Multiple sequence alignment - TraesCS6A01G326900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G326900 chr6A 100.000 5693 0 0 1 5693 560211452 560205760 0.000000e+00 10514.0
1 TraesCS6A01G326900 chr6D 95.852 2290 75 8 2844 5122 417756690 417754410 0.000000e+00 3685.0
2 TraesCS6A01G326900 chr6D 92.546 1999 85 33 641 2628 417758782 417756837 0.000000e+00 2808.0
3 TraesCS6A01G326900 chr6D 84.539 608 69 8 1 605 417759360 417758775 3.820000e-161 579.0
4 TraesCS6A01G326900 chr6D 89.892 277 22 5 5123 5397 417754348 417754076 9.080000e-93 351.0
5 TraesCS6A01G326900 chr6D 92.568 148 10 1 2664 2811 417756834 417756688 1.610000e-50 211.0
6 TraesCS6A01G326900 chr6B 94.730 2353 88 16 2799 5122 626452148 626454493 0.000000e+00 3626.0
7 TraesCS6A01G326900 chr6B 90.614 2035 126 31 643 2636 626450134 626452144 0.000000e+00 2639.0
8 TraesCS6A01G326900 chr6B 88.820 322 26 8 985 1302 529894809 529895124 2.490000e-103 387.0
9 TraesCS6A01G326900 chr6B 89.950 199 16 3 5120 5317 626454552 626454747 2.630000e-63 254.0
10 TraesCS6A01G326900 chr6B 81.471 340 32 14 268 604 626449830 626450141 3.410000e-62 250.0
11 TraesCS6A01G326900 chr1D 87.313 402 39 5 985 1381 338064563 338064169 3.130000e-122 449.0
12 TraesCS6A01G326900 chr3D 87.065 402 40 4 985 1381 479953639 479954033 1.460000e-120 444.0
13 TraesCS6A01G326900 chr4A 86.070 402 44 5 985 1381 723125589 723125983 6.820000e-114 422.0
14 TraesCS6A01G326900 chr4A 83.623 403 48 5 990 1381 712001594 712001989 4.190000e-96 363.0
15 TraesCS6A01G326900 chr2B 88.509 322 27 4 985 1302 795472777 795473092 1.160000e-101 381.0
16 TraesCS6A01G326900 chr7B 84.158 404 46 5 989 1381 263733013 263733409 5.390000e-100 375.0
17 TraesCS6A01G326900 chr7B 80.328 122 18 5 268 385 479490288 479490169 2.830000e-13 87.9
18 TraesCS6A01G326900 chr7D 80.349 229 21 10 3699 3916 2234966 2234751 9.880000e-33 152.0
19 TraesCS6A01G326900 chr7D 80.455 220 20 14 3699 3908 2235506 2235300 4.600000e-31 147.0
20 TraesCS6A01G326900 chr7D 80.342 117 17 5 268 380 457179840 457179726 3.660000e-12 84.2
21 TraesCS6A01G326900 chr7A 78.017 232 26 13 3699 3916 1841888 1841668 7.750000e-24 122.0
22 TraesCS6A01G326900 chr3A 91.045 67 1 5 5623 5688 589847312 589847374 1.020000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G326900 chr6A 560205760 560211452 5692 True 10514.00 10514 100.00000 1 5693 1 chr6A.!!$R1 5692
1 TraesCS6A01G326900 chr6D 417754076 417759360 5284 True 1526.80 3685 91.07940 1 5397 5 chr6D.!!$R1 5396
2 TraesCS6A01G326900 chr6B 626449830 626454747 4917 False 1692.25 3626 89.19125 268 5317 4 chr6B.!!$F2 5049

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
733 739 0.178932 AAGGGAAAGAAACAGGCCCC 60.179 55.0 0.00 0.0 39.68 5.80 F
1263 1275 0.540830 AGGTGAGCGTCTCCTCTTGT 60.541 55.0 4.73 0.0 35.63 3.16 F
2264 2319 0.784778 GTGCAGTCTGTCGTACTTGC 59.215 55.0 0.93 0.0 0.00 4.01 F
2499 2557 0.591170 GCTTAGTTTGCGGTTGCTGA 59.409 50.0 0.00 0.0 43.34 4.26 F
2954 3013 0.746063 TGTGCAAGTTGGAAAGCCAG 59.254 50.0 4.75 0.0 46.91 4.85 F
2955 3014 0.746659 GTGCAAGTTGGAAAGCCAGT 59.253 50.0 4.75 0.0 46.91 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2264 2319 1.011333 ACACGTGAACCTCAAAACCG 58.989 50.000 25.01 0.00 0.00 4.44 R
2307 2362 1.165907 CGAGCAGCACCCTGACAAAA 61.166 55.000 0.00 0.00 41.77 2.44 R
3518 3577 1.212935 GCCACAGGATTACCATCACCT 59.787 52.381 0.00 0.00 38.94 4.00 R
4302 4363 0.184692 TGTTGGGTCCTGTCATTGCA 59.815 50.000 0.00 0.00 0.00 4.08 R
4505 4566 0.603707 CTTGGGTCTGTGCGTCACAT 60.604 55.000 12.03 0.00 43.71 3.21 R
4763 4828 4.120331 GTCCAACCTGGCGCATGC 62.120 66.667 10.83 7.91 37.47 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.747460 TACGAGGTCACCGTCCGG 60.747 66.667 3.76 3.76 40.95 5.14
29 30 2.268730 CCGTCCGGTACAAGTTAGTC 57.731 55.000 0.00 0.00 0.00 2.59
32 33 3.064545 CCGTCCGGTACAAGTTAGTCTAG 59.935 52.174 0.00 0.00 0.00 2.43
36 37 5.047731 GTCCGGTACAAGTTAGTCTAGGTTT 60.048 44.000 0.00 0.00 0.00 3.27
37 38 5.539955 TCCGGTACAAGTTAGTCTAGGTTTT 59.460 40.000 0.00 0.00 0.00 2.43
61 62 7.429636 TTTAGGTTTTAGTTGAACGGATGAG 57.570 36.000 0.00 0.00 0.00 2.90
67 68 7.306632 GGTTTTAGTTGAACGGATGAGATATCG 60.307 40.741 0.00 0.00 0.00 2.92
75 76 4.810790 ACGGATGAGATATCGTCCAATTC 58.189 43.478 24.65 1.79 44.06 2.17
90 91 6.770303 TCGTCCAATTCATATAAATTCTGGCA 59.230 34.615 0.00 0.00 0.00 4.92
102 103 5.904362 AAATTCTGGCAGAAGTTATGTCC 57.096 39.130 33.81 2.17 40.26 4.02
109 111 3.120304 GGCAGAAGTTATGTCCGTTGAAC 60.120 47.826 0.00 0.00 0.00 3.18
117 119 1.141645 TGTCCGTTGAACGAATTCCG 58.858 50.000 20.47 0.84 46.05 4.30
128 130 2.610219 CGAATTCCGTCATGTTTGCA 57.390 45.000 0.00 0.00 0.00 4.08
129 131 2.927429 CGAATTCCGTCATGTTTGCAA 58.073 42.857 0.00 0.00 0.00 4.08
158 160 2.548057 GTCCGAATGAGTTTGAGTTGCA 59.452 45.455 0.00 0.00 0.00 4.08
161 163 2.666619 CGAATGAGTTTGAGTTGCAGGC 60.667 50.000 0.00 0.00 0.00 4.85
167 169 0.603707 TTTGAGTTGCAGGCGGAGAG 60.604 55.000 0.00 0.00 0.00 3.20
172 174 3.474486 TTGCAGGCGGAGAGTTGCA 62.474 57.895 0.00 0.00 44.09 4.08
178 180 2.866028 CGGAGAGTTGCAGCAAGC 59.134 61.111 8.49 3.80 45.96 4.01
188 190 2.879907 CAGCAAGCGTTGGATGGG 59.120 61.111 0.00 0.00 0.00 4.00
195 197 4.473520 CGTTGGATGGGCGGCTCT 62.474 66.667 9.56 0.00 0.00 4.09
214 216 1.273606 CTCGAACCACTGTCCACAGAT 59.726 52.381 13.75 0.00 46.59 2.90
222 224 2.509336 GTCCACAGATGCGTCCGG 60.509 66.667 1.23 0.00 0.00 5.14
223 225 2.678580 TCCACAGATGCGTCCGGA 60.679 61.111 0.00 0.00 0.00 5.14
226 228 1.439228 CACAGATGCGTCCGGAGAT 59.561 57.895 3.06 0.00 0.00 2.75
227 229 0.873312 CACAGATGCGTCCGGAGATG 60.873 60.000 3.06 0.00 0.00 2.90
230 232 1.043816 AGATGCGTCCGGAGATGAAT 58.956 50.000 3.06 0.00 28.94 2.57
231 233 2.029918 CAGATGCGTCCGGAGATGAATA 60.030 50.000 3.06 0.00 26.10 1.75
232 234 2.230025 AGATGCGTCCGGAGATGAATAG 59.770 50.000 3.06 0.00 26.10 1.73
233 235 1.399714 TGCGTCCGGAGATGAATAGT 58.600 50.000 3.06 0.00 0.00 2.12
234 236 1.067060 TGCGTCCGGAGATGAATAGTG 59.933 52.381 3.06 0.00 0.00 2.74
235 237 1.067212 GCGTCCGGAGATGAATAGTGT 59.933 52.381 3.06 0.00 0.00 3.55
236 238 2.732366 CGTCCGGAGATGAATAGTGTG 58.268 52.381 3.06 0.00 0.00 3.82
237 239 2.099263 CGTCCGGAGATGAATAGTGTGT 59.901 50.000 3.06 0.00 0.00 3.72
238 240 3.428999 CGTCCGGAGATGAATAGTGTGTT 60.429 47.826 3.06 0.00 0.00 3.32
239 241 4.113354 GTCCGGAGATGAATAGTGTGTTC 58.887 47.826 3.06 0.00 0.00 3.18
240 242 3.767131 TCCGGAGATGAATAGTGTGTTCA 59.233 43.478 0.00 0.00 39.65 3.18
241 243 4.405680 TCCGGAGATGAATAGTGTGTTCAT 59.594 41.667 0.00 1.34 46.07 2.57
242 244 5.104941 TCCGGAGATGAATAGTGTGTTCATT 60.105 40.000 0.00 0.00 44.10 2.57
243 245 5.586243 CCGGAGATGAATAGTGTGTTCATTT 59.414 40.000 0.00 0.00 44.10 2.32
244 246 6.094048 CCGGAGATGAATAGTGTGTTCATTTT 59.906 38.462 0.00 0.00 44.10 1.82
245 247 7.279981 CCGGAGATGAATAGTGTGTTCATTTTA 59.720 37.037 0.00 0.00 44.10 1.52
246 248 8.331022 CGGAGATGAATAGTGTGTTCATTTTAG 58.669 37.037 3.22 0.00 44.10 1.85
247 249 8.616076 GGAGATGAATAGTGTGTTCATTTTAGG 58.384 37.037 3.22 0.00 44.10 2.69
248 250 8.511604 AGATGAATAGTGTGTTCATTTTAGGG 57.488 34.615 3.22 0.00 44.10 3.53
249 251 7.557719 AGATGAATAGTGTGTTCATTTTAGGGG 59.442 37.037 3.22 0.00 44.10 4.79
250 252 6.548321 TGAATAGTGTGTTCATTTTAGGGGT 58.452 36.000 0.00 0.00 31.07 4.95
251 253 6.657541 TGAATAGTGTGTTCATTTTAGGGGTC 59.342 38.462 0.00 0.00 31.07 4.46
252 254 4.724279 AGTGTGTTCATTTTAGGGGTCT 57.276 40.909 0.00 0.00 0.00 3.85
253 255 4.398319 AGTGTGTTCATTTTAGGGGTCTG 58.602 43.478 0.00 0.00 0.00 3.51
261 263 5.450453 TCATTTTAGGGGTCTGTGTTGAAA 58.550 37.500 0.00 0.00 0.00 2.69
266 268 1.963515 GGGGTCTGTGTTGAAAATGCT 59.036 47.619 0.00 0.00 0.00 3.79
314 316 6.775142 TGTCTCAATTTTCAACATGGTCCTAA 59.225 34.615 0.00 0.00 0.00 2.69
325 327 7.458397 TCAACATGGTCCTAATAGACACTTTT 58.542 34.615 0.00 0.00 38.59 2.27
347 349 9.393249 CTTTTATGATGTGTTTTCAACGTGTAT 57.607 29.630 0.00 0.00 0.00 2.29
348 350 8.720909 TTTATGATGTGTTTTCAACGTGTATG 57.279 30.769 0.00 0.00 0.00 2.39
352 354 7.866729 TGATGTGTTTTCAACGTGTATGTATT 58.133 30.769 0.00 0.00 0.00 1.89
356 358 8.283992 TGTGTTTTCAACGTGTATGTATTAAGG 58.716 33.333 0.00 0.00 0.00 2.69
380 383 3.606687 ACGTCCAAATAACATCAGACCC 58.393 45.455 0.00 0.00 0.00 4.46
384 387 5.192927 GTCCAAATAACATCAGACCCATCA 58.807 41.667 0.00 0.00 0.00 3.07
389 392 3.814504 AACATCAGACCCATCAAGGTT 57.185 42.857 0.00 0.00 41.42 3.50
405 408 4.654262 TCAAGGTTACCTCAGTTCTCAAGT 59.346 41.667 3.62 0.00 30.89 3.16
437 440 9.290988 TCCAGACATTTAACTAGCAAATTACAA 57.709 29.630 0.00 0.00 0.00 2.41
498 501 6.183309 ACTTCTTTCGAATACAAATCCAGC 57.817 37.500 0.00 0.00 0.00 4.85
512 515 5.207768 CAAATCCAGCGATATAAACTGCAC 58.792 41.667 0.00 0.00 0.00 4.57
605 611 5.910614 ACTTGTAAACCCGGAGTATGTATC 58.089 41.667 0.73 0.00 0.00 2.24
606 612 5.422970 ACTTGTAAACCCGGAGTATGTATCA 59.577 40.000 0.73 0.00 0.00 2.15
608 614 5.663456 TGTAAACCCGGAGTATGTATCAAC 58.337 41.667 0.73 0.00 0.00 3.18
609 615 3.832615 AACCCGGAGTATGTATCAACC 57.167 47.619 0.73 0.00 0.00 3.77
610 616 2.754465 ACCCGGAGTATGTATCAACCA 58.246 47.619 0.73 0.00 0.00 3.67
611 617 2.433239 ACCCGGAGTATGTATCAACCAC 59.567 50.000 0.73 0.00 0.00 4.16
612 618 2.545113 CCCGGAGTATGTATCAACCACG 60.545 54.545 0.73 0.00 0.00 4.94
613 619 2.359848 CCGGAGTATGTATCAACCACGA 59.640 50.000 0.00 0.00 0.00 4.35
614 620 3.005472 CCGGAGTATGTATCAACCACGAT 59.995 47.826 0.00 0.00 0.00 3.73
615 621 3.981416 CGGAGTATGTATCAACCACGATG 59.019 47.826 0.00 0.00 0.00 3.84
616 622 4.261447 CGGAGTATGTATCAACCACGATGA 60.261 45.833 0.00 0.00 0.00 2.92
617 623 5.223382 GGAGTATGTATCAACCACGATGAG 58.777 45.833 0.00 0.00 0.00 2.90
618 624 5.221263 GGAGTATGTATCAACCACGATGAGT 60.221 44.000 0.00 0.00 0.00 3.41
619 625 6.016527 GGAGTATGTATCAACCACGATGAGTA 60.017 42.308 0.00 0.00 0.00 2.59
620 626 7.342769 AGTATGTATCAACCACGATGAGTAA 57.657 36.000 0.00 0.00 0.00 2.24
621 627 7.952671 AGTATGTATCAACCACGATGAGTAAT 58.047 34.615 0.00 0.00 0.00 1.89
622 628 8.421784 AGTATGTATCAACCACGATGAGTAATT 58.578 33.333 0.00 0.00 0.00 1.40
623 629 9.042008 GTATGTATCAACCACGATGAGTAATTT 57.958 33.333 0.00 0.00 0.00 1.82
624 630 7.302350 TGTATCAACCACGATGAGTAATTTG 57.698 36.000 0.00 0.00 0.00 2.32
625 631 5.818136 ATCAACCACGATGAGTAATTTGG 57.182 39.130 0.00 0.00 0.00 3.28
626 632 4.900684 TCAACCACGATGAGTAATTTGGA 58.099 39.130 0.00 0.00 0.00 3.53
627 633 5.309638 TCAACCACGATGAGTAATTTGGAA 58.690 37.500 0.00 0.00 0.00 3.53
628 634 5.180492 TCAACCACGATGAGTAATTTGGAAC 59.820 40.000 0.00 0.00 0.00 3.62
629 635 3.682858 ACCACGATGAGTAATTTGGAACG 59.317 43.478 0.00 0.00 0.00 3.95
630 636 3.063452 CCACGATGAGTAATTTGGAACGG 59.937 47.826 0.00 0.00 0.00 4.44
631 637 3.930229 CACGATGAGTAATTTGGAACGGA 59.070 43.478 0.00 0.00 0.00 4.69
632 638 4.032900 CACGATGAGTAATTTGGAACGGAG 59.967 45.833 0.00 0.00 0.00 4.63
633 639 4.081862 ACGATGAGTAATTTGGAACGGAGA 60.082 41.667 0.00 0.00 0.00 3.71
634 640 4.504461 CGATGAGTAATTTGGAACGGAGAG 59.496 45.833 0.00 0.00 0.00 3.20
635 641 5.661458 GATGAGTAATTTGGAACGGAGAGA 58.339 41.667 0.00 0.00 0.00 3.10
636 642 5.477607 TGAGTAATTTGGAACGGAGAGAA 57.522 39.130 0.00 0.00 0.00 2.87
637 643 6.049955 TGAGTAATTTGGAACGGAGAGAAT 57.950 37.500 0.00 0.00 0.00 2.40
638 644 7.177832 TGAGTAATTTGGAACGGAGAGAATA 57.822 36.000 0.00 0.00 0.00 1.75
639 645 7.792032 TGAGTAATTTGGAACGGAGAGAATAT 58.208 34.615 0.00 0.00 0.00 1.28
640 646 7.710907 TGAGTAATTTGGAACGGAGAGAATATG 59.289 37.037 0.00 0.00 0.00 1.78
641 647 7.565680 AGTAATTTGGAACGGAGAGAATATGT 58.434 34.615 0.00 0.00 0.00 2.29
642 648 8.701895 AGTAATTTGGAACGGAGAGAATATGTA 58.298 33.333 0.00 0.00 0.00 2.29
643 649 8.979574 GTAATTTGGAACGGAGAGAATATGTAG 58.020 37.037 0.00 0.00 0.00 2.74
644 650 6.540438 TTTGGAACGGAGAGAATATGTAGT 57.460 37.500 0.00 0.00 0.00 2.73
645 651 7.649533 TTTGGAACGGAGAGAATATGTAGTA 57.350 36.000 0.00 0.00 0.00 1.82
646 652 7.834881 TTGGAACGGAGAGAATATGTAGTAT 57.165 36.000 0.00 0.00 0.00 2.12
647 653 7.215719 TGGAACGGAGAGAATATGTAGTATG 57.784 40.000 0.00 0.00 0.00 2.39
648 654 6.776116 TGGAACGGAGAGAATATGTAGTATGT 59.224 38.462 0.00 0.00 0.00 2.29
649 655 7.940688 TGGAACGGAGAGAATATGTAGTATGTA 59.059 37.037 0.00 0.00 0.00 2.29
650 656 8.958506 GGAACGGAGAGAATATGTAGTATGTAT 58.041 37.037 0.00 0.00 0.00 2.29
681 687 4.794278 TTCCATAAACGTGCTCAGAGTA 57.206 40.909 0.00 0.00 0.00 2.59
733 739 0.178932 AAGGGAAAGAAACAGGCCCC 60.179 55.000 0.00 0.00 39.68 5.80
734 740 1.074296 AGGGAAAGAAACAGGCCCCT 61.074 55.000 0.00 0.00 39.68 4.79
757 763 1.856014 GCAGAACACGCACAAGTTGTC 60.856 52.381 5.27 0.62 0.00 3.18
925 931 2.510411 CCACCACAGGCACACAGA 59.490 61.111 0.00 0.00 0.00 3.41
969 975 1.439944 ACTTAACCCTACTCCCCCTGT 59.560 52.381 0.00 0.00 0.00 4.00
1068 1077 2.754658 TCCTCCTCGGCGTCTTCC 60.755 66.667 6.85 0.00 0.00 3.46
1072 1081 3.382832 CCTCGGCGTCTTCCACCT 61.383 66.667 6.85 0.00 0.00 4.00
1261 1273 1.254284 CCAGGTGAGCGTCTCCTCTT 61.254 60.000 5.88 0.00 38.23 2.85
1263 1275 0.540830 AGGTGAGCGTCTCCTCTTGT 60.541 55.000 4.73 0.00 35.63 3.16
1403 1423 7.893124 TTTACTGTGTTGTTGGGGTTAATTA 57.107 32.000 0.00 0.00 0.00 1.40
1442 1462 4.339247 CAGAAAGAACCTGTGACCAATTGT 59.661 41.667 4.43 0.00 0.00 2.71
1466 1486 1.826327 CAATGGCTAATTTGGCGACG 58.174 50.000 8.77 0.00 35.06 5.12
1574 1594 9.201127 ACTACTCTAATTCTTTTGGTAAACGTC 57.799 33.333 0.00 0.00 0.00 4.34
1584 1604 5.427036 TTTGGTAAACGTCCAGAAACATC 57.573 39.130 0.00 0.00 36.28 3.06
1615 1658 6.073440 CGGTGGAAATTTCTAGTTCTTTTCGA 60.073 38.462 17.42 0.00 0.00 3.71
1626 1669 9.496873 TTCTAGTTCTTTTCGATGTTCCAATTA 57.503 29.630 0.00 0.00 0.00 1.40
1641 1684 9.675464 ATGTTCCAATTAATTCAAATGATTGCT 57.325 25.926 0.00 0.00 36.45 3.91
2112 2164 5.291614 TGTTGAGAAAATGTTTTTCTGCAGC 59.708 36.000 17.38 15.58 38.73 5.25
2186 2238 6.793203 CAGTGCATTGATTTTTGTTAATGTGC 59.207 34.615 2.46 0.00 34.04 4.57
2264 2319 0.784778 GTGCAGTCTGTCGTACTTGC 59.215 55.000 0.93 0.00 0.00 4.01
2340 2395 2.232750 GCTCGATCAGCGCATCAAT 58.767 52.632 11.47 0.00 38.76 2.57
2499 2557 0.591170 GCTTAGTTTGCGGTTGCTGA 59.409 50.000 0.00 0.00 43.34 4.26
2559 2617 5.048991 GTGGAAAAATAGCCACGAAAGAAGA 60.049 40.000 0.00 0.00 44.39 2.87
2599 2657 3.361786 ACAGTTGGCAAAAGTTGGTAGT 58.638 40.909 0.00 0.00 0.00 2.73
2600 2658 4.528920 ACAGTTGGCAAAAGTTGGTAGTA 58.471 39.130 0.00 0.00 0.00 1.82
2654 2712 7.781548 GCCAAATGCAGAATAAGAATGATTT 57.218 32.000 0.00 0.00 40.77 2.17
2655 2713 7.848491 GCCAAATGCAGAATAAGAATGATTTC 58.152 34.615 0.00 0.00 40.77 2.17
2656 2714 7.709613 GCCAAATGCAGAATAAGAATGATTTCT 59.290 33.333 0.00 0.00 41.13 2.52
2718 2776 3.750130 GCATCCTACTTGGTGCTGATATG 59.250 47.826 0.00 0.00 38.73 1.78
2720 2778 5.511373 GCATCCTACTTGGTGCTGATATGTA 60.511 44.000 0.00 0.00 38.73 2.29
2885 2943 6.252599 TGGTCTAGTAGAAATGCATTCCAT 57.747 37.500 13.38 4.37 38.94 3.41
2953 3012 1.412079 ATGTGCAAGTTGGAAAGCCA 58.588 45.000 4.75 0.00 44.17 4.75
2954 3013 0.746063 TGTGCAAGTTGGAAAGCCAG 59.254 50.000 4.75 0.00 46.91 4.85
2955 3014 0.746659 GTGCAAGTTGGAAAGCCAGT 59.253 50.000 4.75 0.00 46.91 4.00
2992 3051 3.399440 TGCTCATGTGTGTATGTGTGA 57.601 42.857 0.00 0.00 0.00 3.58
3026 3085 1.279496 AGCATGGACTAGGCTTGTCA 58.721 50.000 26.13 14.96 45.64 3.58
3113 3172 8.660295 TTAGTCCTAACTCCTGAATAACAAGA 57.340 34.615 0.00 0.00 36.92 3.02
3259 3318 8.806429 TTGCTTCAGATAGAAATTAACCATGA 57.194 30.769 0.00 0.00 35.40 3.07
3476 3535 3.769844 TGAGGACCCTTCATCTACTCAAC 59.230 47.826 0.00 0.00 33.49 3.18
3511 3570 4.965814 TGTGAGCAAGATATCCCTCAATC 58.034 43.478 15.73 8.56 36.23 2.67
3518 3577 6.100859 AGCAAGATATCCCTCAATCTTCTCAA 59.899 38.462 0.00 0.00 39.79 3.02
3583 3642 1.153168 CACAAGGCCCGATACCTGG 60.153 63.158 0.00 0.00 37.67 4.45
3613 3672 5.182001 AGCAGAATACACACTTGAATTCCAC 59.818 40.000 2.27 0.00 0.00 4.02
3746 3805 2.731451 TCTGAATGAGCAAGTTCGTTCG 59.269 45.455 12.23 8.46 43.07 3.95
3916 3975 5.947228 TTAAAGACTCAAATGCAGGACAG 57.053 39.130 0.00 0.00 0.00 3.51
4001 4060 1.597663 GCCTGTTTCGGATATGGAACG 59.402 52.381 0.00 0.00 0.00 3.95
4083 4142 2.857592 ATGCGCCATTGTCTTTGATC 57.142 45.000 4.18 0.00 0.00 2.92
4216 4277 4.836125 TTCAACTCAGGATTGCTGTTTC 57.164 40.909 5.02 0.00 0.00 2.78
4302 4363 3.627395 TGGTTGATATTCCAGCGTTCT 57.373 42.857 0.00 0.00 0.00 3.01
4431 4492 2.280628 GTTTGGCTCGTATTCTGGGAG 58.719 52.381 0.00 0.00 0.00 4.30
4505 4566 5.426185 ACCGTGGTCTTTATGGTCCTATTTA 59.574 40.000 0.00 0.00 31.94 1.40
4763 4828 0.877071 AGGCAGAACAACAATGAGCG 59.123 50.000 0.00 0.00 0.00 5.03
4924 5010 3.714798 TCGCCTATGTAATTTCTCCCCTT 59.285 43.478 0.00 0.00 0.00 3.95
4955 5042 6.652053 TGTTCAATACATCATCATGAGGACA 58.348 36.000 13.05 0.33 31.79 4.02
4956 5043 7.111466 TGTTCAATACATCATCATGAGGACAA 58.889 34.615 13.05 1.35 31.79 3.18
5013 5102 1.450312 GGACATTGCCCTCGGTGAG 60.450 63.158 0.00 0.00 0.00 3.51
5014 5103 2.045926 ACATTGCCCTCGGTGAGC 60.046 61.111 0.00 0.00 0.00 4.26
5015 5104 2.270205 CATTGCCCTCGGTGAGCT 59.730 61.111 0.00 0.00 0.00 4.09
5029 5118 3.242413 CGGTGAGCTCATTGGTTTATTCG 60.242 47.826 21.47 7.47 0.00 3.34
5048 5137 1.595328 CGTTTGTCGTCACCAACATCA 59.405 47.619 0.00 0.00 29.21 3.07
5107 5196 3.349006 GCATATGCAGCCGTCCCG 61.349 66.667 22.84 0.00 41.59 5.14
5128 5278 0.035598 TTTTCGGCCCGATCAGTTGA 59.964 50.000 6.69 0.00 35.23 3.18
5146 5296 6.908284 TCAGTTGAAAATTGTAAGTGTAACGC 59.092 34.615 0.00 0.00 37.00 4.84
5167 5318 5.933463 ACGCATTGATTTCATTTGGTTGATT 59.067 32.000 0.00 0.00 0.00 2.57
5168 5319 6.128499 ACGCATTGATTTCATTTGGTTGATTG 60.128 34.615 0.00 0.00 0.00 2.67
5333 5485 7.513371 TGTTTGTGTTAATTTCTATCCGGTT 57.487 32.000 0.00 0.00 0.00 4.44
5343 5495 7.461182 AATTTCTATCCGGTTTGATGTTTCA 57.539 32.000 0.00 0.00 0.00 2.69
5352 5504 4.379813 CGGTTTGATGTTTCAGAATCTGGG 60.380 45.833 10.71 0.00 32.27 4.45
5353 5505 4.488879 GTTTGATGTTTCAGAATCTGGGC 58.511 43.478 10.71 1.97 32.27 5.36
5355 5507 3.349927 TGATGTTTCAGAATCTGGGCAG 58.650 45.455 10.71 0.00 31.51 4.85
5360 5512 1.661463 TCAGAATCTGGGCAGTTCCT 58.339 50.000 10.71 0.00 34.39 3.36
5364 5516 3.135348 CAGAATCTGGGCAGTTCCTATGA 59.865 47.826 1.53 0.00 34.39 2.15
5382 5534 2.683968 TGACAGTGGTCTACAAATCGC 58.316 47.619 0.00 0.00 44.61 4.58
5397 5549 4.082571 ACAAATCGCCATCTTGAAAAGGAG 60.083 41.667 0.00 0.00 46.24 3.69
5398 5550 2.859165 TCGCCATCTTGAAAAGGAGT 57.141 45.000 0.00 0.00 46.24 3.85
5399 5551 3.973206 TCGCCATCTTGAAAAGGAGTA 57.027 42.857 0.00 0.00 46.24 2.59
5400 5552 3.596214 TCGCCATCTTGAAAAGGAGTAC 58.404 45.455 0.00 0.00 46.24 2.73
5401 5553 2.348666 CGCCATCTTGAAAAGGAGTACG 59.651 50.000 0.00 0.00 46.24 3.67
5402 5554 3.335579 GCCATCTTGAAAAGGAGTACGT 58.664 45.455 0.00 0.00 46.24 3.57
5403 5555 3.751698 GCCATCTTGAAAAGGAGTACGTT 59.248 43.478 0.00 0.00 46.24 3.99
5404 5556 4.378459 GCCATCTTGAAAAGGAGTACGTTG 60.378 45.833 0.00 0.00 46.24 4.10
5405 5557 4.378459 CCATCTTGAAAAGGAGTACGTTGC 60.378 45.833 0.00 0.00 46.24 4.17
5406 5558 3.799366 TCTTGAAAAGGAGTACGTTGCA 58.201 40.909 0.00 0.00 46.24 4.08
5407 5559 4.385825 TCTTGAAAAGGAGTACGTTGCAT 58.614 39.130 0.00 0.00 46.24 3.96
5408 5560 4.213270 TCTTGAAAAGGAGTACGTTGCATG 59.787 41.667 0.00 0.00 46.24 4.06
5409 5561 3.472652 TGAAAAGGAGTACGTTGCATGT 58.527 40.909 0.00 0.00 0.00 3.21
5410 5562 4.633175 TGAAAAGGAGTACGTTGCATGTA 58.367 39.130 0.00 0.00 0.00 2.29
5411 5563 4.449743 TGAAAAGGAGTACGTTGCATGTAC 59.550 41.667 17.55 17.55 40.09 2.90
5412 5564 8.897738 CTTGAAAAGGAGTACGTTGCATGTACT 61.898 40.741 24.36 24.36 43.10 2.73
5416 5568 3.671008 AGTACGTTGCATGTACTTGGA 57.329 42.857 20.62 4.92 45.80 3.53
5417 5569 4.202245 AGTACGTTGCATGTACTTGGAT 57.798 40.909 20.62 5.07 45.80 3.41
5418 5570 5.333299 AGTACGTTGCATGTACTTGGATA 57.667 39.130 20.62 0.00 45.80 2.59
5419 5571 5.914033 AGTACGTTGCATGTACTTGGATAT 58.086 37.500 20.62 3.96 45.80 1.63
5420 5572 5.753438 AGTACGTTGCATGTACTTGGATATG 59.247 40.000 20.62 6.89 45.80 1.78
5421 5573 4.513442 ACGTTGCATGTACTTGGATATGT 58.487 39.130 10.47 7.39 0.00 2.29
5422 5574 4.332543 ACGTTGCATGTACTTGGATATGTG 59.667 41.667 10.47 0.26 0.00 3.21
5423 5575 4.332543 CGTTGCATGTACTTGGATATGTGT 59.667 41.667 10.47 0.00 0.00 3.72
5424 5576 5.502382 CGTTGCATGTACTTGGATATGTGTC 60.502 44.000 10.47 0.00 0.00 3.67
5425 5577 5.096443 TGCATGTACTTGGATATGTGTCA 57.904 39.130 10.47 0.00 0.00 3.58
5426 5578 5.118286 TGCATGTACTTGGATATGTGTCAG 58.882 41.667 10.47 0.00 0.00 3.51
5427 5579 5.104982 TGCATGTACTTGGATATGTGTCAGA 60.105 40.000 10.47 0.00 0.00 3.27
5428 5580 5.994054 GCATGTACTTGGATATGTGTCAGAT 59.006 40.000 10.47 0.00 0.00 2.90
5429 5581 7.154656 GCATGTACTTGGATATGTGTCAGATA 58.845 38.462 10.47 0.00 0.00 1.98
5430 5582 7.821359 GCATGTACTTGGATATGTGTCAGATAT 59.179 37.037 10.47 2.21 0.00 1.63
5431 5583 9.148104 CATGTACTTGGATATGTGTCAGATATG 57.852 37.037 7.20 0.00 0.00 1.78
5432 5584 7.154656 TGTACTTGGATATGTGTCAGATATGC 58.845 38.462 12.83 12.83 0.00 3.14
5433 5585 5.233225 ACTTGGATATGTGTCAGATATGCG 58.767 41.667 14.24 6.11 29.19 4.73
5434 5586 5.011023 ACTTGGATATGTGTCAGATATGCGA 59.989 40.000 14.24 12.14 29.19 5.10
5435 5587 5.665916 TGGATATGTGTCAGATATGCGAT 57.334 39.130 14.24 0.00 29.19 4.58
5436 5588 6.773976 TGGATATGTGTCAGATATGCGATA 57.226 37.500 14.24 0.00 29.19 2.92
5437 5589 6.564328 TGGATATGTGTCAGATATGCGATAC 58.436 40.000 14.24 0.00 29.19 2.24
5438 5590 5.683302 GGATATGTGTCAGATATGCGATACG 59.317 44.000 7.20 0.00 0.00 3.06
5439 5591 3.282831 TGTGTCAGATATGCGATACGG 57.717 47.619 0.00 0.00 0.00 4.02
5440 5592 2.030274 TGTGTCAGATATGCGATACGGG 60.030 50.000 0.00 0.00 0.00 5.28
5441 5593 1.544246 TGTCAGATATGCGATACGGGG 59.456 52.381 0.00 0.00 0.00 5.73
5442 5594 1.816835 GTCAGATATGCGATACGGGGA 59.183 52.381 0.00 0.00 0.00 4.81
5443 5595 2.427453 GTCAGATATGCGATACGGGGAT 59.573 50.000 0.00 0.00 0.00 3.85
5444 5596 3.630769 GTCAGATATGCGATACGGGGATA 59.369 47.826 0.00 0.00 0.00 2.59
5445 5597 3.630769 TCAGATATGCGATACGGGGATAC 59.369 47.826 0.00 0.00 0.00 2.24
5446 5598 3.380320 CAGATATGCGATACGGGGATACA 59.620 47.826 0.00 0.00 39.74 2.29
5447 5599 3.380637 AGATATGCGATACGGGGATACAC 59.619 47.826 0.00 0.00 39.74 2.90
5448 5600 1.629043 ATGCGATACGGGGATACACT 58.371 50.000 0.00 0.00 38.54 3.55
5449 5601 0.956633 TGCGATACGGGGATACACTC 59.043 55.000 0.00 0.00 38.54 3.51
5450 5602 0.109873 GCGATACGGGGATACACTCG 60.110 60.000 0.00 0.00 38.54 4.18
5451 5603 1.516161 CGATACGGGGATACACTCGA 58.484 55.000 0.00 0.00 38.54 4.04
5452 5604 1.196354 CGATACGGGGATACACTCGAC 59.804 57.143 0.00 0.00 38.54 4.20
5453 5605 2.224606 GATACGGGGATACACTCGACA 58.775 52.381 0.00 0.00 38.54 4.35
5454 5606 1.382522 TACGGGGATACACTCGACAC 58.617 55.000 0.00 0.00 38.54 3.67
5455 5607 0.609957 ACGGGGATACACTCGACACA 60.610 55.000 0.00 0.00 38.54 3.72
5456 5608 0.179145 CGGGGATACACTCGACACAC 60.179 60.000 0.00 0.00 38.54 3.82
5457 5609 0.175073 GGGGATACACTCGACACACC 59.825 60.000 0.00 0.00 36.63 4.16
5458 5610 0.892755 GGGATACACTCGACACACCA 59.107 55.000 0.00 0.00 39.74 4.17
5459 5611 1.274167 GGGATACACTCGACACACCAA 59.726 52.381 0.00 0.00 39.74 3.67
5460 5612 2.093658 GGGATACACTCGACACACCAAT 60.094 50.000 0.00 0.00 39.74 3.16
5461 5613 3.596214 GGATACACTCGACACACCAATT 58.404 45.455 0.00 0.00 0.00 2.32
5462 5614 4.000988 GGATACACTCGACACACCAATTT 58.999 43.478 0.00 0.00 0.00 1.82
5463 5615 4.454504 GGATACACTCGACACACCAATTTT 59.545 41.667 0.00 0.00 0.00 1.82
5464 5616 3.963383 ACACTCGACACACCAATTTTC 57.037 42.857 0.00 0.00 0.00 2.29
5465 5617 3.541632 ACACTCGACACACCAATTTTCT 58.458 40.909 0.00 0.00 0.00 2.52
5466 5618 4.699637 ACACTCGACACACCAATTTTCTA 58.300 39.130 0.00 0.00 0.00 2.10
5467 5619 5.120399 ACACTCGACACACCAATTTTCTAA 58.880 37.500 0.00 0.00 0.00 2.10
5468 5620 5.587043 ACACTCGACACACCAATTTTCTAAA 59.413 36.000 0.00 0.00 0.00 1.85
5469 5621 6.094325 ACACTCGACACACCAATTTTCTAAAA 59.906 34.615 0.00 0.00 0.00 1.52
5470 5622 6.632834 CACTCGACACACCAATTTTCTAAAAG 59.367 38.462 0.00 0.00 0.00 2.27
5471 5623 5.516090 TCGACACACCAATTTTCTAAAAGC 58.484 37.500 0.00 0.00 0.00 3.51
5472 5624 5.298276 TCGACACACCAATTTTCTAAAAGCT 59.702 36.000 0.00 0.00 0.00 3.74
5473 5625 6.483974 TCGACACACCAATTTTCTAAAAGCTA 59.516 34.615 0.00 0.00 0.00 3.32
5474 5626 6.797033 CGACACACCAATTTTCTAAAAGCTAG 59.203 38.462 0.00 0.00 0.00 3.42
5475 5627 6.981722 ACACACCAATTTTCTAAAAGCTAGG 58.018 36.000 0.00 0.00 0.00 3.02
5476 5628 6.015434 ACACACCAATTTTCTAAAAGCTAGGG 60.015 38.462 0.00 0.00 0.00 3.53
5477 5629 6.015434 CACACCAATTTTCTAAAAGCTAGGGT 60.015 38.462 0.00 0.00 0.00 4.34
5478 5630 7.175990 CACACCAATTTTCTAAAAGCTAGGGTA 59.824 37.037 0.00 0.00 0.00 3.69
5479 5631 7.176165 ACACCAATTTTCTAAAAGCTAGGGTAC 59.824 37.037 0.00 0.00 0.00 3.34
5480 5632 7.175990 CACCAATTTTCTAAAAGCTAGGGTACA 59.824 37.037 0.00 0.00 0.00 2.90
5481 5633 7.893833 ACCAATTTTCTAAAAGCTAGGGTACAT 59.106 33.333 0.00 0.00 0.00 2.29
5482 5634 8.190784 CCAATTTTCTAAAAGCTAGGGTACATG 58.809 37.037 0.00 0.00 0.00 3.21
5483 5635 8.956426 CAATTTTCTAAAAGCTAGGGTACATGA 58.044 33.333 0.00 0.00 0.00 3.07
5484 5636 9.700831 AATTTTCTAAAAGCTAGGGTACATGAT 57.299 29.630 0.00 0.00 0.00 2.45
5486 5638 9.609346 TTTTCTAAAAGCTAGGGTACATGATAC 57.391 33.333 0.00 0.00 0.00 2.24
5487 5639 7.907841 TCTAAAAGCTAGGGTACATGATACA 57.092 36.000 0.00 0.00 0.00 2.29
5488 5640 8.492415 TCTAAAAGCTAGGGTACATGATACAT 57.508 34.615 0.00 0.00 0.00 2.29
5489 5641 8.934697 TCTAAAAGCTAGGGTACATGATACATT 58.065 33.333 0.00 0.00 0.00 2.71
5490 5642 9.561069 CTAAAAGCTAGGGTACATGATACATTT 57.439 33.333 0.00 0.00 0.00 2.32
5549 5701 6.729690 AAAAAGAGGAACATCCATGTCAAA 57.270 33.333 0.00 0.00 40.80 2.69
5550 5702 5.972107 AAAGAGGAACATCCATGTCAAAG 57.028 39.130 0.00 0.00 40.80 2.77
5551 5703 3.350833 AGAGGAACATCCATGTCAAAGC 58.649 45.455 0.00 0.00 40.80 3.51
5552 5704 3.084039 GAGGAACATCCATGTCAAAGCA 58.916 45.455 0.00 0.00 40.80 3.91
5553 5705 3.698040 GAGGAACATCCATGTCAAAGCAT 59.302 43.478 0.00 0.00 40.80 3.79
5554 5706 3.446161 AGGAACATCCATGTCAAAGCATG 59.554 43.478 0.00 0.00 44.18 4.06
5555 5707 2.953466 ACATCCATGTCAAAGCATGC 57.047 45.000 10.51 10.51 43.46 4.06
5556 5708 1.133598 ACATCCATGTCAAAGCATGCG 59.866 47.619 13.01 0.00 43.46 4.73
5557 5709 1.133598 CATCCATGTCAAAGCATGCGT 59.866 47.619 13.01 6.07 43.46 5.24
5558 5710 0.804364 TCCATGTCAAAGCATGCGTC 59.196 50.000 13.01 0.00 43.46 5.19
5559 5711 0.522626 CCATGTCAAAGCATGCGTCA 59.477 50.000 13.01 3.86 43.46 4.35
5560 5712 1.068402 CCATGTCAAAGCATGCGTCAA 60.068 47.619 13.01 0.00 43.46 3.18
5561 5713 2.416296 CCATGTCAAAGCATGCGTCAAT 60.416 45.455 13.01 0.00 43.46 2.57
5562 5714 3.181498 CCATGTCAAAGCATGCGTCAATA 60.181 43.478 13.01 0.00 43.46 1.90
5563 5715 3.745332 TGTCAAAGCATGCGTCAATAG 57.255 42.857 13.01 0.00 0.00 1.73
5564 5716 2.419673 TGTCAAAGCATGCGTCAATAGG 59.580 45.455 13.01 0.00 0.00 2.57
5565 5717 2.677836 GTCAAAGCATGCGTCAATAGGA 59.322 45.455 13.01 0.08 0.00 2.94
5566 5718 2.677836 TCAAAGCATGCGTCAATAGGAC 59.322 45.455 13.01 0.00 43.36 3.85
5567 5719 2.679837 CAAAGCATGCGTCAATAGGACT 59.320 45.455 13.01 0.00 44.68 3.85
5568 5720 3.819564 AAGCATGCGTCAATAGGACTA 57.180 42.857 13.01 0.00 44.68 2.59
5569 5721 3.819564 AGCATGCGTCAATAGGACTAA 57.180 42.857 13.01 0.00 44.68 2.24
5570 5722 3.458189 AGCATGCGTCAATAGGACTAAC 58.542 45.455 13.01 0.00 44.68 2.34
5571 5723 2.544267 GCATGCGTCAATAGGACTAACC 59.456 50.000 0.00 0.00 44.68 2.85
5572 5724 2.973694 TGCGTCAATAGGACTAACCC 57.026 50.000 0.00 0.00 44.68 4.11
5573 5725 2.463752 TGCGTCAATAGGACTAACCCT 58.536 47.619 0.00 0.00 44.68 4.34
5574 5726 2.429610 TGCGTCAATAGGACTAACCCTC 59.570 50.000 0.00 0.00 44.68 4.30
5575 5727 2.223994 GCGTCAATAGGACTAACCCTCC 60.224 54.545 0.00 0.00 44.68 4.30
5576 5728 3.297736 CGTCAATAGGACTAACCCTCCT 58.702 50.000 0.00 0.00 44.68 3.69
5577 5729 3.705072 CGTCAATAGGACTAACCCTCCTT 59.295 47.826 0.00 0.00 44.68 3.36
5578 5730 4.161754 CGTCAATAGGACTAACCCTCCTTT 59.838 45.833 0.00 0.00 44.68 3.11
5579 5731 5.338137 CGTCAATAGGACTAACCCTCCTTTT 60.338 44.000 0.00 0.00 44.68 2.27
5580 5732 6.482524 GTCAATAGGACTAACCCTCCTTTTT 58.517 40.000 0.00 0.00 43.46 1.94
5599 5751 3.518634 TTTTTCTTGCACTTGGTCCAC 57.481 42.857 0.00 0.00 0.00 4.02
5600 5752 2.435372 TTTCTTGCACTTGGTCCACT 57.565 45.000 0.00 0.00 0.00 4.00
5601 5753 2.435372 TTCTTGCACTTGGTCCACTT 57.565 45.000 0.00 0.00 0.00 3.16
5602 5754 1.967319 TCTTGCACTTGGTCCACTTC 58.033 50.000 0.00 0.00 0.00 3.01
5603 5755 0.954452 CTTGCACTTGGTCCACTTCC 59.046 55.000 0.00 0.00 0.00 3.46
5604 5756 0.257328 TTGCACTTGGTCCACTTCCA 59.743 50.000 0.00 0.00 0.00 3.53
5605 5757 0.478072 TGCACTTGGTCCACTTCCAT 59.522 50.000 0.00 0.00 34.75 3.41
5606 5758 1.168714 GCACTTGGTCCACTTCCATC 58.831 55.000 0.00 0.00 34.75 3.51
5607 5759 1.545428 GCACTTGGTCCACTTCCATCA 60.545 52.381 0.00 0.00 34.75 3.07
5608 5760 2.430465 CACTTGGTCCACTTCCATCAG 58.570 52.381 0.00 0.00 34.75 2.90
5609 5761 2.057922 ACTTGGTCCACTTCCATCAGT 58.942 47.619 0.00 0.00 34.75 3.41
5610 5762 2.443255 ACTTGGTCCACTTCCATCAGTT 59.557 45.455 0.00 0.00 34.75 3.16
5611 5763 3.117512 ACTTGGTCCACTTCCATCAGTTT 60.118 43.478 0.00 0.00 34.75 2.66
5612 5764 3.593442 TGGTCCACTTCCATCAGTTTT 57.407 42.857 0.00 0.00 0.00 2.43
5613 5765 3.909732 TGGTCCACTTCCATCAGTTTTT 58.090 40.909 0.00 0.00 0.00 1.94
5633 5785 3.732048 TTTTAGGGATGGTCCACTTCC 57.268 47.619 3.15 3.15 38.64 3.46
5634 5786 2.352561 TTAGGGATGGTCCACTTCCA 57.647 50.000 12.68 0.00 43.45 3.53
5635 5787 2.587060 TAGGGATGGTCCACTTCCAT 57.413 50.000 12.68 8.58 46.78 3.41
5641 5793 2.566833 TGGTCCACTTCCATCAGTTG 57.433 50.000 0.00 0.00 0.00 3.16
5643 5795 1.168714 GTCCACTTCCATCAGTTGGC 58.831 55.000 0.00 0.00 46.01 4.52
5644 5796 0.770499 TCCACTTCCATCAGTTGGCA 59.230 50.000 0.00 0.00 46.01 4.92
5645 5797 1.171308 CCACTTCCATCAGTTGGCAG 58.829 55.000 0.00 0.00 46.01 4.85
5648 5800 1.171308 CTTCCATCAGTTGGCAGTGG 58.829 55.000 0.00 0.00 46.01 4.00
5649 5801 0.251297 TTCCATCAGTTGGCAGTGGG 60.251 55.000 0.00 0.00 46.01 4.61
5650 5802 1.133181 TCCATCAGTTGGCAGTGGGA 61.133 55.000 0.00 0.00 46.01 4.37
5651 5803 0.033796 CCATCAGTTGGCAGTGGGAT 60.034 55.000 0.00 0.00 39.09 3.85
5652 5804 1.617804 CCATCAGTTGGCAGTGGGATT 60.618 52.381 0.00 0.00 39.09 3.01
5653 5805 2.173519 CATCAGTTGGCAGTGGGATTT 58.826 47.619 0.00 0.00 0.00 2.17
5654 5806 2.380064 TCAGTTGGCAGTGGGATTTT 57.620 45.000 0.00 0.00 0.00 1.82
5655 5807 2.238521 TCAGTTGGCAGTGGGATTTTC 58.761 47.619 0.00 0.00 0.00 2.29
5656 5808 1.273327 CAGTTGGCAGTGGGATTTTCC 59.727 52.381 0.00 0.00 35.23 3.13
5657 5809 1.147817 AGTTGGCAGTGGGATTTTCCT 59.852 47.619 0.00 0.00 36.57 3.36
5658 5810 2.378547 AGTTGGCAGTGGGATTTTCCTA 59.621 45.455 0.00 0.00 36.57 2.94
5659 5811 2.755103 GTTGGCAGTGGGATTTTCCTAG 59.245 50.000 0.00 0.00 36.57 3.02
5660 5812 1.284785 TGGCAGTGGGATTTTCCTAGG 59.715 52.381 0.82 0.82 36.57 3.02
5661 5813 1.285078 GGCAGTGGGATTTTCCTAGGT 59.715 52.381 9.08 0.00 36.57 3.08
5662 5814 2.291605 GGCAGTGGGATTTTCCTAGGTT 60.292 50.000 9.08 0.00 36.57 3.50
5663 5815 3.431415 GCAGTGGGATTTTCCTAGGTTT 58.569 45.455 9.08 0.00 36.57 3.27
5664 5816 3.193479 GCAGTGGGATTTTCCTAGGTTTG 59.807 47.826 9.08 0.00 36.57 2.93
5665 5817 4.407365 CAGTGGGATTTTCCTAGGTTTGT 58.593 43.478 9.08 0.00 36.57 2.83
5666 5818 4.832823 CAGTGGGATTTTCCTAGGTTTGTT 59.167 41.667 9.08 0.00 36.57 2.83
5667 5819 4.832823 AGTGGGATTTTCCTAGGTTTGTTG 59.167 41.667 9.08 0.00 36.57 3.33
5668 5820 3.576550 TGGGATTTTCCTAGGTTTGTTGC 59.423 43.478 9.08 0.00 36.57 4.17
5669 5821 3.832490 GGGATTTTCCTAGGTTTGTTGCT 59.168 43.478 9.08 0.00 36.57 3.91
5670 5822 4.082190 GGGATTTTCCTAGGTTTGTTGCTC 60.082 45.833 9.08 0.00 36.57 4.26
5671 5823 4.767409 GGATTTTCCTAGGTTTGTTGCTCT 59.233 41.667 9.08 0.00 32.53 4.09
5672 5824 5.335976 GGATTTTCCTAGGTTTGTTGCTCTG 60.336 44.000 9.08 0.00 32.53 3.35
5673 5825 3.857157 TTCCTAGGTTTGTTGCTCTGT 57.143 42.857 9.08 0.00 0.00 3.41
5674 5826 3.402628 TCCTAGGTTTGTTGCTCTGTC 57.597 47.619 9.08 0.00 0.00 3.51
5675 5827 2.972713 TCCTAGGTTTGTTGCTCTGTCT 59.027 45.455 9.08 0.00 0.00 3.41
5676 5828 3.006967 TCCTAGGTTTGTTGCTCTGTCTC 59.993 47.826 9.08 0.00 0.00 3.36
5677 5829 3.244215 CCTAGGTTTGTTGCTCTGTCTCA 60.244 47.826 0.00 0.00 0.00 3.27
5678 5830 3.281727 AGGTTTGTTGCTCTGTCTCAA 57.718 42.857 0.00 0.00 0.00 3.02
5679 5831 3.825328 AGGTTTGTTGCTCTGTCTCAAT 58.175 40.909 0.00 0.00 0.00 2.57
5680 5832 3.817647 AGGTTTGTTGCTCTGTCTCAATC 59.182 43.478 0.00 0.00 0.00 2.67
5681 5833 3.565482 GGTTTGTTGCTCTGTCTCAATCA 59.435 43.478 0.00 0.00 0.00 2.57
5682 5834 4.036734 GGTTTGTTGCTCTGTCTCAATCAA 59.963 41.667 0.00 0.00 0.00 2.57
5683 5835 5.278660 GGTTTGTTGCTCTGTCTCAATCAAT 60.279 40.000 0.00 0.00 0.00 2.57
5684 5836 5.366829 TTGTTGCTCTGTCTCAATCAATG 57.633 39.130 0.00 0.00 0.00 2.82
5685 5837 3.189910 TGTTGCTCTGTCTCAATCAATGC 59.810 43.478 0.00 0.00 0.00 3.56
5686 5838 3.062122 TGCTCTGTCTCAATCAATGCA 57.938 42.857 0.00 0.00 0.00 3.96
5687 5839 3.617284 TGCTCTGTCTCAATCAATGCAT 58.383 40.909 0.00 0.00 0.00 3.96
5688 5840 3.626217 TGCTCTGTCTCAATCAATGCATC 59.374 43.478 0.00 0.00 0.00 3.91
5689 5841 3.303197 GCTCTGTCTCAATCAATGCATCG 60.303 47.826 0.00 0.00 0.00 3.84
5690 5842 4.117685 CTCTGTCTCAATCAATGCATCGA 58.882 43.478 0.00 0.00 0.00 3.59
5691 5843 3.867493 TCTGTCTCAATCAATGCATCGAC 59.133 43.478 0.00 0.00 0.00 4.20
5692 5844 3.865446 TGTCTCAATCAATGCATCGACT 58.135 40.909 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 7.716123 TCTCATCCGTTCAACTAAAACCTAAAA 59.284 33.333 0.00 0.00 0.00 1.52
37 38 7.218614 TCTCATCCGTTCAACTAAAACCTAAA 58.781 34.615 0.00 0.00 0.00 1.85
67 68 8.169977 TCTGCCAGAATTTATATGAATTGGAC 57.830 34.615 9.97 4.92 29.75 4.02
90 91 4.247267 TCGTTCAACGGACATAACTTCT 57.753 40.909 10.69 0.00 42.81 2.85
109 111 2.610219 TGCAAACATGACGGAATTCG 57.390 45.000 0.00 0.00 45.88 3.34
117 119 4.445385 GGACACAATTCTTGCAAACATGAC 59.555 41.667 0.00 0.00 30.28 3.06
125 127 3.145286 TCATTCGGACACAATTCTTGCA 58.855 40.909 0.00 0.00 0.00 4.08
126 128 3.189287 ACTCATTCGGACACAATTCTTGC 59.811 43.478 0.00 0.00 0.00 4.01
128 130 5.530915 TCAAACTCATTCGGACACAATTCTT 59.469 36.000 0.00 0.00 0.00 2.52
129 131 5.063204 TCAAACTCATTCGGACACAATTCT 58.937 37.500 0.00 0.00 0.00 2.40
158 160 3.182590 TTGCTGCAACTCTCCGCCT 62.183 57.895 11.69 0.00 0.00 5.52
161 163 2.866028 GCTTGCTGCAACTCTCCG 59.134 61.111 11.69 1.68 42.31 4.63
167 169 1.005294 CATCCAACGCTTGCTGCAAC 61.005 55.000 11.69 7.82 43.06 4.17
172 174 3.064324 GCCCATCCAACGCTTGCT 61.064 61.111 0.00 0.00 0.00 3.91
178 180 4.473520 AGAGCCGCCCATCCAACG 62.474 66.667 0.00 0.00 0.00 4.10
188 190 2.811317 CAGTGGTTCGAGAGCCGC 60.811 66.667 10.89 10.89 41.71 6.53
194 196 0.673985 TCTGTGGACAGTGGTTCGAG 59.326 55.000 6.68 0.00 44.12 4.04
195 197 1.000843 CATCTGTGGACAGTGGTTCGA 59.999 52.381 6.68 0.00 44.12 3.71
214 216 1.067060 CACTATTCATCTCCGGACGCA 59.933 52.381 0.00 0.00 0.00 5.24
222 224 8.616076 CCCTAAAATGAACACACTATTCATCTC 58.384 37.037 0.97 0.00 44.24 2.75
223 225 7.557719 CCCCTAAAATGAACACACTATTCATCT 59.442 37.037 0.97 0.00 44.24 2.90
226 228 6.548321 ACCCCTAAAATGAACACACTATTCA 58.452 36.000 0.00 0.00 40.25 2.57
227 229 6.884836 AGACCCCTAAAATGAACACACTATTC 59.115 38.462 0.00 0.00 0.00 1.75
230 232 5.072600 ACAGACCCCTAAAATGAACACACTA 59.927 40.000 0.00 0.00 0.00 2.74
231 233 4.141251 ACAGACCCCTAAAATGAACACACT 60.141 41.667 0.00 0.00 0.00 3.55
232 234 4.023193 CACAGACCCCTAAAATGAACACAC 60.023 45.833 0.00 0.00 0.00 3.82
233 235 4.141287 CACAGACCCCTAAAATGAACACA 58.859 43.478 0.00 0.00 0.00 3.72
234 236 4.142038 ACACAGACCCCTAAAATGAACAC 58.858 43.478 0.00 0.00 0.00 3.32
235 237 4.447138 ACACAGACCCCTAAAATGAACA 57.553 40.909 0.00 0.00 0.00 3.18
236 238 4.825085 TCAACACAGACCCCTAAAATGAAC 59.175 41.667 0.00 0.00 0.00 3.18
237 239 5.055265 TCAACACAGACCCCTAAAATGAA 57.945 39.130 0.00 0.00 0.00 2.57
238 240 4.715534 TCAACACAGACCCCTAAAATGA 57.284 40.909 0.00 0.00 0.00 2.57
239 241 5.782893 TTTCAACACAGACCCCTAAAATG 57.217 39.130 0.00 0.00 0.00 2.32
240 242 6.741240 GCATTTTCAACACAGACCCCTAAAAT 60.741 38.462 0.00 0.00 0.00 1.82
241 243 5.452636 GCATTTTCAACACAGACCCCTAAAA 60.453 40.000 0.00 0.00 0.00 1.52
242 244 4.038642 GCATTTTCAACACAGACCCCTAAA 59.961 41.667 0.00 0.00 0.00 1.85
243 245 3.572255 GCATTTTCAACACAGACCCCTAA 59.428 43.478 0.00 0.00 0.00 2.69
244 246 3.153919 GCATTTTCAACACAGACCCCTA 58.846 45.455 0.00 0.00 0.00 3.53
245 247 1.963515 GCATTTTCAACACAGACCCCT 59.036 47.619 0.00 0.00 0.00 4.79
246 248 1.963515 AGCATTTTCAACACAGACCCC 59.036 47.619 0.00 0.00 0.00 4.95
247 249 2.887152 AGAGCATTTTCAACACAGACCC 59.113 45.455 0.00 0.00 0.00 4.46
248 250 4.574599 AAGAGCATTTTCAACACAGACC 57.425 40.909 0.00 0.00 0.00 3.85
249 251 8.034058 AGTATAAGAGCATTTTCAACACAGAC 57.966 34.615 0.00 0.00 0.00 3.51
250 252 8.506437 CAAGTATAAGAGCATTTTCAACACAGA 58.494 33.333 0.00 0.00 0.00 3.41
251 253 7.272084 GCAAGTATAAGAGCATTTTCAACACAG 59.728 37.037 0.00 0.00 0.00 3.66
252 254 7.083858 GCAAGTATAAGAGCATTTTCAACACA 58.916 34.615 0.00 0.00 0.00 3.72
253 255 7.061094 GTGCAAGTATAAGAGCATTTTCAACAC 59.939 37.037 0.00 0.00 39.43 3.32
261 263 6.889198 TCCTAAGTGCAAGTATAAGAGCATT 58.111 36.000 0.00 0.00 39.43 3.56
266 268 8.079211 ACAAGATCCTAAGTGCAAGTATAAGA 57.921 34.615 0.00 0.00 0.00 2.10
352 354 7.924412 GTCTGATGTTATTTGGACGTATCCTTA 59.076 37.037 0.00 0.00 46.43 2.69
356 358 5.465724 GGGTCTGATGTTATTTGGACGTATC 59.534 44.000 0.00 0.00 0.00 2.24
380 383 5.152623 TGAGAACTGAGGTAACCTTGATG 57.847 43.478 0.00 0.00 31.76 3.07
384 387 6.936968 ATACTTGAGAACTGAGGTAACCTT 57.063 37.500 0.00 0.00 31.76 3.50
389 392 8.603898 TGGATAAATACTTGAGAACTGAGGTA 57.396 34.615 0.00 0.00 0.00 3.08
483 486 7.952101 CAGTTTATATCGCTGGATTTGTATTCG 59.048 37.037 0.00 0.00 34.00 3.34
552 555 7.309770 ACCCTTGCATTTAGGTCAAAATTTA 57.690 32.000 2.31 0.00 0.00 1.40
605 611 5.390613 GTTCCAAATTACTCATCGTGGTTG 58.609 41.667 0.00 0.00 0.00 3.77
606 612 4.153475 CGTTCCAAATTACTCATCGTGGTT 59.847 41.667 0.00 0.00 0.00 3.67
608 614 3.063452 CCGTTCCAAATTACTCATCGTGG 59.937 47.826 0.00 0.00 0.00 4.94
609 615 3.930229 TCCGTTCCAAATTACTCATCGTG 59.070 43.478 0.00 0.00 0.00 4.35
610 616 4.081862 TCTCCGTTCCAAATTACTCATCGT 60.082 41.667 0.00 0.00 0.00 3.73
611 617 4.430007 TCTCCGTTCCAAATTACTCATCG 58.570 43.478 0.00 0.00 0.00 3.84
612 618 5.661458 TCTCTCCGTTCCAAATTACTCATC 58.339 41.667 0.00 0.00 0.00 2.92
613 619 5.677319 TCTCTCCGTTCCAAATTACTCAT 57.323 39.130 0.00 0.00 0.00 2.90
614 620 5.477607 TTCTCTCCGTTCCAAATTACTCA 57.522 39.130 0.00 0.00 0.00 3.41
615 621 7.711339 ACATATTCTCTCCGTTCCAAATTACTC 59.289 37.037 0.00 0.00 0.00 2.59
616 622 7.565680 ACATATTCTCTCCGTTCCAAATTACT 58.434 34.615 0.00 0.00 0.00 2.24
617 623 7.787725 ACATATTCTCTCCGTTCCAAATTAC 57.212 36.000 0.00 0.00 0.00 1.89
618 624 8.701895 ACTACATATTCTCTCCGTTCCAAATTA 58.298 33.333 0.00 0.00 0.00 1.40
619 625 7.565680 ACTACATATTCTCTCCGTTCCAAATT 58.434 34.615 0.00 0.00 0.00 1.82
620 626 7.125792 ACTACATATTCTCTCCGTTCCAAAT 57.874 36.000 0.00 0.00 0.00 2.32
621 627 6.540438 ACTACATATTCTCTCCGTTCCAAA 57.460 37.500 0.00 0.00 0.00 3.28
622 628 7.287005 ACATACTACATATTCTCTCCGTTCCAA 59.713 37.037 0.00 0.00 0.00 3.53
623 629 6.776116 ACATACTACATATTCTCTCCGTTCCA 59.224 38.462 0.00 0.00 0.00 3.53
624 630 7.216973 ACATACTACATATTCTCTCCGTTCC 57.783 40.000 0.00 0.00 0.00 3.62
625 631 9.776158 CATACATACTACATATTCTCTCCGTTC 57.224 37.037 0.00 0.00 0.00 3.95
626 632 9.298250 ACATACATACTACATATTCTCTCCGTT 57.702 33.333 0.00 0.00 0.00 4.44
627 633 8.865420 ACATACATACTACATATTCTCTCCGT 57.135 34.615 0.00 0.00 0.00 4.69
645 651 9.005777 ACGTTTATGGAAAAGTTGTACATACAT 57.994 29.630 0.00 0.00 34.11 2.29
646 652 8.283992 CACGTTTATGGAAAAGTTGTACATACA 58.716 33.333 0.00 0.00 35.41 2.29
647 653 7.269724 GCACGTTTATGGAAAAGTTGTACATAC 59.730 37.037 0.00 0.00 35.41 2.39
648 654 7.173562 AGCACGTTTATGGAAAAGTTGTACATA 59.826 33.333 0.00 0.00 35.41 2.29
649 655 6.016610 AGCACGTTTATGGAAAAGTTGTACAT 60.017 34.615 0.00 0.00 35.41 2.29
650 656 5.297278 AGCACGTTTATGGAAAAGTTGTACA 59.703 36.000 0.00 0.00 35.41 2.90
661 667 4.014406 TCTACTCTGAGCACGTTTATGGA 58.986 43.478 4.19 0.00 0.00 3.41
681 687 6.614657 TCCTTCTTTTCTTCCCAAATTCTCT 58.385 36.000 0.00 0.00 0.00 3.10
733 739 0.234106 CTTGTGCGTGTTCTGCTCAG 59.766 55.000 0.00 0.00 37.18 3.35
734 740 0.461870 ACTTGTGCGTGTTCTGCTCA 60.462 50.000 0.00 0.00 34.38 4.26
735 741 0.657840 AACTTGTGCGTGTTCTGCTC 59.342 50.000 0.00 0.00 0.00 4.26
831 837 1.216710 GGAGGGCAAGTGAGTCGAG 59.783 63.158 0.00 0.00 0.00 4.04
835 841 2.936032 GGGGGAGGGCAAGTGAGT 60.936 66.667 0.00 0.00 0.00 3.41
856 862 4.318974 GGCGCGTCACTTTTAAGTTCTTAA 60.319 41.667 5.47 1.47 37.08 1.85
857 863 3.184986 GGCGCGTCACTTTTAAGTTCTTA 59.815 43.478 5.47 0.00 37.08 2.10
858 864 2.032290 GGCGCGTCACTTTTAAGTTCTT 60.032 45.455 5.47 0.00 37.08 2.52
859 865 1.529865 GGCGCGTCACTTTTAAGTTCT 59.470 47.619 5.47 0.00 37.08 3.01
860 866 1.399343 GGGCGCGTCACTTTTAAGTTC 60.399 52.381 14.93 0.00 37.08 3.01
861 867 0.589708 GGGCGCGTCACTTTTAAGTT 59.410 50.000 14.93 0.00 37.08 2.66
862 868 0.533308 TGGGCGCGTCACTTTTAAGT 60.533 50.000 14.93 0.00 40.60 2.24
863 869 0.110373 GTGGGCGCGTCACTTTTAAG 60.110 55.000 14.93 0.00 32.78 1.85
910 916 0.546122 TTCTTCTGTGTGCCTGTGGT 59.454 50.000 0.00 0.00 0.00 4.16
1065 1074 3.706373 GAGGCCGAGCAGGTGGAA 61.706 66.667 0.00 0.00 43.70 3.53
1273 1285 3.304928 CCAATCAAGGAACAACAGCAGAC 60.305 47.826 0.00 0.00 0.00 3.51
1330 1342 1.577328 AACAATCCGCAGAACCGCAG 61.577 55.000 0.00 0.00 0.00 5.18
1403 1423 2.130272 TCTGAGTCTACGGAGCACAT 57.870 50.000 0.00 0.00 0.00 3.21
1442 1462 2.035704 CGCCAAATTAGCCATTGCCATA 59.964 45.455 0.00 0.00 38.69 2.74
1584 1604 7.042335 AGAACTAGAAATTTCCACCGTATCAG 58.958 38.462 14.61 1.83 0.00 2.90
1615 1658 9.675464 AGCAATCATTTGAATTAATTGGAACAT 57.325 25.926 5.17 0.00 34.18 2.71
1626 1669 6.050432 ACACAACACAGCAATCATTTGAATT 58.950 32.000 0.00 0.00 34.60 2.17
1641 1684 4.156739 TGAACTGCACAAATACACAACACA 59.843 37.500 0.00 0.00 0.00 3.72
1887 1934 6.364568 AATTCAGGCCTTCTTTAGCATTTT 57.635 33.333 0.00 0.00 0.00 1.82
2112 2164 2.183478 TGGTAACACTCCACTGCATG 57.817 50.000 0.00 0.00 46.17 4.06
2264 2319 1.011333 ACACGTGAACCTCAAAACCG 58.989 50.000 25.01 0.00 0.00 4.44
2307 2362 1.165907 CGAGCAGCACCCTGACAAAA 61.166 55.000 0.00 0.00 41.77 2.44
2313 2368 1.521010 CTGATCGAGCAGCACCCTG 60.521 63.158 18.91 0.00 42.13 4.45
2526 2584 6.524101 TGGCTATTTTTCCACAATAGGTTC 57.476 37.500 0.00 0.00 35.53 3.62
2583 2641 4.705507 TGTTTGTACTACCAACTTTTGCCA 59.294 37.500 5.12 0.00 0.00 4.92
2600 2658 9.450807 GCGCTAGATTATGATAATTTTGTTTGT 57.549 29.630 0.00 0.00 0.00 2.83
2756 2814 3.055819 GTCAGTGGGCTCAATCAACTAGA 60.056 47.826 0.00 0.00 0.00 2.43
2928 2986 5.120674 GGCTTTCCAACTTGCACATAATTTC 59.879 40.000 0.00 0.00 0.00 2.17
2939 2997 5.705441 TGATTACTACTGGCTTTCCAACTTG 59.295 40.000 0.00 0.00 42.91 3.16
2940 2998 5.876357 TGATTACTACTGGCTTTCCAACTT 58.124 37.500 0.00 0.00 42.91 2.66
2953 3012 5.069648 TGAGCATTAGCAGCTGATTACTACT 59.930 40.000 20.43 5.89 43.58 2.57
2954 3013 5.292765 TGAGCATTAGCAGCTGATTACTAC 58.707 41.667 20.43 0.38 43.58 2.73
2955 3014 5.535753 TGAGCATTAGCAGCTGATTACTA 57.464 39.130 20.43 6.28 43.58 1.82
2992 3051 3.079578 CCATGCTTCTGAGAACACACAT 58.920 45.455 0.00 0.00 0.00 3.21
3058 3117 7.399634 TGTAACTAGTAAATTTCTTCCCCCAG 58.600 38.462 0.00 0.00 0.00 4.45
3060 3119 8.818622 ATTGTAACTAGTAAATTTCTTCCCCC 57.181 34.615 0.00 0.00 0.00 5.40
3113 3172 7.607991 CAGAACCTATAGTGGAAAAGATGTGTT 59.392 37.037 0.00 0.00 0.00 3.32
3259 3318 6.265196 TGCATTCAAATTCAGTGTTAAGGACT 59.735 34.615 0.00 0.00 0.00 3.85
3511 3570 5.121811 CAGGATTACCATCACCTTGAGAAG 58.878 45.833 0.00 0.00 38.94 2.85
3518 3577 1.212935 GCCACAGGATTACCATCACCT 59.787 52.381 0.00 0.00 38.94 4.00
3583 3642 3.045601 AGTGTGTATTCTGCTGGACAC 57.954 47.619 13.53 13.53 42.04 3.67
3770 3829 4.207165 GCAACTTCCTCATATTAAGCCCA 58.793 43.478 0.00 0.00 0.00 5.36
4216 4277 4.393990 TGCTGCAATCAAGTGACATCTAAG 59.606 41.667 0.00 0.00 0.00 2.18
4302 4363 0.184692 TGTTGGGTCCTGTCATTGCA 59.815 50.000 0.00 0.00 0.00 4.08
4311 4372 2.225242 TGTTATTGGCATGTTGGGTCCT 60.225 45.455 0.00 0.00 0.00 3.85
4431 4492 1.035139 AATGGATGGCGCAAAGGATC 58.965 50.000 10.83 1.83 0.00 3.36
4505 4566 0.603707 CTTGGGTCTGTGCGTCACAT 60.604 55.000 12.03 0.00 43.71 3.21
4763 4828 4.120331 GTCCAACCTGGCGCATGC 62.120 66.667 10.83 7.91 37.47 4.06
4980 5069 0.756294 TGTCCACACAACATCGGAGT 59.244 50.000 0.00 0.00 0.00 3.85
5013 5102 4.553429 CGACAAACGAATAAACCAATGAGC 59.447 41.667 0.00 0.00 45.77 4.26
5014 5103 5.685841 ACGACAAACGAATAAACCAATGAG 58.314 37.500 0.00 0.00 45.77 2.90
5015 5104 5.236695 TGACGACAAACGAATAAACCAATGA 59.763 36.000 0.00 0.00 45.77 2.57
5107 5196 0.879090 AACTGATCGGGCCGAAAAAC 59.121 50.000 34.58 22.82 39.99 2.43
5128 5278 8.810652 AATCAATGCGTTACACTTACAATTTT 57.189 26.923 0.00 0.00 0.00 1.82
5146 5296 7.675962 ACCAATCAACCAAATGAAATCAATG 57.324 32.000 0.00 0.00 32.06 2.82
5167 5318 9.877178 AAATGAAATTGTTACAGTTTACAACCA 57.123 25.926 5.84 0.86 36.10 3.67
5328 5480 4.379813 CCAGATTCTGAAACATCAAACCGG 60.380 45.833 15.36 0.00 32.44 5.28
5333 5485 3.760151 CTGCCCAGATTCTGAAACATCAA 59.240 43.478 15.36 0.00 32.44 2.57
5343 5495 3.135530 GTCATAGGAACTGCCCAGATTCT 59.864 47.826 1.69 0.00 41.52 2.40
5352 5504 2.234908 AGACCACTGTCATAGGAACTGC 59.765 50.000 0.00 0.00 44.33 4.40
5353 5505 4.462834 TGTAGACCACTGTCATAGGAACTG 59.537 45.833 0.00 0.00 44.33 3.16
5355 5507 5.401531 TTGTAGACCACTGTCATAGGAAC 57.598 43.478 0.00 0.00 44.33 3.62
5360 5512 4.430007 GCGATTTGTAGACCACTGTCATA 58.570 43.478 0.00 0.00 44.33 2.15
5364 5516 1.346395 TGGCGATTTGTAGACCACTGT 59.654 47.619 0.00 0.00 0.00 3.55
5382 5534 4.378459 GCAACGTACTCCTTTTCAAGATGG 60.378 45.833 0.00 0.00 0.00 3.51
5397 5549 5.522460 ACATATCCAAGTACATGCAACGTAC 59.478 40.000 17.69 17.69 39.64 3.67
5398 5550 5.522097 CACATATCCAAGTACATGCAACGTA 59.478 40.000 0.00 0.00 0.00 3.57
5399 5551 4.332543 CACATATCCAAGTACATGCAACGT 59.667 41.667 0.00 0.00 0.00 3.99
5400 5552 4.332543 ACACATATCCAAGTACATGCAACG 59.667 41.667 0.00 0.00 0.00 4.10
5401 5553 5.353956 TGACACATATCCAAGTACATGCAAC 59.646 40.000 0.00 0.00 0.00 4.17
5402 5554 5.495640 TGACACATATCCAAGTACATGCAA 58.504 37.500 0.00 0.00 0.00 4.08
5403 5555 5.096443 TGACACATATCCAAGTACATGCA 57.904 39.130 0.00 0.00 0.00 3.96
5404 5556 5.359756 TCTGACACATATCCAAGTACATGC 58.640 41.667 0.00 0.00 0.00 4.06
5405 5557 9.148104 CATATCTGACACATATCCAAGTACATG 57.852 37.037 0.00 0.00 0.00 3.21
5406 5558 7.821359 GCATATCTGACACATATCCAAGTACAT 59.179 37.037 0.00 0.00 0.00 2.29
5407 5559 7.154656 GCATATCTGACACATATCCAAGTACA 58.845 38.462 0.00 0.00 0.00 2.90
5408 5560 6.309009 CGCATATCTGACACATATCCAAGTAC 59.691 42.308 0.00 0.00 0.00 2.73
5409 5561 6.208599 TCGCATATCTGACACATATCCAAGTA 59.791 38.462 0.00 0.00 0.00 2.24
5410 5562 5.011023 TCGCATATCTGACACATATCCAAGT 59.989 40.000 0.00 0.00 0.00 3.16
5411 5563 5.473039 TCGCATATCTGACACATATCCAAG 58.527 41.667 0.00 0.00 0.00 3.61
5412 5564 5.467035 TCGCATATCTGACACATATCCAA 57.533 39.130 0.00 0.00 0.00 3.53
5413 5565 5.665916 ATCGCATATCTGACACATATCCA 57.334 39.130 0.00 0.00 0.00 3.41
5414 5566 5.683302 CGTATCGCATATCTGACACATATCC 59.317 44.000 0.00 0.00 0.00 2.59
5415 5567 5.683302 CCGTATCGCATATCTGACACATATC 59.317 44.000 0.00 0.00 0.00 1.63
5416 5568 5.450550 CCCGTATCGCATATCTGACACATAT 60.451 44.000 0.00 0.00 0.00 1.78
5417 5569 4.142469 CCCGTATCGCATATCTGACACATA 60.142 45.833 0.00 0.00 0.00 2.29
5418 5570 3.367395 CCCGTATCGCATATCTGACACAT 60.367 47.826 0.00 0.00 0.00 3.21
5419 5571 2.030274 CCCGTATCGCATATCTGACACA 60.030 50.000 0.00 0.00 0.00 3.72
5420 5572 2.596452 CCCGTATCGCATATCTGACAC 58.404 52.381 0.00 0.00 0.00 3.67
5421 5573 1.544246 CCCCGTATCGCATATCTGACA 59.456 52.381 0.00 0.00 0.00 3.58
5422 5574 1.816835 TCCCCGTATCGCATATCTGAC 59.183 52.381 0.00 0.00 0.00 3.51
5423 5575 2.209690 TCCCCGTATCGCATATCTGA 57.790 50.000 0.00 0.00 0.00 3.27
5424 5576 3.380320 TGTATCCCCGTATCGCATATCTG 59.620 47.826 0.00 0.00 0.00 2.90
5425 5577 3.380637 GTGTATCCCCGTATCGCATATCT 59.619 47.826 0.00 0.00 0.00 1.98
5426 5578 3.380637 AGTGTATCCCCGTATCGCATATC 59.619 47.826 0.00 0.00 0.00 1.63
5427 5579 3.362706 AGTGTATCCCCGTATCGCATAT 58.637 45.455 0.00 0.00 0.00 1.78
5428 5580 2.751259 GAGTGTATCCCCGTATCGCATA 59.249 50.000 0.00 0.00 0.00 3.14
5429 5581 1.544691 GAGTGTATCCCCGTATCGCAT 59.455 52.381 0.00 0.00 0.00 4.73
5430 5582 0.956633 GAGTGTATCCCCGTATCGCA 59.043 55.000 0.00 0.00 0.00 5.10
5431 5583 0.109873 CGAGTGTATCCCCGTATCGC 60.110 60.000 0.00 0.00 0.00 4.58
5432 5584 1.196354 GTCGAGTGTATCCCCGTATCG 59.804 57.143 0.00 0.00 0.00 2.92
5433 5585 2.031333 GTGTCGAGTGTATCCCCGTATC 60.031 54.545 0.00 0.00 0.00 2.24
5434 5586 1.952296 GTGTCGAGTGTATCCCCGTAT 59.048 52.381 0.00 0.00 0.00 3.06
5435 5587 1.339920 TGTGTCGAGTGTATCCCCGTA 60.340 52.381 0.00 0.00 0.00 4.02
5436 5588 0.609957 TGTGTCGAGTGTATCCCCGT 60.610 55.000 0.00 0.00 0.00 5.28
5437 5589 0.179145 GTGTGTCGAGTGTATCCCCG 60.179 60.000 0.00 0.00 0.00 5.73
5438 5590 0.175073 GGTGTGTCGAGTGTATCCCC 59.825 60.000 0.00 0.00 0.00 4.81
5439 5591 0.892755 TGGTGTGTCGAGTGTATCCC 59.107 55.000 0.00 0.00 0.00 3.85
5440 5592 2.736144 TTGGTGTGTCGAGTGTATCC 57.264 50.000 0.00 0.00 0.00 2.59
5441 5593 5.408604 AGAAAATTGGTGTGTCGAGTGTATC 59.591 40.000 0.00 0.00 0.00 2.24
5442 5594 5.305585 AGAAAATTGGTGTGTCGAGTGTAT 58.694 37.500 0.00 0.00 0.00 2.29
5443 5595 4.699637 AGAAAATTGGTGTGTCGAGTGTA 58.300 39.130 0.00 0.00 0.00 2.90
5444 5596 3.541632 AGAAAATTGGTGTGTCGAGTGT 58.458 40.909 0.00 0.00 0.00 3.55
5445 5597 5.666969 TTAGAAAATTGGTGTGTCGAGTG 57.333 39.130 0.00 0.00 0.00 3.51
5446 5598 6.687081 TTTTAGAAAATTGGTGTGTCGAGT 57.313 33.333 0.00 0.00 0.00 4.18
5447 5599 5.625311 GCTTTTAGAAAATTGGTGTGTCGAG 59.375 40.000 0.00 0.00 0.00 4.04
5448 5600 5.298276 AGCTTTTAGAAAATTGGTGTGTCGA 59.702 36.000 0.00 0.00 0.00 4.20
5449 5601 5.519722 AGCTTTTAGAAAATTGGTGTGTCG 58.480 37.500 0.00 0.00 0.00 4.35
5450 5602 7.084486 CCTAGCTTTTAGAAAATTGGTGTGTC 58.916 38.462 0.00 0.00 0.00 3.67
5451 5603 6.015434 CCCTAGCTTTTAGAAAATTGGTGTGT 60.015 38.462 0.00 0.00 0.00 3.72
5452 5604 6.015434 ACCCTAGCTTTTAGAAAATTGGTGTG 60.015 38.462 0.00 0.00 0.00 3.82
5453 5605 6.075315 ACCCTAGCTTTTAGAAAATTGGTGT 58.925 36.000 0.00 0.00 0.00 4.16
5454 5606 6.590234 ACCCTAGCTTTTAGAAAATTGGTG 57.410 37.500 0.00 0.00 0.00 4.17
5455 5607 7.235804 TGTACCCTAGCTTTTAGAAAATTGGT 58.764 34.615 0.00 0.00 0.00 3.67
5456 5608 7.696992 TGTACCCTAGCTTTTAGAAAATTGG 57.303 36.000 0.00 0.00 0.00 3.16
5457 5609 8.956426 TCATGTACCCTAGCTTTTAGAAAATTG 58.044 33.333 0.00 0.00 0.00 2.32
5458 5610 9.700831 ATCATGTACCCTAGCTTTTAGAAAATT 57.299 29.630 0.00 0.00 0.00 1.82
5460 5612 9.609346 GTATCATGTACCCTAGCTTTTAGAAAA 57.391 33.333 0.00 0.00 0.00 2.29
5461 5613 8.764558 TGTATCATGTACCCTAGCTTTTAGAAA 58.235 33.333 0.00 0.00 0.00 2.52
5462 5614 8.313944 TGTATCATGTACCCTAGCTTTTAGAA 57.686 34.615 0.00 0.00 0.00 2.10
5463 5615 7.907841 TGTATCATGTACCCTAGCTTTTAGA 57.092 36.000 0.00 0.00 0.00 2.10
5464 5616 9.561069 AAATGTATCATGTACCCTAGCTTTTAG 57.439 33.333 0.00 0.00 0.00 1.85
5526 5678 6.729690 TTTGACATGGATGTTCCTCTTTTT 57.270 33.333 0.00 0.00 41.95 1.94
5527 5679 5.279156 GCTTTGACATGGATGTTCCTCTTTT 60.279 40.000 0.00 0.00 41.95 2.27
5528 5680 4.219288 GCTTTGACATGGATGTTCCTCTTT 59.781 41.667 0.00 0.00 41.95 2.52
5529 5681 3.760684 GCTTTGACATGGATGTTCCTCTT 59.239 43.478 0.00 0.00 41.95 2.85
5530 5682 3.245016 TGCTTTGACATGGATGTTCCTCT 60.245 43.478 0.00 0.00 41.95 3.69
5531 5683 3.084039 TGCTTTGACATGGATGTTCCTC 58.916 45.455 0.00 0.00 41.95 3.71
5532 5684 3.159213 TGCTTTGACATGGATGTTCCT 57.841 42.857 0.00 0.00 41.95 3.36
5533 5685 3.777478 CATGCTTTGACATGGATGTTCC 58.223 45.455 0.00 0.00 43.05 3.62
5534 5686 3.184541 GCATGCTTTGACATGGATGTTC 58.815 45.455 11.37 0.00 46.14 3.18
5535 5687 2.416296 CGCATGCTTTGACATGGATGTT 60.416 45.455 17.13 0.00 46.14 2.71
5536 5688 1.133598 CGCATGCTTTGACATGGATGT 59.866 47.619 17.13 0.00 46.14 3.06
5537 5689 1.133598 ACGCATGCTTTGACATGGATG 59.866 47.619 17.13 0.00 46.14 3.51
5538 5690 1.402968 GACGCATGCTTTGACATGGAT 59.597 47.619 17.13 0.00 46.14 3.41
5539 5691 0.804364 GACGCATGCTTTGACATGGA 59.196 50.000 17.13 0.00 46.14 3.41
5540 5692 0.522626 TGACGCATGCTTTGACATGG 59.477 50.000 17.13 0.00 46.14 3.66
5542 5694 3.065786 CCTATTGACGCATGCTTTGACAT 59.934 43.478 17.13 2.89 0.00 3.06
5543 5695 2.419673 CCTATTGACGCATGCTTTGACA 59.580 45.455 17.13 4.11 0.00 3.58
5544 5696 2.677836 TCCTATTGACGCATGCTTTGAC 59.322 45.455 17.13 1.25 0.00 3.18
5545 5697 2.677836 GTCCTATTGACGCATGCTTTGA 59.322 45.455 17.13 0.00 33.49 2.69
5546 5698 3.056952 GTCCTATTGACGCATGCTTTG 57.943 47.619 17.13 2.44 33.49 2.77
5556 5708 5.695424 AAAGGAGGGTTAGTCCTATTGAC 57.305 43.478 0.00 0.00 44.17 3.18
5557 5709 6.713731 AAAAAGGAGGGTTAGTCCTATTGA 57.286 37.500 0.00 0.00 44.17 2.57
5579 5731 3.096092 AGTGGACCAAGTGCAAGAAAAA 58.904 40.909 0.00 0.00 35.32 1.94
5580 5732 2.733956 AGTGGACCAAGTGCAAGAAAA 58.266 42.857 0.00 0.00 35.32 2.29
5581 5733 2.435372 AGTGGACCAAGTGCAAGAAA 57.565 45.000 0.00 0.00 35.32 2.52
5582 5734 2.297701 GAAGTGGACCAAGTGCAAGAA 58.702 47.619 0.00 0.00 35.32 2.52
5583 5735 1.476833 GGAAGTGGACCAAGTGCAAGA 60.477 52.381 0.00 0.00 35.32 3.02
5584 5736 0.954452 GGAAGTGGACCAAGTGCAAG 59.046 55.000 0.00 0.00 35.32 4.01
5585 5737 0.257328 TGGAAGTGGACCAAGTGCAA 59.743 50.000 0.00 0.00 35.32 4.08
5586 5738 0.478072 ATGGAAGTGGACCAAGTGCA 59.522 50.000 0.00 0.00 40.93 4.57
5587 5739 1.168714 GATGGAAGTGGACCAAGTGC 58.831 55.000 0.00 0.00 40.93 4.40
5588 5740 2.224621 ACTGATGGAAGTGGACCAAGTG 60.225 50.000 0.00 0.00 40.93 3.16
5589 5741 2.057922 ACTGATGGAAGTGGACCAAGT 58.942 47.619 0.00 0.00 40.93 3.16
5590 5742 2.867109 ACTGATGGAAGTGGACCAAG 57.133 50.000 0.00 0.00 40.93 3.61
5591 5743 3.593442 AAACTGATGGAAGTGGACCAA 57.407 42.857 0.00 0.00 40.93 3.67
5592 5744 3.593442 AAAACTGATGGAAGTGGACCA 57.407 42.857 0.00 0.00 41.83 4.02
5612 5764 3.399644 TGGAAGTGGACCATCCCTAAAAA 59.600 43.478 11.00 0.00 35.03 1.94
5613 5765 2.990284 TGGAAGTGGACCATCCCTAAAA 59.010 45.455 11.00 0.00 35.03 1.52
5614 5766 2.638325 TGGAAGTGGACCATCCCTAAA 58.362 47.619 11.00 0.00 35.03 1.85
5615 5767 2.352561 TGGAAGTGGACCATCCCTAA 57.647 50.000 11.00 0.00 35.03 2.69
5616 5768 2.587060 ATGGAAGTGGACCATCCCTA 57.413 50.000 11.00 0.00 43.62 3.53
5617 5769 3.443095 ATGGAAGTGGACCATCCCT 57.557 52.632 11.00 0.00 43.62 4.20
5622 5774 2.566833 CAACTGATGGAAGTGGACCA 57.433 50.000 0.00 0.00 41.83 4.02
5633 5785 1.843368 AATCCCACTGCCAACTGATG 58.157 50.000 0.00 0.00 0.00 3.07
5634 5786 2.610438 AAATCCCACTGCCAACTGAT 57.390 45.000 0.00 0.00 0.00 2.90
5635 5787 2.238521 GAAAATCCCACTGCCAACTGA 58.761 47.619 0.00 0.00 0.00 3.41
5636 5788 1.273327 GGAAAATCCCACTGCCAACTG 59.727 52.381 0.00 0.00 0.00 3.16
5637 5789 1.147817 AGGAAAATCCCACTGCCAACT 59.852 47.619 0.00 0.00 37.19 3.16
5638 5790 1.632589 AGGAAAATCCCACTGCCAAC 58.367 50.000 0.00 0.00 37.19 3.77
5639 5791 2.291540 CCTAGGAAAATCCCACTGCCAA 60.292 50.000 1.05 0.00 37.19 4.52
5640 5792 1.284785 CCTAGGAAAATCCCACTGCCA 59.715 52.381 1.05 0.00 37.19 4.92
5641 5793 1.285078 ACCTAGGAAAATCCCACTGCC 59.715 52.381 17.98 0.00 37.19 4.85
5642 5794 2.808906 ACCTAGGAAAATCCCACTGC 57.191 50.000 17.98 0.00 37.19 4.40
5643 5795 4.407365 ACAAACCTAGGAAAATCCCACTG 58.593 43.478 17.98 0.00 37.19 3.66
5644 5796 4.741928 ACAAACCTAGGAAAATCCCACT 57.258 40.909 17.98 0.00 37.19 4.00
5645 5797 4.560716 GCAACAAACCTAGGAAAATCCCAC 60.561 45.833 17.98 0.00 37.19 4.61
5646 5798 3.576550 GCAACAAACCTAGGAAAATCCCA 59.423 43.478 17.98 0.00 37.19 4.37
5647 5799 3.832490 AGCAACAAACCTAGGAAAATCCC 59.168 43.478 17.98 0.00 37.19 3.85
5648 5800 4.767409 AGAGCAACAAACCTAGGAAAATCC 59.233 41.667 17.98 0.00 36.58 3.01
5649 5801 5.241728 ACAGAGCAACAAACCTAGGAAAATC 59.758 40.000 17.98 2.41 0.00 2.17
5650 5802 5.140454 ACAGAGCAACAAACCTAGGAAAAT 58.860 37.500 17.98 0.00 0.00 1.82
5651 5803 4.532834 ACAGAGCAACAAACCTAGGAAAA 58.467 39.130 17.98 0.00 0.00 2.29
5652 5804 4.134563 GACAGAGCAACAAACCTAGGAAA 58.865 43.478 17.98 0.00 0.00 3.13
5653 5805 3.391296 AGACAGAGCAACAAACCTAGGAA 59.609 43.478 17.98 0.00 0.00 3.36
5654 5806 2.972713 AGACAGAGCAACAAACCTAGGA 59.027 45.455 17.98 0.00 0.00 2.94
5655 5807 3.244215 TGAGACAGAGCAACAAACCTAGG 60.244 47.826 7.41 7.41 0.00 3.02
5656 5808 3.995199 TGAGACAGAGCAACAAACCTAG 58.005 45.455 0.00 0.00 0.00 3.02
5657 5809 4.415881 TTGAGACAGAGCAACAAACCTA 57.584 40.909 0.00 0.00 0.00 3.08
5658 5810 3.281727 TTGAGACAGAGCAACAAACCT 57.718 42.857 0.00 0.00 0.00 3.50
5659 5811 3.565482 TGATTGAGACAGAGCAACAAACC 59.435 43.478 0.00 0.00 0.00 3.27
5660 5812 4.818534 TGATTGAGACAGAGCAACAAAC 57.181 40.909 0.00 0.00 0.00 2.93
5661 5813 5.765176 CATTGATTGAGACAGAGCAACAAA 58.235 37.500 0.00 0.00 0.00 2.83
5662 5814 4.320714 GCATTGATTGAGACAGAGCAACAA 60.321 41.667 0.00 0.00 0.00 2.83
5663 5815 3.189910 GCATTGATTGAGACAGAGCAACA 59.810 43.478 0.00 0.00 0.00 3.33
5664 5816 3.189910 TGCATTGATTGAGACAGAGCAAC 59.810 43.478 0.00 0.00 0.00 4.17
5665 5817 3.414269 TGCATTGATTGAGACAGAGCAA 58.586 40.909 0.00 0.00 0.00 3.91
5666 5818 3.062122 TGCATTGATTGAGACAGAGCA 57.938 42.857 0.00 0.00 0.00 4.26
5667 5819 3.303197 CGATGCATTGATTGAGACAGAGC 60.303 47.826 8.37 0.00 0.00 4.09
5668 5820 4.025896 GTCGATGCATTGATTGAGACAGAG 60.026 45.833 19.59 0.00 0.00 3.35
5669 5821 3.867493 GTCGATGCATTGATTGAGACAGA 59.133 43.478 19.59 0.00 0.00 3.41
5670 5822 3.869832 AGTCGATGCATTGATTGAGACAG 59.130 43.478 19.59 0.00 0.00 3.51
5671 5823 3.865446 AGTCGATGCATTGATTGAGACA 58.135 40.909 19.59 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.