60.295 38.462 0.00 0.00 0.00 1.82
1509 1598 1.202758 TCATATCAACGACCATGGGCC 60.203 52.381 18.09 6.51 0.00 5.80
1548 1637 2.357637 GGTCGAATCAGAGAGAGTGGAG 59.642 54.545 0.00 0.00 29.72 3.86
1634 1723 4.141528 TGACAAATTGGCCAAAGTGGAAAT 60.142 37.500 24.71 7.25 40.96 2.17
1689 1778 2.361737 GCCACAAGGGAGAAGGCC 60.362 66.667 0.00 0.00 39.42 5.19
1737 1826 4.201891 GCAGAGTCCAATTCATGTGACATC 60.202 45.833 0.00 0.00 33.92 3.06
1791 1880 5.104259 GGTTTAGGAGAACCATCACATCT 57.896 43.478 2.08 0.00 46.66 2.90
1824 1913 0.037326 GGCATATCGGAAGCGGATCA 60.037 55.000 0.00 0.00 0.00 2.92
1883 1972 5.744666 TTACACCTGCTTACTTTGTGAAC 57.255 39.130 0.00 0.00 0.00 3.18
1930 2019 8.588290 AGTTAATGTCTATGGGTTTGCAATTA 57.412 30.769 0.00 0.00 0.00 1.40
1934 2023 5.080337 TGTCTATGGGTTTGCAATTACCAA 58.920 37.500 19.48 10.77 36.10 3.67
1935 2024 5.719085 TGTCTATGGGTTTGCAATTACCAAT 59.281 36.000 19.48 16.50 36.10 3.16
1936 2025 6.212388 TGTCTATGGGTTTGCAATTACCAATT 59.788 34.615 19.48 8.62 36.10 2.32
1967 2056 9.719279 CAAATTTGATGCAACATTTTGTTAAGT 57.281 25.926 13.08 0.00 38.77 2.24
1993 2082 8.049117 TCTAGCAGAAGATGTTTCATAATTGGT 58.951 33.333 0.00 0.00 0.00 3.67
2017 2106 0.038618 TGCGCTACACTTGTCGTGAT 60.039 50.000 9.73 0.00 46.81 3.06
2021 2110 2.592897 CGCTACACTTGTCGTGATGTAC 59.407 50.000 0.00 0.00 46.81 2.90
2031 2120 0.179148 CGTGATGTACGCAGCCACTA 60.179 55.000 0.00 0.00 46.92 2.74
2130 2219 1.414158 TGAGGGGGCGAAGAAGATAG 58.586 55.000 0.00 0.00 0.00 2.08
2170 2259 9.745018 TCTGAGAAATCTTTGATATTCAAACCT 57.255 29.630 0.00 0.00 41.02 3.50
2197 2286 6.964876 AATTAGGGGTAGTTTTCCTACAGT 57.035 37.500 2.31 0.00 46.68 3.55
2198 2287 9.733907 ATAATTAGGGGTAGTTTTCCTACAGTA 57.266 33.333 2.31 0.00 46.68 2.74
2199 2288 7.672122 ATTAGGGGTAGTTTTCCTACAGTAG 57.328 40.000 0.00 0.00 46.68 2.57
2200 2289 4.359996 AGGGGTAGTTTTCCTACAGTAGG 58.640 47.826 19.67 19.67 46.68 3.18
2201 2290 3.453717 GGGGTAGTTTTCCTACAGTAGGG 59.546 52.174 24.27 8.04 46.68 3.53
2202 2291 3.453717 GGGTAGTTTTCCTACAGTAGGGG 59.546 52.174 24.27 3.21 46.68 4.79
2464 2558 2.367529 TCCGCCACTGTGAACCATA 58.632 52.632 9.86 0.00 0.00 2.74
2484 2578 7.310634 ACCATAACTCTATTATACCACCTGGA 58.689 38.462 0.00 0.00 38.94 3.86
2485 2579 7.962003 ACCATAACTCTATTATACCACCTGGAT 59.038 37.037 0.00 0.00 38.94 3.41
2491 2585 9.531158 ACTCTATTATACCACCTGGATAGTTAC 57.469 37.037 0.00 0.00 38.94 2.50
2501 2595 7.038729 ACCACCTGGATAGTTACATATCATCTG 60.039 40.741 0.00 0.00 38.94 2.90
2510 2604 7.700322 AGTTACATATCATCTGCGTTACTTG 57.300 36.000 0.00 0.00 0.00 3.16
2517 2611 4.237724 TCATCTGCGTTACTTGTTGAGAG 58.762 43.478 0.00 0.00 0.00 3.20
2588 2683 4.101942 TCGTGTTCTGCAACAAAATGTTC 58.898 39.130 0.00 0.00 44.32 3.18
2598 2693 4.677779 GCAACAAAATGTTCCACTGACTGT 60.678 41.667 0.00 0.00 38.77 3.55
2720 2818 4.016444 AGCATGTAAGTTGTGGGTTATGG 58.984 43.478 0.00 0.00 0.00 2.74
2728 2826 2.757868 GTTGTGGGTTATGGCATGCTAA 59.242 45.455 18.92 6.47 0.00 3.09
2758 2860 6.761099 TGTTTCACTTACACTGCCTTAAAA 57.239 33.333 0.00 0.00 0.00 1.52
2759 2861 6.557110 TGTTTCACTTACACTGCCTTAAAAC 58.443 36.000 0.00 0.00 0.00 2.43
2760 2862 6.151312 TGTTTCACTTACACTGCCTTAAAACA 59.849 34.615 0.00 0.00 32.34 2.83
2762 2864 6.952773 TCACTTACACTGCCTTAAAACATT 57.047 33.333 0.00 0.00 0.00 2.71
2763 2865 8.453238 TTCACTTACACTGCCTTAAAACATTA 57.547 30.769 0.00 0.00 0.00 1.90
2764 2866 8.630054 TCACTTACACTGCCTTAAAACATTAT 57.370 30.769 0.00 0.00 0.00 1.28
2765 2867 8.511321 TCACTTACACTGCCTTAAAACATTATG 58.489 33.333 0.00 0.00 0.00 1.90
3049 3153 7.069702 TGAGAATGGCATAATTTGGATTTAGCA 59.930 33.333 0.00 0.00 0.00 3.49
3155 3259 9.209175 GATATTTTTAGAGTCTGTGACAGTGTT 57.791 33.333 12.93 0.00 34.60 3.32
3429 3533 3.832490 TGCACAGGTGAGTACTAGAATGT 59.168 43.478 3.10 0.00 0.00 2.71
3611 3719 7.545965 ACTTACTCTATCAAACACATGCTGTAC 59.454 37.037 0.00 0.00 30.51 2.90
3625 3733 8.206867 ACACATGCTGTACTATCAGTTTATCAT 58.793 33.333 0.00 0.00 37.70 2.45
3742 3851 2.298610 GCCCCTGAGGTTAGTTTATGC 58.701 52.381 0.00 0.00 38.26 3.14
3756 3865 5.240713 AGTTTATGCAGTTGAGCTATTGC 57.759 39.130 0.00 0.00 40.05 3.56
3796 3905 7.090953 TGTTGGTCGTACTTTTTCTTGAAAT 57.909 32.000 0.00 0.00 0.00 2.17
3881 3992 1.831106 TGCCTGGTCTATTGTGATCGT 59.169 47.619 0.00 0.00 0.00 3.73
3882 3993 2.236146 TGCCTGGTCTATTGTGATCGTT 59.764 45.455 0.00 0.00 0.00 3.85
3937 4048 4.849813 TGTGACCTCAATGATCCAGAAT 57.150 40.909 0.00 0.00 0.00 2.40
3954 4065 2.431057 AGAATACGAGTCCATGGTCCAC 59.569 50.000 12.58 2.35 0.00 4.02
4179 6590 7.948034 TTTCCGTGAAAGGTTATTGGATTAT 57.052 32.000 0.00 0.00 0.00 1.28
4712 7182 4.141158 ACCCATTCCCTGTATTTGGATCTC 60.141 45.833 0.00 0.00 0.00 2.75
4755 7225 6.924060 AGAGTTGTGTATTGTTACTGTCTGTC 59.076 38.462 0.00 0.00 0.00 3.51
4955 7425 3.073062 AGAGACCACTGCAACATTAAGGT 59.927 43.478 0.00 0.00 0.00 3.50
4965 7435 3.491356 CAACATTAAGGTGTGCGATGTG 58.509 45.455 0.00 0.00 31.81 3.21
5190 7660 4.339530 CGAGGAGTGAAGATGATCCTACAA 59.660 45.833 0.00 0.00 42.27 2.41
5234 7704 2.492088 GCTCCCGCTTTAATTGTTTCCT 59.508 45.455 0.00 0.00 0.00 3.36
5245 7715 7.543520 GCTTTAATTGTTTCCTGGAGATTTCAG 59.456 37.037 0.00 0.00 0.00 3.02
5274 7744 4.898265 AGATAGCTAGCTTCCAACATGAGA 59.102 41.667 24.88 0.00 0.00 3.27
5284 7754 4.574674 TCCAACATGAGAAGCACCTATT 57.425 40.909 0.00 0.00 0.00 1.73
5292 7762 2.289002 GAGAAGCACCTATTGGCATTCG 59.711 50.000 0.00 0.00 36.63 3.34
5308 7778 3.334691 CATTCGGTTGAAAGGTAGCTCA 58.665 45.455 0.00 0.00 37.71 4.26
5313 7783 2.226674 GGTTGAAAGGTAGCTCAGCAAC 59.773 50.000 18.48 18.48 34.88 4.17
5355 7826 4.701286 AGGTACTCCATCCGTCCC 57.299 61.111 0.00 0.00 35.89 4.46
5356 7827 1.701603 AGGTACTCCATCCGTCCCA 59.298 57.895 0.00 0.00 35.89 4.37
5357 7828 0.264955 AGGTACTCCATCCGTCCCAT 59.735 55.000 0.00 0.00 35.89 4.00
5359 7830 2.090943 AGGTACTCCATCCGTCCCATAA 60.091 50.000 0.00 0.00 35.89 1.90
5362 7833 4.715297 GGTACTCCATCCGTCCCATAATAT 59.285 45.833 0.00 0.00 0.00 1.28
5363 7834 5.895534 GGTACTCCATCCGTCCCATAATATA 59.104 44.000 0.00 0.00 0.00 0.86
5364 7835 6.381994 GGTACTCCATCCGTCCCATAATATAA 59.618 42.308 0.00 0.00 0.00 0.98
5365 7836 6.546428 ACTCCATCCGTCCCATAATATAAG 57.454 41.667 0.00 0.00 0.00 1.73
5366 7837 6.261435 ACTCCATCCGTCCCATAATATAAGA 58.739 40.000 0.00 0.00 0.00 2.10
5367 7838 6.729100 ACTCCATCCGTCCCATAATATAAGAA 59.271 38.462 0.00 0.00 0.00 2.52
5370 7841 7.182026 TCCATCCGTCCCATAATATAAGAACAT 59.818 37.037 0.00 0.00 0.00 2.71
5371 7842 7.829211 CCATCCGTCCCATAATATAAGAACATT 59.171 37.037 0.00 0.00 0.00 2.71
5372 7843 9.231297 CATCCGTCCCATAATATAAGAACATTT 57.769 33.333 0.00 0.00 0.00 2.32
5373 7844 9.807921 ATCCGTCCCATAATATAAGAACATTTT 57.192 29.630 0.00 0.00 0.00 1.82
5374 7845 9.635404 TCCGTCCCATAATATAAGAACATTTTT 57.365 29.630 0.00 0.00 0.00 1.94
5434 7905 8.918202 ATCAAAAACGCTCTTATATTATGGGA 57.082 30.769 0.00 0.00 0.00 4.37
5435 7906 8.149973 TCAAAAACGCTCTTATATTATGGGAC 57.850 34.615 0.00 0.00 0.00 4.46
5436 7907 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
5437 7908 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
5438 7909 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
5439 7910 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
5440 7911 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
5441 7912 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
5442 7913 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
5443 7914 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
5444 7915 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
5445 7916 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
5446 7917 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
5447 7918 0.186873 TATGGGACGGAGGGAGTACC 59.813 60.000 0.00 0.00 42.94 3.34
5459 7930 0.391793 GGAGTACCTTGCTGGCTGAC 60.392 60.000 0.00 0.00 40.22 3.51
5498 7969 0.752376 GCCCGTAGCCTAGTCTCAGT 60.752 60.000 0.00 0.00 34.35 3.41
5566 8037 0.878961 AGTTCACTTTCCGACCGTGC 60.879 55.000 0.00 0.00 0.00 5.34
5573 8044 1.659098 CTTTCCGACCGTGCTTACATC 59.341 52.381 0.00 0.00 0.00 3.06
5574 8045 0.604073 TTCCGACCGTGCTTACATCA 59.396 50.000 0.00 0.00 0.00 3.07
5575 8046 0.108992 TCCGACCGTGCTTACATCAC 60.109 55.000 0.00 0.00 0.00 3.06
5637 8108 4.450757 TCGTATTGTCCATGTTGTTGACTG 59.549 41.667 0.00 0.00 0.00 3.51
5655 8126 0.250727 TGCTCCCTCCGTTCCAAAAG 60.251 55.000 0.00 0.00 0.00 2.27
5660 8131 1.880027 CCCTCCGTTCCAAAAGAAGTG 59.120 52.381 0.00 0.00 34.29 3.16
5661 8132 1.266989 CCTCCGTTCCAAAAGAAGTGC 59.733 52.381 0.00 0.00 34.29 4.40
5662 8133 1.266989 CTCCGTTCCAAAAGAAGTGCC 59.733 52.381 0.00 0.00 34.29 5.01
5663 8134 1.028905 CCGTTCCAAAAGAAGTGCCA 58.971 50.000 0.00 0.00 34.29 4.92
5664 8135 1.407258 CCGTTCCAAAAGAAGTGCCAA 59.593 47.619 0.00 0.00 34.29 4.52
5665 8136 2.159170 CCGTTCCAAAAGAAGTGCCAAA 60.159 45.455 0.00 0.00 34.29 3.28
5668 8139 2.461695 TCCAAAAGAAGTGCCAAACCA 58.538 42.857 0.00 0.00 0.00 3.67
5670 8141 2.192624 CAAAAGAAGTGCCAAACCACG 58.807 47.619 0.00 0.00 40.59 4.94
5671 8142 0.744281 AAAGAAGTGCCAAACCACGG 59.256 50.000 0.00 0.00 40.59 4.94
5678 8165 2.959707 AGTGCCAAACCACGGAAATTTA 59.040 40.909 0.00 0.00 40.59 1.40
5694 8181 5.117440 GGAAATTTAAACTAAAACCACGGCG 59.883 40.000 4.80 4.80 0.00 6.46
5720 8212 3.192633 GGCACTTATTTTGGAACGGATGT 59.807 43.478 0.00 0.00 0.00 3.06
5770 8262 4.838986 ACCTGTACAGTTCAGTTCCTATGT 59.161 41.667 21.18 4.61 0.00 2.29
5824 8316 7.010923 GTCCAGAATTTCAGTGTCTATGTCATC 59.989 40.741 0.00 0.00 0.00 2.92
5825 8317 6.820152 CCAGAATTTCAGTGTCTATGTCATCA 59.180 38.462 0.00 0.00 0.00 3.07
5826 8318 7.498239 CCAGAATTTCAGTGTCTATGTCATCAT 59.502 37.037 0.00 0.00 38.00 2.45
5847 8339 1.167781 TATGCCACCAGATGCGCATG 61.168 55.000 30.76 16.58 42.04 4.06
5881 8373 6.484643 TGCATGTAGATTTGCTTAGAAGATCC 59.515 38.462 0.00 0.00 39.60 3.36
5896 8388 1.827969 AGATCCGCAGTGCTACTTCTT 59.172 47.619 14.33 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.280457 AAGTACCAAGCTCCCTGGAG 58.720 55.000 9.96 8.91 44.56 3.86
7 8 1.742308 AAAGTACCAAGCTCCCTGGA 58.258 50.000 9.96 0.00 0.00 3.86
8 9 2.162681 CAAAAGTACCAAGCTCCCTGG 58.837 52.381 1.15 1.15 0.00 4.45
9 10 3.140325 TCAAAAGTACCAAGCTCCCTG 57.860 47.619 0.00 0.00 0.00 4.45
10 11 3.876309 TTCAAAAGTACCAAGCTCCCT 57.124 42.857 0.00 0.00 0.00 4.20
11 12 4.929819 TTTTCAAAAGTACCAAGCTCCC 57.070 40.909 0.00 0.00 0.00 4.30
83 84 8.978539 CGCATGCAGTAATCTAATAAGTTTCTA 58.021 33.333 19.57 0.00 0.00 2.10
84 85 7.519008 GCGCATGCAGTAATCTAATAAGTTTCT 60.519 37.037 19.57 0.00 42.15 2.52
85 86 6.575201 GCGCATGCAGTAATCTAATAAGTTTC 59.425 38.462 19.57 0.00 42.15 2.78
86 87 6.430451 GCGCATGCAGTAATCTAATAAGTTT 58.570 36.000 19.57 0.00 42.15 2.66
87 88 5.333339 CGCGCATGCAGTAATCTAATAAGTT 60.333 40.000 19.57 0.00 42.97 2.66
88 89 4.150627 CGCGCATGCAGTAATCTAATAAGT 59.849 41.667 19.57 0.00 42.97 2.24
89 90 4.150627 ACGCGCATGCAGTAATCTAATAAG 59.849 41.667 19.57 0.00 42.97 1.73
90 91 4.055360 ACGCGCATGCAGTAATCTAATAA 58.945 39.130 19.57 0.00 42.97 1.40
91 92 3.428534 CACGCGCATGCAGTAATCTAATA 59.571 43.478 19.57 0.00 42.97 0.98
92 93 2.221749 CACGCGCATGCAGTAATCTAAT 59.778 45.455 19.57 0.00 42.97 1.73
93 94 1.592543 CACGCGCATGCAGTAATCTAA 59.407 47.619 19.57 0.00 42.97 2.10
94 95 1.208259 CACGCGCATGCAGTAATCTA 58.792 50.000 19.57 0.00 42.97 1.98
95 96 0.740868 ACACGCGCATGCAGTAATCT 60.741 50.000 19.57 0.00 42.97 2.40
96 97 0.587242 CACACGCGCATGCAGTAATC 60.587 55.000 19.57 0.00 42.97 1.75
97 98 1.018752 TCACACGCGCATGCAGTAAT 61.019 50.000 19.57 6.02 42.97 1.89
98 99 1.224722 TTCACACGCGCATGCAGTAA 61.225 50.000 19.57 5.77 42.97 2.24
99 100 1.224722 TTTCACACGCGCATGCAGTA 61.225 50.000 19.57 0.00 42.97 2.74
100 101 2.057654 TTTTCACACGCGCATGCAGT 62.058 50.000 19.57 14.19 42.97 4.40
101 102 0.933973 TTTTTCACACGCGCATGCAG 60.934 50.000 19.57 13.48 42.97 4.41
102 103 1.064783 TTTTTCACACGCGCATGCA 59.935 47.368 19.57 0.00 42.97 3.96
103 104 3.915010 TTTTTCACACGCGCATGC 58.085 50.000 5.73 7.91 37.91 4.06
126 127 9.606631 ACAGCCTACAAAATACAAAAATTTCAA 57.393 25.926 0.00 0.00 0.00 2.69
156 157 2.436173 TGGGCCGGAATTTTGTCTTTTT 59.564 40.909 5.05 0.00 0.00 1.94
157 158 2.043227 TGGGCCGGAATTTTGTCTTTT 58.957 42.857 5.05 0.00 0.00 2.27
158 159 1.710816 TGGGCCGGAATTTTGTCTTT 58.289 45.000 5.05 0.00 0.00 2.52
159 160 1.343142 GTTGGGCCGGAATTTTGTCTT 59.657 47.619 5.05 0.00 0.00 3.01
160 161 0.966179 GTTGGGCCGGAATTTTGTCT 59.034 50.000 5.05 0.00 0.00 3.41
161 162 0.676736 TGTTGGGCCGGAATTTTGTC 59.323 50.000 5.05 0.00 0.00 3.18
162 163 1.123928 TTGTTGGGCCGGAATTTTGT 58.876 45.000 5.05 0.00 0.00 2.83
163 164 1.202580 TGTTGTTGGGCCGGAATTTTG 60.203 47.619 5.05 0.00 0.00 2.44
164 165 1.123928 TGTTGTTGGGCCGGAATTTT 58.876 45.000 5.05 0.00 0.00 1.82
165 166 1.123928 TTGTTGTTGGGCCGGAATTT 58.876 45.000 5.05 0.00 0.00 1.82
166 167 1.123928 TTTGTTGTTGGGCCGGAATT 58.876 45.000 5.05 0.00 0.00 2.17
167 168 1.123928 TTTTGTTGTTGGGCCGGAAT 58.876 45.000 5.05 0.00 0.00 3.01
168 169 0.902531 TTTTTGTTGTTGGGCCGGAA 59.097 45.000 5.05 0.00 0.00 4.30
169 170 2.591915 TTTTTGTTGTTGGGCCGGA 58.408 47.368 5.05 0.00 0.00 5.14
185 186 4.344359 TTTCTAAAATGGGCCGCTTTTT 57.656 36.364 18.20 15.91 0.00 1.94
186 187 4.551702 ATTTCTAAAATGGGCCGCTTTT 57.448 36.364 17.42 17.42 0.00 2.27
187 188 5.128663 ACATATTTCTAAAATGGGCCGCTTT 59.871 36.000 0.00 3.29 0.00 3.51
188 189 4.649218 ACATATTTCTAAAATGGGCCGCTT 59.351 37.500 0.00 0.00 0.00 4.68
189 190 4.215109 ACATATTTCTAAAATGGGCCGCT 58.785 39.130 0.00 0.00 0.00 5.52
190 191 4.584327 ACATATTTCTAAAATGGGCCGC 57.416 40.909 0.00 0.00 0.00 6.53
191 192 7.333174 ACAAAAACATATTTCTAAAATGGGCCG 59.667 33.333 0.00 0.00 0.00 6.13
192 193 8.560355 ACAAAAACATATTTCTAAAATGGGCC 57.440 30.769 0.00 0.00 0.00 5.80
193 194 9.435688 AGACAAAAACATATTTCTAAAATGGGC 57.564 29.630 0.00 0.00 0.00 5.36
220 221 1.328069 CACACGTGGCGTACAGAAAAA 59.672 47.619 21.57 0.00 38.32 1.94
221 222 0.931702 CACACGTGGCGTACAGAAAA 59.068 50.000 21.57 0.00 38.32 2.29
222 223 0.102663 TCACACGTGGCGTACAGAAA 59.897 50.000 21.57 0.00 38.32 2.52
223 224 0.102663 TTCACACGTGGCGTACAGAA 59.897 50.000 21.57 8.85 38.32 3.02
224 225 0.102663 TTTCACACGTGGCGTACAGA 59.897 50.000 21.57 3.06 38.32 3.41
225 226 0.506932 CTTTCACACGTGGCGTACAG 59.493 55.000 21.57 4.00 38.32 2.74
226 227 0.179105 ACTTTCACACGTGGCGTACA 60.179 50.000 21.57 0.00 38.32 2.90
227 228 1.769733 TACTTTCACACGTGGCGTAC 58.230 50.000 21.57 0.00 38.32 3.67
228 229 2.728690 ATACTTTCACACGTGGCGTA 57.271 45.000 21.57 12.75 38.32 4.42
229 230 2.728690 TATACTTTCACACGTGGCGT 57.271 45.000 21.57 11.01 42.36 5.68
230 231 2.284150 CCATATACTTTCACACGTGGCG 59.716 50.000 21.57 10.79 0.00 5.69
231 232 3.267483 ACCATATACTTTCACACGTGGC 58.733 45.455 21.57 0.00 0.00 5.01
232 233 6.759356 TCATAACCATATACTTTCACACGTGG 59.241 38.462 21.57 9.11 0.00 4.94
233 234 7.764695 TCATAACCATATACTTTCACACGTG 57.235 36.000 15.48 15.48 0.00 4.49
234 235 8.958119 ATTCATAACCATATACTTTCACACGT 57.042 30.769 0.00 0.00 0.00 4.49
246 247 9.462174 CGTATGTGCAAAAATTCATAACCATAT 57.538 29.630 0.00 0.00 0.00 1.78
247 248 7.433719 GCGTATGTGCAAAAATTCATAACCATA 59.566 33.333 0.00 0.00 34.15 2.74
248 249 6.255453 GCGTATGTGCAAAAATTCATAACCAT 59.745 34.615 0.00 0.00 34.15 3.55
249 250 5.574830 GCGTATGTGCAAAAATTCATAACCA 59.425 36.000 0.00 0.00 34.15 3.67
250 251 5.574830 TGCGTATGTGCAAAAATTCATAACC 59.425 36.000 0.00 0.00 43.02 2.85
251 252 6.624710 TGCGTATGTGCAAAAATTCATAAC 57.375 33.333 0.00 0.00 43.02 1.89
263 264 4.813697 ACATATGTGTATTGCGTATGTGCA 59.186 37.500 7.78 0.00 43.41 4.57
264 265 5.342806 ACATATGTGTATTGCGTATGTGC 57.657 39.130 7.78 0.00 43.41 4.57
266 267 6.512297 TCTCACATATGTGTATTGCGTATGT 58.488 36.000 30.03 4.82 44.92 2.29
267 268 6.642540 ACTCTCACATATGTGTATTGCGTATG 59.357 38.462 30.03 14.25 45.76 2.39
268 269 6.642540 CACTCTCACATATGTGTATTGCGTAT 59.357 38.462 30.03 9.15 45.76 3.06
269 270 5.977129 CACTCTCACATATGTGTATTGCGTA 59.023 40.000 30.03 11.61 45.76 4.42
270 271 4.805719 CACTCTCACATATGTGTATTGCGT 59.194 41.667 30.03 18.09 45.76 5.24
271 272 4.805719 ACACTCTCACATATGTGTATTGCG 59.194 41.667 30.03 19.03 45.76 4.85
272 273 6.756542 TGTACACTCTCACATATGTGTATTGC 59.243 38.462 30.03 15.73 44.29 3.56
273 274 7.759433 TGTGTACACTCTCACATATGTGTATTG 59.241 37.037 30.03 23.93 44.29 1.90
274 275 7.836842 TGTGTACACTCTCACATATGTGTATT 58.163 34.615 30.03 14.45 44.29 1.89
275 276 7.404671 TGTGTACACTCTCACATATGTGTAT 57.595 36.000 30.03 14.60 44.29 2.29
276 277 6.827586 TGTGTACACTCTCACATATGTGTA 57.172 37.500 30.03 20.09 45.76 2.90
277 278 5.722021 TGTGTACACTCTCACATATGTGT 57.278 39.130 30.03 15.69 45.76 3.72
278 279 6.401474 GCTTTGTGTACACTCTCACATATGTG 60.401 42.308 26.83 26.83 46.91 3.21
279 280 5.639506 GCTTTGTGTACACTCTCACATATGT 59.360 40.000 25.60 1.41 42.77 2.29
280 281 5.639082 TGCTTTGTGTACACTCTCACATATG 59.361 40.000 25.60 0.00 42.77 1.78
281 282 5.793817 TGCTTTGTGTACACTCTCACATAT 58.206 37.500 25.60 0.00 42.77 1.78
282 283 5.208463 TGCTTTGTGTACACTCTCACATA 57.792 39.130 25.60 0.81 42.77 2.29
283 284 4.071961 TGCTTTGTGTACACTCTCACAT 57.928 40.909 25.60 0.00 42.77 3.21
284 285 3.535280 TGCTTTGTGTACACTCTCACA 57.465 42.857 25.60 14.58 41.81 3.58
285 286 4.875544 TTTGCTTTGTGTACACTCTCAC 57.124 40.909 25.60 12.37 35.43 3.51
286 287 4.697828 TGTTTTGCTTTGTGTACACTCTCA 59.302 37.500 25.60 15.03 0.00 3.27
287 288 5.229921 TGTTTTGCTTTGTGTACACTCTC 57.770 39.130 25.60 12.87 0.00 3.20
288 289 5.835113 ATGTTTTGCTTTGTGTACACTCT 57.165 34.783 25.60 0.00 0.00 3.24
289 290 5.171337 CGAATGTTTTGCTTTGTGTACACTC 59.829 40.000 25.60 12.88 0.00 3.51
290 291 5.034152 CGAATGTTTTGCTTTGTGTACACT 58.966 37.500 25.60 1.37 0.00 3.55
291 292 4.206200 CCGAATGTTTTGCTTTGTGTACAC 59.794 41.667 19.36 19.36 0.00 2.90
292 293 4.355437 CCGAATGTTTTGCTTTGTGTACA 58.645 39.130 0.00 0.00 0.00 2.90
304 305 0.603065 GCTCCAAGGCCGAATGTTTT 59.397 50.000 0.00 0.00 0.00 2.43
334 359 4.240103 CTGCATCCGCCGATCCCA 62.240 66.667 0.00 0.00 37.32 4.37
336 361 4.916293 TGCTGCATCCGCCGATCC 62.916 66.667 0.00 0.00 37.32 3.36
337 362 3.643978 GTGCTGCATCCGCCGATC 61.644 66.667 5.27 0.00 37.32 3.69
343 368 3.129502 CTGGTGGTGCTGCATCCG 61.130 66.667 10.91 5.08 0.00 4.18
344 369 2.753043 CCTGGTGGTGCTGCATCC 60.753 66.667 10.91 11.82 0.00 3.51
345 370 3.446570 GCCTGGTGGTGCTGCATC 61.447 66.667 5.27 5.56 35.27 3.91
349 374 4.624364 TGTCGCCTGGTGGTGCTG 62.624 66.667 7.51 0.00 43.26 4.41
350 375 4.626081 GTGTCGCCTGGTGGTGCT 62.626 66.667 7.51 0.00 43.26 4.40
352 377 4.293648 TCGTGTCGCCTGGTGGTG 62.294 66.667 7.51 0.00 44.86 4.17
353 378 4.295119 GTCGTGTCGCCTGGTGGT 62.295 66.667 7.51 0.00 35.27 4.16
354 379 4.293648 TGTCGTGTCGCCTGGTGG 62.294 66.667 7.51 0.00 0.00 4.61
355 380 2.734723 CTGTCGTGTCGCCTGGTG 60.735 66.667 0.00 0.00 0.00 4.17
356 381 3.991051 CCTGTCGTGTCGCCTGGT 61.991 66.667 0.00 0.00 0.00 4.00
412 453 4.467084 GTCGATGGCGGCCTTCCA 62.467 66.667 24.29 14.89 35.76 3.53
467 508 2.049627 ATGGATGCTTCCTCGGCTCC 62.050 60.000 18.67 0.00 43.07 4.70
505 546 0.460722 TCGTGAACGACAAAGGTGGA 59.539 50.000 0.50 0.00 44.22 4.02
544 585 6.374613 CAGTCGTCAGGGAGCATATAGTAATA 59.625 42.308 0.00 0.00 0.00 0.98
560 601 1.592223 GGGAGGGAACAGTCGTCAG 59.408 63.158 0.00 0.00 0.00 3.51
561 602 2.273179 CGGGAGGGAACAGTCGTCA 61.273 63.158 0.00 0.00 0.00 4.35
562 603 2.572284 CGGGAGGGAACAGTCGTC 59.428 66.667 0.00 0.00 0.00 4.20
563 604 3.692406 GCGGGAGGGAACAGTCGT 61.692 66.667 0.00 0.00 0.00 4.34
564 605 3.382832 AGCGGGAGGGAACAGTCG 61.383 66.667 0.00 0.00 0.00 4.18
565 606 2.266055 CAGCGGGAGGGAACAGTC 59.734 66.667 0.00 0.00 0.00 3.51
566 607 2.203788 TCAGCGGGAGGGAACAGT 60.204 61.111 0.00 0.00 0.00 3.55
567 608 2.266055 GTCAGCGGGAGGGAACAG 59.734 66.667 0.00 0.00 0.00 3.16
568 609 3.319198 GGTCAGCGGGAGGGAACA 61.319 66.667 0.00 0.00 0.00 3.18
569 610 4.097361 GGGTCAGCGGGAGGGAAC 62.097 72.222 0.00 0.00 0.00 3.62
570 611 4.649705 TGGGTCAGCGGGAGGGAA 62.650 66.667 0.00 0.00 0.00 3.97
571 612 4.649705 TTGGGTCAGCGGGAGGGA 62.650 66.667 0.00 0.00 0.00 4.20
572 613 4.410400 GTTGGGTCAGCGGGAGGG 62.410 72.222 0.00 0.00 0.00 4.30
573 614 4.760047 CGTTGGGTCAGCGGGAGG 62.760 72.222 0.00 0.00 34.62 4.30
646 698 3.455469 GCCCCAATCTGCTGCACC 61.455 66.667 0.00 0.00 0.00 5.01
648 700 2.677524 GTGCCCCAATCTGCTGCA 60.678 61.111 0.88 0.88 0.00 4.41
833 891 2.360475 GCCTCTGACTTGGTGGGC 60.360 66.667 0.00 0.00 0.00 5.36
1393 1482 1.516603 GCAACCTAGAGGCGACGAC 60.517 63.158 0.00 0.00 39.32 4.34
1470 1559 9.791820 TGATATGATTTTGCTGAAACTTGTATG 57.208 29.630 0.00 0.00 0.00 2.39
1489 1578 1.202758 GGCCCATGGTCGTTGATATGA 60.203 52.381 11.73 0.00 0.00 2.15
1509 1598 3.303990 CGACCAATATGGCTTTGGATTCG 60.304 47.826 17.38 13.63 45.35 3.34
1634 1723 3.200165 TCTTGTCCTCTCCTCTCGTGATA 59.800 47.826 0.00 0.00 0.00 2.15
1764 1853 3.154589 GGTTCTCCTAAACCGCCTG 57.845 57.895 0.00 0.00 39.40 4.85
1791 1880 1.905839 TATGCCCTCCCTTGATCCAA 58.094 50.000 0.00 0.00 0.00 3.53
1824 1913 1.390565 CCTCGTAGACTGACCCGAAT 58.609 55.000 0.00 0.00 0.00 3.34
1863 1952 3.616219 TGTTCACAAAGTAAGCAGGTGT 58.384 40.909 0.00 0.00 0.00 4.16
1910 1999 5.268387 TGGTAATTGCAAACCCATAGACAT 58.732 37.500 16.03 0.00 34.69 3.06
1930 2019 6.939132 TGCATCAAATTTGACAAAATTGGT 57.061 29.167 22.71 16.14 43.63 3.67
1934 2023 9.804758 AAAATGTTGCATCAAATTTGACAAAAT 57.195 22.222 22.71 18.76 40.49 1.82
1935 2024 9.073368 CAAAATGTTGCATCAAATTTGACAAAA 57.927 25.926 22.71 17.49 40.49 2.44
1936 2025 8.242053 ACAAAATGTTGCATCAAATTTGACAAA 58.758 25.926 28.18 13.98 37.92 2.83
1951 2040 6.668323 TCTGCTAGACTTAACAAAATGTTGC 58.332 36.000 6.01 0.23 41.30 4.17
1967 2056 8.049117 ACCAATTATGAAACATCTTCTGCTAGA 58.951 33.333 0.00 0.00 0.00 2.43
1993 2082 1.989864 CGACAAGTGTAGCGCATACAA 59.010 47.619 11.47 0.00 45.88 2.41
2017 2106 1.080093 GTGCTAGTGGCTGCGTACA 60.080 57.895 0.00 0.00 42.39 2.90
2021 2110 2.447887 CGAAGTGCTAGTGGCTGCG 61.448 63.158 0.00 0.00 42.39 5.18
2031 2120 2.100584 TCAAACCAATTTGCGAAGTGCT 59.899 40.909 8.66 0.00 44.22 4.40
2092 2181 4.575645 CCTCAAGAATCTTCATCAAGCTCC 59.424 45.833 0.00 0.00 0.00 4.70
2130 2219 6.541641 AGATTTCTCAGAGTTCATGCATAACC 59.458 38.462 0.00 0.29 0.00 2.85
2450 2539 9.477484 GTATAATAGAGTTATGGTTCACAGTGG 57.523 37.037 0.00 0.00 0.00 4.00
2456 2545 8.647796 CAGGTGGTATAATAGAGTTATGGTTCA 58.352 37.037 0.00 0.00 0.00 3.18
2484 2578 9.411801 CAAGTAACGCAGATGATATGTAACTAT 57.588 33.333 0.00 0.00 0.00 2.12
2485 2579 8.410912 ACAAGTAACGCAGATGATATGTAACTA 58.589 33.333 0.00 0.00 0.00 2.24
2490 2584 6.106003 TCAACAAGTAACGCAGATGATATGT 58.894 36.000 0.00 0.00 0.00 2.29
2491 2585 6.476706 TCTCAACAAGTAACGCAGATGATATG 59.523 38.462 0.00 0.00 0.00 1.78
2501 2595 1.864711 TGCACTCTCAACAAGTAACGC 59.135 47.619 0.00 0.00 0.00 4.84
2510 2604 2.032204 CAGCTGAAGTTGCACTCTCAAC 60.032 50.000 8.42 0.00 44.88 3.18
2517 2611 1.598924 GCTCAACAGCTGAAGTTGCAC 60.599 52.381 23.35 6.33 44.50 4.57
2598 2693 7.390440 CCCATCACTGTAAGAGAATGTTAAACA 59.610 37.037 0.00 0.00 37.04 2.83
2720 2818 4.687483 AGTGAAACAATTGCTTTAGCATGC 59.313 37.500 10.51 10.51 46.40 4.06
2728 2826 5.043248 GCAGTGTAAGTGAAACAATTGCTT 58.957 37.500 5.05 0.00 40.62 3.91
2741 2839 8.404107 ACATAATGTTTTAAGGCAGTGTAAGT 57.596 30.769 0.00 0.00 0.00 2.24
2758 2860 7.665559 ACCAAGACAGTGATAACAACATAATGT 59.334 33.333 0.00 0.00 34.24 2.71
2759 2861 8.044060 ACCAAGACAGTGATAACAACATAATG 57.956 34.615 0.00 0.00 0.00 1.90
2760 2862 8.635765 AACCAAGACAGTGATAACAACATAAT 57.364 30.769 0.00 0.00 0.00 1.28
2763 2865 9.905713 ATATAACCAAGACAGTGATAACAACAT 57.094 29.630 0.00 0.00 0.00 2.71
2764 2866 9.161629 CATATAACCAAGACAGTGATAACAACA 57.838 33.333 0.00 0.00 0.00 3.33
2765 2867 8.612619 CCATATAACCAAGACAGTGATAACAAC 58.387 37.037 0.00 0.00 0.00 3.32
2982 3085 3.442625 GGTAATGAAAAGTACACAGGGGC 59.557 47.826 0.00 0.00 0.00 5.80
3049 3153 8.710749 AATCTAGCTGAGAAATCTCTACATCT 57.289 34.615 11.45 4.55 43.25 2.90
3162 3266 5.039333 CCCTCCGTAACTTAATGTAAGACG 58.961 45.833 2.11 2.93 39.09 4.18
3169 3273 7.011109 CACAAATACTCCCTCCGTAACTTAATG 59.989 40.741 0.00 0.00 0.00 1.90
3235 3339 2.485795 GCAAAACGTCCAGCCCACA 61.486 57.895 0.00 0.00 0.00 4.17
3625 3733 4.973168 AGTCAGCAGAAAATGGAGTACAA 58.027 39.130 0.00 0.00 0.00 2.41
3639 3747 3.870419 GGCAGATTAGAAAGAGTCAGCAG 59.130 47.826 0.00 0.00 0.00 4.24
3742 3851 1.089920 AAGGCGCAATAGCTCAACTG 58.910 50.000 10.83 0.00 39.10 3.16
3756 3865 3.440173 ACCAACATGATGTAGAAAAGGCG 59.560 43.478 0.00 0.00 0.00 5.52
3796 3905 6.939730 TGAGTAAGAACAACATGATGCCTTTA 59.060 34.615 13.62 4.00 0.00 1.85
3924 4035 4.948847 TGGACTCGTATTCTGGATCATTG 58.051 43.478 0.00 0.00 0.00 2.82
3937 4048 0.609957 ACGTGGACCATGGACTCGTA 60.610 55.000 26.95 6.66 0.00 3.43
3990 4101 2.959030 TCCCTCCACAGACTATGATTCG 59.041 50.000 0.00 0.00 0.00 3.34
4218 6630 4.294416 TCACAAAACGTACACAATTGGG 57.706 40.909 6.04 6.04 0.00 4.12
4712 7182 7.957484 CACAACTCTGATATTAAGAAAACCACG 59.043 37.037 0.00 0.00 0.00 4.94
4755 7225 1.948145 GGCAGGAGAGAAGATTGCATG 59.052 52.381 0.00 0.00 36.53 4.06
4965 7435 5.577945 ACAAGCAAATGTGTTAGCAATATGC 59.422 36.000 0.00 0.00 36.41 3.14
5190 7660 3.194755 GTGAACAAGGAACACTTTTGGGT 59.805 43.478 0.00 0.00 37.29 4.51
5234 7704 5.061853 GCTATCTCAATGCTGAAATCTCCA 58.938 41.667 0.00 0.00 0.00 3.86
5245 7715 4.000331 TGGAAGCTAGCTATCTCAATGC 58.000 45.455 19.70 6.26 0.00 3.56
5274 7744 1.340991 ACCGAATGCCAATAGGTGCTT 60.341 47.619 0.00 0.00 37.19 3.91
5284 7754 2.432444 CTACCTTTCAACCGAATGCCA 58.568 47.619 0.00 0.00 0.00 4.92
5292 7762 2.185004 TGCTGAGCTACCTTTCAACC 57.815 50.000 5.83 0.00 0.00 3.77
5308 7778 7.334090 AGTAAACATATCTCACTCATGTTGCT 58.666 34.615 0.35 0.70 40.94 3.91
5347 7818 9.807921 AAAATGTTCTTATATTATGGGACGGAT 57.192 29.630 0.00 0.00 0.00 4.18
5409 7880 8.784043 GTCCCATAATATAAGAGCGTTTTTGAT 58.216 33.333 0.00 0.00 0.00 2.57
5410 7881 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
5412 7883 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
5413 7884 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
5414 7885 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
5415 7886 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
5416 7887 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
5417 7888 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
5418 7889 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
5419 7890 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
5420 7891 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
5421 7892 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
5422 7893 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
5423 7894 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
5424 7895 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
5425 7896 3.501019 GGTACTCCCTCCGTCCCATAATA 60.501 52.174 0.00 0.00 0.00 0.98
5426 7897 2.606378 GTACTCCCTCCGTCCCATAAT 58.394 52.381 0.00 0.00 0.00 1.28
5427 7898 1.412074 GGTACTCCCTCCGTCCCATAA 60.412 57.143 0.00 0.00 0.00 1.90
5428 7899 0.186873 GGTACTCCCTCCGTCCCATA 59.813 60.000 0.00 0.00 0.00 2.74
5429 7900 1.075450 GGTACTCCCTCCGTCCCAT 60.075 63.158 0.00 0.00 0.00 4.00
5430 7901 1.807771 AAGGTACTCCCTCCGTCCCA 61.808 60.000 0.00 0.00 45.47 4.37
5431 7902 1.001376 AAGGTACTCCCTCCGTCCC 59.999 63.158 0.00 0.00 45.47 4.46
5432 7903 1.957765 GCAAGGTACTCCCTCCGTCC 61.958 65.000 0.00 0.00 45.47 4.79
5433 7904 0.971447 AGCAAGGTACTCCCTCCGTC 60.971 60.000 0.00 0.00 45.47 4.79
5434 7905 1.078710 AGCAAGGTACTCCCTCCGT 59.921 57.895 0.00 0.00 45.47 4.69
5435 7906 1.517832 CAGCAAGGTACTCCCTCCG 59.482 63.158 0.00 0.00 45.47 4.63
5436 7907 1.908483 CCAGCAAGGTACTCCCTCC 59.092 63.158 0.00 0.00 45.47 4.30
5437 7908 1.222113 GCCAGCAAGGTACTCCCTC 59.778 63.158 0.00 0.00 45.47 4.30
5439 7910 1.078143 CAGCCAGCAAGGTACTCCC 60.078 63.158 0.00 0.00 38.49 4.30
5440 7911 0.391793 GTCAGCCAGCAAGGTACTCC 60.392 60.000 0.00 0.00 38.49 3.85
5441 7912 0.321671 TGTCAGCCAGCAAGGTACTC 59.678 55.000 0.00 0.00 38.49 2.59
5442 7913 0.322975 CTGTCAGCCAGCAAGGTACT 59.677 55.000 0.00 0.00 40.61 2.73
5443 7914 0.674895 CCTGTCAGCCAGCAAGGTAC 60.675 60.000 0.00 0.00 40.06 3.34
5444 7915 0.835971 TCCTGTCAGCCAGCAAGGTA 60.836 55.000 0.00 0.00 40.06 3.08
5445 7916 1.495579 ATCCTGTCAGCCAGCAAGGT 61.496 55.000 0.00 0.00 40.06 3.50
5446 7917 0.323178 AATCCTGTCAGCCAGCAAGG 60.323 55.000 0.00 0.00 40.06 3.61
5447 7918 1.201647 CAAATCCTGTCAGCCAGCAAG 59.798 52.381 0.00 0.00 40.06 4.01
5448 7919 1.250328 CAAATCCTGTCAGCCAGCAA 58.750 50.000 0.00 0.00 40.06 3.91
5449 7920 0.111061 ACAAATCCTGTCAGCCAGCA 59.889 50.000 0.00 0.00 40.06 4.41
5450 7921 1.251251 AACAAATCCTGTCAGCCAGC 58.749 50.000 0.00 0.00 40.06 4.85
5451 7922 3.152341 AGAAACAAATCCTGTCAGCCAG 58.848 45.455 0.00 0.00 37.23 4.85
5459 7930 3.129988 GGCTCCATGAGAAACAAATCCTG 59.870 47.826 0.00 0.00 0.00 3.86
5498 7969 3.220940 TGCACATCTTTCATTCCACACA 58.779 40.909 0.00 0.00 0.00 3.72
5566 8037 5.405571 GTGAACTGTACAGGTGTGATGTAAG 59.594 44.000 26.12 0.00 35.04 2.34
5573 8044 4.212004 CAGAATGTGAACTGTACAGGTGTG 59.788 45.833 26.12 2.53 0.00 3.82
5574 8045 4.380531 CAGAATGTGAACTGTACAGGTGT 58.619 43.478 26.12 11.41 0.00 4.16
5575 8046 4.997905 CAGAATGTGAACTGTACAGGTG 57.002 45.455 26.12 3.32 0.00 4.00
5637 8108 0.036306 TCTTTTGGAACGGAGGGAGC 59.964 55.000 0.00 0.00 0.00 4.70
5655 8126 0.741915 TTTCCGTGGTTTGGCACTTC 59.258 50.000 0.00 0.00 0.00 3.01
5660 8131 4.373527 AGTTTAAATTTCCGTGGTTTGGC 58.626 39.130 0.00 0.00 0.00 4.52
5661 8132 8.329583 GTTTTAGTTTAAATTTCCGTGGTTTGG 58.670 33.333 0.00 0.00 0.00 3.28
5662 8133 8.329583 GGTTTTAGTTTAAATTTCCGTGGTTTG 58.670 33.333 0.00 0.00 0.00 2.93
5663 8134 8.039538 TGGTTTTAGTTTAAATTTCCGTGGTTT 58.960 29.630 0.00 0.00 0.00 3.27
5664 8135 7.492020 GTGGTTTTAGTTTAAATTTCCGTGGTT 59.508 33.333 0.00 0.00 0.00 3.67
5665 8136 6.979817 GTGGTTTTAGTTTAAATTTCCGTGGT 59.020 34.615 0.00 0.00 0.00 4.16
5668 8139 6.207928 CCGTGGTTTTAGTTTAAATTTCCGT 58.792 36.000 0.00 0.00 0.00 4.69
5670 8141 5.117440 CGCCGTGGTTTTAGTTTAAATTTCC 59.883 40.000 0.00 0.00 0.00 3.13
5671 8142 5.387649 GCGCCGTGGTTTTAGTTTAAATTTC 60.388 40.000 0.00 0.00 0.00 2.17
5678 8165 1.280444 CGCGCCGTGGTTTTAGTTT 59.720 52.632 0.00 0.00 0.00 2.66
5694 8181 0.109504 TTCCAAAATAAGTGCCGCGC 60.110 50.000 0.00 0.00 0.00 6.86
5720 8212 6.070824 TGGAGCAAGATCACAGTCAAATACTA 60.071 38.462 0.00 0.00 35.76 1.82
5824 8316 1.399440 GCGCATCTGGTGGCATATATG 59.601 52.381 8.45 8.45 0.00 1.78
5825 8317 1.003464 TGCGCATCTGGTGGCATATAT 59.997 47.619 5.66 0.00 31.77 0.86
5826 8318 0.396060 TGCGCATCTGGTGGCATATA 59.604 50.000 5.66 0.00 31.77 0.86
5831 8323 4.564116 GCATGCGCATCTGGTGGC 62.564 66.667 22.51 16.26 38.36 5.01
5881 8373 0.671781 AGGCAAGAAGTAGCACTGCG 60.672 55.000 0.00 0.00 0.00 5.18
5896 8388 3.423749 TGAATCTTTTGATGAGCAGGCA 58.576 40.909 0.00 0.00 39.48 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.