Multiple sequence alignment - TraesCS6A01G326700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G326700 chr6A 100.000 2019 0 0 1 2019 560133947 560131929 0.000000e+00 3729.0
1 TraesCS6A01G326700 chr6A 93.390 711 45 1 854 1564 560478848 560479556 0.000000e+00 1051.0
2 TraesCS6A01G326700 chr6A 93.108 711 47 1 854 1564 560407081 560407789 0.000000e+00 1040.0
3 TraesCS6A01G326700 chr6A 88.837 851 74 12 693 1531 560544185 560545026 0.000000e+00 1026.0
4 TraesCS6A01G326700 chr6A 93.771 594 37 0 854 1447 560359095 560359688 0.000000e+00 893.0
5 TraesCS6A01G326700 chr6A 100.000 164 0 0 2362 2525 560131586 560131423 1.130000e-78 303.0
6 TraesCS6A01G326700 chr6A 84.818 303 20 9 50 351 560522864 560523141 5.320000e-72 281.0
7 TraesCS6A01G326700 chr6A 84.158 303 21 12 50 351 560355482 560355758 4.140000e-68 268.0
8 TraesCS6A01G326700 chr6A 84.158 303 21 12 50 351 560396839 560397115 4.140000e-68 268.0
9 TraesCS6A01G326700 chr6A 84.158 303 21 12 50 351 560402878 560403154 4.140000e-68 268.0
10 TraesCS6A01G326700 chr6A 84.158 303 21 12 50 351 560405076 560405352 4.140000e-68 268.0
11 TraesCS6A01G326700 chr6A 83.828 303 23 10 50 351 560478323 560478600 5.360000e-67 265.0
12 TraesCS6A01G326700 chr6A 91.964 112 9 0 688 799 560358972 560359083 9.350000e-35 158.0
13 TraesCS6A01G326700 chr6A 91.964 112 9 0 688 799 560400338 560400449 9.350000e-35 158.0
14 TraesCS6A01G326700 chr6A 91.964 112 9 0 688 799 560406958 560407069 9.350000e-35 158.0
15 TraesCS6A01G326700 chr6A 91.071 112 10 0 688 799 560478725 560478836 4.350000e-33 152.0
16 TraesCS6A01G326700 chr6A 91.071 112 10 0 688 799 560523266 560523377 4.350000e-33 152.0
17 TraesCS6A01G326700 chr6A 81.197 117 20 2 540 654 560478602 560478718 2.670000e-15 93.5
18 TraesCS6A01G326700 chr6A 81.197 117 20 2 540 654 560523143 560523259 2.670000e-15 93.5
19 TraesCS6A01G326700 chr6A 100.000 30 0 0 540 569 560355760 560355789 3.510000e-04 56.5
20 TraesCS6A01G326700 chr6A 100.000 30 0 0 540 569 560397117 560397146 3.510000e-04 56.5
21 TraesCS6A01G326700 chr6A 100.000 30 0 0 540 569 560403156 560403185 3.510000e-04 56.5
22 TraesCS6A01G326700 chr6A 100.000 30 0 0 540 569 560405354 560405383 3.510000e-04 56.5
23 TraesCS6A01G326700 chr6B 93.652 961 49 6 688 1643 626807948 626808901 0.000000e+00 1426.0
24 TraesCS6A01G326700 chr6B 87.032 1095 73 22 744 1818 626463299 626462254 0.000000e+00 1171.0
25 TraesCS6A01G326700 chr6B 90.952 851 69 3 691 1538 626593700 626592855 0.000000e+00 1138.0
26 TraesCS6A01G326700 chr6B 88.903 802 64 12 858 1643 626819114 626819906 0.000000e+00 965.0
27 TraesCS6A01G326700 chr6B 83.881 335 33 9 10 332 626594417 626594092 1.470000e-77 300.0
28 TraesCS6A01G326700 chr6B 86.099 223 14 9 1804 2019 626459717 626459505 9.090000e-55 224.0
29 TraesCS6A01G326700 chr6B 98.182 55 1 0 600 654 626593764 626593710 2.070000e-16 97.1
30 TraesCS6A01G326700 chr6B 97.727 44 1 0 540 583 626594095 626594052 2.690000e-10 76.8
31 TraesCS6A01G326700 chr6B 95.455 44 2 0 540 583 626807837 626807880 1.250000e-08 71.3
32 TraesCS6A01G326700 chr6D 86.545 1256 114 37 693 1923 417888142 417889367 0.000000e+00 1332.0
33 TraesCS6A01G326700 chr6D 93.696 460 20 3 540 991 417715756 417715298 0.000000e+00 680.0
34 TraesCS6A01G326700 chr6D 92.737 358 18 7 3 353 417716112 417715756 6.230000e-141 510.0
35 TraesCS6A01G326700 chr6D 86.592 358 26 12 3 353 417761528 417761870 2.370000e-100 375.0
36 TraesCS6A01G326700 chr6D 88.667 150 10 2 688 837 417761994 417762136 2.580000e-40 176.0
37 TraesCS6A01G326700 chr6D 98.387 62 1 0 1891 1952 417715248 417715187 2.660000e-20 110.0
38 TraesCS6A01G326700 chr7A 97.326 187 5 0 354 540 194051475 194051289 4.050000e-83 318.0
39 TraesCS6A01G326700 chr7A 95.135 185 9 0 356 540 594414209 594414025 2.460000e-75 292.0
40 TraesCS6A01G326700 chr7B 94.975 199 7 3 343 540 526844672 526844868 2.440000e-80 309.0
41 TraesCS6A01G326700 chr1B 96.216 185 6 1 356 540 12257692 12257509 4.080000e-78 302.0
42 TraesCS6A01G326700 chr1B 95.187 187 9 0 354 540 374036244 374036058 1.900000e-76 296.0
43 TraesCS6A01G326700 chr4A 94.709 189 9 1 352 540 494072469 494072656 2.460000e-75 292.0
44 TraesCS6A01G326700 chr2B 94.652 187 9 1 354 540 517750900 517750715 3.180000e-74 289.0
45 TraesCS6A01G326700 chr2A 94.624 186 10 0 354 539 459445259 459445444 3.180000e-74 289.0
46 TraesCS6A01G326700 chr5A 94.652 187 7 3 354 540 31508360 31508543 1.140000e-73 287.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G326700 chr6A 560131423 560133947 2524 True 2016.000000 3729 100.000000 1 2525 2 chr6A.!!$R1 2524
1 TraesCS6A01G326700 chr6A 560544185 560545026 841 False 1026.000000 1026 88.837000 693 1531 1 chr6A.!!$F1 838
2 TraesCS6A01G326700 chr6A 560478323 560479556 1233 False 390.375000 1051 87.371500 50 1564 4 chr6A.!!$F4 1514
3 TraesCS6A01G326700 chr6A 560355482 560359688 4206 False 343.875000 893 92.473250 50 1447 4 chr6A.!!$F2 1397
4 TraesCS6A01G326700 chr6A 560396839 560407789 10950 False 258.833333 1040 92.167778 50 1564 9 chr6A.!!$F3 1514
5 TraesCS6A01G326700 chr6B 626819114 626819906 792 False 965.000000 965 88.903000 858 1643 1 chr6B.!!$F1 785
6 TraesCS6A01G326700 chr6B 626807837 626808901 1064 False 748.650000 1426 94.553500 540 1643 2 chr6B.!!$F2 1103
7 TraesCS6A01G326700 chr6B 626459505 626463299 3794 True 697.500000 1171 86.565500 744 2019 2 chr6B.!!$R1 1275
8 TraesCS6A01G326700 chr6B 626592855 626594417 1562 True 402.975000 1138 92.685500 10 1538 4 chr6B.!!$R2 1528
9 TraesCS6A01G326700 chr6D 417888142 417889367 1225 False 1332.000000 1332 86.545000 693 1923 1 chr6D.!!$F1 1230
10 TraesCS6A01G326700 chr6D 417715187 417716112 925 True 433.333333 680 94.940000 3 1952 3 chr6D.!!$R1 1949
11 TraesCS6A01G326700 chr6D 417761528 417762136 608 False 275.500000 375 87.629500 3 837 2 chr6D.!!$F2 834

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
689 10464 0.034477 TGGATTTCCGAGAAAGCCCC 60.034 55.0 22.5 14.6 39.43 5.8 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2500 14909 0.027716 GCAGCGACATCAAGCATGAG 59.972 55.0 0.0 0.0 39.39 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 0.322975 TCACTTGAAGAGCTGGCTCC 59.677 55.000 17.60 5.59 43.70 4.70
44 55 1.768684 TTGAAGAGCTGGCTCCCGTT 61.769 55.000 17.60 7.06 43.70 4.44
113 125 1.068588 TCGGCCCATCTCTATTGTTCG 59.931 52.381 0.00 0.00 0.00 3.95
120 132 4.369182 CCATCTCTATTGTTCGTGGTACC 58.631 47.826 4.43 4.43 0.00 3.34
179 192 1.215673 CCTGTCTACCCTCTAGCTCCA 59.784 57.143 0.00 0.00 0.00 3.86
210 230 4.514816 GCTAGGCCATTTTGCAAAAGAAAA 59.485 37.500 27.08 6.86 0.00 2.29
212 232 3.884693 AGGCCATTTTGCAAAAGAAAAGG 59.115 39.130 27.08 21.89 0.00 3.11
214 234 4.261155 GGCCATTTTGCAAAAGAAAAGGTC 60.261 41.667 27.08 19.95 0.00 3.85
216 236 5.163673 GCCATTTTGCAAAAGAAAAGGTCAA 60.164 36.000 27.08 2.63 0.00 3.18
353 397 2.868662 CTATCCGAGTCGTATGCATGG 58.131 52.381 10.16 0.00 0.00 3.66
354 398 0.318441 ATCCGAGTCGTATGCATGGG 59.682 55.000 10.16 0.43 0.00 4.00
355 399 0.753848 TCCGAGTCGTATGCATGGGA 60.754 55.000 10.16 3.22 0.00 4.37
356 400 0.104120 CCGAGTCGTATGCATGGGAA 59.896 55.000 10.16 0.00 0.00 3.97
357 401 1.472552 CCGAGTCGTATGCATGGGAAA 60.473 52.381 10.16 0.00 0.00 3.13
358 402 2.276201 CGAGTCGTATGCATGGGAAAA 58.724 47.619 10.16 0.00 0.00 2.29
359 403 2.675844 CGAGTCGTATGCATGGGAAAAA 59.324 45.455 10.16 0.00 0.00 1.94
382 426 8.794335 AAAAATTCTATAAGACCAGGTCTCAC 57.206 34.615 23.17 0.00 42.59 3.51
383 427 5.776173 ATTCTATAAGACCAGGTCTCACG 57.224 43.478 23.17 11.45 42.59 4.35
384 428 3.552875 TCTATAAGACCAGGTCTCACGG 58.447 50.000 23.17 13.19 42.59 4.94
385 429 2.233305 ATAAGACCAGGTCTCACGGT 57.767 50.000 23.17 9.25 42.59 4.83
386 430 2.005370 TAAGACCAGGTCTCACGGTT 57.995 50.000 23.17 8.49 42.59 4.44
387 431 1.129058 AAGACCAGGTCTCACGGTTT 58.871 50.000 23.17 1.89 42.59 3.27
388 432 2.005370 AGACCAGGTCTCACGGTTTA 57.995 50.000 17.31 0.00 38.71 2.01
389 433 1.893801 AGACCAGGTCTCACGGTTTAG 59.106 52.381 17.31 0.00 38.71 1.85
390 434 0.320697 ACCAGGTCTCACGGTTTAGC 59.679 55.000 0.00 0.00 0.00 3.09
391 435 0.320374 CCAGGTCTCACGGTTTAGCA 59.680 55.000 0.00 0.00 0.00 3.49
392 436 1.673033 CCAGGTCTCACGGTTTAGCAG 60.673 57.143 0.00 0.00 0.00 4.24
393 437 0.608640 AGGTCTCACGGTTTAGCAGG 59.391 55.000 0.00 0.00 0.00 4.85
394 438 0.320697 GGTCTCACGGTTTAGCAGGT 59.679 55.000 0.00 0.00 0.00 4.00
395 439 1.429463 GTCTCACGGTTTAGCAGGTG 58.571 55.000 0.00 0.00 0.00 4.00
396 440 1.000506 GTCTCACGGTTTAGCAGGTGA 59.999 52.381 0.00 0.00 37.77 4.02
397 441 3.906660 TCACGGTTTAGCAGGTGAG 57.093 52.632 0.00 0.00 34.71 3.51
398 442 1.334160 TCACGGTTTAGCAGGTGAGA 58.666 50.000 0.00 0.00 34.71 3.27
399 443 1.000506 TCACGGTTTAGCAGGTGAGAC 59.999 52.381 0.00 0.00 34.71 3.36
400 444 0.320697 ACGGTTTAGCAGGTGAGACC 59.679 55.000 0.00 0.00 38.99 3.85
401 445 0.391263 CGGTTTAGCAGGTGAGACCC 60.391 60.000 0.00 0.00 39.75 4.46
402 446 0.690762 GGTTTAGCAGGTGAGACCCA 59.309 55.000 0.00 0.00 39.75 4.51
403 447 1.282157 GGTTTAGCAGGTGAGACCCAT 59.718 52.381 0.00 0.00 39.75 4.00
404 448 2.633488 GTTTAGCAGGTGAGACCCATC 58.367 52.381 0.00 0.00 39.75 3.51
405 449 2.237392 GTTTAGCAGGTGAGACCCATCT 59.763 50.000 0.00 0.00 39.75 2.90
406 450 2.254152 TAGCAGGTGAGACCCATCTT 57.746 50.000 0.00 0.00 39.75 2.40
407 451 0.617413 AGCAGGTGAGACCCATCTTG 59.383 55.000 0.00 0.00 39.75 3.02
408 452 0.615331 GCAGGTGAGACCCATCTTGA 59.385 55.000 0.00 0.00 39.75 3.02
409 453 1.211457 GCAGGTGAGACCCATCTTGAT 59.789 52.381 0.00 0.00 39.75 2.57
410 454 2.915349 CAGGTGAGACCCATCTTGATG 58.085 52.381 3.77 3.77 39.75 3.07
411 455 1.842562 AGGTGAGACCCATCTTGATGG 59.157 52.381 19.73 19.73 39.75 3.51
412 456 1.839994 GGTGAGACCCATCTTGATGGA 59.160 52.381 26.19 7.41 44.39 3.41
413 457 2.441001 GGTGAGACCCATCTTGATGGAT 59.559 50.000 26.19 13.41 44.39 3.41
414 458 3.474600 GTGAGACCCATCTTGATGGATG 58.525 50.000 26.19 15.20 44.39 3.51
415 459 3.135348 GTGAGACCCATCTTGATGGATGA 59.865 47.826 26.19 7.60 44.01 2.92
416 460 3.135348 TGAGACCCATCTTGATGGATGAC 59.865 47.826 26.19 16.12 44.01 3.06
417 461 3.117745 AGACCCATCTTGATGGATGACA 58.882 45.455 26.19 0.00 44.01 3.58
418 462 3.118112 AGACCCATCTTGATGGATGACAC 60.118 47.826 26.19 12.60 44.01 3.67
419 463 2.216046 CCCATCTTGATGGATGACACG 58.784 52.381 26.19 7.99 44.01 4.49
420 464 2.420547 CCCATCTTGATGGATGACACGT 60.421 50.000 26.19 0.00 44.01 4.49
421 465 2.610833 CCATCTTGATGGATGACACGTG 59.389 50.000 21.56 15.48 44.01 4.49
422 466 2.385013 TCTTGATGGATGACACGTGG 57.615 50.000 21.57 1.66 0.00 4.94
423 467 0.729116 CTTGATGGATGACACGTGGC 59.271 55.000 21.57 19.24 0.00 5.01
424 468 0.036022 TTGATGGATGACACGTGGCA 59.964 50.000 29.28 29.28 37.54 4.92
426 470 1.339920 TGATGGATGACACGTGGCATT 60.340 47.619 36.07 22.11 45.42 3.56
427 471 1.745087 GATGGATGACACGTGGCATTT 59.255 47.619 36.07 23.79 45.42 2.32
428 472 2.481289 TGGATGACACGTGGCATTTA 57.519 45.000 36.07 24.74 45.42 1.40
429 473 2.080693 TGGATGACACGTGGCATTTAC 58.919 47.619 36.07 27.36 45.42 2.01
430 474 2.080693 GGATGACACGTGGCATTTACA 58.919 47.619 36.07 9.07 45.42 2.41
431 475 2.486203 GGATGACACGTGGCATTTACAA 59.514 45.455 36.07 8.22 45.42 2.41
432 476 3.057876 GGATGACACGTGGCATTTACAAA 60.058 43.478 36.07 7.37 45.42 2.83
433 477 4.380444 GGATGACACGTGGCATTTACAAAT 60.380 41.667 36.07 14.34 45.42 2.32
434 478 4.153958 TGACACGTGGCATTTACAAATC 57.846 40.909 23.03 3.54 0.00 2.17
435 479 3.565902 TGACACGTGGCATTTACAAATCA 59.434 39.130 23.03 6.48 0.00 2.57
436 480 3.896122 ACACGTGGCATTTACAAATCAC 58.104 40.909 21.57 0.00 0.00 3.06
437 481 3.316588 ACACGTGGCATTTACAAATCACA 59.683 39.130 21.57 0.00 0.00 3.58
438 482 4.202060 ACACGTGGCATTTACAAATCACAA 60.202 37.500 21.57 0.00 0.00 3.33
439 483 4.742167 CACGTGGCATTTACAAATCACAAA 59.258 37.500 7.95 0.00 0.00 2.83
440 484 4.981674 ACGTGGCATTTACAAATCACAAAG 59.018 37.500 0.00 1.71 0.00 2.77
441 485 4.143347 CGTGGCATTTACAAATCACAAAGC 60.143 41.667 0.00 0.00 0.00 3.51
442 486 4.749099 GTGGCATTTACAAATCACAAAGCA 59.251 37.500 0.00 0.00 0.00 3.91
443 487 5.409214 GTGGCATTTACAAATCACAAAGCAT 59.591 36.000 0.00 0.00 0.00 3.79
444 488 5.638657 TGGCATTTACAAATCACAAAGCATC 59.361 36.000 0.00 0.00 0.00 3.91
445 489 5.870978 GGCATTTACAAATCACAAAGCATCT 59.129 36.000 0.00 0.00 0.00 2.90
446 490 7.035004 GGCATTTACAAATCACAAAGCATCTA 58.965 34.615 0.00 0.00 0.00 1.98
447 491 7.009540 GGCATTTACAAATCACAAAGCATCTAC 59.990 37.037 0.00 0.00 0.00 2.59
448 492 7.009540 GCATTTACAAATCACAAAGCATCTACC 59.990 37.037 0.00 0.00 0.00 3.18
449 493 6.509418 TTACAAATCACAAAGCATCTACCC 57.491 37.500 0.00 0.00 0.00 3.69
450 494 4.666512 ACAAATCACAAAGCATCTACCCT 58.333 39.130 0.00 0.00 0.00 4.34
451 495 5.815581 ACAAATCACAAAGCATCTACCCTA 58.184 37.500 0.00 0.00 0.00 3.53
452 496 6.426587 ACAAATCACAAAGCATCTACCCTAT 58.573 36.000 0.00 0.00 0.00 2.57
453 497 6.543831 ACAAATCACAAAGCATCTACCCTATC 59.456 38.462 0.00 0.00 0.00 2.08
454 498 4.689612 TCACAAAGCATCTACCCTATCC 57.310 45.455 0.00 0.00 0.00 2.59
455 499 3.391296 TCACAAAGCATCTACCCTATCCC 59.609 47.826 0.00 0.00 0.00 3.85
456 500 2.711547 ACAAAGCATCTACCCTATCCCC 59.288 50.000 0.00 0.00 0.00 4.81
457 501 2.040412 CAAAGCATCTACCCTATCCCCC 59.960 54.545 0.00 0.00 0.00 5.40
458 502 0.874594 AGCATCTACCCTATCCCCCA 59.125 55.000 0.00 0.00 0.00 4.96
459 503 0.984995 GCATCTACCCTATCCCCCAC 59.015 60.000 0.00 0.00 0.00 4.61
460 504 1.657804 CATCTACCCTATCCCCCACC 58.342 60.000 0.00 0.00 0.00 4.61
461 505 1.152271 CATCTACCCTATCCCCCACCT 59.848 57.143 0.00 0.00 0.00 4.00
462 506 2.250403 TCTACCCTATCCCCCACCTA 57.750 55.000 0.00 0.00 0.00 3.08
463 507 2.527928 TCTACCCTATCCCCCACCTAA 58.472 52.381 0.00 0.00 0.00 2.69
464 508 2.873599 TCTACCCTATCCCCCACCTAAA 59.126 50.000 0.00 0.00 0.00 1.85
465 509 2.692122 ACCCTATCCCCCACCTAAAA 57.308 50.000 0.00 0.00 0.00 1.52
466 510 3.175786 ACCCTATCCCCCACCTAAAAT 57.824 47.619 0.00 0.00 0.00 1.82
467 511 3.061369 ACCCTATCCCCCACCTAAAATC 58.939 50.000 0.00 0.00 0.00 2.17
468 512 3.060611 CCCTATCCCCCACCTAAAATCA 58.939 50.000 0.00 0.00 0.00 2.57
469 513 3.074538 CCCTATCCCCCACCTAAAATCAG 59.925 52.174 0.00 0.00 0.00 2.90
470 514 3.074538 CCTATCCCCCACCTAAAATCAGG 59.925 52.174 0.00 0.00 41.87 3.86
471 515 1.304891 TCCCCCACCTAAAATCAGGG 58.695 55.000 0.00 0.00 40.29 4.45
492 536 3.749226 GGGGGAGAGATTAGATGCTTTG 58.251 50.000 0.00 0.00 0.00 2.77
493 537 3.137360 GGGGGAGAGATTAGATGCTTTGT 59.863 47.826 0.00 0.00 0.00 2.83
494 538 4.133078 GGGGAGAGATTAGATGCTTTGTG 58.867 47.826 0.00 0.00 0.00 3.33
495 539 4.141620 GGGGAGAGATTAGATGCTTTGTGA 60.142 45.833 0.00 0.00 0.00 3.58
496 540 5.455899 GGGGAGAGATTAGATGCTTTGTGAT 60.456 44.000 0.00 0.00 0.00 3.06
497 541 6.060788 GGGAGAGATTAGATGCTTTGTGATT 58.939 40.000 0.00 0.00 0.00 2.57
498 542 6.545298 GGGAGAGATTAGATGCTTTGTGATTT 59.455 38.462 0.00 0.00 0.00 2.17
499 543 7.416022 GGAGAGATTAGATGCTTTGTGATTTG 58.584 38.462 0.00 0.00 0.00 2.32
500 544 7.066766 GGAGAGATTAGATGCTTTGTGATTTGT 59.933 37.037 0.00 0.00 0.00 2.83
501 545 7.759465 AGAGATTAGATGCTTTGTGATTTGTG 58.241 34.615 0.00 0.00 0.00 3.33
502 546 7.609146 AGAGATTAGATGCTTTGTGATTTGTGA 59.391 33.333 0.00 0.00 0.00 3.58
503 547 8.114331 AGATTAGATGCTTTGTGATTTGTGAA 57.886 30.769 0.00 0.00 0.00 3.18
504 548 8.746530 AGATTAGATGCTTTGTGATTTGTGAAT 58.253 29.630 0.00 0.00 0.00 2.57
505 549 8.697846 ATTAGATGCTTTGTGATTTGTGAATG 57.302 30.769 0.00 0.00 0.00 2.67
506 550 4.927425 AGATGCTTTGTGATTTGTGAATGC 59.073 37.500 0.00 0.00 0.00 3.56
507 551 3.391965 TGCTTTGTGATTTGTGAATGCC 58.608 40.909 0.00 0.00 0.00 4.40
508 552 3.181468 TGCTTTGTGATTTGTGAATGCCA 60.181 39.130 0.00 0.00 0.00 4.92
509 553 3.184986 GCTTTGTGATTTGTGAATGCCAC 59.815 43.478 0.00 0.00 45.88 5.01
518 562 2.857592 GTGAATGCCACATGTCATCC 57.142 50.000 0.00 0.00 45.03 3.51
519 563 2.093890 GTGAATGCCACATGTCATCCA 58.906 47.619 0.00 0.00 45.03 3.41
520 564 2.691526 GTGAATGCCACATGTCATCCAT 59.308 45.455 0.00 0.00 45.03 3.41
521 565 2.953648 TGAATGCCACATGTCATCCATC 59.046 45.455 0.00 0.00 0.00 3.51
522 566 2.740506 ATGCCACATGTCATCCATCA 57.259 45.000 0.00 0.00 0.00 3.07
523 567 2.047002 TGCCACATGTCATCCATCAG 57.953 50.000 0.00 0.00 0.00 2.90
524 568 1.315690 GCCACATGTCATCCATCAGG 58.684 55.000 0.00 0.00 0.00 3.86
533 577 4.356979 TCCATCAGGACGGGTCTC 57.643 61.111 0.00 0.00 39.61 3.36
534 578 1.386550 TCCATCAGGACGGGTCTCA 59.613 57.895 0.00 0.00 39.61 3.27
535 579 0.970937 TCCATCAGGACGGGTCTCAC 60.971 60.000 0.00 0.00 39.61 3.51
536 580 1.517832 CATCAGGACGGGTCTCACC 59.482 63.158 0.00 0.00 37.60 4.02
537 581 0.972983 CATCAGGACGGGTCTCACCT 60.973 60.000 0.00 0.00 38.64 4.00
584 633 7.036220 CACGTCACTTTCCTAGACTAATCAAT 58.964 38.462 0.00 0.00 0.00 2.57
585 634 7.545965 CACGTCACTTTCCTAGACTAATCAATT 59.454 37.037 0.00 0.00 0.00 2.32
595 10370 8.651389 TCCTAGACTAATCAATTGGATTACAGG 58.349 37.037 5.42 9.56 44.38 4.00
615 10390 7.414222 ACAGGTGAATTACTATTCTAACCGA 57.586 36.000 0.00 0.00 39.80 4.69
670 10445 4.339814 CCTACTAGAAAGTCAGCCGAATCT 59.660 45.833 0.00 0.00 37.15 2.40
686 10461 3.001736 CGAATCTGGATTTCCGAGAAAGC 59.998 47.826 6.20 6.20 39.43 3.51
689 10464 0.034477 TGGATTTCCGAGAAAGCCCC 60.034 55.000 22.50 14.60 39.43 5.80
705 10480 1.227380 CCCTCGAGCTGAAATCGGG 60.227 63.158 6.99 0.00 40.39 5.14
856 10651 4.698583 ACGCTAGAATTTCACGAGTAGT 57.301 40.909 11.73 3.45 0.00 2.73
1155 10968 3.749064 GAGCCGACGGAGCACTCA 61.749 66.667 20.50 0.00 0.00 3.41
1164 10977 2.358737 GAGCACTCAACGGTGGGG 60.359 66.667 4.76 0.00 37.65 4.96
1176 10989 1.692749 GGTGGGGATAGTGGAGGCA 60.693 63.158 0.00 0.00 0.00 4.75
1188 11001 2.439156 GAGGCAAGGGCGCTCATT 60.439 61.111 11.40 0.00 42.47 2.57
1251 11064 2.490685 GCGGAAGGAGACGACCTC 59.509 66.667 0.00 0.00 39.62 3.85
1272 11085 2.587247 GCTGGTGGAGCTCCTCACA 61.587 63.158 32.28 24.63 45.21 3.58
1365 11178 1.808411 CGTACAAGGTCCAGCACATT 58.192 50.000 0.00 0.00 0.00 2.71
1633 14022 4.675029 CCAAGAACGTCGCCGGGT 62.675 66.667 2.18 0.00 38.78 5.28
1669 14058 4.336433 GGCTTCACTTGCATGATAAGCTTA 59.664 41.667 26.41 8.99 34.31 3.09
1777 14169 6.544650 AGTACACTCTTTCTACTTCCTCTCA 58.455 40.000 0.00 0.00 0.00 3.27
1778 14170 7.179269 AGTACACTCTTTCTACTTCCTCTCAT 58.821 38.462 0.00 0.00 0.00 2.90
1784 14176 7.556275 ACTCTTTCTACTTCCTCTCATAGTCAG 59.444 40.741 0.00 0.00 0.00 3.51
1796 14188 8.252417 TCCTCTCATAGTCAGTATACGATCTAC 58.748 40.741 0.00 0.00 0.00 2.59
1797 14189 8.255206 CCTCTCATAGTCAGTATACGATCTACT 58.745 40.741 0.00 1.33 0.00 2.57
1798 14190 9.647797 CTCTCATAGTCAGTATACGATCTACTT 57.352 37.037 0.00 0.00 0.00 2.24
1879 14283 8.373048 TGGACGGTGATATTTGTATTAATGAC 57.627 34.615 0.00 0.00 0.00 3.06
1973 14377 4.863131 ACACTATTTCCGTCGTGAGATTTC 59.137 41.667 0.00 0.00 45.19 2.17
1981 14386 2.470821 GTCGTGAGATTTCCCCGTATG 58.529 52.381 0.00 0.00 45.19 2.39
1991 14396 2.534019 CCCCGTATGTCATGCACGC 61.534 63.158 3.09 0.00 34.42 5.34
1998 14403 2.401583 ATGTCATGCACGCCTAAAGA 57.598 45.000 0.00 0.00 0.00 2.52
2387 14796 9.205916 CCGTTTCAAATGTAATTCACGTATTAG 57.794 33.333 0.00 0.00 33.67 1.73
2388 14797 8.721476 CGTTTCAAATGTAATTCACGTATTAGC 58.279 33.333 0.00 0.00 33.67 3.09
2389 14798 9.006215 GTTTCAAATGTAATTCACGTATTAGCC 57.994 33.333 0.00 0.00 33.67 3.93
2390 14799 8.500753 TTCAAATGTAATTCACGTATTAGCCT 57.499 30.769 0.00 0.00 33.67 4.58
2391 14800 8.500753 TCAAATGTAATTCACGTATTAGCCTT 57.499 30.769 0.00 0.00 33.67 4.35
2392 14801 8.952278 TCAAATGTAATTCACGTATTAGCCTTT 58.048 29.630 0.00 0.00 33.67 3.11
2393 14802 9.009327 CAAATGTAATTCACGTATTAGCCTTTG 57.991 33.333 0.00 0.00 33.67 2.77
2394 14803 7.859325 ATGTAATTCACGTATTAGCCTTTGT 57.141 32.000 0.00 0.00 0.00 2.83
2395 14804 7.675962 TGTAATTCACGTATTAGCCTTTGTT 57.324 32.000 0.00 0.00 0.00 2.83
2396 14805 7.523219 TGTAATTCACGTATTAGCCTTTGTTG 58.477 34.615 0.00 0.00 0.00 3.33
2397 14806 5.560966 ATTCACGTATTAGCCTTTGTTGG 57.439 39.130 0.00 0.00 0.00 3.77
2398 14807 3.340034 TCACGTATTAGCCTTTGTTGGG 58.660 45.455 0.00 0.00 0.00 4.12
2399 14808 3.078837 CACGTATTAGCCTTTGTTGGGT 58.921 45.455 0.00 0.00 41.20 4.51
2400 14809 3.504520 CACGTATTAGCCTTTGTTGGGTT 59.495 43.478 0.00 0.00 38.86 4.11
2401 14810 4.022676 CACGTATTAGCCTTTGTTGGGTTT 60.023 41.667 0.00 0.00 38.86 3.27
2402 14811 4.216902 ACGTATTAGCCTTTGTTGGGTTTC 59.783 41.667 0.00 0.00 38.86 2.78
2403 14812 4.457949 CGTATTAGCCTTTGTTGGGTTTCT 59.542 41.667 0.00 0.00 38.86 2.52
2404 14813 4.871933 ATTAGCCTTTGTTGGGTTTCTG 57.128 40.909 0.00 0.00 38.86 3.02
2405 14814 2.452600 AGCCTTTGTTGGGTTTCTGA 57.547 45.000 0.00 0.00 33.52 3.27
2406 14815 2.031870 AGCCTTTGTTGGGTTTCTGAC 58.968 47.619 0.00 0.00 33.52 3.51
2407 14816 2.031870 GCCTTTGTTGGGTTTCTGACT 58.968 47.619 0.00 0.00 0.00 3.41
2408 14817 2.430694 GCCTTTGTTGGGTTTCTGACTT 59.569 45.455 0.00 0.00 0.00 3.01
2409 14818 3.118775 GCCTTTGTTGGGTTTCTGACTTT 60.119 43.478 0.00 0.00 0.00 2.66
2410 14819 4.098807 GCCTTTGTTGGGTTTCTGACTTTA 59.901 41.667 0.00 0.00 0.00 1.85
2411 14820 5.394773 GCCTTTGTTGGGTTTCTGACTTTAA 60.395 40.000 0.00 0.00 0.00 1.52
2412 14821 6.685368 GCCTTTGTTGGGTTTCTGACTTTAAT 60.685 38.462 0.00 0.00 0.00 1.40
2413 14822 6.923508 CCTTTGTTGGGTTTCTGACTTTAATC 59.076 38.462 0.00 0.00 0.00 1.75
2414 14823 5.682943 TGTTGGGTTTCTGACTTTAATCG 57.317 39.130 0.00 0.00 0.00 3.34
2415 14824 5.369833 TGTTGGGTTTCTGACTTTAATCGA 58.630 37.500 0.00 0.00 0.00 3.59
2416 14825 6.001460 TGTTGGGTTTCTGACTTTAATCGAT 58.999 36.000 0.00 0.00 0.00 3.59
2417 14826 6.488683 TGTTGGGTTTCTGACTTTAATCGATT 59.511 34.615 16.15 16.15 0.00 3.34
2418 14827 7.013846 TGTTGGGTTTCTGACTTTAATCGATTT 59.986 33.333 17.19 0.00 0.00 2.17
2419 14828 7.141100 TGGGTTTCTGACTTTAATCGATTTC 57.859 36.000 17.19 8.26 0.00 2.17
2420 14829 6.712998 TGGGTTTCTGACTTTAATCGATTTCA 59.287 34.615 17.19 12.53 0.00 2.69
2421 14830 7.021790 GGGTTTCTGACTTTAATCGATTTCAC 58.978 38.462 17.19 2.19 0.00 3.18
2422 14831 7.021790 GGTTTCTGACTTTAATCGATTTCACC 58.978 38.462 17.19 7.44 0.00 4.02
2423 14832 6.403333 TTCTGACTTTAATCGATTTCACCG 57.597 37.500 17.19 3.57 0.00 4.94
2424 14833 5.475719 TCTGACTTTAATCGATTTCACCGT 58.524 37.500 17.19 6.93 0.00 4.83
2425 14834 5.929992 TCTGACTTTAATCGATTTCACCGTT 59.070 36.000 17.19 0.00 0.00 4.44
2426 14835 6.425721 TCTGACTTTAATCGATTTCACCGTTT 59.574 34.615 17.19 0.00 0.00 3.60
2427 14836 6.961576 TGACTTTAATCGATTTCACCGTTTT 58.038 32.000 17.19 0.00 0.00 2.43
2428 14837 7.419204 TGACTTTAATCGATTTCACCGTTTTT 58.581 30.769 17.19 0.00 0.00 1.94
2429 14838 7.377397 TGACTTTAATCGATTTCACCGTTTTTG 59.623 33.333 17.19 0.00 0.00 2.44
2430 14839 7.197703 ACTTTAATCGATTTCACCGTTTTTGT 58.802 30.769 17.19 0.00 0.00 2.83
2431 14840 7.703197 ACTTTAATCGATTTCACCGTTTTTGTT 59.297 29.630 17.19 0.00 0.00 2.83
2432 14841 7.988904 TTAATCGATTTCACCGTTTTTGTTT 57.011 28.000 17.19 0.00 0.00 2.83
2433 14842 6.505039 AATCGATTTCACCGTTTTTGTTTC 57.495 33.333 4.39 0.00 0.00 2.78
2434 14843 5.238006 TCGATTTCACCGTTTTTGTTTCT 57.762 34.783 0.00 0.00 0.00 2.52
2435 14844 5.267776 TCGATTTCACCGTTTTTGTTTCTC 58.732 37.500 0.00 0.00 0.00 2.87
2436 14845 5.065474 TCGATTTCACCGTTTTTGTTTCTCT 59.935 36.000 0.00 0.00 0.00 3.10
2437 14846 5.741982 CGATTTCACCGTTTTTGTTTCTCTT 59.258 36.000 0.00 0.00 0.00 2.85
2438 14847 6.075572 CGATTTCACCGTTTTTGTTTCTCTTC 60.076 38.462 0.00 0.00 0.00 2.87
2439 14848 4.625972 TCACCGTTTTTGTTTCTCTTCC 57.374 40.909 0.00 0.00 0.00 3.46
2440 14849 4.266714 TCACCGTTTTTGTTTCTCTTCCT 58.733 39.130 0.00 0.00 0.00 3.36
2441 14850 4.334481 TCACCGTTTTTGTTTCTCTTCCTC 59.666 41.667 0.00 0.00 0.00 3.71
2442 14851 3.630769 ACCGTTTTTGTTTCTCTTCCTCC 59.369 43.478 0.00 0.00 0.00 4.30
2443 14852 3.883489 CCGTTTTTGTTTCTCTTCCTCCT 59.117 43.478 0.00 0.00 0.00 3.69
2444 14853 4.338400 CCGTTTTTGTTTCTCTTCCTCCTT 59.662 41.667 0.00 0.00 0.00 3.36
2445 14854 5.273944 CGTTTTTGTTTCTCTTCCTCCTTG 58.726 41.667 0.00 0.00 0.00 3.61
2446 14855 5.163652 CGTTTTTGTTTCTCTTCCTCCTTGT 60.164 40.000 0.00 0.00 0.00 3.16
2447 14856 6.266323 GTTTTTGTTTCTCTTCCTCCTTGTC 58.734 40.000 0.00 0.00 0.00 3.18
2448 14857 5.373812 TTTGTTTCTCTTCCTCCTTGTCT 57.626 39.130 0.00 0.00 0.00 3.41
2449 14858 4.342862 TGTTTCTCTTCCTCCTTGTCTG 57.657 45.455 0.00 0.00 0.00 3.51
2450 14859 3.070748 GTTTCTCTTCCTCCTTGTCTGC 58.929 50.000 0.00 0.00 0.00 4.26
2451 14860 1.270907 TCTCTTCCTCCTTGTCTGCC 58.729 55.000 0.00 0.00 0.00 4.85
2452 14861 0.251634 CTCTTCCTCCTTGTCTGCCC 59.748 60.000 0.00 0.00 0.00 5.36
2453 14862 0.178891 TCTTCCTCCTTGTCTGCCCT 60.179 55.000 0.00 0.00 0.00 5.19
2454 14863 0.251634 CTTCCTCCTTGTCTGCCCTC 59.748 60.000 0.00 0.00 0.00 4.30
2455 14864 0.178891 TTCCTCCTTGTCTGCCCTCT 60.179 55.000 0.00 0.00 0.00 3.69
2456 14865 0.616111 TCCTCCTTGTCTGCCCTCTC 60.616 60.000 0.00 0.00 0.00 3.20
2457 14866 0.617249 CCTCCTTGTCTGCCCTCTCT 60.617 60.000 0.00 0.00 0.00 3.10
2458 14867 1.274712 CTCCTTGTCTGCCCTCTCTT 58.725 55.000 0.00 0.00 0.00 2.85
2459 14868 1.206849 CTCCTTGTCTGCCCTCTCTTC 59.793 57.143 0.00 0.00 0.00 2.87
2460 14869 0.108424 CCTTGTCTGCCCTCTCTTCG 60.108 60.000 0.00 0.00 0.00 3.79
2461 14870 0.891373 CTTGTCTGCCCTCTCTTCGA 59.109 55.000 0.00 0.00 0.00 3.71
2462 14871 1.480137 CTTGTCTGCCCTCTCTTCGAT 59.520 52.381 0.00 0.00 0.00 3.59
2463 14872 1.561643 TGTCTGCCCTCTCTTCGATT 58.438 50.000 0.00 0.00 0.00 3.34
2464 14873 1.205655 TGTCTGCCCTCTCTTCGATTG 59.794 52.381 0.00 0.00 0.00 2.67
2465 14874 1.205893 GTCTGCCCTCTCTTCGATTGT 59.794 52.381 0.00 0.00 0.00 2.71
2466 14875 1.478510 TCTGCCCTCTCTTCGATTGTC 59.521 52.381 0.00 0.00 0.00 3.18
2467 14876 0.537188 TGCCCTCTCTTCGATTGTCC 59.463 55.000 0.00 0.00 0.00 4.02
2468 14877 0.528684 GCCCTCTCTTCGATTGTCCG 60.529 60.000 0.00 0.00 0.00 4.79
2469 14878 0.528684 CCCTCTCTTCGATTGTCCGC 60.529 60.000 0.00 0.00 0.00 5.54
2470 14879 0.457851 CCTCTCTTCGATTGTCCGCT 59.542 55.000 0.00 0.00 0.00 5.52
2471 14880 1.554392 CTCTCTTCGATTGTCCGCTG 58.446 55.000 0.00 0.00 0.00 5.18
2472 14881 0.458543 TCTCTTCGATTGTCCGCTGC 60.459 55.000 0.00 0.00 0.00 5.25
2473 14882 1.424493 CTCTTCGATTGTCCGCTGCC 61.424 60.000 0.00 0.00 0.00 4.85
2474 14883 1.741401 CTTCGATTGTCCGCTGCCA 60.741 57.895 0.00 0.00 0.00 4.92
2475 14884 1.078497 TTCGATTGTCCGCTGCCAT 60.078 52.632 0.00 0.00 0.00 4.40
2476 14885 1.089481 TTCGATTGTCCGCTGCCATC 61.089 55.000 0.00 0.00 0.00 3.51
2477 14886 1.815003 CGATTGTCCGCTGCCATCA 60.815 57.895 0.00 0.00 0.00 3.07
2478 14887 1.162181 CGATTGTCCGCTGCCATCAT 61.162 55.000 0.00 0.00 0.00 2.45
2479 14888 0.590195 GATTGTCCGCTGCCATCATC 59.410 55.000 0.00 0.00 0.00 2.92
2480 14889 0.820891 ATTGTCCGCTGCCATCATCC 60.821 55.000 0.00 0.00 0.00 3.51
2481 14890 1.913951 TTGTCCGCTGCCATCATCCT 61.914 55.000 0.00 0.00 0.00 3.24
2482 14891 1.048160 TGTCCGCTGCCATCATCCTA 61.048 55.000 0.00 0.00 0.00 2.94
2483 14892 0.106708 GTCCGCTGCCATCATCCTAA 59.893 55.000 0.00 0.00 0.00 2.69
2484 14893 0.106708 TCCGCTGCCATCATCCTAAC 59.893 55.000 0.00 0.00 0.00 2.34
2485 14894 0.886490 CCGCTGCCATCATCCTAACC 60.886 60.000 0.00 0.00 0.00 2.85
2486 14895 1.224069 CGCTGCCATCATCCTAACCG 61.224 60.000 0.00 0.00 0.00 4.44
2487 14896 0.179045 GCTGCCATCATCCTAACCGT 60.179 55.000 0.00 0.00 0.00 4.83
2488 14897 1.871080 CTGCCATCATCCTAACCGTC 58.129 55.000 0.00 0.00 0.00 4.79
2489 14898 0.104120 TGCCATCATCCTAACCGTCG 59.896 55.000 0.00 0.00 0.00 5.12
2490 14899 0.104304 GCCATCATCCTAACCGTCGT 59.896 55.000 0.00 0.00 0.00 4.34
2491 14900 1.472728 GCCATCATCCTAACCGTCGTT 60.473 52.381 0.00 0.00 35.90 3.85
2492 14901 2.470821 CCATCATCCTAACCGTCGTTC 58.529 52.381 0.00 0.00 33.17 3.95
2493 14902 2.159156 CCATCATCCTAACCGTCGTTCA 60.159 50.000 0.00 0.00 33.17 3.18
2494 14903 2.642139 TCATCCTAACCGTCGTTCAC 57.358 50.000 0.00 0.00 33.17 3.18
2495 14904 1.203052 TCATCCTAACCGTCGTTCACC 59.797 52.381 0.00 0.00 33.17 4.02
2496 14905 0.171903 ATCCTAACCGTCGTTCACCG 59.828 55.000 0.00 0.00 33.17 4.94
2497 14906 1.172180 TCCTAACCGTCGTTCACCGT 61.172 55.000 0.00 0.00 37.94 4.83
2498 14907 0.730494 CCTAACCGTCGTTCACCGTC 60.730 60.000 0.00 0.00 37.94 4.79
2499 14908 0.040157 CTAACCGTCGTTCACCGTCA 60.040 55.000 0.00 0.00 37.94 4.35
2500 14909 0.317770 TAACCGTCGTTCACCGTCAC 60.318 55.000 0.00 0.00 37.94 3.67
2501 14910 2.008268 AACCGTCGTTCACCGTCACT 62.008 55.000 0.00 0.00 37.94 3.41
2502 14911 1.728426 CCGTCGTTCACCGTCACTC 60.728 63.158 0.00 0.00 37.94 3.51
2503 14912 1.009335 CGTCGTTCACCGTCACTCA 60.009 57.895 0.00 0.00 37.94 3.41
2504 14913 0.386858 CGTCGTTCACCGTCACTCAT 60.387 55.000 0.00 0.00 37.94 2.90
2505 14914 1.060713 GTCGTTCACCGTCACTCATG 58.939 55.000 0.00 0.00 37.94 3.07
2506 14915 0.666274 TCGTTCACCGTCACTCATGC 60.666 55.000 0.00 0.00 37.94 4.06
2507 14916 0.667487 CGTTCACCGTCACTCATGCT 60.667 55.000 0.00 0.00 0.00 3.79
2508 14917 1.512926 GTTCACCGTCACTCATGCTT 58.487 50.000 0.00 0.00 0.00 3.91
2509 14918 1.195448 GTTCACCGTCACTCATGCTTG 59.805 52.381 0.00 0.00 0.00 4.01
2510 14919 0.678950 TCACCGTCACTCATGCTTGA 59.321 50.000 1.92 1.92 0.00 3.02
2511 14920 1.276138 TCACCGTCACTCATGCTTGAT 59.724 47.619 2.33 0.00 0.00 2.57
2512 14921 1.395954 CACCGTCACTCATGCTTGATG 59.604 52.381 2.33 8.07 0.00 3.07
2513 14922 1.002430 ACCGTCACTCATGCTTGATGT 59.998 47.619 2.33 1.43 33.29 3.06
2514 14923 1.662629 CCGTCACTCATGCTTGATGTC 59.337 52.381 2.33 2.18 33.29 3.06
2515 14924 1.322637 CGTCACTCATGCTTGATGTCG 59.677 52.381 2.33 9.15 33.29 4.35
2516 14925 1.061711 GTCACTCATGCTTGATGTCGC 59.938 52.381 2.33 0.00 33.29 5.19
2517 14926 1.066645 TCACTCATGCTTGATGTCGCT 60.067 47.619 2.33 0.00 33.29 4.93
2518 14927 1.062148 CACTCATGCTTGATGTCGCTG 59.938 52.381 2.33 0.00 33.29 5.18
2519 14928 0.027716 CTCATGCTTGATGTCGCTGC 59.972 55.000 2.33 0.00 33.29 5.25
2520 14929 1.063649 CATGCTTGATGTCGCTGCC 59.936 57.895 0.00 0.00 0.00 4.85
2521 14930 1.377594 ATGCTTGATGTCGCTGCCA 60.378 52.632 0.00 0.00 0.00 4.92
2522 14931 1.651240 ATGCTTGATGTCGCTGCCAC 61.651 55.000 0.00 0.00 0.00 5.01
2523 14932 3.044059 GCTTGATGTCGCTGCCACC 62.044 63.158 0.00 0.00 0.00 4.61
2524 14933 2.359850 TTGATGTCGCTGCCACCC 60.360 61.111 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 2.546795 CCAGCTCTTCAAGTGACTTCGT 60.547 50.000 0.00 0.00 0.00 3.85
26 27 2.217038 AACGGGAGCCAGCTCTTCA 61.217 57.895 18.54 0.00 42.38 3.02
44 55 1.513158 CCAACAACAACAACGCCCA 59.487 52.632 0.00 0.00 0.00 5.36
120 132 3.194861 TCTGAAATTTCGGACCGCATAG 58.805 45.455 23.05 7.65 37.65 2.23
154 167 0.635009 TAGAGGGTAGACAGGGTGGG 59.365 60.000 0.00 0.00 0.00 4.61
256 276 0.320374 ATCGGACTTGCTCGACCAAA 59.680 50.000 0.00 0.00 38.25 3.28
357 401 7.549488 CGTGAGACCTGGTCTTATAGAATTTTT 59.451 37.037 28.90 3.43 43.53 1.94
358 402 7.042335 CGTGAGACCTGGTCTTATAGAATTTT 58.958 38.462 28.90 3.64 43.53 1.82
359 403 6.407074 CCGTGAGACCTGGTCTTATAGAATTT 60.407 42.308 28.90 4.18 43.53 1.82
360 404 5.069251 CCGTGAGACCTGGTCTTATAGAATT 59.931 44.000 28.90 4.96 43.53 2.17
361 405 4.585162 CCGTGAGACCTGGTCTTATAGAAT 59.415 45.833 28.90 5.72 43.53 2.40
362 406 3.952323 CCGTGAGACCTGGTCTTATAGAA 59.048 47.826 28.90 9.44 43.53 2.10
363 407 3.053842 ACCGTGAGACCTGGTCTTATAGA 60.054 47.826 28.90 9.56 43.53 1.98
364 408 3.288964 ACCGTGAGACCTGGTCTTATAG 58.711 50.000 28.90 20.85 43.53 1.31
365 409 3.377253 ACCGTGAGACCTGGTCTTATA 57.623 47.619 28.90 16.22 43.53 0.98
366 410 2.233305 ACCGTGAGACCTGGTCTTAT 57.767 50.000 28.90 8.85 43.53 1.73
367 411 2.005370 AACCGTGAGACCTGGTCTTA 57.995 50.000 28.90 22.77 43.53 2.10
368 412 1.129058 AAACCGTGAGACCTGGTCTT 58.871 50.000 28.90 13.89 43.53 3.01
369 413 1.893801 CTAAACCGTGAGACCTGGTCT 59.106 52.381 28.70 28.70 46.42 3.85
370 414 1.672145 GCTAAACCGTGAGACCTGGTC 60.672 57.143 19.20 19.20 34.11 4.02
371 415 0.320697 GCTAAACCGTGAGACCTGGT 59.679 55.000 0.00 0.00 37.68 4.00
372 416 0.320374 TGCTAAACCGTGAGACCTGG 59.680 55.000 0.00 0.00 0.00 4.45
373 417 1.673033 CCTGCTAAACCGTGAGACCTG 60.673 57.143 0.00 0.00 0.00 4.00
374 418 0.608640 CCTGCTAAACCGTGAGACCT 59.391 55.000 0.00 0.00 0.00 3.85
375 419 0.320697 ACCTGCTAAACCGTGAGACC 59.679 55.000 0.00 0.00 0.00 3.85
376 420 1.000506 TCACCTGCTAAACCGTGAGAC 59.999 52.381 0.00 0.00 31.80 3.36
377 421 1.334160 TCACCTGCTAAACCGTGAGA 58.666 50.000 0.00 0.00 31.80 3.27
378 422 1.714794 CTCACCTGCTAAACCGTGAG 58.285 55.000 2.01 2.01 44.38 3.51
379 423 1.000506 GTCTCACCTGCTAAACCGTGA 59.999 52.381 0.00 0.00 34.26 4.35
380 424 1.429463 GTCTCACCTGCTAAACCGTG 58.571 55.000 0.00 0.00 0.00 4.94
381 425 0.320697 GGTCTCACCTGCTAAACCGT 59.679 55.000 0.00 0.00 34.73 4.83
382 426 0.391263 GGGTCTCACCTGCTAAACCG 60.391 60.000 0.00 0.00 38.64 4.44
383 427 0.690762 TGGGTCTCACCTGCTAAACC 59.309 55.000 0.00 0.00 38.64 3.27
384 428 2.237392 AGATGGGTCTCACCTGCTAAAC 59.763 50.000 0.00 0.00 38.64 2.01
385 429 2.551270 AGATGGGTCTCACCTGCTAAA 58.449 47.619 0.00 0.00 38.64 1.85
386 430 2.237143 CAAGATGGGTCTCACCTGCTAA 59.763 50.000 0.00 0.00 38.64 3.09
387 431 1.833630 CAAGATGGGTCTCACCTGCTA 59.166 52.381 0.00 0.00 38.64 3.49
388 432 0.617413 CAAGATGGGTCTCACCTGCT 59.383 55.000 0.00 0.00 38.64 4.24
389 433 0.615331 TCAAGATGGGTCTCACCTGC 59.385 55.000 0.00 0.00 38.64 4.85
390 434 2.915349 CATCAAGATGGGTCTCACCTG 58.085 52.381 2.09 0.00 38.64 4.00
401 445 2.610833 CCACGTGTCATCCATCAAGATG 59.389 50.000 15.65 3.07 44.21 2.90
402 446 2.910199 CCACGTGTCATCCATCAAGAT 58.090 47.619 15.65 0.00 0.00 2.40
403 447 1.675714 GCCACGTGTCATCCATCAAGA 60.676 52.381 15.65 0.00 0.00 3.02
404 448 0.729116 GCCACGTGTCATCCATCAAG 59.271 55.000 15.65 0.00 0.00 3.02
405 449 0.036022 TGCCACGTGTCATCCATCAA 59.964 50.000 15.65 0.00 0.00 2.57
406 450 0.252761 ATGCCACGTGTCATCCATCA 59.747 50.000 15.65 0.00 0.00 3.07
407 451 1.382522 AATGCCACGTGTCATCCATC 58.617 50.000 13.12 0.00 0.00 3.51
408 452 1.838112 AAATGCCACGTGTCATCCAT 58.162 45.000 13.12 4.99 0.00 3.41
409 453 2.080693 GTAAATGCCACGTGTCATCCA 58.919 47.619 13.12 0.69 0.00 3.41
410 454 2.080693 TGTAAATGCCACGTGTCATCC 58.919 47.619 13.12 4.88 0.00 3.51
411 455 3.822594 TTGTAAATGCCACGTGTCATC 57.177 42.857 13.12 1.09 0.00 2.92
412 456 4.217334 TGATTTGTAAATGCCACGTGTCAT 59.783 37.500 15.65 11.07 0.00 3.06
413 457 3.565902 TGATTTGTAAATGCCACGTGTCA 59.434 39.130 15.65 8.63 0.00 3.58
414 458 3.911964 GTGATTTGTAAATGCCACGTGTC 59.088 43.478 15.65 0.98 0.00 3.67
415 459 3.316588 TGTGATTTGTAAATGCCACGTGT 59.683 39.130 15.65 0.00 30.17 4.49
416 460 3.894920 TGTGATTTGTAAATGCCACGTG 58.105 40.909 9.08 9.08 30.17 4.49
417 461 4.576216 TTGTGATTTGTAAATGCCACGT 57.424 36.364 0.00 0.00 30.17 4.49
418 462 4.143347 GCTTTGTGATTTGTAAATGCCACG 60.143 41.667 0.00 0.00 30.17 4.94
419 463 4.749099 TGCTTTGTGATTTGTAAATGCCAC 59.251 37.500 0.00 0.00 0.00 5.01
420 464 4.953667 TGCTTTGTGATTTGTAAATGCCA 58.046 34.783 0.00 0.00 0.00 4.92
421 465 5.870978 AGATGCTTTGTGATTTGTAAATGCC 59.129 36.000 0.00 0.00 0.00 4.40
422 466 6.956299 AGATGCTTTGTGATTTGTAAATGC 57.044 33.333 0.00 0.00 0.00 3.56
423 467 7.489113 GGGTAGATGCTTTGTGATTTGTAAATG 59.511 37.037 0.00 0.00 0.00 2.32
424 468 7.397192 AGGGTAGATGCTTTGTGATTTGTAAAT 59.603 33.333 0.00 0.00 0.00 1.40
425 469 6.719370 AGGGTAGATGCTTTGTGATTTGTAAA 59.281 34.615 0.00 0.00 0.00 2.01
426 470 6.245408 AGGGTAGATGCTTTGTGATTTGTAA 58.755 36.000 0.00 0.00 0.00 2.41
427 471 5.815581 AGGGTAGATGCTTTGTGATTTGTA 58.184 37.500 0.00 0.00 0.00 2.41
428 472 4.666512 AGGGTAGATGCTTTGTGATTTGT 58.333 39.130 0.00 0.00 0.00 2.83
429 473 6.016777 GGATAGGGTAGATGCTTTGTGATTTG 60.017 42.308 0.00 0.00 0.00 2.32
430 474 6.064717 GGATAGGGTAGATGCTTTGTGATTT 58.935 40.000 0.00 0.00 0.00 2.17
431 475 5.456763 GGGATAGGGTAGATGCTTTGTGATT 60.457 44.000 0.00 0.00 0.00 2.57
432 476 4.042187 GGGATAGGGTAGATGCTTTGTGAT 59.958 45.833 0.00 0.00 0.00 3.06
433 477 3.391296 GGGATAGGGTAGATGCTTTGTGA 59.609 47.826 0.00 0.00 0.00 3.58
434 478 3.496870 GGGGATAGGGTAGATGCTTTGTG 60.497 52.174 0.00 0.00 0.00 3.33
435 479 2.711547 GGGGATAGGGTAGATGCTTTGT 59.288 50.000 0.00 0.00 0.00 2.83
436 480 2.040412 GGGGGATAGGGTAGATGCTTTG 59.960 54.545 0.00 0.00 0.00 2.77
437 481 2.349445 GGGGGATAGGGTAGATGCTTT 58.651 52.381 0.00 0.00 0.00 3.51
438 482 1.225694 TGGGGGATAGGGTAGATGCTT 59.774 52.381 0.00 0.00 0.00 3.91
439 483 0.874594 TGGGGGATAGGGTAGATGCT 59.125 55.000 0.00 0.00 0.00 3.79
440 484 0.984995 GTGGGGGATAGGGTAGATGC 59.015 60.000 0.00 0.00 0.00 3.91
441 485 1.152271 AGGTGGGGGATAGGGTAGATG 59.848 57.143 0.00 0.00 0.00 2.90
442 486 1.570792 AGGTGGGGGATAGGGTAGAT 58.429 55.000 0.00 0.00 0.00 1.98
443 487 2.250403 TAGGTGGGGGATAGGGTAGA 57.750 55.000 0.00 0.00 0.00 2.59
444 488 3.355857 TTTAGGTGGGGGATAGGGTAG 57.644 52.381 0.00 0.00 0.00 3.18
445 489 3.818910 TTTTAGGTGGGGGATAGGGTA 57.181 47.619 0.00 0.00 0.00 3.69
446 490 2.692122 TTTTAGGTGGGGGATAGGGT 57.308 50.000 0.00 0.00 0.00 4.34
447 491 3.060611 TGATTTTAGGTGGGGGATAGGG 58.939 50.000 0.00 0.00 0.00 3.53
448 492 3.074538 CCTGATTTTAGGTGGGGGATAGG 59.925 52.174 0.00 0.00 32.99 2.57
449 493 3.074538 CCCTGATTTTAGGTGGGGGATAG 59.925 52.174 0.00 0.00 36.02 2.08
450 494 3.060611 CCCTGATTTTAGGTGGGGGATA 58.939 50.000 0.00 0.00 36.02 2.59
451 495 1.859574 CCCTGATTTTAGGTGGGGGAT 59.140 52.381 0.00 0.00 36.02 3.85
452 496 1.304891 CCCTGATTTTAGGTGGGGGA 58.695 55.000 0.00 0.00 36.02 4.81
453 497 3.924576 CCCTGATTTTAGGTGGGGG 57.075 57.895 0.00 0.00 36.02 5.40
455 499 3.924576 CCCCCTGATTTTAGGTGGG 57.075 57.895 0.00 0.00 40.02 4.61
471 515 3.137360 ACAAAGCATCTAATCTCTCCCCC 59.863 47.826 0.00 0.00 0.00 5.40
472 516 4.133078 CACAAAGCATCTAATCTCTCCCC 58.867 47.826 0.00 0.00 0.00 4.81
473 517 5.028549 TCACAAAGCATCTAATCTCTCCC 57.971 43.478 0.00 0.00 0.00 4.30
474 518 7.066766 ACAAATCACAAAGCATCTAATCTCTCC 59.933 37.037 0.00 0.00 0.00 3.71
475 519 7.909121 CACAAATCACAAAGCATCTAATCTCTC 59.091 37.037 0.00 0.00 0.00 3.20
476 520 7.609146 TCACAAATCACAAAGCATCTAATCTCT 59.391 33.333 0.00 0.00 0.00 3.10
477 521 7.755591 TCACAAATCACAAAGCATCTAATCTC 58.244 34.615 0.00 0.00 0.00 2.75
478 522 7.692460 TCACAAATCACAAAGCATCTAATCT 57.308 32.000 0.00 0.00 0.00 2.40
479 523 8.804743 CATTCACAAATCACAAAGCATCTAATC 58.195 33.333 0.00 0.00 0.00 1.75
480 524 7.277098 GCATTCACAAATCACAAAGCATCTAAT 59.723 33.333 0.00 0.00 0.00 1.73
481 525 6.587226 GCATTCACAAATCACAAAGCATCTAA 59.413 34.615 0.00 0.00 0.00 2.10
482 526 6.094719 GCATTCACAAATCACAAAGCATCTA 58.905 36.000 0.00 0.00 0.00 1.98
483 527 4.927425 GCATTCACAAATCACAAAGCATCT 59.073 37.500 0.00 0.00 0.00 2.90
484 528 4.092383 GGCATTCACAAATCACAAAGCATC 59.908 41.667 0.00 0.00 0.00 3.91
485 529 3.998341 GGCATTCACAAATCACAAAGCAT 59.002 39.130 0.00 0.00 0.00 3.79
486 530 3.181468 TGGCATTCACAAATCACAAAGCA 60.181 39.130 0.00 0.00 0.00 3.91
487 531 3.184986 GTGGCATTCACAAATCACAAAGC 59.815 43.478 0.00 0.00 45.39 3.51
488 532 4.977741 GTGGCATTCACAAATCACAAAG 57.022 40.909 0.00 0.00 45.39 2.77
499 543 2.093890 TGGATGACATGTGGCATTCAC 58.906 47.619 1.15 0.00 43.95 3.18
500 544 2.510928 TGGATGACATGTGGCATTCA 57.489 45.000 1.15 5.70 46.54 2.57
501 545 2.953648 TGATGGATGACATGTGGCATTC 59.046 45.455 1.15 1.06 45.42 2.67
502 546 2.956333 CTGATGGATGACATGTGGCATT 59.044 45.455 1.15 0.00 45.42 3.56
504 548 1.409101 CCTGATGGATGACATGTGGCA 60.409 52.381 1.15 0.00 40.72 4.92
505 549 1.134007 TCCTGATGGATGACATGTGGC 60.134 52.381 1.15 0.00 40.72 5.01
506 550 2.569059 GTCCTGATGGATGACATGTGG 58.431 52.381 1.15 0.00 45.29 4.17
514 558 0.390860 GAGACCCGTCCTGATGGATG 59.609 60.000 6.98 0.00 45.29 3.51
515 559 0.032117 TGAGACCCGTCCTGATGGAT 60.032 55.000 6.98 0.00 45.29 3.41
516 560 0.970937 GTGAGACCCGTCCTGATGGA 60.971 60.000 6.98 0.00 39.90 3.41
517 561 1.517832 GTGAGACCCGTCCTGATGG 59.482 63.158 0.00 0.00 37.23 3.51
518 562 0.972983 AGGTGAGACCCGTCCTGATG 60.973 60.000 0.00 0.00 39.75 3.07
519 563 1.388531 AGGTGAGACCCGTCCTGAT 59.611 57.895 0.00 0.00 39.75 2.90
520 564 2.851801 AGGTGAGACCCGTCCTGA 59.148 61.111 0.00 0.00 39.75 3.86
521 565 2.650116 CCAGGTGAGACCCGTCCTG 61.650 68.421 0.00 0.00 44.74 3.86
522 566 2.283966 CCAGGTGAGACCCGTCCT 60.284 66.667 0.00 0.00 39.75 3.85
523 567 4.083862 GCCAGGTGAGACCCGTCC 62.084 72.222 0.00 0.00 39.75 4.79
524 568 1.681327 TAGCCAGGTGAGACCCGTC 60.681 63.158 0.00 0.00 39.75 4.79
525 569 1.982938 GTAGCCAGGTGAGACCCGT 60.983 63.158 0.00 0.00 39.75 5.28
526 570 2.893398 GTAGCCAGGTGAGACCCG 59.107 66.667 0.00 0.00 39.75 5.28
527 571 2.722201 CCGTAGCCAGGTGAGACCC 61.722 68.421 0.00 0.00 39.75 4.46
528 572 2.893398 CCGTAGCCAGGTGAGACC 59.107 66.667 0.00 0.00 38.99 3.85
529 573 1.961180 ATGCCGTAGCCAGGTGAGAC 61.961 60.000 0.00 0.00 38.69 3.36
530 574 1.685765 ATGCCGTAGCCAGGTGAGA 60.686 57.895 0.00 0.00 38.69 3.27
531 575 1.522355 CATGCCGTAGCCAGGTGAG 60.522 63.158 0.00 0.00 38.69 3.51
532 576 2.584064 CATGCCGTAGCCAGGTGA 59.416 61.111 0.00 0.00 38.69 4.02
533 577 2.310327 TAGCATGCCGTAGCCAGGTG 62.310 60.000 15.66 0.00 38.69 4.00
534 578 2.032860 CTAGCATGCCGTAGCCAGGT 62.033 60.000 15.66 0.00 38.69 4.00
535 579 1.301244 CTAGCATGCCGTAGCCAGG 60.301 63.158 15.66 0.00 38.69 4.45
536 580 1.958205 GCTAGCATGCCGTAGCCAG 60.958 63.158 22.25 7.88 36.44 4.85
537 581 2.108976 GCTAGCATGCCGTAGCCA 59.891 61.111 22.25 0.00 36.44 4.75
594 10369 9.242477 GTAGTTCGGTTAGAATAGTAATTCACC 57.758 37.037 1.35 0.58 43.44 4.02
615 10390 6.260271 GCTTGTAGGTTTTCAGTTGAGTAGTT 59.740 38.462 0.00 0.00 0.00 2.24
670 10445 0.034477 GGGGCTTTCTCGGAAATCCA 60.034 55.000 16.09 0.00 35.14 3.41
686 10461 1.227380 CCGATTTCAGCTCGAGGGG 60.227 63.158 15.58 0.00 38.38 4.79
689 10464 1.281899 GAACCCGATTTCAGCTCGAG 58.718 55.000 8.45 8.45 38.38 4.04
1155 10968 0.981277 CCTCCACTATCCCCACCGTT 60.981 60.000 0.00 0.00 0.00 4.44
1164 10977 1.227674 CGCCCTTGCCTCCACTATC 60.228 63.158 0.00 0.00 0.00 2.08
1327 11140 2.192861 CCGTGAAGCACCCAAGCAA 61.193 57.895 0.00 0.00 36.85 3.91
1365 11178 1.745115 CTGATTGCCCTCGCGGAAA 60.745 57.895 6.13 0.00 38.08 3.13
1494 11307 1.373497 CTTGAAGAGCCGCTCGTGT 60.373 57.895 13.89 3.81 35.36 4.49
1539 11353 3.004315 TCCATTCTTCAAGAAACCAACGC 59.996 43.478 3.35 0.00 37.82 4.84
1540 11354 4.829064 TCCATTCTTCAAGAAACCAACG 57.171 40.909 3.35 0.00 37.82 4.10
1669 14058 3.521727 GGTCATATAGATCCACCCCACT 58.478 50.000 0.00 0.00 0.00 4.00
1706 14095 8.975295 TCCTCACATATGATATCTATGAACCAG 58.025 37.037 20.08 12.76 33.22 4.00
1707 14096 8.753133 GTCCTCACATATGATATCTATGAACCA 58.247 37.037 20.08 0.00 33.22 3.67
1708 14097 8.753133 TGTCCTCACATATGATATCTATGAACC 58.247 37.037 20.08 8.78 33.22 3.62
1756 14148 7.179269 ACTATGAGAGGAAGTAGAAAGAGTGT 58.821 38.462 0.00 0.00 0.00 3.55
1757 14149 7.338196 TGACTATGAGAGGAAGTAGAAAGAGTG 59.662 40.741 0.00 0.00 0.00 3.51
1797 14189 9.890629 AGTATGCTACAGTCTCAAAAATCATAA 57.109 29.630 0.00 0.00 0.00 1.90
1799 14191 9.539825 CTAGTATGCTACAGTCTCAAAAATCAT 57.460 33.333 0.00 0.00 0.00 2.45
1801 14193 7.492669 TGCTAGTATGCTACAGTCTCAAAAATC 59.507 37.037 0.00 0.00 0.00 2.17
1802 14194 7.331026 TGCTAGTATGCTACAGTCTCAAAAAT 58.669 34.615 0.00 0.00 0.00 1.82
1806 14198 5.360999 ACATGCTAGTATGCTACAGTCTCAA 59.639 40.000 19.44 0.00 0.00 3.02
1812 14204 7.277319 CCATAATCACATGCTAGTATGCTACAG 59.723 40.741 19.44 6.19 0.00 2.74
1879 14283 5.571357 GGTGATTTAACAGGCAACATAAACG 59.429 40.000 0.00 0.00 41.41 3.60
1936 14340 5.234543 GGAAATAGTGTATGTTTCTCGGCTC 59.765 44.000 0.00 0.00 38.63 4.70
1973 14377 2.534019 GCGTGCATGACATACGGGG 61.534 63.158 10.93 0.00 38.20 5.73
1981 14386 1.331756 CCATCTTTAGGCGTGCATGAC 59.668 52.381 10.93 6.96 0.00 3.06
1991 14396 0.842635 AGCCTCTGCCCATCTTTAGG 59.157 55.000 0.00 0.00 38.69 2.69
1998 14403 0.995024 AACTTGTAGCCTCTGCCCAT 59.005 50.000 0.00 0.00 38.69 4.00
2361 14770 9.205916 CTAATACGTGAATTACATTTGAAACGG 57.794 33.333 0.00 0.00 34.28 4.44
2362 14771 8.721476 GCTAATACGTGAATTACATTTGAAACG 58.279 33.333 0.00 0.00 35.98 3.60
2363 14772 9.006215 GGCTAATACGTGAATTACATTTGAAAC 57.994 33.333 0.00 0.00 0.00 2.78
2364 14773 8.952278 AGGCTAATACGTGAATTACATTTGAAA 58.048 29.630 0.00 0.00 0.00 2.69
2365 14774 8.500753 AGGCTAATACGTGAATTACATTTGAA 57.499 30.769 0.00 0.00 0.00 2.69
2366 14775 8.500753 AAGGCTAATACGTGAATTACATTTGA 57.499 30.769 0.00 0.00 0.00 2.69
2367 14776 9.009327 CAAAGGCTAATACGTGAATTACATTTG 57.991 33.333 0.00 7.19 0.00 2.32
2368 14777 8.736244 ACAAAGGCTAATACGTGAATTACATTT 58.264 29.630 0.00 0.00 0.00 2.32
2369 14778 8.276252 ACAAAGGCTAATACGTGAATTACATT 57.724 30.769 0.00 0.00 0.00 2.71
2370 14779 7.859325 ACAAAGGCTAATACGTGAATTACAT 57.141 32.000 0.00 0.00 0.00 2.29
2371 14780 7.361371 CCAACAAAGGCTAATACGTGAATTACA 60.361 37.037 0.00 0.00 0.00 2.41
2372 14781 6.964934 CCAACAAAGGCTAATACGTGAATTAC 59.035 38.462 0.00 0.00 0.00 1.89
2373 14782 6.094325 CCCAACAAAGGCTAATACGTGAATTA 59.906 38.462 0.00 0.00 0.00 1.40
2374 14783 5.105917 CCCAACAAAGGCTAATACGTGAATT 60.106 40.000 0.00 0.00 0.00 2.17
2375 14784 4.398044 CCCAACAAAGGCTAATACGTGAAT 59.602 41.667 0.00 0.00 0.00 2.57
2376 14785 3.754323 CCCAACAAAGGCTAATACGTGAA 59.246 43.478 0.00 0.00 0.00 3.18
2377 14786 3.244630 ACCCAACAAAGGCTAATACGTGA 60.245 43.478 0.00 0.00 0.00 4.35
2378 14787 3.078837 ACCCAACAAAGGCTAATACGTG 58.921 45.455 0.00 0.00 0.00 4.49
2379 14788 3.428413 ACCCAACAAAGGCTAATACGT 57.572 42.857 0.00 0.00 0.00 3.57
2380 14789 4.457949 AGAAACCCAACAAAGGCTAATACG 59.542 41.667 0.00 0.00 0.00 3.06
2381 14790 5.475564 TCAGAAACCCAACAAAGGCTAATAC 59.524 40.000 0.00 0.00 0.00 1.89
2382 14791 5.475564 GTCAGAAACCCAACAAAGGCTAATA 59.524 40.000 0.00 0.00 0.00 0.98
2383 14792 4.280929 GTCAGAAACCCAACAAAGGCTAAT 59.719 41.667 0.00 0.00 0.00 1.73
2384 14793 3.634910 GTCAGAAACCCAACAAAGGCTAA 59.365 43.478 0.00 0.00 0.00 3.09
2385 14794 3.117663 AGTCAGAAACCCAACAAAGGCTA 60.118 43.478 0.00 0.00 0.00 3.93
2386 14795 2.031870 GTCAGAAACCCAACAAAGGCT 58.968 47.619 0.00 0.00 0.00 4.58
2387 14796 2.031870 AGTCAGAAACCCAACAAAGGC 58.968 47.619 0.00 0.00 0.00 4.35
2388 14797 4.736126 AAAGTCAGAAACCCAACAAAGG 57.264 40.909 0.00 0.00 0.00 3.11
2389 14798 6.636850 CGATTAAAGTCAGAAACCCAACAAAG 59.363 38.462 0.00 0.00 0.00 2.77
2390 14799 6.319152 TCGATTAAAGTCAGAAACCCAACAAA 59.681 34.615 0.00 0.00 0.00 2.83
2391 14800 5.823570 TCGATTAAAGTCAGAAACCCAACAA 59.176 36.000 0.00 0.00 0.00 2.83
2392 14801 5.369833 TCGATTAAAGTCAGAAACCCAACA 58.630 37.500 0.00 0.00 0.00 3.33
2393 14802 5.934935 TCGATTAAAGTCAGAAACCCAAC 57.065 39.130 0.00 0.00 0.00 3.77
2394 14803 7.229707 TGAAATCGATTAAAGTCAGAAACCCAA 59.770 33.333 11.83 0.00 0.00 4.12
2395 14804 6.712998 TGAAATCGATTAAAGTCAGAAACCCA 59.287 34.615 11.83 0.00 0.00 4.51
2396 14805 7.021790 GTGAAATCGATTAAAGTCAGAAACCC 58.978 38.462 11.83 0.00 0.00 4.11
2397 14806 7.021790 GGTGAAATCGATTAAAGTCAGAAACC 58.978 38.462 11.83 5.32 0.00 3.27
2398 14807 6.736853 CGGTGAAATCGATTAAAGTCAGAAAC 59.263 38.462 11.83 0.00 0.00 2.78
2399 14808 6.425721 ACGGTGAAATCGATTAAAGTCAGAAA 59.574 34.615 11.83 0.00 0.00 2.52
2400 14809 5.929992 ACGGTGAAATCGATTAAAGTCAGAA 59.070 36.000 11.83 0.00 0.00 3.02
2401 14810 5.475719 ACGGTGAAATCGATTAAAGTCAGA 58.524 37.500 11.83 0.00 0.00 3.27
2402 14811 5.779806 ACGGTGAAATCGATTAAAGTCAG 57.220 39.130 11.83 3.56 0.00 3.51
2403 14812 6.548441 AAACGGTGAAATCGATTAAAGTCA 57.452 33.333 11.83 8.59 0.00 3.41
2404 14813 7.377662 ACAAAAACGGTGAAATCGATTAAAGTC 59.622 33.333 11.83 5.85 0.00 3.01
2405 14814 7.197703 ACAAAAACGGTGAAATCGATTAAAGT 58.802 30.769 11.83 5.10 0.00 2.66
2406 14815 7.617533 ACAAAAACGGTGAAATCGATTAAAG 57.382 32.000 11.83 4.49 0.00 1.85
2407 14816 7.988904 AACAAAAACGGTGAAATCGATTAAA 57.011 28.000 11.83 0.00 0.00 1.52
2408 14817 7.916450 AGAAACAAAAACGGTGAAATCGATTAA 59.084 29.630 11.83 0.00 0.00 1.40
2409 14818 7.419204 AGAAACAAAAACGGTGAAATCGATTA 58.581 30.769 11.83 0.00 0.00 1.75
2410 14819 6.270064 AGAAACAAAAACGGTGAAATCGATT 58.730 32.000 4.39 4.39 0.00 3.34
2411 14820 5.827666 AGAAACAAAAACGGTGAAATCGAT 58.172 33.333 0.00 0.00 0.00 3.59
2412 14821 5.065474 AGAGAAACAAAAACGGTGAAATCGA 59.935 36.000 0.00 0.00 0.00 3.59
2413 14822 5.270853 AGAGAAACAAAAACGGTGAAATCG 58.729 37.500 0.00 0.00 0.00 3.34
2414 14823 6.198403 GGAAGAGAAACAAAAACGGTGAAATC 59.802 38.462 0.00 0.00 0.00 2.17
2415 14824 6.040247 GGAAGAGAAACAAAAACGGTGAAAT 58.960 36.000 0.00 0.00 0.00 2.17
2416 14825 5.184287 AGGAAGAGAAACAAAAACGGTGAAA 59.816 36.000 0.00 0.00 0.00 2.69
2417 14826 4.703093 AGGAAGAGAAACAAAAACGGTGAA 59.297 37.500 0.00 0.00 0.00 3.18
2418 14827 4.266714 AGGAAGAGAAACAAAAACGGTGA 58.733 39.130 0.00 0.00 0.00 4.02
2419 14828 4.497507 GGAGGAAGAGAAACAAAAACGGTG 60.498 45.833 0.00 0.00 0.00 4.94
2420 14829 3.630769 GGAGGAAGAGAAACAAAAACGGT 59.369 43.478 0.00 0.00 0.00 4.83
2421 14830 3.883489 AGGAGGAAGAGAAACAAAAACGG 59.117 43.478 0.00 0.00 0.00 4.44
2422 14831 5.163652 ACAAGGAGGAAGAGAAACAAAAACG 60.164 40.000 0.00 0.00 0.00 3.60
2423 14832 6.095580 AGACAAGGAGGAAGAGAAACAAAAAC 59.904 38.462 0.00 0.00 0.00 2.43
2424 14833 6.095440 CAGACAAGGAGGAAGAGAAACAAAAA 59.905 38.462 0.00 0.00 0.00 1.94
2425 14834 5.590259 CAGACAAGGAGGAAGAGAAACAAAA 59.410 40.000 0.00 0.00 0.00 2.44
2426 14835 5.126067 CAGACAAGGAGGAAGAGAAACAAA 58.874 41.667 0.00 0.00 0.00 2.83
2427 14836 4.708177 CAGACAAGGAGGAAGAGAAACAA 58.292 43.478 0.00 0.00 0.00 2.83
2428 14837 3.495100 GCAGACAAGGAGGAAGAGAAACA 60.495 47.826 0.00 0.00 0.00 2.83
2429 14838 3.070748 GCAGACAAGGAGGAAGAGAAAC 58.929 50.000 0.00 0.00 0.00 2.78
2430 14839 2.039084 GGCAGACAAGGAGGAAGAGAAA 59.961 50.000 0.00 0.00 0.00 2.52
2431 14840 1.625818 GGCAGACAAGGAGGAAGAGAA 59.374 52.381 0.00 0.00 0.00 2.87
2432 14841 1.270907 GGCAGACAAGGAGGAAGAGA 58.729 55.000 0.00 0.00 0.00 3.10
2433 14842 0.251634 GGGCAGACAAGGAGGAAGAG 59.748 60.000 0.00 0.00 0.00 2.85
2434 14843 0.178891 AGGGCAGACAAGGAGGAAGA 60.179 55.000 0.00 0.00 0.00 2.87
2435 14844 0.251634 GAGGGCAGACAAGGAGGAAG 59.748 60.000 0.00 0.00 0.00 3.46
2436 14845 0.178891 AGAGGGCAGACAAGGAGGAA 60.179 55.000 0.00 0.00 0.00 3.36
2437 14846 0.616111 GAGAGGGCAGACAAGGAGGA 60.616 60.000 0.00 0.00 0.00 3.71
2438 14847 0.617249 AGAGAGGGCAGACAAGGAGG 60.617 60.000 0.00 0.00 0.00 4.30
2439 14848 1.206849 GAAGAGAGGGCAGACAAGGAG 59.793 57.143 0.00 0.00 0.00 3.69
2440 14849 1.270907 GAAGAGAGGGCAGACAAGGA 58.729 55.000 0.00 0.00 0.00 3.36
2441 14850 0.108424 CGAAGAGAGGGCAGACAAGG 60.108 60.000 0.00 0.00 0.00 3.61
2442 14851 0.891373 TCGAAGAGAGGGCAGACAAG 59.109 55.000 0.00 0.00 0.00 3.16
2443 14852 1.561643 ATCGAAGAGAGGGCAGACAA 58.438 50.000 0.00 0.00 43.63 3.18
2444 14853 1.205655 CAATCGAAGAGAGGGCAGACA 59.794 52.381 0.00 0.00 43.63 3.41
2445 14854 1.205893 ACAATCGAAGAGAGGGCAGAC 59.794 52.381 0.00 0.00 43.63 3.51
2446 14855 1.478510 GACAATCGAAGAGAGGGCAGA 59.521 52.381 0.00 0.00 43.63 4.26
2447 14856 1.472376 GGACAATCGAAGAGAGGGCAG 60.472 57.143 0.00 0.00 43.63 4.85
2448 14857 0.537188 GGACAATCGAAGAGAGGGCA 59.463 55.000 0.00 0.00 43.63 5.36
2449 14858 0.528684 CGGACAATCGAAGAGAGGGC 60.529 60.000 0.00 0.00 43.63 5.19
2450 14859 0.528684 GCGGACAATCGAAGAGAGGG 60.529 60.000 0.00 0.00 43.63 4.30
2451 14860 0.457851 AGCGGACAATCGAAGAGAGG 59.542 55.000 0.00 0.00 43.63 3.69
2452 14861 1.554392 CAGCGGACAATCGAAGAGAG 58.446 55.000 0.00 0.00 43.63 3.20
2453 14862 0.458543 GCAGCGGACAATCGAAGAGA 60.459 55.000 0.00 0.00 43.63 3.10
2454 14863 1.424493 GGCAGCGGACAATCGAAGAG 61.424 60.000 0.00 0.00 43.63 2.85
2455 14864 1.447838 GGCAGCGGACAATCGAAGA 60.448 57.895 0.00 0.00 45.75 2.87
2456 14865 1.091771 ATGGCAGCGGACAATCGAAG 61.092 55.000 0.00 0.00 34.11 3.79
2457 14866 1.078497 ATGGCAGCGGACAATCGAA 60.078 52.632 0.00 0.00 34.11 3.71
2458 14867 1.521457 GATGGCAGCGGACAATCGA 60.521 57.895 0.00 0.00 34.11 3.59
2459 14868 1.162181 ATGATGGCAGCGGACAATCG 61.162 55.000 0.00 0.00 34.11 3.34
2460 14869 0.590195 GATGATGGCAGCGGACAATC 59.410 55.000 0.00 0.00 34.11 2.67
2461 14870 0.820891 GGATGATGGCAGCGGACAAT 60.821 55.000 0.00 0.00 34.11 2.71
2462 14871 1.451927 GGATGATGGCAGCGGACAA 60.452 57.895 0.00 0.00 34.11 3.18
2463 14872 1.048160 TAGGATGATGGCAGCGGACA 61.048 55.000 0.00 0.00 35.65 4.02
2464 14873 0.106708 TTAGGATGATGGCAGCGGAC 59.893 55.000 0.00 0.00 0.00 4.79
2465 14874 0.106708 GTTAGGATGATGGCAGCGGA 59.893 55.000 0.00 0.00 0.00 5.54
2466 14875 0.886490 GGTTAGGATGATGGCAGCGG 60.886 60.000 0.00 0.00 0.00 5.52
2467 14876 1.224069 CGGTTAGGATGATGGCAGCG 61.224 60.000 0.00 0.00 0.00 5.18
2468 14877 0.179045 ACGGTTAGGATGATGGCAGC 60.179 55.000 0.00 0.00 0.00 5.25
2469 14878 1.869754 CGACGGTTAGGATGATGGCAG 60.870 57.143 0.00 0.00 0.00 4.85
2470 14879 0.104120 CGACGGTTAGGATGATGGCA 59.896 55.000 0.00 0.00 0.00 4.92
2471 14880 0.104304 ACGACGGTTAGGATGATGGC 59.896 55.000 0.00 0.00 0.00 4.40
2472 14881 2.159156 TGAACGACGGTTAGGATGATGG 60.159 50.000 0.00 0.00 36.24 3.51
2473 14882 2.858344 GTGAACGACGGTTAGGATGATG 59.142 50.000 0.00 0.00 36.24 3.07
2474 14883 2.159142 GGTGAACGACGGTTAGGATGAT 60.159 50.000 0.00 0.00 36.24 2.45
2475 14884 1.203052 GGTGAACGACGGTTAGGATGA 59.797 52.381 0.00 0.00 36.24 2.92
2476 14885 1.636988 GGTGAACGACGGTTAGGATG 58.363 55.000 0.00 0.00 36.24 3.51
2489 14898 1.195448 CAAGCATGAGTGACGGTGAAC 59.805 52.381 0.00 0.00 0.00 3.18
2490 14899 1.069978 TCAAGCATGAGTGACGGTGAA 59.930 47.619 0.00 0.00 0.00 3.18
2491 14900 0.678950 TCAAGCATGAGTGACGGTGA 59.321 50.000 0.00 0.00 0.00 4.02
2492 14901 1.395954 CATCAAGCATGAGTGACGGTG 59.604 52.381 0.00 0.00 39.39 4.94
2493 14902 1.002430 ACATCAAGCATGAGTGACGGT 59.998 47.619 0.00 0.00 39.39 4.83
2494 14903 1.662629 GACATCAAGCATGAGTGACGG 59.337 52.381 0.00 0.00 39.39 4.79
2495 14904 1.322637 CGACATCAAGCATGAGTGACG 59.677 52.381 0.00 5.12 39.39 4.35
2496 14905 1.061711 GCGACATCAAGCATGAGTGAC 59.938 52.381 0.00 0.00 39.39 3.67
2497 14906 1.066645 AGCGACATCAAGCATGAGTGA 60.067 47.619 0.00 0.00 39.39 3.41
2498 14907 1.062148 CAGCGACATCAAGCATGAGTG 59.938 52.381 0.00 0.00 39.39 3.51
2499 14908 1.366679 CAGCGACATCAAGCATGAGT 58.633 50.000 0.00 0.00 39.39 3.41
2500 14909 0.027716 GCAGCGACATCAAGCATGAG 59.972 55.000 0.00 0.00 39.39 2.90
2501 14910 1.371337 GGCAGCGACATCAAGCATGA 61.371 55.000 0.00 0.00 40.57 3.07
2502 14911 1.063649 GGCAGCGACATCAAGCATG 59.936 57.895 0.00 0.00 38.64 4.06
2503 14912 1.377594 TGGCAGCGACATCAAGCAT 60.378 52.632 0.00 0.00 35.48 3.79
2504 14913 2.032376 TGGCAGCGACATCAAGCA 59.968 55.556 0.00 0.00 35.48 3.91
2505 14914 2.482374 GTGGCAGCGACATCAAGC 59.518 61.111 2.08 0.00 0.00 4.01
2506 14915 2.401766 GGGTGGCAGCGACATCAAG 61.402 63.158 10.99 0.00 0.00 3.02
2507 14916 2.359850 GGGTGGCAGCGACATCAA 60.360 61.111 10.99 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.