Multiple sequence alignment - TraesCS6A01G326800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G326800 chr6A 100.000 3464 0 0 1 3464 560193879 560190416 0.000000e+00 6397.0
1 TraesCS6A01G326800 chr6A 88.663 1473 125 14 986 2446 560444240 560445682 0.000000e+00 1757.0
2 TraesCS6A01G326800 chr6D 94.374 2133 92 10 894 3003 417752192 417750065 0.000000e+00 3249.0
3 TraesCS6A01G326800 chr6D 90.733 1500 107 14 978 2464 417775826 417777306 0.000000e+00 1971.0
4 TraesCS6A01G326800 chr6D 85.616 292 32 6 42 325 427085073 427085362 7.270000e-77 298.0
5 TraesCS6A01G326800 chr6D 88.889 198 19 3 42 237 14719359 14719555 1.240000e-59 241.0
6 TraesCS6A01G326800 chr6D 89.041 146 16 0 182 327 121466298 121466443 7.640000e-42 182.0
7 TraesCS6A01G326800 chr6D 86.525 141 16 1 2688 2825 417777375 417777515 5.990000e-33 152.0
8 TraesCS6A01G326800 chr6B 94.251 1583 80 3 894 2469 626643812 626645390 0.000000e+00 2409.0
9 TraesCS6A01G326800 chr6B 92.612 1137 83 1 1337 2472 626489330 626488194 0.000000e+00 1633.0
10 TraesCS6A01G326800 chr6B 84.340 447 46 19 2770 3206 626645587 626646019 1.920000e-112 416.0
11 TraesCS6A01G326800 chr6B 91.150 113 8 2 3094 3206 626487600 626487490 5.990000e-33 152.0
12 TraesCS6A01G326800 chr3D 87.500 1448 168 5 1008 2444 17343126 17341681 0.000000e+00 1659.0
13 TraesCS6A01G326800 chr3D 84.298 1452 215 9 1008 2456 17698286 17699727 0.000000e+00 1406.0
14 TraesCS6A01G326800 chr1D 89.902 921 40 8 1 891 302250251 302249354 0.000000e+00 1136.0
15 TraesCS6A01G326800 chr1D 84.536 97 13 2 751 846 12068167 12068072 1.020000e-15 95.3
16 TraesCS6A01G326800 chr5D 89.457 920 64 10 1 891 72376576 72377491 0.000000e+00 1131.0
17 TraesCS6A01G326800 chr5D 88.817 921 57 10 1 891 334365300 334366204 0.000000e+00 1088.0
18 TraesCS6A01G326800 chr5D 92.246 748 32 9 1 725 505776260 505775516 0.000000e+00 1037.0
19 TraesCS6A01G326800 chr5D 89.416 548 46 5 354 891 289348721 289348176 0.000000e+00 680.0
20 TraesCS6A01G326800 chr5D 87.143 420 39 9 354 761 78605592 78605176 2.440000e-126 462.0
21 TraesCS6A01G326800 chr5D 95.167 269 11 2 3198 3464 321393694 321393962 1.150000e-114 424.0
22 TraesCS6A01G326800 chr5D 94.118 170 10 0 722 891 505766315 505766146 3.430000e-65 259.0
23 TraesCS6A01G326800 chr2D 88.491 921 74 13 1 891 10142189 10143107 0.000000e+00 1085.0
24 TraesCS6A01G326800 chr2D 81.115 323 29 18 42 360 546736119 546735825 2.690000e-56 230.0
25 TraesCS6A01G326800 chr3B 88.389 844 92 4 1628 2467 24902080 24901239 0.000000e+00 1011.0
26 TraesCS6A01G326800 chr3A 83.349 1093 168 11 1008 2096 18818921 18820003 0.000000e+00 998.0
27 TraesCS6A01G326800 chr3A 83.349 1093 168 11 1008 2096 19266059 19264977 0.000000e+00 998.0
28 TraesCS6A01G326800 chr3A 84.636 742 90 12 1702 2435 19269645 19268920 0.000000e+00 717.0
29 TraesCS6A01G326800 chr1A 79.430 948 174 12 1009 1947 533323414 533324349 0.000000e+00 651.0
30 TraesCS6A01G326800 chr1A 95.817 263 11 0 3202 3464 47995422 47995160 3.200000e-115 425.0
31 TraesCS6A01G326800 chr1A 94.737 38 2 0 2956 2993 56611668 56611631 3.730000e-05 60.2
32 TraesCS6A01G326800 chr7D 89.375 480 45 4 416 891 4389851 4389374 1.780000e-167 599.0
33 TraesCS6A01G326800 chr4A 87.554 466 49 4 433 891 739158677 739159140 6.580000e-147 531.0
34 TraesCS6A01G326800 chr4A 95.522 268 12 0 3197 3464 113870189 113870456 2.470000e-116 429.0
35 TraesCS6A01G326800 chr5A 96.923 260 8 0 3205 3464 311113715 311113974 1.480000e-118 436.0
36 TraesCS6A01G326800 chr5A 96.183 262 10 0 3203 3464 437028434 437028173 2.470000e-116 429.0
37 TraesCS6A01G326800 chr5A 95.149 268 12 1 3198 3464 86618484 86618751 4.130000e-114 422.0
38 TraesCS6A01G326800 chr5A 83.735 332 39 11 42 360 24408900 24409229 2.020000e-77 300.0
39 TraesCS6A01G326800 chr7A 96.899 258 8 0 3207 3464 462539127 462539384 1.910000e-117 433.0
40 TraesCS6A01G326800 chr7A 96.899 258 8 0 3207 3464 558048220 558048477 1.910000e-117 433.0
41 TraesCS6A01G326800 chr4D 95.472 265 12 0 3200 3464 374008529 374008265 1.150000e-114 424.0
42 TraesCS6A01G326800 chr1B 84.639 332 35 8 42 360 650493219 650492891 2.010000e-82 316.0
43 TraesCS6A01G326800 chr1B 81.967 244 30 7 97 327 658462163 658461921 9.810000e-46 195.0
44 TraesCS6A01G326800 chr1B 92.857 42 3 0 2943 2984 573863004 573862963 1.040000e-05 62.1
45 TraesCS6A01G326800 chr5B 86.333 300 26 7 42 327 72250247 72249949 2.600000e-81 313.0
46 TraesCS6A01G326800 chr5B 95.000 40 2 0 2954 2993 492820241 492820280 2.890000e-06 63.9
47 TraesCS6A01G326800 chr2A 85.859 198 23 5 42 236 689764358 689764553 4.530000e-49 206.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G326800 chr6A 560190416 560193879 3463 True 6397.0 6397 100.0000 1 3464 1 chr6A.!!$R1 3463
1 TraesCS6A01G326800 chr6A 560444240 560445682 1442 False 1757.0 1757 88.6630 986 2446 1 chr6A.!!$F1 1460
2 TraesCS6A01G326800 chr6D 417750065 417752192 2127 True 3249.0 3249 94.3740 894 3003 1 chr6D.!!$R1 2109
3 TraesCS6A01G326800 chr6D 417775826 417777515 1689 False 1061.5 1971 88.6290 978 2825 2 chr6D.!!$F4 1847
4 TraesCS6A01G326800 chr6B 626643812 626646019 2207 False 1412.5 2409 89.2955 894 3206 2 chr6B.!!$F1 2312
5 TraesCS6A01G326800 chr6B 626487490 626489330 1840 True 892.5 1633 91.8810 1337 3206 2 chr6B.!!$R1 1869
6 TraesCS6A01G326800 chr3D 17341681 17343126 1445 True 1659.0 1659 87.5000 1008 2444 1 chr3D.!!$R1 1436
7 TraesCS6A01G326800 chr3D 17698286 17699727 1441 False 1406.0 1406 84.2980 1008 2456 1 chr3D.!!$F1 1448
8 TraesCS6A01G326800 chr1D 302249354 302250251 897 True 1136.0 1136 89.9020 1 891 1 chr1D.!!$R2 890
9 TraesCS6A01G326800 chr5D 72376576 72377491 915 False 1131.0 1131 89.4570 1 891 1 chr5D.!!$F1 890
10 TraesCS6A01G326800 chr5D 334365300 334366204 904 False 1088.0 1088 88.8170 1 891 1 chr5D.!!$F3 890
11 TraesCS6A01G326800 chr5D 505775516 505776260 744 True 1037.0 1037 92.2460 1 725 1 chr5D.!!$R4 724
12 TraesCS6A01G326800 chr5D 289348176 289348721 545 True 680.0 680 89.4160 354 891 1 chr5D.!!$R2 537
13 TraesCS6A01G326800 chr2D 10142189 10143107 918 False 1085.0 1085 88.4910 1 891 1 chr2D.!!$F1 890
14 TraesCS6A01G326800 chr3B 24901239 24902080 841 True 1011.0 1011 88.3890 1628 2467 1 chr3B.!!$R1 839
15 TraesCS6A01G326800 chr3A 18818921 18820003 1082 False 998.0 998 83.3490 1008 2096 1 chr3A.!!$F1 1088
16 TraesCS6A01G326800 chr3A 19264977 19269645 4668 True 857.5 998 83.9925 1008 2435 2 chr3A.!!$R1 1427
17 TraesCS6A01G326800 chr1A 533323414 533324349 935 False 651.0 651 79.4300 1009 1947 1 chr1A.!!$F1 938

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
956 1021 0.321996 GAGTTCATATCCTCCCGGCC 59.678 60.0 0.0 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2578 5352 0.734889 CCCGCGAAAATCAGCAAGAT 59.265 50.0 8.23 0.0 39.09 2.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
171 203 7.658167 TCACTTATTCCGAAACACATACTTCAA 59.342 33.333 0.00 0.00 0.00 2.69
211 244 9.858247 CAATTTCACTCATTCAAAAACAGATTG 57.142 29.630 0.00 0.00 0.00 2.67
263 296 8.087750 ACACCGATTTCACATATTTGAAAACAT 58.912 29.630 18.30 5.17 46.06 2.71
295 328 9.706691 TCATTCGTTTCAAAGAACTAGTTAGAT 57.293 29.630 8.42 0.00 0.00 1.98
744 809 1.430632 GACCATGCATGCGTCCTTG 59.569 57.895 25.71 13.69 0.00 3.61
778 843 4.455606 GTGGGACCCAAGATAGAGAAATG 58.544 47.826 16.98 0.00 34.18 2.32
781 846 3.432326 GGACCCAAGATAGAGAAATGCGT 60.432 47.826 0.00 0.00 0.00 5.24
858 923 1.344065 TGTGATTGGGTGTAGTCCGT 58.656 50.000 0.00 0.00 0.00 4.69
859 924 1.001520 TGTGATTGGGTGTAGTCCGTG 59.998 52.381 0.00 0.00 0.00 4.94
891 956 3.059393 CGACACCGGTAAAAAGAGGTTTC 60.059 47.826 6.87 0.00 34.25 2.78
892 957 3.216800 ACACCGGTAAAAAGAGGTTTCC 58.783 45.455 6.87 0.00 34.25 3.13
897 962 3.748083 GGTAAAAAGAGGTTTCCCGAGT 58.252 45.455 0.00 0.00 35.12 4.18
953 1018 1.954382 TCACGAGTTCATATCCTCCCG 59.046 52.381 0.00 0.00 0.00 5.14
956 1021 0.321996 GAGTTCATATCCTCCCGGCC 59.678 60.000 0.00 0.00 0.00 6.13
957 1022 1.004918 GTTCATATCCTCCCGGCCG 60.005 63.158 21.04 21.04 0.00 6.13
958 1023 2.214216 TTCATATCCTCCCGGCCGG 61.214 63.158 37.99 37.99 0.00 6.13
1020 3600 0.679505 TGGAGAAGAAGACGGTGGTG 59.320 55.000 0.00 0.00 0.00 4.17
1301 3881 3.129502 CGACCGCCTCCACGACTA 61.130 66.667 0.00 0.00 34.06 2.59
1347 3936 1.004918 GGTTGTGGACTCCCTGTCG 60.005 63.158 0.00 0.00 46.24 4.35
1431 4029 2.668550 GCCACCTTCGTCGCCTTT 60.669 61.111 0.00 0.00 0.00 3.11
1449 4047 4.162690 GCCCAGCTCCCTACGGTG 62.163 72.222 0.00 0.00 0.00 4.94
1677 4282 2.373707 GGTGGCTGCTCTCAGGGAT 61.374 63.158 0.00 0.00 40.65 3.85
1764 4369 2.314647 CGACGCCGAGGCAAAAGAA 61.315 57.895 15.03 0.00 42.06 2.52
1949 4557 4.180946 CAGCGACGACCCGGAGAG 62.181 72.222 0.73 0.00 0.00 3.20
2464 5076 0.181350 GATCCATGGGAGTGGGTGAC 59.819 60.000 13.02 0.00 39.80 3.67
2520 5294 6.687081 TTCTTTTTCGTTTGGAAGAGCTAA 57.313 33.333 0.00 0.00 35.70 3.09
2554 5328 7.826744 TGTTTGTGTGCAATAATCCTACATCTA 59.173 33.333 0.00 0.00 34.18 1.98
2574 5348 6.683974 TCTACACCATCTACGTAACCTTAC 57.316 41.667 0.00 0.00 0.00 2.34
2576 5350 5.990120 ACACCATCTACGTAACCTTACTT 57.010 39.130 0.00 0.00 0.00 2.24
2577 5351 8.046708 TCTACACCATCTACGTAACCTTACTTA 58.953 37.037 0.00 0.00 0.00 2.24
2578 5352 7.466746 ACACCATCTACGTAACCTTACTTAA 57.533 36.000 0.00 0.00 0.00 1.85
2579 5353 8.071177 ACACCATCTACGTAACCTTACTTAAT 57.929 34.615 0.00 0.00 0.00 1.40
2580 5354 8.193438 ACACCATCTACGTAACCTTACTTAATC 58.807 37.037 0.00 0.00 0.00 1.75
2581 5355 8.411683 CACCATCTACGTAACCTTACTTAATCT 58.588 37.037 0.00 0.00 0.00 2.40
2582 5356 8.975295 ACCATCTACGTAACCTTACTTAATCTT 58.025 33.333 0.00 0.00 0.00 2.40
2583 5357 9.245962 CCATCTACGTAACCTTACTTAATCTTG 57.754 37.037 0.00 0.00 0.00 3.02
2633 5407 6.262720 GCCATTTTCTCTTCTAATCAGAGCAT 59.737 38.462 0.00 0.00 38.17 3.79
2777 5559 4.873768 TCGCAATAAATCGAGAAATGCA 57.126 36.364 11.73 0.00 32.80 3.96
2808 5621 1.552578 TGCACGACAGGGTATACAGT 58.447 50.000 5.01 0.00 0.00 3.55
2872 5720 7.414222 TTTAGTGACATACTCCTTCCGTTAT 57.586 36.000 0.00 0.00 40.89 1.89
2877 5725 5.010719 TGACATACTCCTTCCGTTATCATCC 59.989 44.000 0.00 0.00 0.00 3.51
2954 5808 5.843019 ATATCCCACTCGTCCCATAAAAT 57.157 39.130 0.00 0.00 0.00 1.82
3044 5898 6.373186 AAAAGTGTGCTCTACAAACCTTAC 57.627 37.500 0.00 0.00 41.89 2.34
3053 5907 6.038936 TGCTCTACAAACCTTACAAAAAGACC 59.961 38.462 0.00 0.00 0.00 3.85
3134 6017 5.023533 TGACTGTGAGTGATAAATAGCCC 57.976 43.478 0.00 0.00 0.00 5.19
3194 6077 1.982073 GATGTCTTTGAAGCCGCCGG 61.982 60.000 0.00 0.00 0.00 6.13
3206 6089 0.812412 GCCGCCGGCTGTAGAAATAA 60.812 55.000 26.68 0.00 46.69 1.40
3207 6090 1.658994 CCGCCGGCTGTAGAAATAAA 58.341 50.000 26.68 0.00 0.00 1.40
3208 6091 1.597663 CCGCCGGCTGTAGAAATAAAG 59.402 52.381 26.68 3.22 0.00 1.85
3209 6092 1.597663 CGCCGGCTGTAGAAATAAAGG 59.402 52.381 26.68 0.00 0.00 3.11
3210 6093 2.740580 CGCCGGCTGTAGAAATAAAGGA 60.741 50.000 26.68 0.00 0.00 3.36
3211 6094 3.275999 GCCGGCTGTAGAAATAAAGGAA 58.724 45.455 22.15 0.00 0.00 3.36
3212 6095 3.692593 GCCGGCTGTAGAAATAAAGGAAA 59.307 43.478 22.15 0.00 0.00 3.13
3213 6096 4.338400 GCCGGCTGTAGAAATAAAGGAAAT 59.662 41.667 22.15 0.00 0.00 2.17
3214 6097 5.529800 GCCGGCTGTAGAAATAAAGGAAATA 59.470 40.000 22.15 0.00 0.00 1.40
3215 6098 6.206829 GCCGGCTGTAGAAATAAAGGAAATAT 59.793 38.462 22.15 0.00 0.00 1.28
3216 6099 7.584987 CCGGCTGTAGAAATAAAGGAAATATG 58.415 38.462 0.00 0.00 0.00 1.78
3217 6100 7.078228 CGGCTGTAGAAATAAAGGAAATATGC 58.922 38.462 0.00 0.00 0.00 3.14
3218 6101 7.371159 GGCTGTAGAAATAAAGGAAATATGCC 58.629 38.462 0.00 0.00 0.00 4.40
3219 6102 7.371159 GCTGTAGAAATAAAGGAAATATGCCC 58.629 38.462 0.00 0.00 0.00 5.36
3220 6103 7.231519 GCTGTAGAAATAAAGGAAATATGCCCT 59.768 37.037 0.00 0.00 0.00 5.19
3221 6104 9.793259 CTGTAGAAATAAAGGAAATATGCCCTA 57.207 33.333 0.00 0.00 31.36 3.53
3222 6105 9.793259 TGTAGAAATAAAGGAAATATGCCCTAG 57.207 33.333 0.00 0.00 31.36 3.02
3225 6108 8.728098 AGAAATAAAGGAAATATGCCCTAGAGT 58.272 33.333 0.00 0.00 31.36 3.24
3226 6109 8.926092 AAATAAAGGAAATATGCCCTAGAGTC 57.074 34.615 0.00 0.00 31.36 3.36
3227 6110 5.975988 AAAGGAAATATGCCCTAGAGTCA 57.024 39.130 0.00 0.00 31.36 3.41
3228 6111 5.975988 AAGGAAATATGCCCTAGAGTCAA 57.024 39.130 0.00 0.00 31.36 3.18
3229 6112 6.521527 AAGGAAATATGCCCTAGAGTCAAT 57.478 37.500 0.00 0.00 31.36 2.57
3230 6113 7.633018 AAGGAAATATGCCCTAGAGTCAATA 57.367 36.000 0.00 0.00 31.36 1.90
3231 6114 7.633018 AGGAAATATGCCCTAGAGTCAATAA 57.367 36.000 0.00 0.00 0.00 1.40
3232 6115 8.224620 AGGAAATATGCCCTAGAGTCAATAAT 57.775 34.615 0.00 0.00 0.00 1.28
3233 6116 9.338968 AGGAAATATGCCCTAGAGTCAATAATA 57.661 33.333 0.00 0.00 0.00 0.98
3234 6117 9.959721 GGAAATATGCCCTAGAGTCAATAATAA 57.040 33.333 0.00 0.00 0.00 1.40
3240 6123 9.646522 ATGCCCTAGAGTCAATAATAAAATTGT 57.353 29.630 0.00 0.00 37.94 2.71
3241 6124 9.474313 TGCCCTAGAGTCAATAATAAAATTGTT 57.526 29.630 0.00 0.00 37.94 2.83
3302 6185 7.490962 TTCATGCTAGAATTGTATTAACCGG 57.509 36.000 0.00 0.00 0.00 5.28
3303 6186 6.822442 TCATGCTAGAATTGTATTAACCGGA 58.178 36.000 9.46 0.00 0.00 5.14
3304 6187 7.276658 TCATGCTAGAATTGTATTAACCGGAA 58.723 34.615 9.46 0.00 0.00 4.30
3305 6188 7.771361 TCATGCTAGAATTGTATTAACCGGAAA 59.229 33.333 9.46 1.61 0.00 3.13
3306 6189 7.311364 TGCTAGAATTGTATTAACCGGAAAC 57.689 36.000 9.46 0.00 0.00 2.78
3307 6190 7.107542 TGCTAGAATTGTATTAACCGGAAACT 58.892 34.615 9.46 0.00 0.00 2.66
3308 6191 7.608761 TGCTAGAATTGTATTAACCGGAAACTT 59.391 33.333 9.46 0.00 0.00 2.66
3309 6192 9.101655 GCTAGAATTGTATTAACCGGAAACTTA 57.898 33.333 9.46 0.00 0.00 2.24
3314 6197 9.723601 AATTGTATTAACCGGAAACTTAGTACA 57.276 29.630 9.46 10.88 28.23 2.90
3315 6198 9.895138 ATTGTATTAACCGGAAACTTAGTACAT 57.105 29.630 9.46 2.28 29.53 2.29
3316 6199 8.706492 TGTATTAACCGGAAACTTAGTACATG 57.294 34.615 9.46 0.00 0.00 3.21
3317 6200 8.313292 TGTATTAACCGGAAACTTAGTACATGT 58.687 33.333 9.46 2.69 0.00 3.21
3318 6201 7.605410 ATTAACCGGAAACTTAGTACATGTG 57.395 36.000 9.46 0.00 0.00 3.21
3319 6202 4.612264 ACCGGAAACTTAGTACATGTGT 57.388 40.909 9.46 0.00 0.00 3.72
3320 6203 4.312443 ACCGGAAACTTAGTACATGTGTG 58.688 43.478 9.46 0.00 0.00 3.82
3321 6204 4.039488 ACCGGAAACTTAGTACATGTGTGA 59.961 41.667 9.46 0.00 0.00 3.58
3322 6205 4.992319 CCGGAAACTTAGTACATGTGTGAA 59.008 41.667 9.11 0.00 0.00 3.18
3323 6206 5.642063 CCGGAAACTTAGTACATGTGTGAAT 59.358 40.000 9.11 0.00 0.00 2.57
3324 6207 6.814644 CCGGAAACTTAGTACATGTGTGAATA 59.185 38.462 9.11 0.00 0.00 1.75
3325 6208 7.201496 CCGGAAACTTAGTACATGTGTGAATAC 60.201 40.741 9.11 0.00 0.00 1.89
3326 6209 7.329962 CGGAAACTTAGTACATGTGTGAATACA 59.670 37.037 9.11 0.00 34.63 2.29
3327 6210 9.162764 GGAAACTTAGTACATGTGTGAATACAT 57.837 33.333 9.11 0.00 41.77 2.29
3335 6218 9.151471 AGTACATGTGTGAATACATAGACAAAC 57.849 33.333 9.11 0.00 39.17 2.93
3336 6219 7.977789 ACATGTGTGAATACATAGACAAACA 57.022 32.000 0.00 0.00 39.17 2.83
3337 6220 8.032952 ACATGTGTGAATACATAGACAAACAG 57.967 34.615 0.00 0.00 39.17 3.16
3338 6221 7.877612 ACATGTGTGAATACATAGACAAACAGA 59.122 33.333 0.00 0.00 39.17 3.41
3339 6222 8.720562 CATGTGTGAATACATAGACAAACAGAA 58.279 33.333 0.00 0.00 39.17 3.02
3340 6223 8.846943 TGTGTGAATACATAGACAAACAGAAT 57.153 30.769 0.00 0.00 39.39 2.40
3341 6224 8.720562 TGTGTGAATACATAGACAAACAGAATG 58.279 33.333 0.00 0.00 40.12 2.67
3342 6225 8.721478 GTGTGAATACATAGACAAACAGAATGT 58.279 33.333 0.00 0.00 46.47 2.71
3357 6240 5.528043 CAGAATGTCACTAGTATGCCTCT 57.472 43.478 0.00 0.00 0.00 3.69
3358 6241 6.641169 CAGAATGTCACTAGTATGCCTCTA 57.359 41.667 0.00 0.00 0.00 2.43
3359 6242 6.442952 CAGAATGTCACTAGTATGCCTCTAC 58.557 44.000 0.00 0.00 0.00 2.59
3360 6243 6.264292 CAGAATGTCACTAGTATGCCTCTACT 59.736 42.308 0.00 0.00 36.04 2.57
3361 6244 6.836527 AGAATGTCACTAGTATGCCTCTACTT 59.163 38.462 0.00 0.00 33.96 2.24
3362 6245 5.836821 TGTCACTAGTATGCCTCTACTTG 57.163 43.478 0.00 0.00 33.96 3.16
3363 6246 5.506708 TGTCACTAGTATGCCTCTACTTGA 58.493 41.667 0.00 0.18 33.96 3.02
3364 6247 5.357314 TGTCACTAGTATGCCTCTACTTGAC 59.643 44.000 0.00 11.98 38.64 3.18
3365 6248 5.591067 GTCACTAGTATGCCTCTACTTGACT 59.409 44.000 0.00 0.00 36.95 3.41
3366 6249 6.766944 GTCACTAGTATGCCTCTACTTGACTA 59.233 42.308 0.00 0.00 36.95 2.59
3367 6250 6.993308 TCACTAGTATGCCTCTACTTGACTAG 59.007 42.308 0.00 0.00 40.35 2.57
3368 6251 5.766174 ACTAGTATGCCTCTACTTGACTAGC 59.234 44.000 0.00 0.00 38.86 3.42
3369 6252 4.798882 AGTATGCCTCTACTTGACTAGCT 58.201 43.478 0.00 0.00 0.00 3.32
3370 6253 4.825085 AGTATGCCTCTACTTGACTAGCTC 59.175 45.833 0.00 0.00 0.00 4.09
3371 6254 2.017782 TGCCTCTACTTGACTAGCTCG 58.982 52.381 0.00 0.00 0.00 5.03
3372 6255 2.018515 GCCTCTACTTGACTAGCTCGT 58.981 52.381 0.00 0.00 0.00 4.18
3373 6256 2.424246 GCCTCTACTTGACTAGCTCGTT 59.576 50.000 0.00 0.00 0.00 3.85
3374 6257 3.732471 GCCTCTACTTGACTAGCTCGTTG 60.732 52.174 0.00 0.00 0.00 4.10
3375 6258 3.690139 CCTCTACTTGACTAGCTCGTTGA 59.310 47.826 0.00 0.00 0.00 3.18
3376 6259 4.156190 CCTCTACTTGACTAGCTCGTTGAA 59.844 45.833 0.00 0.00 0.00 2.69
3377 6260 5.163602 CCTCTACTTGACTAGCTCGTTGAAT 60.164 44.000 0.00 0.00 0.00 2.57
3378 6261 5.881447 TCTACTTGACTAGCTCGTTGAATC 58.119 41.667 0.00 0.00 0.00 2.52
3379 6262 4.521130 ACTTGACTAGCTCGTTGAATCA 57.479 40.909 0.00 0.00 0.00 2.57
3380 6263 4.883083 ACTTGACTAGCTCGTTGAATCAA 58.117 39.130 0.00 0.00 0.00 2.57
3381 6264 5.482908 ACTTGACTAGCTCGTTGAATCAAT 58.517 37.500 0.00 0.00 0.00 2.57
3382 6265 5.934625 ACTTGACTAGCTCGTTGAATCAATT 59.065 36.000 0.00 0.00 0.00 2.32
3383 6266 7.097192 ACTTGACTAGCTCGTTGAATCAATTA 58.903 34.615 0.00 0.00 0.00 1.40
3384 6267 7.766278 ACTTGACTAGCTCGTTGAATCAATTAT 59.234 33.333 0.00 0.00 0.00 1.28
3385 6268 7.468922 TGACTAGCTCGTTGAATCAATTATG 57.531 36.000 0.00 0.00 0.00 1.90
3386 6269 6.479990 TGACTAGCTCGTTGAATCAATTATGG 59.520 38.462 0.00 0.00 0.00 2.74
3387 6270 6.349300 ACTAGCTCGTTGAATCAATTATGGT 58.651 36.000 0.00 0.00 0.00 3.55
3388 6271 6.823689 ACTAGCTCGTTGAATCAATTATGGTT 59.176 34.615 0.00 0.00 30.76 3.67
3389 6272 7.985184 ACTAGCTCGTTGAATCAATTATGGTTA 59.015 33.333 0.00 0.00 27.31 2.85
3390 6273 7.807977 AGCTCGTTGAATCAATTATGGTTAT 57.192 32.000 0.00 0.00 27.31 1.89
3391 6274 7.642669 AGCTCGTTGAATCAATTATGGTTATG 58.357 34.615 0.00 0.00 27.31 1.90
3392 6275 7.283127 AGCTCGTTGAATCAATTATGGTTATGT 59.717 33.333 0.00 0.00 27.31 2.29
3393 6276 7.915397 GCTCGTTGAATCAATTATGGTTATGTT 59.085 33.333 0.00 0.00 27.31 2.71
3394 6277 9.787532 CTCGTTGAATCAATTATGGTTATGTTT 57.212 29.630 0.00 0.00 27.31 2.83
3395 6278 9.781834 TCGTTGAATCAATTATGGTTATGTTTC 57.218 29.630 0.00 0.00 27.31 2.78
3396 6279 9.019764 CGTTGAATCAATTATGGTTATGTTTCC 57.980 33.333 0.00 0.00 27.31 3.13
3397 6280 9.868277 GTTGAATCAATTATGGTTATGTTTCCA 57.132 29.630 0.00 0.00 38.14 3.53
3401 6284 9.665719 AATCAATTATGGTTATGTTTCCAAACC 57.334 29.630 0.00 0.00 42.49 3.27
3407 6290 6.827586 TGGTTATGTTTCCAAACCATAGAC 57.172 37.500 2.13 1.72 45.85 2.59
3408 6291 6.307776 TGGTTATGTTTCCAAACCATAGACA 58.692 36.000 2.13 0.00 45.85 3.41
3409 6292 6.951198 TGGTTATGTTTCCAAACCATAGACAT 59.049 34.615 2.13 0.00 45.85 3.06
3410 6293 7.093988 TGGTTATGTTTCCAAACCATAGACATG 60.094 37.037 2.13 0.00 45.85 3.21
3411 6294 7.122055 GGTTATGTTTCCAAACCATAGACATGA 59.878 37.037 0.00 0.00 41.89 3.07
3412 6295 6.764308 ATGTTTCCAAACCATAGACATGAG 57.236 37.500 0.00 0.00 38.11 2.90
3413 6296 5.630121 TGTTTCCAAACCATAGACATGAGT 58.370 37.500 0.00 0.00 38.11 3.41
3414 6297 6.068010 TGTTTCCAAACCATAGACATGAGTT 58.932 36.000 0.00 0.00 38.11 3.01
3415 6298 6.016360 TGTTTCCAAACCATAGACATGAGTTG 60.016 38.462 0.00 0.00 38.11 3.16
3416 6299 5.241403 TCCAAACCATAGACATGAGTTGT 57.759 39.130 0.00 0.00 42.79 3.32
3417 6300 7.785197 GTTTCCAAACCATAGACATGAGTTGTC 60.785 40.741 0.00 0.00 42.52 3.18
3431 6314 7.596494 ACATGAGTTGTCATTTGATTAACAGG 58.404 34.615 0.00 0.00 40.84 4.00
3432 6315 7.448161 ACATGAGTTGTCATTTGATTAACAGGA 59.552 33.333 0.00 0.00 40.84 3.86
3433 6316 8.464404 CATGAGTTGTCATTTGATTAACAGGAT 58.536 33.333 10.98 1.52 40.84 3.24
3434 6317 8.044060 TGAGTTGTCATTTGATTAACAGGATC 57.956 34.615 10.98 0.00 31.06 3.36
3435 6318 7.665145 TGAGTTGTCATTTGATTAACAGGATCA 59.335 33.333 0.00 0.00 31.06 2.92
3436 6319 7.820648 AGTTGTCATTTGATTAACAGGATCAC 58.179 34.615 0.00 0.00 33.51 3.06
3437 6320 7.448161 AGTTGTCATTTGATTAACAGGATCACA 59.552 33.333 0.00 0.00 33.51 3.58
3438 6321 7.943079 TGTCATTTGATTAACAGGATCACAT 57.057 32.000 0.00 0.00 33.51 3.21
3439 6322 7.988737 TGTCATTTGATTAACAGGATCACATC 58.011 34.615 0.00 0.00 33.51 3.06
3440 6323 7.611079 TGTCATTTGATTAACAGGATCACATCA 59.389 33.333 0.00 0.00 33.51 3.07
3441 6324 8.627403 GTCATTTGATTAACAGGATCACATCAT 58.373 33.333 0.00 0.00 33.51 2.45
3442 6325 9.192642 TCATTTGATTAACAGGATCACATCATT 57.807 29.630 0.00 0.00 33.51 2.57
3445 6328 9.904198 TTTGATTAACAGGATCACATCATTAGA 57.096 29.630 0.00 0.00 33.51 2.10
3446 6329 9.551734 TTGATTAACAGGATCACATCATTAGAG 57.448 33.333 0.00 0.00 33.51 2.43
3447 6330 8.927411 TGATTAACAGGATCACATCATTAGAGA 58.073 33.333 0.00 0.00 0.00 3.10
3448 6331 9.770097 GATTAACAGGATCACATCATTAGAGAA 57.230 33.333 0.00 0.00 0.00 2.87
3450 6333 9.551734 TTAACAGGATCACATCATTAGAGAATG 57.448 33.333 0.00 0.00 43.39 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.979578 ACTTAAATATGTGTTTCAAAATGAGCA 57.020 25.926 0.00 0.00 0.00 4.26
211 244 1.865865 TGGTCTTTTGAGACGAGCAC 58.134 50.000 0.00 0.00 39.57 4.40
361 408 6.765036 TGGGTGTAAAATACGTGAAACTTGTA 59.235 34.615 0.00 0.00 31.75 2.41
449 506 8.141268 TCGGCTTTCTGAAAATAGTGAAATTTT 58.859 29.630 4.18 0.00 40.79 1.82
451 508 7.214467 TCGGCTTTCTGAAAATAGTGAAATT 57.786 32.000 4.18 0.00 0.00 1.82
453 510 6.817765 ATCGGCTTTCTGAAAATAGTGAAA 57.182 33.333 4.18 0.00 0.00 2.69
642 700 3.556633 CCTCTCCATCTCCAAATCCATCG 60.557 52.174 0.00 0.00 0.00 3.84
744 809 2.362760 TCCCACCATGCACATGCC 60.363 61.111 5.06 0.00 41.18 4.40
778 843 6.523201 CAGTATTCTGTTTATTTGGAACACGC 59.477 38.462 0.00 0.00 35.82 5.34
781 846 7.517614 TGCAGTATTCTGTTTATTTGGAACA 57.482 32.000 1.02 0.00 43.05 3.18
914 979 2.397252 GACGCAGCGCATCTCAAC 59.603 61.111 16.61 0.00 0.00 3.18
956 1021 4.700365 TCTCTCACGCACACGCCG 62.700 66.667 0.00 0.00 45.53 6.46
957 1022 2.807045 CTCTCTCACGCACACGCC 60.807 66.667 0.00 0.00 45.53 5.68
958 1023 1.799519 CTCTCTCTCACGCACACGC 60.800 63.158 0.00 0.00 45.53 5.34
1020 3600 3.851128 GAGAGGCCCGGGTACAGC 61.851 72.222 24.63 6.74 0.00 4.40
1301 3881 2.280389 CGCGCATGGAGCATAGGT 60.280 61.111 8.75 0.00 46.13 3.08
1332 3921 0.608130 CATTCGACAGGGAGTCCACA 59.392 55.000 12.30 0.00 44.66 4.17
1485 4090 1.679305 GAGCTCGAGAGGGGTGTCA 60.679 63.158 18.75 0.00 46.25 3.58
1626 4231 0.318784 GCGACTCGAAGGTGTTCACT 60.319 55.000 1.63 0.00 32.36 3.41
1635 4240 2.202676 GCCTCCAGCGACTCGAAG 60.203 66.667 1.63 0.00 0.00 3.79
1858 4463 1.821936 CGATCTCCCTGAGCTGCTT 59.178 57.895 2.53 0.00 0.00 3.91
2520 5294 1.669604 TGCACACAAACATACGGTGT 58.330 45.000 0.00 0.00 45.96 4.16
2554 5328 5.990120 AAGTAAGGTTACGTAGATGGTGT 57.010 39.130 0.00 0.00 38.65 4.16
2574 5348 4.031028 CCGCGAAAATCAGCAAGATTAAG 58.969 43.478 8.23 2.30 46.09 1.85
2576 5350 2.354510 CCCGCGAAAATCAGCAAGATTA 59.645 45.455 8.23 0.00 46.09 1.75
2578 5352 0.734889 CCCGCGAAAATCAGCAAGAT 59.265 50.000 8.23 0.00 39.09 2.40
2579 5353 1.305219 CCCCGCGAAAATCAGCAAGA 61.305 55.000 8.23 0.00 0.00 3.02
2580 5354 1.137404 CCCCGCGAAAATCAGCAAG 59.863 57.895 8.23 0.00 0.00 4.01
2581 5355 1.175983 AACCCCGCGAAAATCAGCAA 61.176 50.000 8.23 0.00 0.00 3.91
2582 5356 1.602323 AACCCCGCGAAAATCAGCA 60.602 52.632 8.23 0.00 0.00 4.41
2583 5357 1.154035 CAACCCCGCGAAAATCAGC 60.154 57.895 8.23 0.00 0.00 4.26
2605 5379 7.563888 TCTGATTAGAAGAGAAAATGGCATG 57.436 36.000 0.00 0.00 0.00 4.06
2606 5380 6.262720 GCTCTGATTAGAAGAGAAAATGGCAT 59.737 38.462 4.66 0.00 43.27 4.40
2622 5396 3.879295 GCTAGTTTGGCATGCTCTGATTA 59.121 43.478 18.92 3.25 0.00 1.75
2633 5407 3.675228 GCTACGTAAGAGCTAGTTTGGCA 60.675 47.826 1.49 0.00 43.62 4.92
2666 5440 2.364324 CGGGCTTTGCTACATCTACCTA 59.636 50.000 0.00 0.00 0.00 3.08
2667 5441 1.139058 CGGGCTTTGCTACATCTACCT 59.861 52.381 0.00 0.00 0.00 3.08
2668 5442 1.134491 ACGGGCTTTGCTACATCTACC 60.134 52.381 0.00 0.00 0.00 3.18
2808 5621 2.479560 CGACACATTGATCTCGGTAGCA 60.480 50.000 0.00 0.00 0.00 3.49
2906 5760 5.823570 TGTGAACGGAAGGAGTTTTTGATTA 59.176 36.000 0.00 0.00 31.14 1.75
2913 5767 5.414765 GGATATTTGTGAACGGAAGGAGTTT 59.585 40.000 0.00 0.00 31.14 2.66
3024 5878 4.682778 TGTAAGGTTTGTAGAGCACACT 57.317 40.909 0.00 0.00 36.69 3.55
3077 5931 9.727859 TCATGTTACTTAACTAGTTATTTGCCA 57.272 29.630 15.92 10.67 38.33 4.92
3107 5964 7.443575 GGCTATTTATCACTCACAGTCATTGAT 59.556 37.037 0.00 0.00 0.00 2.57
3108 5965 6.763135 GGCTATTTATCACTCACAGTCATTGA 59.237 38.462 0.00 0.00 0.00 2.57
3109 5966 6.017605 GGGCTATTTATCACTCACAGTCATTG 60.018 42.308 0.00 0.00 0.00 2.82
3111 5968 5.130975 TGGGCTATTTATCACTCACAGTCAT 59.869 40.000 0.00 0.00 0.00 3.06
3113 5970 5.023533 TGGGCTATTTATCACTCACAGTC 57.976 43.478 0.00 0.00 0.00 3.51
3114 5971 4.141620 CCTGGGCTATTTATCACTCACAGT 60.142 45.833 0.00 0.00 0.00 3.55
3194 6077 7.231519 AGGGCATATTTCCTTTATTTCTACAGC 59.768 37.037 0.00 0.00 0.00 4.40
3195 6078 8.697507 AGGGCATATTTCCTTTATTTCTACAG 57.302 34.615 0.00 0.00 0.00 2.74
3206 6089 5.975988 TTGACTCTAGGGCATATTTCCTT 57.024 39.130 0.00 0.00 34.75 3.36
3207 6090 7.633018 TTATTGACTCTAGGGCATATTTCCT 57.367 36.000 0.00 0.00 37.18 3.36
3208 6091 9.959721 TTATTATTGACTCTAGGGCATATTTCC 57.040 33.333 0.00 0.00 30.17 3.13
3214 6097 9.646522 ACAATTTTATTATTGACTCTAGGGCAT 57.353 29.630 0.00 0.00 38.56 4.40
3215 6098 9.474313 AACAATTTTATTATTGACTCTAGGGCA 57.526 29.630 0.00 0.00 38.56 5.36
3276 6159 9.214957 CCGGTTAATACAATTCTAGCATGAATA 57.785 33.333 0.00 0.00 35.82 1.75
3277 6160 7.936847 TCCGGTTAATACAATTCTAGCATGAAT 59.063 33.333 0.00 0.00 38.19 2.57
3278 6161 7.276658 TCCGGTTAATACAATTCTAGCATGAA 58.723 34.615 0.00 0.00 0.00 2.57
3279 6162 6.822442 TCCGGTTAATACAATTCTAGCATGA 58.178 36.000 0.00 0.00 0.00 3.07
3280 6163 7.490962 TTCCGGTTAATACAATTCTAGCATG 57.509 36.000 0.00 0.00 0.00 4.06
3281 6164 7.773690 AGTTTCCGGTTAATACAATTCTAGCAT 59.226 33.333 0.00 0.00 0.00 3.79
3282 6165 7.107542 AGTTTCCGGTTAATACAATTCTAGCA 58.892 34.615 0.00 0.00 0.00 3.49
3283 6166 7.549615 AGTTTCCGGTTAATACAATTCTAGC 57.450 36.000 0.00 0.00 0.00 3.42
3288 6171 9.723601 TGTACTAAGTTTCCGGTTAATACAATT 57.276 29.630 0.00 0.00 0.00 2.32
3289 6172 9.895138 ATGTACTAAGTTTCCGGTTAATACAAT 57.105 29.630 0.00 0.00 28.05 2.71
3290 6173 9.153721 CATGTACTAAGTTTCCGGTTAATACAA 57.846 33.333 0.00 0.00 28.05 2.41
3291 6174 8.313292 ACATGTACTAAGTTTCCGGTTAATACA 58.687 33.333 0.00 3.81 28.60 2.29
3292 6175 8.598075 CACATGTACTAAGTTTCCGGTTAATAC 58.402 37.037 0.00 0.00 0.00 1.89
3293 6176 8.313292 ACACATGTACTAAGTTTCCGGTTAATA 58.687 33.333 0.00 0.00 0.00 0.98
3294 6177 7.118680 CACACATGTACTAAGTTTCCGGTTAAT 59.881 37.037 0.00 0.00 0.00 1.40
3295 6178 6.424509 CACACATGTACTAAGTTTCCGGTTAA 59.575 38.462 0.00 0.00 0.00 2.01
3296 6179 5.927689 CACACATGTACTAAGTTTCCGGTTA 59.072 40.000 0.00 0.00 0.00 2.85
3297 6180 4.753107 CACACATGTACTAAGTTTCCGGTT 59.247 41.667 0.00 0.00 0.00 4.44
3298 6181 4.039488 TCACACATGTACTAAGTTTCCGGT 59.961 41.667 0.00 0.00 0.00 5.28
3299 6182 4.562082 TCACACATGTACTAAGTTTCCGG 58.438 43.478 0.00 0.00 0.00 5.14
3300 6183 6.721571 ATTCACACATGTACTAAGTTTCCG 57.278 37.500 0.00 0.00 0.00 4.30
3301 6184 8.542497 TGTATTCACACATGTACTAAGTTTCC 57.458 34.615 0.00 0.00 0.00 3.13
3309 6192 9.151471 GTTTGTCTATGTATTCACACATGTACT 57.849 33.333 0.00 0.00 39.46 2.73
3310 6193 8.931775 TGTTTGTCTATGTATTCACACATGTAC 58.068 33.333 0.00 0.00 39.46 2.90
3311 6194 9.150348 CTGTTTGTCTATGTATTCACACATGTA 57.850 33.333 0.00 0.00 39.46 2.29
3312 6195 7.877612 TCTGTTTGTCTATGTATTCACACATGT 59.122 33.333 0.00 0.00 39.46 3.21
3313 6196 8.255394 TCTGTTTGTCTATGTATTCACACATG 57.745 34.615 0.00 0.00 39.46 3.21
3314 6197 8.846943 TTCTGTTTGTCTATGTATTCACACAT 57.153 30.769 0.00 0.00 41.88 3.21
3315 6198 8.720562 CATTCTGTTTGTCTATGTATTCACACA 58.279 33.333 0.00 0.00 37.54 3.72
3316 6199 8.721478 ACATTCTGTTTGTCTATGTATTCACAC 58.279 33.333 0.00 0.00 37.54 3.82
3317 6200 8.846943 ACATTCTGTTTGTCTATGTATTCACA 57.153 30.769 0.00 0.00 39.52 3.58
3318 6201 8.935844 TGACATTCTGTTTGTCTATGTATTCAC 58.064 33.333 11.79 0.00 43.12 3.18
3319 6202 8.935844 GTGACATTCTGTTTGTCTATGTATTCA 58.064 33.333 11.79 0.00 43.12 2.57
3320 6203 9.155975 AGTGACATTCTGTTTGTCTATGTATTC 57.844 33.333 11.79 0.00 43.12 1.75
3322 6205 9.809096 CTAGTGACATTCTGTTTGTCTATGTAT 57.191 33.333 11.79 0.00 43.12 2.29
3323 6206 8.803235 ACTAGTGACATTCTGTTTGTCTATGTA 58.197 33.333 0.00 1.96 43.12 2.29
3324 6207 7.671302 ACTAGTGACATTCTGTTTGTCTATGT 58.329 34.615 0.00 0.00 43.12 2.29
3325 6208 9.809096 ATACTAGTGACATTCTGTTTGTCTATG 57.191 33.333 5.39 0.00 43.12 2.23
3326 6209 9.809096 CATACTAGTGACATTCTGTTTGTCTAT 57.191 33.333 5.39 5.52 43.12 1.98
3327 6210 7.759886 GCATACTAGTGACATTCTGTTTGTCTA 59.240 37.037 5.39 0.00 43.12 2.59
3328 6211 6.591834 GCATACTAGTGACATTCTGTTTGTCT 59.408 38.462 5.39 0.00 43.12 3.41
3329 6212 6.183360 GGCATACTAGTGACATTCTGTTTGTC 60.183 42.308 5.39 0.00 43.04 3.18
3330 6213 5.643777 GGCATACTAGTGACATTCTGTTTGT 59.356 40.000 5.39 0.00 0.00 2.83
3331 6214 5.877012 AGGCATACTAGTGACATTCTGTTTG 59.123 40.000 5.39 0.00 0.00 2.93
3332 6215 6.054860 AGGCATACTAGTGACATTCTGTTT 57.945 37.500 5.39 0.00 0.00 2.83
3333 6216 5.423610 AGAGGCATACTAGTGACATTCTGTT 59.576 40.000 5.39 0.00 0.00 3.16
3334 6217 4.959210 AGAGGCATACTAGTGACATTCTGT 59.041 41.667 5.39 0.00 0.00 3.41
3335 6218 5.528043 AGAGGCATACTAGTGACATTCTG 57.472 43.478 5.39 0.00 0.00 3.02
3336 6219 6.369629 AGTAGAGGCATACTAGTGACATTCT 58.630 40.000 5.39 6.02 34.21 2.40
3337 6220 6.642707 AGTAGAGGCATACTAGTGACATTC 57.357 41.667 5.39 0.00 34.21 2.67
3338 6221 6.607600 TCAAGTAGAGGCATACTAGTGACATT 59.392 38.462 5.39 0.00 34.90 2.71
3339 6222 6.039941 GTCAAGTAGAGGCATACTAGTGACAT 59.960 42.308 19.41 0.00 40.28 3.06
3340 6223 5.357314 GTCAAGTAGAGGCATACTAGTGACA 59.643 44.000 19.41 0.00 40.28 3.58
3341 6224 5.591067 AGTCAAGTAGAGGCATACTAGTGAC 59.409 44.000 17.97 17.97 40.57 3.67
3342 6225 5.756918 AGTCAAGTAGAGGCATACTAGTGA 58.243 41.667 5.39 2.59 34.90 3.41
3343 6226 6.293735 GCTAGTCAAGTAGAGGCATACTAGTG 60.294 46.154 5.39 0.00 38.02 2.74
3344 6227 5.766174 GCTAGTCAAGTAGAGGCATACTAGT 59.234 44.000 0.00 0.00 38.02 2.57
3345 6228 6.001460 AGCTAGTCAAGTAGAGGCATACTAG 58.999 44.000 0.00 0.00 38.50 2.57
3346 6229 5.942961 AGCTAGTCAAGTAGAGGCATACTA 58.057 41.667 3.23 0.00 34.90 1.82
3347 6230 4.798882 AGCTAGTCAAGTAGAGGCATACT 58.201 43.478 0.00 0.00 37.61 2.12
3348 6231 4.319911 CGAGCTAGTCAAGTAGAGGCATAC 60.320 50.000 0.00 0.00 0.00 2.39
3349 6232 3.815962 CGAGCTAGTCAAGTAGAGGCATA 59.184 47.826 0.00 0.00 0.00 3.14
3350 6233 2.621055 CGAGCTAGTCAAGTAGAGGCAT 59.379 50.000 0.00 0.00 0.00 4.40
3351 6234 2.017782 CGAGCTAGTCAAGTAGAGGCA 58.982 52.381 0.00 0.00 0.00 4.75
3352 6235 2.018515 ACGAGCTAGTCAAGTAGAGGC 58.981 52.381 0.00 0.00 0.00 4.70
3353 6236 3.690139 TCAACGAGCTAGTCAAGTAGAGG 59.310 47.826 0.00 0.00 0.00 3.69
3354 6237 4.948608 TCAACGAGCTAGTCAAGTAGAG 57.051 45.455 0.00 0.00 0.00 2.43
3355 6238 5.414765 TGATTCAACGAGCTAGTCAAGTAGA 59.585 40.000 0.00 0.00 0.00 2.59
3356 6239 5.641709 TGATTCAACGAGCTAGTCAAGTAG 58.358 41.667 0.00 0.00 0.00 2.57
3357 6240 5.638596 TGATTCAACGAGCTAGTCAAGTA 57.361 39.130 0.00 0.00 0.00 2.24
3358 6241 4.521130 TGATTCAACGAGCTAGTCAAGT 57.479 40.909 0.00 0.00 0.00 3.16
3359 6242 6.414408 AATTGATTCAACGAGCTAGTCAAG 57.586 37.500 0.00 0.00 0.00 3.02
3360 6243 7.011389 CCATAATTGATTCAACGAGCTAGTCAA 59.989 37.037 0.00 0.17 0.00 3.18
3361 6244 6.479990 CCATAATTGATTCAACGAGCTAGTCA 59.520 38.462 0.00 0.00 0.00 3.41
3362 6245 6.480320 ACCATAATTGATTCAACGAGCTAGTC 59.520 38.462 0.00 0.00 0.00 2.59
3363 6246 6.349300 ACCATAATTGATTCAACGAGCTAGT 58.651 36.000 0.15 0.00 0.00 2.57
3364 6247 6.851222 ACCATAATTGATTCAACGAGCTAG 57.149 37.500 0.15 0.00 0.00 3.42
3365 6248 8.773645 CATAACCATAATTGATTCAACGAGCTA 58.226 33.333 0.15 0.00 0.00 3.32
3366 6249 7.283127 ACATAACCATAATTGATTCAACGAGCT 59.717 33.333 0.15 0.00 0.00 4.09
3367 6250 7.417612 ACATAACCATAATTGATTCAACGAGC 58.582 34.615 0.15 0.00 0.00 5.03
3368 6251 9.787532 AAACATAACCATAATTGATTCAACGAG 57.212 29.630 0.15 0.00 0.00 4.18
3369 6252 9.781834 GAAACATAACCATAATTGATTCAACGA 57.218 29.630 0.15 0.00 0.00 3.85
3370 6253 9.019764 GGAAACATAACCATAATTGATTCAACG 57.980 33.333 0.15 0.00 0.00 4.10
3371 6254 9.868277 TGGAAACATAACCATAATTGATTCAAC 57.132 29.630 0.15 0.00 33.40 3.18
3375 6258 9.665719 GGTTTGGAAACATAACCATAATTGATT 57.334 29.630 4.71 0.00 44.21 2.57
3376 6259 8.820831 TGGTTTGGAAACATAACCATAATTGAT 58.179 29.630 0.00 0.00 46.70 2.57
3377 6260 8.195165 TGGTTTGGAAACATAACCATAATTGA 57.805 30.769 0.00 0.00 46.70 2.57
3385 6268 6.827586 TGTCTATGGTTTGGAAACATAACC 57.172 37.500 4.71 0.00 44.63 2.85
3386 6269 8.050778 TCATGTCTATGGTTTGGAAACATAAC 57.949 34.615 4.71 4.14 40.63 1.89
3387 6270 7.888021 ACTCATGTCTATGGTTTGGAAACATAA 59.112 33.333 4.71 0.00 40.63 1.90
3388 6271 7.402054 ACTCATGTCTATGGTTTGGAAACATA 58.598 34.615 4.71 0.86 40.63 2.29
3389 6272 6.248433 ACTCATGTCTATGGTTTGGAAACAT 58.752 36.000 4.71 0.00 40.63 2.71
3390 6273 5.630121 ACTCATGTCTATGGTTTGGAAACA 58.370 37.500 4.71 0.00 40.63 2.83
3391 6274 6.016276 ACAACTCATGTCTATGGTTTGGAAAC 60.016 38.462 0.00 0.00 37.96 2.78
3392 6275 6.068010 ACAACTCATGTCTATGGTTTGGAAA 58.932 36.000 0.00 0.00 37.96 3.13
3393 6276 5.630121 ACAACTCATGTCTATGGTTTGGAA 58.370 37.500 0.00 0.00 37.96 3.53
3394 6277 5.241403 ACAACTCATGTCTATGGTTTGGA 57.759 39.130 0.00 0.00 37.96 3.53
3407 6290 7.819644 TCCTGTTAATCAAATGACAACTCATG 58.180 34.615 9.72 0.00 37.20 3.07
3408 6291 8.585471 ATCCTGTTAATCAAATGACAACTCAT 57.415 30.769 9.72 0.00 38.94 2.90
3409 6292 7.665145 TGATCCTGTTAATCAAATGACAACTCA 59.335 33.333 9.72 4.49 30.37 3.41
3410 6293 7.965107 GTGATCCTGTTAATCAAATGACAACTC 59.035 37.037 9.72 2.69 35.04 3.01
3411 6294 7.448161 TGTGATCCTGTTAATCAAATGACAACT 59.552 33.333 9.72 0.00 35.04 3.16
3412 6295 7.592938 TGTGATCCTGTTAATCAAATGACAAC 58.407 34.615 0.00 3.83 35.04 3.32
3413 6296 7.757941 TGTGATCCTGTTAATCAAATGACAA 57.242 32.000 0.00 0.00 35.04 3.18
3414 6297 7.611079 TGATGTGATCCTGTTAATCAAATGACA 59.389 33.333 0.00 0.00 32.39 3.58
3415 6298 7.988737 TGATGTGATCCTGTTAATCAAATGAC 58.011 34.615 0.00 0.00 32.39 3.06
3416 6299 8.756486 ATGATGTGATCCTGTTAATCAAATGA 57.244 30.769 0.00 0.00 32.39 2.57
3419 6302 9.904198 TCTAATGATGTGATCCTGTTAATCAAA 57.096 29.630 0.00 0.00 35.04 2.69
3420 6303 9.551734 CTCTAATGATGTGATCCTGTTAATCAA 57.448 33.333 0.00 0.00 35.04 2.57
3421 6304 8.927411 TCTCTAATGATGTGATCCTGTTAATCA 58.073 33.333 0.00 0.00 0.00 2.57
3422 6305 9.770097 TTCTCTAATGATGTGATCCTGTTAATC 57.230 33.333 0.00 0.00 0.00 1.75
3424 6307 9.551734 CATTCTCTAATGATGTGATCCTGTTAA 57.448 33.333 0.00 0.00 44.50 2.01
3425 6308 8.927411 TCATTCTCTAATGATGTGATCCTGTTA 58.073 33.333 0.00 0.00 45.17 2.41
3426 6309 7.799081 TCATTCTCTAATGATGTGATCCTGTT 58.201 34.615 0.00 0.00 45.17 3.16
3427 6310 7.370905 TCATTCTCTAATGATGTGATCCTGT 57.629 36.000 0.00 0.00 45.17 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.