Multiple sequence alignment - TraesCS6A01G326200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G326200 chr6A 100.000 4996 0 0 1 4996 559522506 559527501 0.000000e+00 9226.0
1 TraesCS6A01G326200 chr6A 80.714 1540 251 36 2409 3931 8696393 8694883 0.000000e+00 1157.0
2 TraesCS6A01G326200 chr6A 82.360 788 123 11 1195 1971 8699769 8698987 0.000000e+00 671.0
3 TraesCS6A01G326200 chr6A 89.231 65 3 2 1659 1723 13447904 13447964 1.490000e-10 78.7
4 TraesCS6A01G326200 chr6B 92.958 3749 146 51 607 4268 625241076 625244793 0.000000e+00 5352.0
5 TraesCS6A01G326200 chr6B 85.587 673 86 10 2428 3093 15132311 15132979 0.000000e+00 695.0
6 TraesCS6A01G326200 chr6B 82.120 783 125 11 1192 1965 15128644 15129420 0.000000e+00 656.0
7 TraesCS6A01G326200 chr6B 88.629 299 21 6 4695 4985 578001779 578001486 7.960000e-93 351.0
8 TraesCS6A01G326200 chr6B 89.362 141 15 0 4321 4461 625244795 625244935 1.430000e-40 178.0
9 TraesCS6A01G326200 chr6B 77.982 218 14 12 376 576 625240879 625241079 6.840000e-19 106.0
10 TraesCS6A01G326200 chr6D 91.478 2476 106 34 2006 4404 414624629 414622182 0.000000e+00 3306.0
11 TraesCS6A01G326200 chr6D 94.798 1384 49 7 621 1998 414626034 414624668 0.000000e+00 2135.0
12 TraesCS6A01G326200 chr6D 80.809 1433 228 36 2409 3822 8151917 8150513 0.000000e+00 1079.0
13 TraesCS6A01G326200 chr6D 80.706 793 130 15 1195 1971 8155556 8154771 3.330000e-166 595.0
14 TraesCS6A01G326200 chr6D 84.577 201 10 9 1 200 414627673 414627493 3.970000e-41 180.0
15 TraesCS6A01G326200 chr7A 78.305 1180 210 38 2643 3811 43181950 43180806 0.000000e+00 719.0
16 TraesCS6A01G326200 chr7A 82.542 842 116 28 1142 1963 43185304 43184474 0.000000e+00 712.0
17 TraesCS6A01G326200 chr7A 87.960 299 23 3 4695 4985 54672591 54672884 1.720000e-89 340.0
18 TraesCS6A01G326200 chr7A 83.962 212 32 2 2434 2644 43182282 43182072 8.480000e-48 202.0
19 TraesCS6A01G326200 chr7D 77.627 1180 218 38 2643 3811 43215694 43216838 0.000000e+00 675.0
20 TraesCS6A01G326200 chr7D 81.250 848 125 24 1142 1963 43212538 43213377 0.000000e+00 654.0
21 TraesCS6A01G326200 chr7D 83.568 213 31 4 2434 2644 43215382 43215592 3.950000e-46 196.0
22 TraesCS6A01G326200 chr4A 82.025 790 118 20 1192 1963 651366139 651366922 0.000000e+00 651.0
23 TraesCS6A01G326200 chr4A 84.507 213 29 4 2434 2644 651368565 651368775 1.820000e-49 207.0
24 TraesCS6A01G326200 chr2A 88.963 299 20 2 4695 4985 664873294 664873001 1.710000e-94 357.0
25 TraesCS6A01G326200 chr2A 88.294 299 22 6 4695 4985 578036283 578035990 3.700000e-91 346.0
26 TraesCS6A01G326200 chr2A 87.625 299 24 3 4695 4985 577440410 577440117 8.010000e-88 335.0
27 TraesCS6A01G326200 chr2A 86.957 299 26 5 4695 4985 577443446 577443153 1.730000e-84 324.0
28 TraesCS6A01G326200 chr2D 88.294 299 22 3 4695 4985 561214025 561214318 3.700000e-91 346.0
29 TraesCS6A01G326200 chr5D 87.960 299 23 5 4695 4985 185256260 185256553 1.720000e-89 340.0
30 TraesCS6A01G326200 chr2B 87.000 300 24 3 4696 4985 714257316 714257022 1.730000e-84 324.0
31 TraesCS6A01G326200 chr1A 86.957 299 26 2 4695 4985 439927042 439926749 1.730000e-84 324.0
32 TraesCS6A01G326200 chr5B 89.231 65 3 2 1659 1723 591661945 591662005 1.490000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G326200 chr6A 559522506 559527501 4995 False 9226.000000 9226 100.000000 1 4996 1 chr6A.!!$F2 4995
1 TraesCS6A01G326200 chr6A 8694883 8699769 4886 True 914.000000 1157 81.537000 1195 3931 2 chr6A.!!$R1 2736
2 TraesCS6A01G326200 chr6B 625240879 625244935 4056 False 1878.666667 5352 86.767333 376 4461 3 chr6B.!!$F2 4085
3 TraesCS6A01G326200 chr6B 15128644 15132979 4335 False 675.500000 695 83.853500 1192 3093 2 chr6B.!!$F1 1901
4 TraesCS6A01G326200 chr6D 414622182 414627673 5491 True 1873.666667 3306 90.284333 1 4404 3 chr6D.!!$R2 4403
5 TraesCS6A01G326200 chr6D 8150513 8155556 5043 True 837.000000 1079 80.757500 1195 3822 2 chr6D.!!$R1 2627
6 TraesCS6A01G326200 chr7A 43180806 43185304 4498 True 544.333333 719 81.603000 1142 3811 3 chr7A.!!$R1 2669
7 TraesCS6A01G326200 chr7D 43212538 43216838 4300 False 508.333333 675 80.815000 1142 3811 3 chr7D.!!$F1 2669
8 TraesCS6A01G326200 chr4A 651366139 651368775 2636 False 429.000000 651 83.266000 1192 2644 2 chr4A.!!$F1 1452
9 TraesCS6A01G326200 chr2A 577440117 577443446 3329 True 329.500000 335 87.291000 4695 4985 2 chr2A.!!$R3 290

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
311 451 0.036388 GAGCCCGTCATTCAGGACAA 60.036 55.0 0.0 0.0 37.66 3.18 F
602 1666 0.107654 CCCCGCCCAAAAACACAAAA 60.108 50.0 0.0 0.0 0.00 2.44 F
1098 2175 0.257616 ACCTCTTCTCCTCCTCCTCG 59.742 60.0 0.0 0.0 0.00 4.63 F
1099 2176 0.467290 CCTCTTCTCCTCCTCCTCGG 60.467 65.0 0.0 0.0 0.00 4.63 F
2254 3418 0.541998 ACTGACATCACCCCTGTCGA 60.542 55.0 0.0 0.0 44.77 4.20 F
3101 9235 0.680280 GCACCGACTACTCCTCTCCA 60.680 60.0 0.0 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2069 3202 1.079127 CTCCGGCTTGTACCACCAG 60.079 63.158 0.00 0.0 0.00 4.00 R
2399 8407 1.007387 GCCACCGCCTGTCAAAAAG 60.007 57.895 0.00 0.0 0.00 2.27 R
2495 8503 1.740296 CTTGCCGTACTTGGTCGGG 60.740 63.158 5.78 0.0 45.85 5.14 R
2717 8848 3.605749 CTGCGTGGGGTGGTCGAAT 62.606 63.158 0.00 0.0 0.00 3.34 R
3953 10105 0.822164 CGAGGTCGTACCCCATCTTT 59.178 55.000 1.06 0.0 39.75 2.52 R
4532 10751 0.037975 GGGGTGCTGCAACAAATCAG 60.038 55.000 20.65 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.680055 CATTTGAAACGGAAAGTTCATCAG 57.320 37.500 0.00 0.00 43.37 2.90
25 26 5.418310 TTGAAACGGAAAGTTCATCAGAC 57.582 39.130 0.00 0.00 43.37 3.51
26 27 4.447290 TGAAACGGAAAGTTCATCAGACA 58.553 39.130 0.00 0.00 43.37 3.41
27 28 5.063204 TGAAACGGAAAGTTCATCAGACAT 58.937 37.500 0.00 0.00 43.37 3.06
28 29 5.179368 TGAAACGGAAAGTTCATCAGACATC 59.821 40.000 0.00 0.00 43.37 3.06
29 30 3.254060 ACGGAAAGTTCATCAGACATCG 58.746 45.455 0.00 0.00 0.00 3.84
30 31 3.254060 CGGAAAGTTCATCAGACATCGT 58.746 45.455 0.00 0.00 0.00 3.73
66 67 1.526917 GGTTGGATCCGCCCATCTG 60.527 63.158 13.32 0.00 35.87 2.90
84 85 3.430862 CGTTGCGTCCACCATGGG 61.431 66.667 18.09 4.89 38.32 4.00
86 87 1.602323 GTTGCGTCCACCATGGGAA 60.602 57.895 18.09 0.00 39.05 3.97
88 89 3.124921 GCGTCCACCATGGGAACG 61.125 66.667 23.53 23.53 39.05 3.95
89 90 2.435938 CGTCCACCATGGGAACGG 60.436 66.667 18.09 10.91 39.05 4.44
108 109 0.533755 GGTGCTGCAGATTAGCCGAT 60.534 55.000 20.43 0.00 40.42 4.18
113 114 4.092091 GTGCTGCAGATTAGCCGATTATAC 59.908 45.833 20.43 0.00 40.42 1.47
115 116 5.185056 TGCTGCAGATTAGCCGATTATACTA 59.815 40.000 20.43 0.00 40.42 1.82
116 117 5.746245 GCTGCAGATTAGCCGATTATACTAG 59.254 44.000 20.43 0.00 35.15 2.57
117 118 6.404844 GCTGCAGATTAGCCGATTATACTAGA 60.405 42.308 20.43 0.00 35.15 2.43
118 119 6.853720 TGCAGATTAGCCGATTATACTAGAC 58.146 40.000 0.00 0.00 0.00 2.59
119 120 6.659668 TGCAGATTAGCCGATTATACTAGACT 59.340 38.462 0.00 0.00 0.00 3.24
120 121 7.827729 TGCAGATTAGCCGATTATACTAGACTA 59.172 37.037 0.00 0.00 0.00 2.59
121 122 8.339714 GCAGATTAGCCGATTATACTAGACTAG 58.660 40.741 8.00 8.00 0.00 2.57
122 123 8.832521 CAGATTAGCCGATTATACTAGACTAGG 58.167 40.741 14.03 0.00 0.00 3.02
123 124 8.770322 AGATTAGCCGATTATACTAGACTAGGA 58.230 37.037 14.03 5.58 0.00 2.94
124 125 9.563748 GATTAGCCGATTATACTAGACTAGGAT 57.436 37.037 12.02 12.02 32.95 3.24
125 126 9.924010 ATTAGCCGATTATACTAGACTAGGATT 57.076 33.333 12.58 0.00 30.32 3.01
151 152 8.443953 AAACTAGTATGATCATTGGAAGAAGC 57.556 34.615 14.65 0.00 0.00 3.86
156 157 5.902613 ATGATCATTGGAAGAAGCGAAAA 57.097 34.783 1.18 0.00 0.00 2.29
157 158 5.300969 TGATCATTGGAAGAAGCGAAAAG 57.699 39.130 0.00 0.00 0.00 2.27
158 159 5.003160 TGATCATTGGAAGAAGCGAAAAGA 58.997 37.500 0.00 0.00 0.00 2.52
159 160 5.473162 TGATCATTGGAAGAAGCGAAAAGAA 59.527 36.000 0.00 0.00 0.00 2.52
188 189 0.251386 AGGAGAAGCCACACGAGAGA 60.251 55.000 0.00 0.00 40.02 3.10
191 192 1.446966 GAAGCCACACGAGAGAGCC 60.447 63.158 0.00 0.00 0.00 4.70
222 347 0.515564 CGGTACTTTTCTTGCACCCG 59.484 55.000 0.00 0.00 0.00 5.28
223 348 1.601166 GGTACTTTTCTTGCACCCGT 58.399 50.000 0.00 0.00 0.00 5.28
232 372 2.463589 CTTGCACCCGTGGAGGCTAA 62.464 60.000 0.00 0.00 39.21 3.09
254 394 5.622770 ATTTTCCACGCCAAAAGTAGTAG 57.377 39.130 0.00 0.00 0.00 2.57
255 395 3.756933 TTCCACGCCAAAAGTAGTAGT 57.243 42.857 0.00 0.00 0.00 2.73
257 397 4.870123 TCCACGCCAAAAGTAGTAGTAA 57.130 40.909 0.00 0.00 0.00 2.24
262 402 4.630069 ACGCCAAAAGTAGTAGTAATGCAG 59.370 41.667 0.00 0.00 0.00 4.41
265 405 6.479001 CGCCAAAAGTAGTAGTAATGCAGTAT 59.521 38.462 0.00 0.00 0.00 2.12
266 406 7.650504 CGCCAAAAGTAGTAGTAATGCAGTATA 59.349 37.037 0.00 0.00 0.00 1.47
271 411 9.530633 AAAGTAGTAGTAATGCAGTATAGTTGC 57.469 33.333 0.00 2.85 41.86 4.17
273 413 8.353684 AGTAGTAGTAATGCAGTATAGTTGCTG 58.646 37.037 0.00 0.00 42.02 4.41
282 422 4.901814 CAGTATAGTTGCTGCATGTGTTC 58.098 43.478 1.84 0.00 0.00 3.18
283 423 4.392754 CAGTATAGTTGCTGCATGTGTTCA 59.607 41.667 1.84 0.00 0.00 3.18
285 425 4.852134 ATAGTTGCTGCATGTGTTCAAA 57.148 36.364 1.84 0.00 0.00 2.69
286 426 3.738830 AGTTGCTGCATGTGTTCAAAT 57.261 38.095 1.84 0.00 0.00 2.32
287 427 3.645884 AGTTGCTGCATGTGTTCAAATC 58.354 40.909 1.84 0.00 0.00 2.17
288 428 3.068448 AGTTGCTGCATGTGTTCAAATCA 59.932 39.130 1.84 0.00 0.00 2.57
289 429 3.015934 TGCTGCATGTGTTCAAATCAC 57.984 42.857 0.00 0.00 36.48 3.06
291 431 2.727798 GCTGCATGTGTTCAAATCACAC 59.272 45.455 0.00 0.00 46.26 3.82
292 432 2.975193 CTGCATGTGTTCAAATCACACG 59.025 45.455 0.89 0.00 46.47 4.49
293 433 2.615912 TGCATGTGTTCAAATCACACGA 59.384 40.909 0.89 0.00 46.47 4.35
294 434 3.228749 GCATGTGTTCAAATCACACGAG 58.771 45.455 0.89 0.00 46.47 4.18
295 435 3.228749 CATGTGTTCAAATCACACGAGC 58.771 45.455 0.89 0.00 46.47 5.03
296 436 1.601903 TGTGTTCAAATCACACGAGCC 59.398 47.619 0.00 0.00 46.47 4.70
297 437 1.069227 GTGTTCAAATCACACGAGCCC 60.069 52.381 0.00 0.00 35.50 5.19
298 438 0.165944 GTTCAAATCACACGAGCCCG 59.834 55.000 0.00 0.00 42.50 6.13
308 448 2.892640 CGAGCCCGTCATTCAGGA 59.107 61.111 0.00 0.00 0.00 3.86
309 449 1.519455 CGAGCCCGTCATTCAGGAC 60.519 63.158 0.00 0.00 34.42 3.85
311 451 0.036388 GAGCCCGTCATTCAGGACAA 60.036 55.000 0.00 0.00 37.66 3.18
312 452 0.321653 AGCCCGTCATTCAGGACAAC 60.322 55.000 0.00 0.00 37.66 3.32
313 453 0.605319 GCCCGTCATTCAGGACAACA 60.605 55.000 0.00 0.00 37.66 3.33
314 454 1.156736 CCCGTCATTCAGGACAACAC 58.843 55.000 0.00 0.00 37.66 3.32
315 455 1.542328 CCCGTCATTCAGGACAACACA 60.542 52.381 0.00 0.00 37.66 3.72
316 456 1.531149 CCGTCATTCAGGACAACACAC 59.469 52.381 0.00 0.00 37.66 3.82
317 457 2.209273 CGTCATTCAGGACAACACACA 58.791 47.619 0.00 0.00 37.66 3.72
318 458 2.032894 CGTCATTCAGGACAACACACAC 60.033 50.000 0.00 0.00 37.66 3.82
320 460 3.248602 GTCATTCAGGACAACACACACTC 59.751 47.826 0.00 0.00 37.73 3.51
321 461 3.134623 TCATTCAGGACAACACACACTCT 59.865 43.478 0.00 0.00 0.00 3.24
322 462 3.627395 TTCAGGACAACACACACTCTT 57.373 42.857 0.00 0.00 0.00 2.85
323 463 3.179443 TCAGGACAACACACACTCTTC 57.821 47.619 0.00 0.00 0.00 2.87
324 464 2.158957 TCAGGACAACACACACTCTTCC 60.159 50.000 0.00 0.00 0.00 3.46
326 466 1.940613 GGACAACACACACTCTTCCAC 59.059 52.381 0.00 0.00 0.00 4.02
327 467 1.593006 GACAACACACACTCTTCCACG 59.407 52.381 0.00 0.00 0.00 4.94
329 469 0.814010 AACACACACTCTTCCACGGC 60.814 55.000 0.00 0.00 0.00 5.68
330 470 1.227527 CACACACTCTTCCACGGCA 60.228 57.895 0.00 0.00 0.00 5.69
331 471 0.603707 CACACACTCTTCCACGGCAT 60.604 55.000 0.00 0.00 0.00 4.40
332 472 0.108585 ACACACTCTTCCACGGCATT 59.891 50.000 0.00 0.00 0.00 3.56
333 473 0.798776 CACACTCTTCCACGGCATTC 59.201 55.000 0.00 0.00 0.00 2.67
335 475 0.798776 CACTCTTCCACGGCATTCAC 59.201 55.000 0.00 0.00 0.00 3.18
336 476 0.321653 ACTCTTCCACGGCATTCACC 60.322 55.000 0.00 0.00 0.00 4.02
344 484 2.190578 GGCATTCACCGCCTAGCT 59.809 61.111 0.00 0.00 46.56 3.32
345 485 1.452108 GGCATTCACCGCCTAGCTT 60.452 57.895 0.00 0.00 46.56 3.74
348 488 1.330829 GCATTCACCGCCTAGCTTTAC 59.669 52.381 0.00 0.00 0.00 2.01
350 490 3.206150 CATTCACCGCCTAGCTTTACAT 58.794 45.455 0.00 0.00 0.00 2.29
351 491 4.377021 CATTCACCGCCTAGCTTTACATA 58.623 43.478 0.00 0.00 0.00 2.29
352 492 4.682778 TTCACCGCCTAGCTTTACATAT 57.317 40.909 0.00 0.00 0.00 1.78
353 493 4.252971 TCACCGCCTAGCTTTACATATC 57.747 45.455 0.00 0.00 0.00 1.63
354 494 3.006537 TCACCGCCTAGCTTTACATATCC 59.993 47.826 0.00 0.00 0.00 2.59
355 495 2.969950 ACCGCCTAGCTTTACATATCCA 59.030 45.455 0.00 0.00 0.00 3.41
357 497 4.184629 CCGCCTAGCTTTACATATCCATC 58.815 47.826 0.00 0.00 0.00 3.51
358 498 4.322725 CCGCCTAGCTTTACATATCCATCA 60.323 45.833 0.00 0.00 0.00 3.07
359 499 5.237815 CGCCTAGCTTTACATATCCATCAA 58.762 41.667 0.00 0.00 0.00 2.57
361 501 6.372659 CGCCTAGCTTTACATATCCATCAATT 59.627 38.462 0.00 0.00 0.00 2.32
362 502 7.533426 GCCTAGCTTTACATATCCATCAATTG 58.467 38.462 0.00 0.00 0.00 2.32
363 503 7.175641 GCCTAGCTTTACATATCCATCAATTGT 59.824 37.037 5.13 0.00 0.00 2.71
364 504 8.509690 CCTAGCTTTACATATCCATCAATTGTG 58.490 37.037 5.13 3.40 0.00 3.33
365 505 6.742109 AGCTTTACATATCCATCAATTGTGC 58.258 36.000 5.13 0.00 0.00 4.57
366 506 6.321945 AGCTTTACATATCCATCAATTGTGCA 59.678 34.615 5.13 0.00 0.00 4.57
367 507 7.014905 AGCTTTACATATCCATCAATTGTGCAT 59.985 33.333 5.13 0.00 0.00 3.96
368 508 7.115805 GCTTTACATATCCATCAATTGTGCATG 59.884 37.037 5.13 2.06 0.00 4.06
369 509 7.585579 TTACATATCCATCAATTGTGCATGT 57.414 32.000 5.13 12.84 0.00 3.21
370 510 5.838529 ACATATCCATCAATTGTGCATGTG 58.161 37.500 5.13 6.30 0.00 3.21
371 511 2.658373 TCCATCAATTGTGCATGTGC 57.342 45.000 5.13 0.00 42.50 4.57
372 512 1.135344 TCCATCAATTGTGCATGTGCG 60.135 47.619 5.13 0.00 45.83 5.34
388 1156 1.599542 GTGCGCCATGATTAGACTTCC 59.400 52.381 4.18 0.00 0.00 3.46
401 1169 2.490991 AGACTTCCTTGTACCGTTTGC 58.509 47.619 0.00 0.00 0.00 3.68
406 1174 1.571215 CCTTGTACCGTTTGCCGACC 61.571 60.000 0.00 0.00 39.56 4.79
417 1185 1.886886 TTGCCGACCAACTTAACTCC 58.113 50.000 0.00 0.00 0.00 3.85
418 1186 0.759959 TGCCGACCAACTTAACTCCA 59.240 50.000 0.00 0.00 0.00 3.86
419 1187 1.349688 TGCCGACCAACTTAACTCCAT 59.650 47.619 0.00 0.00 0.00 3.41
420 1188 2.568062 TGCCGACCAACTTAACTCCATA 59.432 45.455 0.00 0.00 0.00 2.74
422 1190 3.621715 GCCGACCAACTTAACTCCATAAG 59.378 47.826 0.00 0.00 38.56 1.73
424 1192 4.868734 CCGACCAACTTAACTCCATAAGAC 59.131 45.833 1.38 0.00 36.57 3.01
425 1193 5.337330 CCGACCAACTTAACTCCATAAGACT 60.337 44.000 1.38 0.00 36.57 3.24
426 1194 5.577164 CGACCAACTTAACTCCATAAGACTG 59.423 44.000 1.38 0.00 36.57 3.51
438 1206 6.072286 ACTCCATAAGACTGCTGTTTGAATTG 60.072 38.462 0.00 0.00 0.00 2.32
443 1211 6.942532 AAGACTGCTGTTTGAATTGTCTAA 57.057 33.333 0.00 0.00 33.63 2.10
446 1214 8.621532 AGACTGCTGTTTGAATTGTCTAATTA 57.378 30.769 0.00 0.00 36.66 1.40
453 1221 8.292444 TGTTTGAATTGTCTAATTATGGAGGG 57.708 34.615 0.00 0.00 36.66 4.30
454 1222 8.112822 TGTTTGAATTGTCTAATTATGGAGGGA 58.887 33.333 0.00 0.00 36.66 4.20
455 1223 8.406297 GTTTGAATTGTCTAATTATGGAGGGAC 58.594 37.037 0.00 0.00 36.66 4.46
456 1224 7.451731 TGAATTGTCTAATTATGGAGGGACT 57.548 36.000 0.00 0.00 37.88 3.85
458 1226 8.429641 TGAATTGTCTAATTATGGAGGGACTAC 58.570 37.037 0.00 0.00 36.02 2.73
459 1227 8.568617 AATTGTCTAATTATGGAGGGACTACT 57.431 34.615 0.00 0.00 35.90 2.57
460 1228 9.670442 AATTGTCTAATTATGGAGGGACTACTA 57.330 33.333 0.00 0.00 35.90 1.82
461 1229 8.474710 TTGTCTAATTATGGAGGGACTACTAC 57.525 38.462 0.00 0.00 42.22 2.73
462 1230 6.713903 TGTCTAATTATGGAGGGACTACTACG 59.286 42.308 0.00 0.00 42.22 3.51
465 1233 6.890979 AATTATGGAGGGACTACTACGTAC 57.109 41.667 0.00 0.00 42.22 3.67
467 1235 1.555075 TGGAGGGACTACTACGTACGT 59.445 52.381 25.98 25.98 42.22 3.57
472 1240 3.734293 AGGGACTACTACGTACGTACGAC 60.734 52.174 44.32 26.16 45.89 4.34
473 1241 6.169236 AGGGACTACTACGTACGTACGACA 62.169 50.000 44.32 31.32 45.89 4.35
481 1249 0.994263 GTACGTACGACACAATGGCC 59.006 55.000 24.41 0.00 0.00 5.36
489 1257 0.881118 GACACAATGGCCACACGAAT 59.119 50.000 8.16 0.00 0.00 3.34
587 1651 1.544724 TCAGGAAAAGAAATGCCCCG 58.455 50.000 0.00 0.00 0.00 5.73
588 1652 0.108662 CAGGAAAAGAAATGCCCCGC 60.109 55.000 0.00 0.00 0.00 6.13
589 1653 1.218047 GGAAAAGAAATGCCCCGCC 59.782 57.895 0.00 0.00 0.00 6.13
593 1657 1.124477 AAAGAAATGCCCCGCCCAAA 61.124 50.000 0.00 0.00 0.00 3.28
595 1659 1.124477 AGAAATGCCCCGCCCAAAAA 61.124 50.000 0.00 0.00 0.00 1.94
596 1660 0.953471 GAAATGCCCCGCCCAAAAAC 60.953 55.000 0.00 0.00 0.00 2.43
597 1661 1.700042 AAATGCCCCGCCCAAAAACA 61.700 50.000 0.00 0.00 0.00 2.83
598 1662 2.390306 AATGCCCCGCCCAAAAACAC 62.390 55.000 0.00 0.00 0.00 3.32
599 1663 3.541713 GCCCCGCCCAAAAACACA 61.542 61.111 0.00 0.00 0.00 3.72
600 1664 3.095347 GCCCCGCCCAAAAACACAA 62.095 57.895 0.00 0.00 0.00 3.33
601 1665 1.522569 CCCCGCCCAAAAACACAAA 59.477 52.632 0.00 0.00 0.00 2.83
602 1666 0.107654 CCCCGCCCAAAAACACAAAA 60.108 50.000 0.00 0.00 0.00 2.44
603 1667 1.679032 CCCCGCCCAAAAACACAAAAA 60.679 47.619 0.00 0.00 0.00 1.94
604 1668 2.293170 CCCGCCCAAAAACACAAAAAT 58.707 42.857 0.00 0.00 0.00 1.82
605 1669 3.467803 CCCGCCCAAAAACACAAAAATA 58.532 40.909 0.00 0.00 0.00 1.40
617 1681 2.929398 CACAAAAATAGAAATGCCCCGC 59.071 45.455 0.00 0.00 0.00 6.13
756 1830 0.530744 ATCAGCACTGGCAATTGCAG 59.469 50.000 30.32 24.96 44.61 4.41
772 1846 0.958091 GCAGTTTGGCACCACATGTA 59.042 50.000 0.00 0.00 0.00 2.29
810 1887 4.962122 GCACCACGCAACGCAGTG 62.962 66.667 5.83 5.83 45.00 3.66
816 1893 2.853210 CGCAACGCAGTGGTGTAG 59.147 61.111 0.00 0.00 45.00 2.74
819 1896 0.788391 GCAACGCAGTGGTGTAGTAC 59.212 55.000 0.00 0.00 45.00 2.73
948 2025 2.746362 CTGAGCTTGTCTTCCATTCCAC 59.254 50.000 0.00 0.00 0.00 4.02
970 2047 1.100510 CACCGATCCCGAGACTTGTA 58.899 55.000 0.00 0.00 38.22 2.41
974 2051 1.681793 CGATCCCGAGACTTGTACCAT 59.318 52.381 0.00 0.00 38.22 3.55
976 2053 1.481871 TCCCGAGACTTGTACCATCC 58.518 55.000 0.00 0.00 0.00 3.51
978 2055 1.191535 CCGAGACTTGTACCATCCCA 58.808 55.000 0.00 0.00 0.00 4.37
983 2060 0.328258 ACTTGTACCATCCCACCTGC 59.672 55.000 0.00 0.00 0.00 4.85
984 2061 0.620556 CTTGTACCATCCCACCTGCT 59.379 55.000 0.00 0.00 0.00 4.24
988 2065 2.210144 TACCATCCCACCTGCTTGCC 62.210 60.000 0.00 0.00 0.00 4.52
989 2066 2.357836 CATCCCACCTGCTTGCCT 59.642 61.111 0.00 0.00 0.00 4.75
990 2067 1.609239 CATCCCACCTGCTTGCCTA 59.391 57.895 0.00 0.00 0.00 3.93
1098 2175 0.257616 ACCTCTTCTCCTCCTCCTCG 59.742 60.000 0.00 0.00 0.00 4.63
1099 2176 0.467290 CCTCTTCTCCTCCTCCTCGG 60.467 65.000 0.00 0.00 0.00 4.63
1100 2177 1.076632 TCTTCTCCTCCTCCTCGGC 60.077 63.158 0.00 0.00 0.00 5.54
2000 3101 2.695666 TCGATTTGCCTTCTCTCCTAGG 59.304 50.000 0.82 0.82 34.54 3.02
2001 3102 2.695666 CGATTTGCCTTCTCTCCTAGGA 59.304 50.000 11.98 11.98 33.13 2.94
2002 3103 3.243704 CGATTTGCCTTCTCTCCTAGGAG 60.244 52.174 30.15 30.15 43.21 3.69
2016 3148 1.452953 TAGGAGTAGCCGACATGCCG 61.453 60.000 0.00 0.00 43.43 5.69
2069 3202 2.030805 GTGTTGTCTGGATGTTTCAGCC 60.031 50.000 0.00 0.00 40.77 4.85
2254 3418 0.541998 ACTGACATCACCCCTGTCGA 60.542 55.000 0.00 0.00 44.77 4.20
2257 3421 1.066215 TGACATCACCCCTGTCGAATG 60.066 52.381 0.00 0.00 44.77 2.67
2267 3431 1.202463 CCTGTCGAATGATTCTCGGCT 60.202 52.381 3.43 0.00 41.43 5.52
2326 3530 1.040646 GGGCCTGATCGATACAGACA 58.959 55.000 19.89 5.29 37.54 3.41
2399 8407 5.554822 TTCTAATATTGGCGGTGTTGTTC 57.445 39.130 0.00 0.00 0.00 3.18
2405 8413 2.285827 TGGCGGTGTTGTTCTTTTTG 57.714 45.000 0.00 0.00 0.00 2.44
2483 8491 2.433838 CAGGTGTGCGAGCTGGAG 60.434 66.667 0.00 0.00 45.05 3.86
2841 8972 2.819595 CCACGCCCTTCATGTCCG 60.820 66.667 0.00 0.00 0.00 4.79
3099 9233 1.716826 CGGCACCGACTACTCCTCTC 61.717 65.000 2.01 0.00 42.83 3.20
3100 9234 1.385756 GGCACCGACTACTCCTCTCC 61.386 65.000 0.00 0.00 0.00 3.71
3101 9235 0.680280 GCACCGACTACTCCTCTCCA 60.680 60.000 0.00 0.00 0.00 3.86
3144 9293 3.917760 CCATCGTCGAGGCCCCTC 61.918 72.222 0.00 4.19 39.55 4.30
3246 9395 2.631303 CTCGTCGACAAGAAGAGCG 58.369 57.895 17.16 0.00 45.60 5.03
3863 10015 1.887198 GACGAACAGGTCCTCAGAGAA 59.113 52.381 0.00 0.00 0.00 2.87
4003 10155 3.891977 TGCCTCGTCTTCTAAGCAGATAT 59.108 43.478 0.00 0.00 0.00 1.63
4005 10157 4.022762 GCCTCGTCTTCTAAGCAGATATCA 60.023 45.833 5.32 0.00 0.00 2.15
4054 10214 5.759963 AGCTGTACATAGCACGTAGTAATC 58.240 41.667 9.50 0.00 46.07 1.75
4160 10360 4.437587 GCCATGGGAGTGCAGCCT 62.438 66.667 15.13 0.00 0.00 4.58
4170 10370 0.820891 AGTGCAGCCTGTTGTCCTTG 60.821 55.000 0.00 0.00 0.00 3.61
4176 10376 1.064758 AGCCTGTTGTCCTTGTTGTGA 60.065 47.619 0.00 0.00 0.00 3.58
4177 10377 1.065551 GCCTGTTGTCCTTGTTGTGAC 59.934 52.381 0.00 0.00 0.00 3.67
4178 10378 1.330521 CCTGTTGTCCTTGTTGTGACG 59.669 52.381 0.00 0.00 34.18 4.35
4179 10379 2.276201 CTGTTGTCCTTGTTGTGACGA 58.724 47.619 0.00 0.00 34.18 4.20
4180 10380 2.872245 CTGTTGTCCTTGTTGTGACGAT 59.128 45.455 0.00 0.00 34.18 3.73
4181 10381 2.869801 TGTTGTCCTTGTTGTGACGATC 59.130 45.455 0.00 0.00 34.18 3.69
4182 10382 3.131396 GTTGTCCTTGTTGTGACGATCT 58.869 45.455 0.00 0.00 34.18 2.75
4183 10383 4.202172 TGTTGTCCTTGTTGTGACGATCTA 60.202 41.667 0.00 0.00 34.18 1.98
4184 10384 4.801330 TGTCCTTGTTGTGACGATCTAT 57.199 40.909 0.00 0.00 34.18 1.98
4185 10385 4.494484 TGTCCTTGTTGTGACGATCTATG 58.506 43.478 0.00 0.00 34.18 2.23
4186 10386 4.021456 TGTCCTTGTTGTGACGATCTATGT 60.021 41.667 0.00 0.00 34.18 2.29
4187 10387 5.184287 TGTCCTTGTTGTGACGATCTATGTA 59.816 40.000 0.00 0.00 34.18 2.29
4273 10490 1.535462 GAGTAGCTTGCGCCTGAAAAA 59.465 47.619 4.18 0.00 36.60 1.94
4277 10494 1.629345 GCTTGCGCCTGAAAAATGGC 61.629 55.000 4.18 0.00 45.25 4.40
4300 10517 2.249844 AACGAATCTTCAACCGGTGT 57.750 45.000 8.52 0.00 0.00 4.16
4307 10524 2.920524 TCTTCAACCGGTGTTTGCTTA 58.079 42.857 8.52 0.00 30.42 3.09
4342 10559 2.900273 GCATGGACTACGGCCAGA 59.100 61.111 2.24 0.00 39.11 3.86
4347 10564 1.681327 GGACTACGGCCAGAGACCA 60.681 63.158 14.87 0.00 0.00 4.02
4353 10570 2.659063 CGGCCAGAGACCATGGTGA 61.659 63.158 25.52 0.00 40.17 4.02
4365 10582 1.325355 CATGGTGATCAATGGCCTCC 58.675 55.000 3.32 0.00 0.00 4.30
4431 10650 0.390866 AGTGGCTCATGCTTCGTCTG 60.391 55.000 0.00 0.00 39.59 3.51
4434 10653 1.364626 GGCTCATGCTTCGTCTGGTG 61.365 60.000 0.00 0.00 39.59 4.17
4435 10654 1.364626 GCTCATGCTTCGTCTGGTGG 61.365 60.000 0.00 0.00 36.03 4.61
4440 10659 1.374758 GCTTCGTCTGGTGGTCCTG 60.375 63.158 0.00 0.00 34.23 3.86
4461 10680 0.108804 TTCGACGGTTCTGCTGATCC 60.109 55.000 9.98 9.98 0.00 3.36
4462 10681 0.965866 TCGACGGTTCTGCTGATCCT 60.966 55.000 16.09 5.96 31.52 3.24
4463 10682 0.803768 CGACGGTTCTGCTGATCCTG 60.804 60.000 16.09 12.43 31.52 3.86
4464 10683 0.247736 GACGGTTCTGCTGATCCTGT 59.752 55.000 16.09 14.79 31.52 4.00
4465 10684 0.247736 ACGGTTCTGCTGATCCTGTC 59.752 55.000 16.09 0.00 31.52 3.51
4466 10685 0.534412 CGGTTCTGCTGATCCTGTCT 59.466 55.000 16.09 0.00 31.52 3.41
4467 10686 1.470632 CGGTTCTGCTGATCCTGTCTC 60.471 57.143 16.09 0.00 31.52 3.36
4468 10687 1.470632 GGTTCTGCTGATCCTGTCTCG 60.471 57.143 12.21 0.00 0.00 4.04
4469 10688 0.820226 TTCTGCTGATCCTGTCTCGG 59.180 55.000 0.00 0.00 0.00 4.63
4470 10689 1.227205 CTGCTGATCCTGTCTCGGC 60.227 63.158 0.00 0.00 43.82 5.54
4471 10690 2.107953 GCTGATCCTGTCTCGGCC 59.892 66.667 0.00 0.00 38.77 6.13
4472 10691 2.430610 GCTGATCCTGTCTCGGCCT 61.431 63.158 0.00 0.00 38.77 5.19
4473 10692 1.965754 GCTGATCCTGTCTCGGCCTT 61.966 60.000 0.00 0.00 38.77 4.35
4474 10693 0.179089 CTGATCCTGTCTCGGCCTTG 60.179 60.000 0.00 0.00 0.00 3.61
4475 10694 0.904865 TGATCCTGTCTCGGCCTTGT 60.905 55.000 0.00 0.00 0.00 3.16
4476 10695 0.460987 GATCCTGTCTCGGCCTTGTG 60.461 60.000 0.00 0.00 0.00 3.33
4477 10696 1.194781 ATCCTGTCTCGGCCTTGTGT 61.195 55.000 0.00 0.00 0.00 3.72
4478 10697 1.374758 CCTGTCTCGGCCTTGTGTC 60.375 63.158 0.00 0.00 0.00 3.67
4479 10698 1.734477 CTGTCTCGGCCTTGTGTCG 60.734 63.158 0.00 0.00 0.00 4.35
4480 10699 3.112709 GTCTCGGCCTTGTGTCGC 61.113 66.667 0.00 0.00 0.00 5.19
4481 10700 4.717629 TCTCGGCCTTGTGTCGCG 62.718 66.667 0.00 0.00 0.00 5.87
4482 10701 4.717629 CTCGGCCTTGTGTCGCGA 62.718 66.667 3.71 3.71 0.00 5.87
4485 10704 4.980805 GGCCTTGTGTCGCGACCA 62.981 66.667 34.34 27.22 0.00 4.02
4486 10705 2.970324 GCCTTGTGTCGCGACCAA 60.970 61.111 34.34 31.04 0.00 3.67
4487 10706 2.935955 CCTTGTGTCGCGACCAAC 59.064 61.111 34.34 26.45 0.00 3.77
4488 10707 2.544359 CTTGTGTCGCGACCAACG 59.456 61.111 34.34 23.17 45.66 4.10
4489 10708 1.947146 CTTGTGTCGCGACCAACGA 60.947 57.895 34.34 24.40 45.77 3.85
4490 10709 1.282248 CTTGTGTCGCGACCAACGAT 61.282 55.000 34.34 0.00 45.77 3.73
4491 10710 1.553195 TTGTGTCGCGACCAACGATG 61.553 55.000 34.34 0.00 45.77 3.84
4500 10719 2.034066 CCAACGATGGTGGTGGCT 59.966 61.111 3.02 0.00 42.18 4.75
4501 10720 2.334946 CCAACGATGGTGGTGGCTG 61.335 63.158 3.02 0.00 42.18 4.85
4502 10721 1.600636 CAACGATGGTGGTGGCTGT 60.601 57.895 0.00 0.00 0.00 4.40
4503 10722 1.600636 AACGATGGTGGTGGCTGTG 60.601 57.895 0.00 0.00 0.00 3.66
4504 10723 2.050836 AACGATGGTGGTGGCTGTGA 62.051 55.000 0.00 0.00 0.00 3.58
4505 10724 2.034879 CGATGGTGGTGGCTGTGAC 61.035 63.158 0.00 0.00 0.00 3.67
4506 10725 1.675641 GATGGTGGTGGCTGTGACC 60.676 63.158 0.00 0.00 0.00 4.02
4507 10726 3.551496 ATGGTGGTGGCTGTGACCG 62.551 63.158 0.00 0.00 36.12 4.79
4508 10727 4.250305 GGTGGTGGCTGTGACCGT 62.250 66.667 0.00 0.00 36.12 4.83
4509 10728 2.203153 GTGGTGGCTGTGACCGTT 60.203 61.111 0.00 0.00 36.12 4.44
4510 10729 2.203139 TGGTGGCTGTGACCGTTG 60.203 61.111 0.00 0.00 36.12 4.10
4511 10730 2.203153 GGTGGCTGTGACCGTTGT 60.203 61.111 0.00 0.00 0.00 3.32
4512 10731 1.822186 GGTGGCTGTGACCGTTGTT 60.822 57.895 0.00 0.00 0.00 2.83
4513 10732 1.355210 GTGGCTGTGACCGTTGTTG 59.645 57.895 0.00 0.00 0.00 3.33
4514 10733 1.092921 GTGGCTGTGACCGTTGTTGA 61.093 55.000 0.00 0.00 0.00 3.18
4515 10734 1.092921 TGGCTGTGACCGTTGTTGAC 61.093 55.000 0.00 0.00 0.00 3.18
4516 10735 1.647084 GCTGTGACCGTTGTTGACC 59.353 57.895 0.00 0.00 0.00 4.02
4517 10736 0.814010 GCTGTGACCGTTGTTGACCT 60.814 55.000 0.00 0.00 0.00 3.85
4518 10737 1.663695 CTGTGACCGTTGTTGACCTT 58.336 50.000 0.00 0.00 0.00 3.50
4519 10738 1.597663 CTGTGACCGTTGTTGACCTTC 59.402 52.381 0.00 0.00 0.00 3.46
4520 10739 1.208535 TGTGACCGTTGTTGACCTTCT 59.791 47.619 0.00 0.00 0.00 2.85
4521 10740 2.285977 GTGACCGTTGTTGACCTTCTT 58.714 47.619 0.00 0.00 0.00 2.52
4522 10741 3.118702 TGTGACCGTTGTTGACCTTCTTA 60.119 43.478 0.00 0.00 0.00 2.10
4523 10742 3.493503 GTGACCGTTGTTGACCTTCTTAG 59.506 47.826 0.00 0.00 0.00 2.18
4524 10743 3.385433 TGACCGTTGTTGACCTTCTTAGA 59.615 43.478 0.00 0.00 0.00 2.10
4525 10744 3.988517 GACCGTTGTTGACCTTCTTAGAG 59.011 47.826 0.00 0.00 0.00 2.43
4526 10745 3.244112 ACCGTTGTTGACCTTCTTAGAGG 60.244 47.826 0.00 0.00 42.75 3.69
4527 10746 2.737252 CGTTGTTGACCTTCTTAGAGGC 59.263 50.000 0.00 0.00 40.65 4.70
4528 10747 3.740115 GTTGTTGACCTTCTTAGAGGCA 58.260 45.455 0.00 0.00 40.65 4.75
4529 10748 4.327680 GTTGTTGACCTTCTTAGAGGCAT 58.672 43.478 0.00 0.00 40.65 4.40
4530 10749 4.207891 TGTTGACCTTCTTAGAGGCATC 57.792 45.455 0.00 0.00 40.65 3.91
4531 10750 3.582647 TGTTGACCTTCTTAGAGGCATCA 59.417 43.478 0.00 0.00 40.65 3.07
4532 10751 3.895232 TGACCTTCTTAGAGGCATCAC 57.105 47.619 0.00 0.00 40.65 3.06
4533 10752 3.445008 TGACCTTCTTAGAGGCATCACT 58.555 45.455 0.00 0.00 40.65 3.41
4534 10753 3.196469 TGACCTTCTTAGAGGCATCACTG 59.804 47.826 0.00 0.00 40.65 3.66
4535 10754 3.445008 ACCTTCTTAGAGGCATCACTGA 58.555 45.455 0.00 0.00 40.65 3.41
4536 10755 4.036518 ACCTTCTTAGAGGCATCACTGAT 58.963 43.478 0.00 0.00 40.65 2.90
4537 10756 4.472833 ACCTTCTTAGAGGCATCACTGATT 59.527 41.667 0.00 0.00 40.65 2.57
4538 10757 5.045286 ACCTTCTTAGAGGCATCACTGATTT 60.045 40.000 0.00 0.00 40.65 2.17
4539 10758 5.296283 CCTTCTTAGAGGCATCACTGATTTG 59.704 44.000 0.00 0.00 0.00 2.32
4540 10759 5.426689 TCTTAGAGGCATCACTGATTTGT 57.573 39.130 0.00 0.00 0.00 2.83
4541 10760 5.809001 TCTTAGAGGCATCACTGATTTGTT 58.191 37.500 0.00 0.00 0.00 2.83
4542 10761 5.645067 TCTTAGAGGCATCACTGATTTGTTG 59.355 40.000 0.00 0.00 0.00 3.33
4543 10762 2.490903 AGAGGCATCACTGATTTGTTGC 59.509 45.455 0.00 0.00 40.19 4.17
4544 10763 2.229543 GAGGCATCACTGATTTGTTGCA 59.770 45.455 0.00 0.00 41.91 4.08
4545 10764 2.230508 AGGCATCACTGATTTGTTGCAG 59.769 45.455 8.09 0.00 41.91 4.41
4546 10765 1.990563 GCATCACTGATTTGTTGCAGC 59.009 47.619 0.00 0.00 40.49 5.25
4547 10766 2.608506 GCATCACTGATTTGTTGCAGCA 60.609 45.455 0.00 0.00 40.49 4.41
4548 10767 2.780065 TCACTGATTTGTTGCAGCAC 57.220 45.000 1.37 0.00 35.57 4.40
4549 10768 1.337703 TCACTGATTTGTTGCAGCACC 59.662 47.619 1.37 0.00 35.57 5.01
4550 10769 0.675633 ACTGATTTGTTGCAGCACCC 59.324 50.000 1.37 0.00 35.57 4.61
4551 10770 0.037975 CTGATTTGTTGCAGCACCCC 60.038 55.000 1.37 0.00 0.00 4.95
4552 10771 0.469705 TGATTTGTTGCAGCACCCCT 60.470 50.000 1.37 0.00 0.00 4.79
4553 10772 0.244721 GATTTGTTGCAGCACCCCTC 59.755 55.000 1.37 0.00 0.00 4.30
4554 10773 1.187567 ATTTGTTGCAGCACCCCTCC 61.188 55.000 1.37 0.00 0.00 4.30
4555 10774 2.296945 TTTGTTGCAGCACCCCTCCT 62.297 55.000 1.37 0.00 0.00 3.69
4556 10775 2.674380 GTTGCAGCACCCCTCCTG 60.674 66.667 0.00 0.00 0.00 3.86
4563 10782 3.402681 CACCCCTCCTGCACGGAT 61.403 66.667 5.50 0.00 42.12 4.18
4564 10783 3.083997 ACCCCTCCTGCACGGATC 61.084 66.667 5.50 0.00 42.12 3.36
4565 10784 3.866582 CCCCTCCTGCACGGATCC 61.867 72.222 0.00 0.00 42.12 3.36
4566 10785 4.227134 CCCTCCTGCACGGATCCG 62.227 72.222 32.20 32.20 42.12 4.18
4567 10786 4.227134 CCTCCTGCACGGATCCGG 62.227 72.222 35.87 25.13 42.12 5.14
4568 10787 4.899239 CTCCTGCACGGATCCGGC 62.899 72.222 35.87 32.26 42.12 6.13
4574 10793 4.082523 CACGGATCCGGCCACACT 62.083 66.667 35.87 12.31 44.69 3.55
4575 10794 3.771160 ACGGATCCGGCCACACTC 61.771 66.667 35.87 0.00 44.69 3.51
4576 10795 3.461773 CGGATCCGGCCACACTCT 61.462 66.667 26.95 0.00 35.56 3.24
4577 10796 2.501610 GGATCCGGCCACACTCTC 59.498 66.667 2.24 0.00 0.00 3.20
4578 10797 2.105128 GATCCGGCCACACTCTCG 59.895 66.667 2.24 0.00 0.00 4.04
4579 10798 2.680352 ATCCGGCCACACTCTCGT 60.680 61.111 2.24 0.00 0.00 4.18
4580 10799 2.890847 GATCCGGCCACACTCTCGTG 62.891 65.000 2.24 0.00 46.63 4.35
4582 10801 4.662961 CGGCCACACTCTCGTGCA 62.663 66.667 2.24 0.00 45.10 4.57
4583 10802 2.280797 GGCCACACTCTCGTGCAA 60.281 61.111 0.00 0.00 45.10 4.08
4584 10803 1.672356 GGCCACACTCTCGTGCAAT 60.672 57.895 0.00 0.00 45.10 3.56
4585 10804 1.499056 GCCACACTCTCGTGCAATG 59.501 57.895 0.00 0.00 45.10 2.82
4586 10805 0.950555 GCCACACTCTCGTGCAATGA 60.951 55.000 0.00 0.00 45.10 2.57
4587 10806 0.792640 CCACACTCTCGTGCAATGAC 59.207 55.000 0.00 0.00 45.10 3.06
4588 10807 1.501169 CACACTCTCGTGCAATGACA 58.499 50.000 0.00 0.00 45.10 3.58
4589 10808 1.866601 CACACTCTCGTGCAATGACAA 59.133 47.619 0.00 0.00 45.10 3.18
4590 10809 1.867233 ACACTCTCGTGCAATGACAAC 59.133 47.619 0.00 0.00 45.10 3.32
4591 10810 1.195448 CACTCTCGTGCAATGACAACC 59.805 52.381 0.00 0.00 33.82 3.77
4592 10811 0.439985 CTCTCGTGCAATGACAACCG 59.560 55.000 0.00 0.00 0.00 4.44
4593 10812 0.948623 TCTCGTGCAATGACAACCGG 60.949 55.000 0.00 0.00 0.00 5.28
4594 10813 1.911293 CTCGTGCAATGACAACCGGG 61.911 60.000 6.32 0.00 0.00 5.73
4595 10814 1.963855 CGTGCAATGACAACCGGGA 60.964 57.895 6.32 0.00 0.00 5.14
4596 10815 1.875963 GTGCAATGACAACCGGGAG 59.124 57.895 6.32 0.00 0.00 4.30
4597 10816 1.971167 TGCAATGACAACCGGGAGC 60.971 57.895 6.32 0.00 0.00 4.70
4598 10817 1.971167 GCAATGACAACCGGGAGCA 60.971 57.895 6.32 0.00 0.00 4.26
4599 10818 1.315257 GCAATGACAACCGGGAGCAT 61.315 55.000 6.32 0.44 0.00 3.79
4600 10819 0.452987 CAATGACAACCGGGAGCATG 59.547 55.000 6.32 0.00 0.00 4.06
4601 10820 1.315257 AATGACAACCGGGAGCATGC 61.315 55.000 10.51 10.51 0.00 4.06
4602 10821 2.045926 GACAACCGGGAGCATGCT 60.046 61.111 22.92 22.92 0.00 3.79
4603 10822 2.045926 ACAACCGGGAGCATGCTC 60.046 61.111 34.99 34.99 42.04 4.26
4614 10833 4.457496 CATGCTCCGCGTGGTCCT 62.457 66.667 16.01 0.00 41.34 3.85
4615 10834 4.457496 ATGCTCCGCGTGGTCCTG 62.457 66.667 16.01 5.39 36.30 3.86
4623 10842 4.363990 CGTGGTCCTGCTGCTCGT 62.364 66.667 0.00 0.00 0.00 4.18
4624 10843 2.433318 GTGGTCCTGCTGCTCGTC 60.433 66.667 0.00 0.00 0.00 4.20
4625 10844 4.056125 TGGTCCTGCTGCTCGTCG 62.056 66.667 0.00 0.00 0.00 5.12
4626 10845 4.057428 GGTCCTGCTGCTCGTCGT 62.057 66.667 0.00 0.00 0.00 4.34
4627 10846 2.049063 GTCCTGCTGCTCGTCGTT 60.049 61.111 0.00 0.00 0.00 3.85
4628 10847 2.089349 GTCCTGCTGCTCGTCGTTC 61.089 63.158 0.00 0.00 0.00 3.95
4629 10848 2.811317 CCTGCTGCTCGTCGTTCC 60.811 66.667 0.00 0.00 0.00 3.62
4630 10849 2.259818 CTGCTGCTCGTCGTTCCT 59.740 61.111 0.00 0.00 0.00 3.36
4631 10850 1.803519 CTGCTGCTCGTCGTTCCTC 60.804 63.158 0.00 0.00 0.00 3.71
4632 10851 2.876645 GCTGCTCGTCGTTCCTCG 60.877 66.667 0.00 0.00 41.41 4.63
4633 10852 2.876645 CTGCTCGTCGTTCCTCGC 60.877 66.667 0.00 0.00 39.67 5.03
4634 10853 4.415332 TGCTCGTCGTTCCTCGCC 62.415 66.667 0.00 0.00 39.67 5.54
4650 10869 4.200283 CCGCCTCTGCTCGTCCTC 62.200 72.222 0.00 0.00 34.43 3.71
4651 10870 4.544689 CGCCTCTGCTCGTCCTCG 62.545 72.222 0.00 0.00 38.55 4.63
4652 10871 3.444805 GCCTCTGCTCGTCCTCGT 61.445 66.667 0.00 0.00 38.33 4.18
4653 10872 2.795297 CCTCTGCTCGTCCTCGTC 59.205 66.667 0.00 0.00 38.33 4.20
4654 10873 2.766400 CCTCTGCTCGTCCTCGTCC 61.766 68.421 0.00 0.00 38.33 4.79
4655 10874 1.747367 CTCTGCTCGTCCTCGTCCT 60.747 63.158 0.00 0.00 38.33 3.85
4656 10875 1.711060 CTCTGCTCGTCCTCGTCCTC 61.711 65.000 0.00 0.00 38.33 3.71
4657 10876 3.102107 CTGCTCGTCCTCGTCCTCG 62.102 68.421 0.00 0.00 38.33 4.63
4658 10877 4.539881 GCTCGTCCTCGTCCTCGC 62.540 72.222 0.00 0.00 38.33 5.03
4659 10878 3.878519 CTCGTCCTCGTCCTCGCC 61.879 72.222 0.00 0.00 38.33 5.54
4662 10881 3.437795 GTCCTCGTCCTCGCCGAA 61.438 66.667 0.00 0.00 36.96 4.30
4663 10882 3.132139 TCCTCGTCCTCGCCGAAG 61.132 66.667 0.00 0.00 36.96 3.79
4664 10883 3.132139 CCTCGTCCTCGCCGAAGA 61.132 66.667 0.00 0.00 36.96 2.87
4665 10884 2.100603 CTCGTCCTCGCCGAAGAC 59.899 66.667 5.78 5.78 36.96 3.01
4668 10887 2.564975 GTCCTCGCCGAAGACGAA 59.435 61.111 0.00 0.00 42.66 3.85
4669 10888 1.080974 GTCCTCGCCGAAGACGAAA 60.081 57.895 0.00 0.00 42.66 3.46
4670 10889 1.071567 GTCCTCGCCGAAGACGAAAG 61.072 60.000 0.00 0.00 42.66 2.62
4681 10900 2.583868 ACGAAAGTCACACGCGCA 60.584 55.556 5.73 0.00 44.19 6.09
4682 10901 2.128128 CGAAAGTCACACGCGCAC 60.128 61.111 5.73 0.00 0.00 5.34
4683 10902 2.585869 CGAAAGTCACACGCGCACT 61.586 57.895 5.73 0.00 0.00 4.40
4684 10903 1.201825 GAAAGTCACACGCGCACTC 59.798 57.895 5.73 0.00 0.00 3.51
4685 10904 2.466518 GAAAGTCACACGCGCACTCG 62.467 60.000 5.73 0.00 39.07 4.18
4701 10920 1.075542 CTCGCACGCTGGAAACAATA 58.924 50.000 0.00 0.00 42.06 1.90
4702 10921 0.793861 TCGCACGCTGGAAACAATAC 59.206 50.000 0.00 0.00 42.06 1.89
4705 10924 0.796312 CACGCTGGAAACAATACGCT 59.204 50.000 0.00 0.00 42.06 5.07
4712 10931 4.210120 GCTGGAAACAATACGCTCTATCAG 59.790 45.833 0.00 0.00 42.06 2.90
4717 10936 4.983671 ACAATACGCTCTATCAGTGTGA 57.016 40.909 0.00 0.00 45.91 3.58
4744 10963 5.183713 TGAATACTCAAGCCACCAGAAATTG 59.816 40.000 0.00 0.00 0.00 2.32
4773 10992 5.008217 ACCAATCTTTTTGAAATCGACGACA 59.992 36.000 0.00 0.00 0.00 4.35
4787 14042 4.285292 TCGACGACAGTGTTTAGACTTTC 58.715 43.478 0.00 0.00 0.00 2.62
4789 14044 4.365723 GACGACAGTGTTTAGACTTTCCA 58.634 43.478 0.00 0.00 0.00 3.53
4823 14078 3.028850 TCTTCCAACTCCGGTCGATATT 58.971 45.455 0.00 0.00 0.00 1.28
4852 14107 7.417911 CCCTTAGATATATAGAAATGCCGAGCA 60.418 40.741 1.01 1.01 44.86 4.26
4853 14108 7.436673 CCTTAGATATATAGAAATGCCGAGCAC 59.563 40.741 0.50 0.00 43.04 4.40
4854 14109 6.537453 AGATATATAGAAATGCCGAGCACT 57.463 37.500 0.50 0.00 43.04 4.40
4855 14110 6.940739 AGATATATAGAAATGCCGAGCACTT 58.059 36.000 0.50 0.00 43.04 3.16
4856 14111 6.815641 AGATATATAGAAATGCCGAGCACTTG 59.184 38.462 0.50 0.00 43.04 3.16
4857 14112 2.472695 TAGAAATGCCGAGCACTTGT 57.527 45.000 0.50 0.00 43.04 3.16
4858 14113 1.160137 AGAAATGCCGAGCACTTGTC 58.840 50.000 0.50 0.00 43.04 3.18
4859 14114 0.169009 GAAATGCCGAGCACTTGTCC 59.831 55.000 0.50 0.00 43.04 4.02
4861 14116 2.449031 AATGCCGAGCACTTGTCCGA 62.449 55.000 0.50 0.00 43.04 4.55
4886 14149 3.489229 GGAGCTCCCAAATTTGATAACGC 60.489 47.826 23.19 13.14 34.14 4.84
4890 14153 5.594317 AGCTCCCAAATTTGATAACGCTTAT 59.406 36.000 19.86 0.00 0.00 1.73
4903 14166 3.579534 ACGCTTATCAGGGTCTCTCTA 57.420 47.619 0.00 0.00 42.43 2.43
4909 14172 6.349777 CGCTTATCAGGGTCTCTCTAATAAGG 60.350 46.154 2.84 0.00 0.00 2.69
4910 14173 6.495526 GCTTATCAGGGTCTCTCTAATAAGGT 59.504 42.308 2.84 0.00 0.00 3.50
4911 14174 7.309560 GCTTATCAGGGTCTCTCTAATAAGGTC 60.310 44.444 2.84 0.00 0.00 3.85
4912 14175 5.735733 TCAGGGTCTCTCTAATAAGGTCT 57.264 43.478 0.00 0.00 0.00 3.85
4913 14176 6.093617 TCAGGGTCTCTCTAATAAGGTCTT 57.906 41.667 0.00 0.00 0.00 3.01
4930 14193 6.182507 AGGTCTTGTGTGGTTATAACTTCA 57.817 37.500 15.05 11.25 0.00 3.02
4943 14206 6.127897 GGTTATAACTTCAGCTTGTTCTGCAT 60.128 38.462 15.05 0.00 34.19 3.96
4953 14216 4.708421 AGCTTGTTCTGCATCATTTACCAT 59.292 37.500 0.00 0.00 0.00 3.55
4954 14217 4.802039 GCTTGTTCTGCATCATTTACCATG 59.198 41.667 0.00 0.00 0.00 3.66
4985 14248 4.537135 TCCTGATCAGAAGCGTTAACTT 57.463 40.909 24.62 0.00 0.00 2.66
4986 14249 4.894784 TCCTGATCAGAAGCGTTAACTTT 58.105 39.130 24.62 0.00 0.00 2.66
4987 14250 4.690748 TCCTGATCAGAAGCGTTAACTTTG 59.309 41.667 24.62 2.01 0.00 2.77
4988 14251 4.142816 CCTGATCAGAAGCGTTAACTTTGG 60.143 45.833 24.62 0.00 0.00 3.28
4989 14252 4.637276 TGATCAGAAGCGTTAACTTTGGA 58.363 39.130 3.71 0.00 0.00 3.53
4990 14253 5.060506 TGATCAGAAGCGTTAACTTTGGAA 58.939 37.500 3.71 0.00 0.00 3.53
4991 14254 5.179368 TGATCAGAAGCGTTAACTTTGGAAG 59.821 40.000 3.71 0.00 0.00 3.46
4992 14255 4.448210 TCAGAAGCGTTAACTTTGGAAGT 58.552 39.130 3.71 0.00 45.46 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 5.613358 ATGTCTGATGAACTTTCCGTTTC 57.387 39.130 0.00 0.00 35.56 2.78
17 18 3.132824 ACCATTAGCACGATGTCTGATGA 59.867 43.478 0.00 0.00 30.59 2.92
20 21 2.418609 CCACCATTAGCACGATGTCTGA 60.419 50.000 0.00 0.00 0.00 3.27
21 22 1.935873 CCACCATTAGCACGATGTCTG 59.064 52.381 0.00 0.00 0.00 3.51
23 24 1.933853 GACCACCATTAGCACGATGTC 59.066 52.381 0.00 0.00 0.00 3.06
25 26 0.930310 CGACCACCATTAGCACGATG 59.070 55.000 0.00 0.00 0.00 3.84
26 27 0.179084 CCGACCACCATTAGCACGAT 60.179 55.000 0.00 0.00 0.00 3.73
27 28 1.216977 CCGACCACCATTAGCACGA 59.783 57.895 0.00 0.00 0.00 4.35
28 29 2.461110 GCCGACCACCATTAGCACG 61.461 63.158 0.00 0.00 0.00 5.34
29 30 1.078426 AGCCGACCACCATTAGCAC 60.078 57.895 0.00 0.00 0.00 4.40
30 31 1.078497 CAGCCGACCACCATTAGCA 60.078 57.895 0.00 0.00 0.00 3.49
66 67 4.101790 CCATGGTGGACGCAACGC 62.102 66.667 2.57 0.00 40.96 4.84
84 85 1.009829 CTAATCTGCAGCACCCGTTC 58.990 55.000 9.47 0.00 0.00 3.95
86 87 1.450312 GCTAATCTGCAGCACCCGT 60.450 57.895 9.47 0.00 38.93 5.28
88 89 2.182842 CGGCTAATCTGCAGCACCC 61.183 63.158 9.47 3.85 40.95 4.61
89 90 0.533755 ATCGGCTAATCTGCAGCACC 60.534 55.000 9.47 4.59 40.95 5.01
125 126 9.547753 GCTTCTTCCAATGATCATACTAGTTTA 57.452 33.333 9.04 0.00 0.00 2.01
126 127 7.225538 CGCTTCTTCCAATGATCATACTAGTTT 59.774 37.037 9.04 0.00 0.00 2.66
127 128 6.703607 CGCTTCTTCCAATGATCATACTAGTT 59.296 38.462 9.04 0.00 0.00 2.24
131 132 5.282055 TCGCTTCTTCCAATGATCATACT 57.718 39.130 9.04 0.00 0.00 2.12
151 152 3.403038 TCCTCTGCTTCCTTTCTTTTCG 58.597 45.455 0.00 0.00 0.00 3.46
156 157 2.027285 GCTTCTCCTCTGCTTCCTTTCT 60.027 50.000 0.00 0.00 0.00 2.52
157 158 2.355197 GCTTCTCCTCTGCTTCCTTTC 58.645 52.381 0.00 0.00 0.00 2.62
158 159 1.004161 GGCTTCTCCTCTGCTTCCTTT 59.996 52.381 0.00 0.00 0.00 3.11
159 160 0.617935 GGCTTCTCCTCTGCTTCCTT 59.382 55.000 0.00 0.00 0.00 3.36
207 332 0.106918 TCCACGGGTGCAAGAAAAGT 60.107 50.000 0.00 0.00 0.00 2.66
210 335 1.228124 CCTCCACGGGTGCAAGAAA 60.228 57.895 0.00 0.00 0.00 2.52
223 348 1.459450 GCGTGGAAAATTAGCCTCCA 58.541 50.000 0.00 0.00 36.89 3.86
232 372 5.067954 ACTACTACTTTTGGCGTGGAAAAT 58.932 37.500 0.00 0.00 0.00 1.82
262 402 4.944962 TGAACACATGCAGCAACTATAC 57.055 40.909 0.00 0.00 0.00 1.47
265 405 4.277921 TGATTTGAACACATGCAGCAACTA 59.722 37.500 0.00 0.00 0.00 2.24
266 406 3.068448 TGATTTGAACACATGCAGCAACT 59.932 39.130 0.00 0.00 0.00 3.16
268 408 3.181478 TGTGATTTGAACACATGCAGCAA 60.181 39.130 0.00 0.00 42.20 3.91
269 409 2.361438 TGTGATTTGAACACATGCAGCA 59.639 40.909 0.00 0.00 42.20 4.41
270 410 3.015934 TGTGATTTGAACACATGCAGC 57.984 42.857 0.00 0.00 42.20 5.25
271 411 2.975193 CGTGTGATTTGAACACATGCAG 59.025 45.455 0.00 0.00 46.68 4.41
276 416 1.601903 GGCTCGTGTGATTTGAACACA 59.398 47.619 7.40 0.00 46.68 3.72
277 417 1.069227 GGGCTCGTGTGATTTGAACAC 60.069 52.381 0.00 0.00 43.62 3.32
278 418 1.234821 GGGCTCGTGTGATTTGAACA 58.765 50.000 0.00 0.00 0.00 3.18
279 419 0.165944 CGGGCTCGTGTGATTTGAAC 59.834 55.000 0.00 0.00 0.00 3.18
280 420 2.539003 CGGGCTCGTGTGATTTGAA 58.461 52.632 0.00 0.00 0.00 2.69
291 431 1.519455 GTCCTGAATGACGGGCTCG 60.519 63.158 3.27 3.27 44.31 5.03
292 432 0.036388 TTGTCCTGAATGACGGGCTC 60.036 55.000 0.00 0.00 44.31 4.70
293 433 0.321653 GTTGTCCTGAATGACGGGCT 60.322 55.000 0.00 0.00 44.31 5.19
294 434 0.605319 TGTTGTCCTGAATGACGGGC 60.605 55.000 0.00 0.00 44.31 6.13
295 435 1.156736 GTGTTGTCCTGAATGACGGG 58.843 55.000 0.00 0.00 45.93 5.28
296 436 1.531149 GTGTGTTGTCCTGAATGACGG 59.469 52.381 0.00 0.00 38.11 4.79
297 437 2.032894 GTGTGTGTTGTCCTGAATGACG 60.033 50.000 0.00 0.00 38.11 4.35
298 438 3.206150 AGTGTGTGTTGTCCTGAATGAC 58.794 45.455 0.00 0.00 35.77 3.06
299 439 3.134623 AGAGTGTGTGTTGTCCTGAATGA 59.865 43.478 0.00 0.00 0.00 2.57
300 440 3.470709 AGAGTGTGTGTTGTCCTGAATG 58.529 45.455 0.00 0.00 0.00 2.67
303 443 2.158957 GGAAGAGTGTGTGTTGTCCTGA 60.159 50.000 0.00 0.00 0.00 3.86
304 444 2.213499 GGAAGAGTGTGTGTTGTCCTG 58.787 52.381 0.00 0.00 0.00 3.86
306 446 1.940613 GTGGAAGAGTGTGTGTTGTCC 59.059 52.381 0.00 0.00 0.00 4.02
307 447 1.593006 CGTGGAAGAGTGTGTGTTGTC 59.407 52.381 0.00 0.00 0.00 3.18
308 448 1.651987 CGTGGAAGAGTGTGTGTTGT 58.348 50.000 0.00 0.00 0.00 3.32
309 449 0.937304 CCGTGGAAGAGTGTGTGTTG 59.063 55.000 0.00 0.00 0.00 3.33
311 451 1.227556 GCCGTGGAAGAGTGTGTGT 60.228 57.895 0.00 0.00 0.00 3.72
312 452 0.603707 ATGCCGTGGAAGAGTGTGTG 60.604 55.000 0.00 0.00 0.00 3.82
313 453 0.108585 AATGCCGTGGAAGAGTGTGT 59.891 50.000 0.00 0.00 0.00 3.72
314 454 0.798776 GAATGCCGTGGAAGAGTGTG 59.201 55.000 0.00 0.00 0.00 3.82
315 455 0.396435 TGAATGCCGTGGAAGAGTGT 59.604 50.000 0.00 0.00 0.00 3.55
316 456 0.798776 GTGAATGCCGTGGAAGAGTG 59.201 55.000 0.00 0.00 0.00 3.51
317 457 0.321653 GGTGAATGCCGTGGAAGAGT 60.322 55.000 0.00 0.00 0.00 3.24
318 458 1.361668 CGGTGAATGCCGTGGAAGAG 61.362 60.000 0.00 0.00 46.11 2.85
320 460 3.177600 CGGTGAATGCCGTGGAAG 58.822 61.111 0.00 0.00 46.11 3.46
329 469 2.627945 TGTAAAGCTAGGCGGTGAATG 58.372 47.619 0.00 0.00 0.00 2.67
330 470 3.560636 ATGTAAAGCTAGGCGGTGAAT 57.439 42.857 0.00 0.00 0.00 2.57
331 471 4.502604 GGATATGTAAAGCTAGGCGGTGAA 60.503 45.833 0.00 0.00 0.00 3.18
332 472 3.006537 GGATATGTAAAGCTAGGCGGTGA 59.993 47.826 0.00 0.00 0.00 4.02
333 473 3.244078 TGGATATGTAAAGCTAGGCGGTG 60.244 47.826 0.00 0.00 0.00 4.94
335 475 3.678056 TGGATATGTAAAGCTAGGCGG 57.322 47.619 0.00 0.00 0.00 6.13
336 476 4.820897 TGATGGATATGTAAAGCTAGGCG 58.179 43.478 0.00 0.00 0.00 5.52
337 477 7.175641 ACAATTGATGGATATGTAAAGCTAGGC 59.824 37.037 13.59 0.00 0.00 3.93
338 478 8.509690 CACAATTGATGGATATGTAAAGCTAGG 58.490 37.037 13.59 0.00 0.00 3.02
339 479 8.019669 GCACAATTGATGGATATGTAAAGCTAG 58.980 37.037 13.59 0.00 0.00 3.42
340 480 7.501892 TGCACAATTGATGGATATGTAAAGCTA 59.498 33.333 13.59 0.00 0.00 3.32
341 481 6.321945 TGCACAATTGATGGATATGTAAAGCT 59.678 34.615 13.59 0.00 0.00 3.74
342 482 6.506147 TGCACAATTGATGGATATGTAAAGC 58.494 36.000 13.59 0.00 0.00 3.51
343 483 8.139350 ACATGCACAATTGATGGATATGTAAAG 58.861 33.333 13.59 3.16 31.96 1.85
344 484 7.921745 CACATGCACAATTGATGGATATGTAAA 59.078 33.333 13.59 0.00 32.27 2.01
345 485 7.427214 CACATGCACAATTGATGGATATGTAA 58.573 34.615 13.59 0.00 32.27 2.41
348 488 4.684242 GCACATGCACAATTGATGGATATG 59.316 41.667 13.59 13.09 41.59 1.78
350 490 3.243134 CGCACATGCACAATTGATGGATA 60.243 43.478 13.59 0.00 42.21 2.59
351 491 2.480587 CGCACATGCACAATTGATGGAT 60.481 45.455 13.59 10.40 42.21 3.41
352 492 1.135344 CGCACATGCACAATTGATGGA 60.135 47.619 13.59 8.46 42.21 3.41
353 493 1.273688 CGCACATGCACAATTGATGG 58.726 50.000 13.59 2.32 42.21 3.51
354 494 0.643310 GCGCACATGCACAATTGATG 59.357 50.000 13.59 8.22 42.21 3.07
355 495 0.458889 GGCGCACATGCACAATTGAT 60.459 50.000 13.59 0.00 42.21 2.57
357 497 0.738063 ATGGCGCACATGCACAATTG 60.738 50.000 10.83 3.24 42.21 2.32
358 498 1.592743 ATGGCGCACATGCACAATT 59.407 47.368 10.83 0.00 42.21 2.32
359 499 3.290567 ATGGCGCACATGCACAAT 58.709 50.000 10.83 0.00 42.21 2.71
366 506 2.627515 AGTCTAATCATGGCGCACAT 57.372 45.000 10.83 7.73 41.57 3.21
367 507 2.279741 GAAGTCTAATCATGGCGCACA 58.720 47.619 10.83 5.20 0.00 4.57
368 508 1.599542 GGAAGTCTAATCATGGCGCAC 59.400 52.381 10.83 0.00 0.00 5.34
369 509 1.486310 AGGAAGTCTAATCATGGCGCA 59.514 47.619 10.83 0.00 0.00 6.09
370 510 2.246719 AGGAAGTCTAATCATGGCGC 57.753 50.000 0.00 0.00 0.00 6.53
371 511 3.535561 ACAAGGAAGTCTAATCATGGCG 58.464 45.455 0.00 0.00 0.00 5.69
372 512 4.816925 GGTACAAGGAAGTCTAATCATGGC 59.183 45.833 0.00 0.00 0.00 4.40
374 514 5.661458 ACGGTACAAGGAAGTCTAATCATG 58.339 41.667 0.00 0.00 0.00 3.07
388 1156 0.881159 TGGTCGGCAAACGGTACAAG 60.881 55.000 0.00 0.00 44.45 3.16
401 1169 4.868734 GTCTTATGGAGTTAAGTTGGTCGG 59.131 45.833 0.00 0.00 32.21 4.79
406 1174 5.934625 ACAGCAGTCTTATGGAGTTAAGTTG 59.065 40.000 0.00 0.00 32.21 3.16
417 1185 6.906659 AGACAATTCAAACAGCAGTCTTATG 58.093 36.000 0.00 0.00 31.38 1.90
418 1186 8.621532 TTAGACAATTCAAACAGCAGTCTTAT 57.378 30.769 0.00 0.00 36.40 1.73
419 1187 8.621532 ATTAGACAATTCAAACAGCAGTCTTA 57.378 30.769 0.00 0.00 36.40 2.10
420 1188 6.942532 TTAGACAATTCAAACAGCAGTCTT 57.057 33.333 0.00 0.00 36.40 3.01
422 1190 9.282247 CATAATTAGACAATTCAAACAGCAGTC 57.718 33.333 0.00 0.00 35.88 3.51
424 1192 8.461222 TCCATAATTAGACAATTCAAACAGCAG 58.539 33.333 0.00 0.00 35.88 4.24
425 1193 8.347004 TCCATAATTAGACAATTCAAACAGCA 57.653 30.769 0.00 0.00 35.88 4.41
426 1194 7.917505 CCTCCATAATTAGACAATTCAAACAGC 59.082 37.037 0.00 0.00 35.88 4.40
438 1206 6.714356 ACGTAGTAGTCCCTCCATAATTAGAC 59.286 42.308 0.00 0.00 41.94 2.59
462 1230 0.994263 GGCCATTGTGTCGTACGTAC 59.006 55.000 15.90 15.90 0.00 3.67
465 1233 0.946700 TGTGGCCATTGTGTCGTACG 60.947 55.000 9.72 9.53 0.00 3.67
467 1235 0.946700 CGTGTGGCCATTGTGTCGTA 60.947 55.000 9.72 0.00 0.00 3.43
470 1238 0.881118 ATTCGTGTGGCCATTGTGTC 59.119 50.000 9.72 0.00 0.00 3.67
472 1240 0.109179 CCATTCGTGTGGCCATTGTG 60.109 55.000 9.72 2.55 31.43 3.33
473 1241 0.539438 ACCATTCGTGTGGCCATTGT 60.539 50.000 9.72 0.00 43.27 2.71
474 1242 0.171007 GACCATTCGTGTGGCCATTG 59.829 55.000 9.72 1.32 43.27 2.82
475 1243 1.305219 CGACCATTCGTGTGGCCATT 61.305 55.000 9.72 0.00 43.27 3.16
548 1330 1.219646 TCCGTACTCCAAACAAACGC 58.780 50.000 0.00 0.00 32.43 4.84
553 1335 2.531771 TCCTGATCCGTACTCCAAACA 58.468 47.619 0.00 0.00 0.00 2.83
587 1651 6.636447 GCATTTCTATTTTTGTGTTTTTGGGC 59.364 34.615 0.00 0.00 0.00 5.36
588 1652 7.138081 GGCATTTCTATTTTTGTGTTTTTGGG 58.862 34.615 0.00 0.00 0.00 4.12
589 1653 7.138081 GGGCATTTCTATTTTTGTGTTTTTGG 58.862 34.615 0.00 0.00 0.00 3.28
593 1657 4.994217 CGGGGCATTTCTATTTTTGTGTTT 59.006 37.500 0.00 0.00 0.00 2.83
595 1659 3.616317 GCGGGGCATTTCTATTTTTGTGT 60.616 43.478 0.00 0.00 0.00 3.72
596 1660 2.929398 GCGGGGCATTTCTATTTTTGTG 59.071 45.455 0.00 0.00 0.00 3.33
597 1661 2.093711 GGCGGGGCATTTCTATTTTTGT 60.094 45.455 0.00 0.00 0.00 2.83
598 1662 2.549926 GGCGGGGCATTTCTATTTTTG 58.450 47.619 0.00 0.00 0.00 2.44
599 1663 1.484653 GGGCGGGGCATTTCTATTTTT 59.515 47.619 0.00 0.00 0.00 1.94
600 1664 1.119684 GGGCGGGGCATTTCTATTTT 58.880 50.000 0.00 0.00 0.00 1.82
601 1665 0.032615 TGGGCGGGGCATTTCTATTT 60.033 50.000 0.00 0.00 0.00 1.40
602 1666 0.032615 TTGGGCGGGGCATTTCTATT 60.033 50.000 0.00 0.00 0.00 1.73
603 1667 0.468029 CTTGGGCGGGGCATTTCTAT 60.468 55.000 0.00 0.00 0.00 1.98
604 1668 1.077068 CTTGGGCGGGGCATTTCTA 60.077 57.895 0.00 0.00 0.00 2.10
605 1669 2.228841 ATCTTGGGCGGGGCATTTCT 62.229 55.000 0.00 0.00 0.00 2.52
617 1681 2.782341 AGGATTTCCTCTGGATCTTGGG 59.218 50.000 0.00 0.00 44.77 4.12
709 1773 1.603678 CGCGTACTGGGTGTAACTGTT 60.604 52.381 0.00 0.00 36.74 3.16
711 1775 0.038892 ACGCGTACTGGGTGTAACTG 60.039 55.000 11.67 0.00 42.99 3.16
780 1854 0.106521 GTGGTGCCAAATTGCAAGGT 59.893 50.000 4.94 0.00 44.11 3.50
810 1887 6.144724 CCGTTCGAGTATAGTAGTACTACACC 59.855 46.154 29.87 16.25 38.48 4.16
815 1892 5.460419 CGTTCCGTTCGAGTATAGTAGTACT 59.540 44.000 8.14 8.14 37.61 2.73
816 1893 5.661357 CGTTCCGTTCGAGTATAGTAGTAC 58.339 45.833 0.00 0.00 0.00 2.73
819 1896 3.539756 GCGTTCCGTTCGAGTATAGTAG 58.460 50.000 0.00 0.00 0.00 2.57
912 1989 2.203126 CAGAAGCTCGGGATGGCC 60.203 66.667 0.00 0.00 0.00 5.36
948 2025 1.605058 AAGTCTCGGGATCGGTGTGG 61.605 60.000 0.00 0.00 36.95 4.17
970 2047 2.036256 GCAAGCAGGTGGGATGGT 59.964 61.111 0.00 0.00 0.00 3.55
974 2051 1.422977 TTGTAGGCAAGCAGGTGGGA 61.423 55.000 0.00 0.00 0.00 4.37
976 2053 2.559785 CTTGTAGGCAAGCAGGTGG 58.440 57.895 0.00 0.00 44.54 4.61
984 2061 1.885887 GCCATTGTCACTTGTAGGCAA 59.114 47.619 0.00 0.00 40.29 4.52
988 2065 0.447801 GCCGCCATTGTCACTTGTAG 59.552 55.000 0.00 0.00 0.00 2.74
989 2066 0.958382 GGCCGCCATTGTCACTTGTA 60.958 55.000 3.91 0.00 0.00 2.41
990 2067 2.268076 GGCCGCCATTGTCACTTGT 61.268 57.895 3.91 0.00 0.00 3.16
994 2071 3.134127 GGAGGCCGCCATTGTCAC 61.134 66.667 22.24 0.00 0.00 3.67
1140 2217 3.425713 CCGTCCTCGTCGTCCGAA 61.426 66.667 0.00 0.00 46.75 4.30
1554 2637 2.677228 CCCCAGTTGAAGCCCGAT 59.323 61.111 0.00 0.00 0.00 4.18
2000 3101 2.279517 CCGGCATGTCGGCTACTC 60.280 66.667 28.00 0.00 43.71 2.59
2033 3166 2.357517 CACAGACACCGTCAGGCC 60.358 66.667 0.00 0.00 42.76 5.19
2069 3202 1.079127 CTCCGGCTTGTACCACCAG 60.079 63.158 0.00 0.00 0.00 4.00
2254 3418 2.762887 TCAGACAGAGCCGAGAATCATT 59.237 45.455 0.00 0.00 33.17 2.57
2257 3421 3.316588 TGTATCAGACAGAGCCGAGAATC 59.683 47.826 0.00 0.00 32.86 2.52
2267 3431 3.181510 CGACACGACATGTATCAGACAGA 60.182 47.826 0.00 0.00 43.56 3.41
2314 3518 2.427453 ACGAGGCTTTGTCTGTATCGAT 59.573 45.455 2.16 2.16 33.23 3.59
2326 3530 1.610886 GGCTGGAAGTTACGAGGCTTT 60.611 52.381 0.00 0.00 37.94 3.51
2399 8407 1.007387 GCCACCGCCTGTCAAAAAG 60.007 57.895 0.00 0.00 0.00 2.27
2495 8503 1.740296 CTTGCCGTACTTGGTCGGG 60.740 63.158 5.78 0.00 45.85 5.14
2717 8848 3.605749 CTGCGTGGGGTGGTCGAAT 62.606 63.158 0.00 0.00 0.00 3.34
3152 9301 2.116125 AGCACCAAGGGCTCAACC 59.884 61.111 0.00 0.00 36.81 3.77
3246 9395 4.349871 GCGCACGTTGTCGGACAC 62.350 66.667 10.97 5.57 41.85 3.67
3811 9963 1.588139 CCGTATTCCCACGCGTCTC 60.588 63.158 9.86 0.00 40.59 3.36
3812 9964 2.493030 CCGTATTCCCACGCGTCT 59.507 61.111 9.86 0.00 40.59 4.18
3953 10105 0.822164 CGAGGTCGTACCCCATCTTT 59.178 55.000 1.06 0.00 39.75 2.52
4054 10214 1.002250 CCCGCGCTTACTATGCTACG 61.002 60.000 5.56 0.00 0.00 3.51
4160 10360 2.388310 TCGTCACAACAAGGACAACA 57.612 45.000 0.00 0.00 33.66 3.33
4170 10370 8.352752 TCAATTCATACATAGATCGTCACAAC 57.647 34.615 0.00 0.00 0.00 3.32
4176 10376 8.363390 AGTGTCATCAATTCATACATAGATCGT 58.637 33.333 0.00 0.00 0.00 3.73
4177 10377 8.754230 AGTGTCATCAATTCATACATAGATCG 57.246 34.615 0.00 0.00 0.00 3.69
4184 10384 9.481340 GCTCTAATAGTGTCATCAATTCATACA 57.519 33.333 0.00 0.00 0.00 2.29
4185 10385 9.481340 TGCTCTAATAGTGTCATCAATTCATAC 57.519 33.333 0.00 0.00 0.00 2.39
4187 10387 8.969260 TTGCTCTAATAGTGTCATCAATTCAT 57.031 30.769 0.00 0.00 0.00 2.57
4218 10430 6.309251 TCGTTTTGCAAACGATTCTTCTTTTT 59.691 30.769 23.54 0.00 46.21 1.94
4222 10434 4.545823 TCGTTTTGCAAACGATTCTTCT 57.454 36.364 23.54 0.00 46.21 2.85
4231 10443 4.497608 TCGTTGAAGATTCGTTTTGCAAAC 59.502 37.500 12.39 6.54 0.00 2.93
4273 10490 4.425577 GTTGAAGATTCGTTTCAGCCAT 57.574 40.909 0.00 0.00 36.07 4.40
4277 10494 2.806244 ACCGGTTGAAGATTCGTTTCAG 59.194 45.455 0.00 0.00 36.07 3.02
4321 10538 2.962253 GCCGTAGTCCATGCGCTC 60.962 66.667 9.73 0.00 35.44 5.03
4322 10539 4.530857 GGCCGTAGTCCATGCGCT 62.531 66.667 9.73 0.00 35.44 5.92
4342 10559 1.410648 GGCCATTGATCACCATGGTCT 60.411 52.381 22.02 5.11 35.99 3.85
4347 10564 0.179009 CGGAGGCCATTGATCACCAT 60.179 55.000 5.01 0.00 0.00 3.55
4373 10590 3.065575 CCGACAAGGCACATAGGAC 57.934 57.895 0.00 0.00 0.00 3.85
4414 10633 1.078918 CCAGACGAAGCATGAGCCA 60.079 57.895 0.00 0.00 43.56 4.75
4431 10650 2.432628 CGTCGAAGCAGGACCACC 60.433 66.667 0.00 0.00 0.00 4.61
4434 10653 1.737008 GAACCGTCGAAGCAGGACC 60.737 63.158 0.00 0.00 0.00 4.46
4435 10654 1.009389 CAGAACCGTCGAAGCAGGAC 61.009 60.000 0.00 0.00 0.00 3.85
4440 10659 0.737715 ATCAGCAGAACCGTCGAAGC 60.738 55.000 0.00 0.00 0.00 3.86
4461 10680 1.734477 CGACACAAGGCCGAGACAG 60.734 63.158 0.00 0.00 0.00 3.51
4462 10681 2.338620 CGACACAAGGCCGAGACA 59.661 61.111 0.00 0.00 0.00 3.41
4463 10682 3.112709 GCGACACAAGGCCGAGAC 61.113 66.667 0.00 0.00 0.00 3.36
4464 10683 4.717629 CGCGACACAAGGCCGAGA 62.718 66.667 0.00 0.00 0.00 4.04
4465 10684 4.717629 TCGCGACACAAGGCCGAG 62.718 66.667 3.71 0.00 0.00 4.63
4468 10687 4.980805 TGGTCGCGACACAAGGCC 62.981 66.667 37.26 20.78 0.00 5.19
4469 10688 2.970324 TTGGTCGCGACACAAGGC 60.970 61.111 37.26 20.87 0.00 4.35
4470 10689 2.935955 GTTGGTCGCGACACAAGG 59.064 61.111 37.26 0.00 0.00 3.61
4471 10690 1.282248 ATCGTTGGTCGCGACACAAG 61.282 55.000 37.26 26.52 41.33 3.16
4472 10691 1.300311 ATCGTTGGTCGCGACACAA 60.300 52.632 37.26 31.89 41.33 3.33
4473 10692 2.019408 CATCGTTGGTCGCGACACA 61.019 57.895 37.26 28.72 41.33 3.72
4474 10693 2.726691 CCATCGTTGGTCGCGACAC 61.727 63.158 37.26 26.85 41.33 3.67
4475 10694 2.431771 CCATCGTTGGTCGCGACA 60.432 61.111 37.26 22.12 41.33 4.35
4484 10703 1.600636 ACAGCCACCACCATCGTTG 60.601 57.895 0.00 0.00 0.00 4.10
4485 10704 1.600636 CACAGCCACCACCATCGTT 60.601 57.895 0.00 0.00 0.00 3.85
4486 10705 2.032528 CACAGCCACCACCATCGT 59.967 61.111 0.00 0.00 0.00 3.73
4487 10706 2.034879 GTCACAGCCACCACCATCG 61.035 63.158 0.00 0.00 0.00 3.84
4488 10707 1.675641 GGTCACAGCCACCACCATC 60.676 63.158 0.00 0.00 33.63 3.51
4489 10708 2.436109 GGTCACAGCCACCACCAT 59.564 61.111 0.00 0.00 33.63 3.55
4490 10709 4.248842 CGGTCACAGCCACCACCA 62.249 66.667 0.00 0.00 32.89 4.17
4491 10710 3.767630 AACGGTCACAGCCACCACC 62.768 63.158 0.00 0.00 32.89 4.61
4492 10711 2.203153 AACGGTCACAGCCACCAC 60.203 61.111 0.00 0.00 32.89 4.16
4493 10712 2.203139 CAACGGTCACAGCCACCA 60.203 61.111 0.00 0.00 32.89 4.17
4494 10713 1.822186 AACAACGGTCACAGCCACC 60.822 57.895 0.00 0.00 0.00 4.61
4495 10714 1.092921 TCAACAACGGTCACAGCCAC 61.093 55.000 0.00 0.00 0.00 5.01
4496 10715 1.092921 GTCAACAACGGTCACAGCCA 61.093 55.000 0.00 0.00 0.00 4.75
4497 10716 1.647084 GTCAACAACGGTCACAGCC 59.353 57.895 0.00 0.00 0.00 4.85
4498 10717 0.814010 AGGTCAACAACGGTCACAGC 60.814 55.000 0.00 0.00 0.00 4.40
4499 10718 1.597663 GAAGGTCAACAACGGTCACAG 59.402 52.381 0.00 0.00 0.00 3.66
4500 10719 1.208535 AGAAGGTCAACAACGGTCACA 59.791 47.619 0.00 0.00 0.00 3.58
4501 10720 1.949465 AGAAGGTCAACAACGGTCAC 58.051 50.000 0.00 0.00 0.00 3.67
4502 10721 2.702592 AAGAAGGTCAACAACGGTCA 57.297 45.000 0.00 0.00 0.00 4.02
4503 10722 3.986277 TCTAAGAAGGTCAACAACGGTC 58.014 45.455 0.00 0.00 0.00 4.79
4504 10723 3.244112 CCTCTAAGAAGGTCAACAACGGT 60.244 47.826 0.00 0.00 0.00 4.83
4505 10724 3.326747 CCTCTAAGAAGGTCAACAACGG 58.673 50.000 0.00 0.00 0.00 4.44
4506 10725 2.737252 GCCTCTAAGAAGGTCAACAACG 59.263 50.000 0.00 0.00 38.79 4.10
4507 10726 3.740115 TGCCTCTAAGAAGGTCAACAAC 58.260 45.455 0.00 0.00 38.79 3.32
4508 10727 4.041567 TGATGCCTCTAAGAAGGTCAACAA 59.958 41.667 0.00 0.00 38.79 2.83
4509 10728 3.582647 TGATGCCTCTAAGAAGGTCAACA 59.417 43.478 0.00 0.00 38.79 3.33
4510 10729 3.935828 GTGATGCCTCTAAGAAGGTCAAC 59.064 47.826 0.00 0.00 38.79 3.18
4511 10730 3.840666 AGTGATGCCTCTAAGAAGGTCAA 59.159 43.478 0.00 0.00 38.79 3.18
4512 10731 3.196469 CAGTGATGCCTCTAAGAAGGTCA 59.804 47.826 0.00 0.00 38.79 4.02
4513 10732 3.449018 TCAGTGATGCCTCTAAGAAGGTC 59.551 47.826 0.00 0.00 38.79 3.85
4514 10733 3.445008 TCAGTGATGCCTCTAAGAAGGT 58.555 45.455 0.00 0.00 38.79 3.50
4515 10734 4.686191 ATCAGTGATGCCTCTAAGAAGG 57.314 45.455 4.39 0.00 39.62 3.46
4516 10735 5.879223 ACAAATCAGTGATGCCTCTAAGAAG 59.121 40.000 6.34 0.00 0.00 2.85
4517 10736 5.809001 ACAAATCAGTGATGCCTCTAAGAA 58.191 37.500 6.34 0.00 0.00 2.52
4518 10737 5.426689 ACAAATCAGTGATGCCTCTAAGA 57.573 39.130 6.34 0.00 0.00 2.10
4519 10738 5.675575 GCAACAAATCAGTGATGCCTCTAAG 60.676 44.000 6.34 0.00 40.38 2.18
4520 10739 4.156556 GCAACAAATCAGTGATGCCTCTAA 59.843 41.667 6.34 0.00 40.38 2.10
4521 10740 3.691118 GCAACAAATCAGTGATGCCTCTA 59.309 43.478 6.34 0.00 40.38 2.43
4522 10741 2.490903 GCAACAAATCAGTGATGCCTCT 59.509 45.455 6.34 0.00 40.38 3.69
4523 10742 2.229543 TGCAACAAATCAGTGATGCCTC 59.770 45.455 6.34 0.00 44.27 4.70
4524 10743 2.230508 CTGCAACAAATCAGTGATGCCT 59.769 45.455 6.34 0.00 44.27 4.75
4525 10744 2.602878 CTGCAACAAATCAGTGATGCC 58.397 47.619 6.34 0.00 44.27 4.40
4526 10745 1.990563 GCTGCAACAAATCAGTGATGC 59.009 47.619 6.34 7.56 44.91 3.91
4527 10746 2.984471 GTGCTGCAACAAATCAGTGATG 59.016 45.455 6.34 0.00 33.09 3.07
4528 10747 2.029649 GGTGCTGCAACAAATCAGTGAT 60.030 45.455 13.80 0.00 33.09 3.06
4529 10748 1.337703 GGTGCTGCAACAAATCAGTGA 59.662 47.619 13.80 0.00 33.09 3.41
4530 10749 1.603678 GGGTGCTGCAACAAATCAGTG 60.604 52.381 20.65 0.00 33.09 3.66
4531 10750 0.675633 GGGTGCTGCAACAAATCAGT 59.324 50.000 20.65 0.00 33.09 3.41
4532 10751 0.037975 GGGGTGCTGCAACAAATCAG 60.038 55.000 20.65 0.00 0.00 2.90
4533 10752 0.469705 AGGGGTGCTGCAACAAATCA 60.470 50.000 20.65 0.00 0.00 2.57
4534 10753 0.244721 GAGGGGTGCTGCAACAAATC 59.755 55.000 20.65 9.93 0.00 2.17
4535 10754 1.187567 GGAGGGGTGCTGCAACAAAT 61.188 55.000 20.65 3.97 0.00 2.32
4536 10755 1.832167 GGAGGGGTGCTGCAACAAA 60.832 57.895 20.65 0.00 0.00 2.83
4537 10756 2.203480 GGAGGGGTGCTGCAACAA 60.203 61.111 20.65 0.00 0.00 2.83
4538 10757 3.177884 AGGAGGGGTGCTGCAACA 61.178 61.111 20.65 0.00 0.00 3.33
4539 10758 2.674380 CAGGAGGGGTGCTGCAAC 60.674 66.667 9.71 9.71 0.00 4.17
4540 10759 4.666253 GCAGGAGGGGTGCTGCAA 62.666 66.667 13.30 0.00 41.89 4.08
4557 10776 4.082523 AGTGTGGCCGGATCCGTG 62.083 66.667 31.22 22.89 37.81 4.94
4558 10777 3.771160 GAGTGTGGCCGGATCCGT 61.771 66.667 31.22 12.25 37.81 4.69
4559 10778 3.432051 GAGAGTGTGGCCGGATCCG 62.432 68.421 27.65 27.65 39.44 4.18
4560 10779 2.501610 GAGAGTGTGGCCGGATCC 59.498 66.667 5.05 0.00 0.00 3.36
4561 10780 2.105128 CGAGAGTGTGGCCGGATC 59.895 66.667 5.05 0.00 0.00 3.36
4562 10781 2.680352 ACGAGAGTGTGGCCGGAT 60.680 61.111 5.05 0.00 46.97 4.18
4573 10792 0.439985 CGGTTGTCATTGCACGAGAG 59.560 55.000 0.00 0.00 0.00 3.20
4574 10793 0.948623 CCGGTTGTCATTGCACGAGA 60.949 55.000 0.00 0.00 0.00 4.04
4575 10794 1.497278 CCGGTTGTCATTGCACGAG 59.503 57.895 0.00 0.00 0.00 4.18
4576 10795 1.963855 CCCGGTTGTCATTGCACGA 60.964 57.895 0.00 0.00 0.00 4.35
4577 10796 1.911293 CTCCCGGTTGTCATTGCACG 61.911 60.000 0.00 0.00 0.00 5.34
4578 10797 1.875963 CTCCCGGTTGTCATTGCAC 59.124 57.895 0.00 0.00 0.00 4.57
4579 10798 1.971167 GCTCCCGGTTGTCATTGCA 60.971 57.895 0.00 0.00 0.00 4.08
4580 10799 1.315257 ATGCTCCCGGTTGTCATTGC 61.315 55.000 0.00 0.00 0.00 3.56
4581 10800 0.452987 CATGCTCCCGGTTGTCATTG 59.547 55.000 0.00 0.00 0.00 2.82
4582 10801 1.315257 GCATGCTCCCGGTTGTCATT 61.315 55.000 11.37 0.00 0.00 2.57
4583 10802 1.750399 GCATGCTCCCGGTTGTCAT 60.750 57.895 11.37 0.00 0.00 3.06
4584 10803 2.359850 GCATGCTCCCGGTTGTCA 60.360 61.111 11.37 0.00 0.00 3.58
4585 10804 2.045926 AGCATGCTCCCGGTTGTC 60.046 61.111 16.30 0.00 0.00 3.18
4586 10805 2.045926 GAGCATGCTCCCGGTTGT 60.046 61.111 33.31 2.86 37.11 3.32
4606 10825 4.363990 ACGAGCAGCAGGACCACG 62.364 66.667 0.00 0.00 0.00 4.94
4607 10826 2.433318 GACGAGCAGCAGGACCAC 60.433 66.667 0.00 0.00 0.00 4.16
4608 10827 4.056125 CGACGAGCAGCAGGACCA 62.056 66.667 0.00 0.00 0.00 4.02
4609 10828 3.575351 AACGACGAGCAGCAGGACC 62.575 63.158 0.00 0.00 0.00 4.46
4610 10829 2.049063 AACGACGAGCAGCAGGAC 60.049 61.111 0.00 0.00 0.00 3.85
4611 10830 2.258591 GAACGACGAGCAGCAGGA 59.741 61.111 0.00 0.00 0.00 3.86
4612 10831 2.811317 GGAACGACGAGCAGCAGG 60.811 66.667 0.00 0.00 0.00 4.85
4613 10832 1.803519 GAGGAACGACGAGCAGCAG 60.804 63.158 0.00 0.00 0.00 4.24
4614 10833 2.258591 GAGGAACGACGAGCAGCA 59.741 61.111 0.00 0.00 0.00 4.41
4615 10834 2.876645 CGAGGAACGACGAGCAGC 60.877 66.667 0.00 0.00 45.77 5.25
4616 10835 2.876645 GCGAGGAACGACGAGCAG 60.877 66.667 0.00 0.00 45.77 4.24
4617 10836 4.415332 GGCGAGGAACGACGAGCA 62.415 66.667 0.00 0.00 45.77 4.26
4635 10854 3.404141 GACGAGGACGAGCAGAGGC 62.404 68.421 0.00 0.00 42.66 4.70
4636 10855 2.766400 GGACGAGGACGAGCAGAGG 61.766 68.421 0.00 0.00 42.66 3.69
4637 10856 1.711060 GAGGACGAGGACGAGCAGAG 61.711 65.000 0.00 0.00 42.66 3.35
4638 10857 1.745864 GAGGACGAGGACGAGCAGA 60.746 63.158 0.00 0.00 42.66 4.26
4639 10858 2.795297 GAGGACGAGGACGAGCAG 59.205 66.667 0.00 0.00 42.66 4.24
4640 10859 3.125573 CGAGGACGAGGACGAGCA 61.126 66.667 0.00 0.00 42.66 4.26
4641 10860 4.539881 GCGAGGACGAGGACGAGC 62.540 72.222 0.00 0.00 42.66 5.03
4642 10861 3.878519 GGCGAGGACGAGGACGAG 61.879 72.222 0.00 0.00 42.66 4.18
4645 10864 3.398353 CTTCGGCGAGGACGAGGAC 62.398 68.421 14.40 0.00 46.39 3.85
4646 10865 3.132139 CTTCGGCGAGGACGAGGA 61.132 66.667 14.40 0.00 46.39 3.71
4647 10866 3.132139 TCTTCGGCGAGGACGAGG 61.132 66.667 18.26 0.00 46.39 4.63
4648 10867 2.100603 GTCTTCGGCGAGGACGAG 59.899 66.667 31.46 16.80 46.39 4.18
4651 10870 1.071567 CTTTCGTCTTCGGCGAGGAC 61.072 60.000 33.91 33.91 39.61 3.85
4652 10871 1.211969 CTTTCGTCTTCGGCGAGGA 59.788 57.895 18.26 18.26 39.61 3.71
4653 10872 1.071567 GACTTTCGTCTTCGGCGAGG 61.072 60.000 13.34 13.34 39.61 4.63
4654 10873 0.386858 TGACTTTCGTCTTCGGCGAG 60.387 55.000 10.46 4.79 40.86 5.03
4655 10874 0.662374 GTGACTTTCGTCTTCGGCGA 60.662 55.000 4.99 4.99 40.86 5.54
4656 10875 0.937699 TGTGACTTTCGTCTTCGGCG 60.938 55.000 0.00 0.00 40.86 6.46
4657 10876 0.507358 GTGTGACTTTCGTCTTCGGC 59.493 55.000 0.00 0.00 40.86 5.54
4658 10877 0.776451 CGTGTGACTTTCGTCTTCGG 59.224 55.000 0.00 0.00 40.86 4.30
4659 10878 0.158928 GCGTGTGACTTTCGTCTTCG 59.841 55.000 0.00 0.00 40.86 3.79
4660 10879 0.158928 CGCGTGTGACTTTCGTCTTC 59.841 55.000 0.00 0.00 40.86 2.87
4661 10880 1.818221 GCGCGTGTGACTTTCGTCTT 61.818 55.000 8.43 0.00 40.86 3.01
4662 10881 2.300787 GCGCGTGTGACTTTCGTCT 61.301 57.895 8.43 0.00 40.86 4.18
4663 10882 2.167918 GCGCGTGTGACTTTCGTC 59.832 61.111 8.43 0.00 40.64 4.20
4664 10883 2.583868 TGCGCGTGTGACTTTCGT 60.584 55.556 8.43 0.00 0.00 3.85
4665 10884 2.128128 GTGCGCGTGTGACTTTCG 60.128 61.111 8.43 0.00 0.00 3.46
4666 10885 1.201825 GAGTGCGCGTGTGACTTTC 59.798 57.895 8.43 0.00 0.00 2.62
4667 10886 2.585869 CGAGTGCGCGTGTGACTTT 61.586 57.895 8.43 0.00 0.00 2.66
4668 10887 3.030308 CGAGTGCGCGTGTGACTT 61.030 61.111 8.43 0.00 0.00 3.01
4679 10898 3.345808 TTTCCAGCGTGCGAGTGC 61.346 61.111 0.00 0.00 43.20 4.40
4680 10899 1.771073 TTGTTTCCAGCGTGCGAGTG 61.771 55.000 0.00 0.00 0.00 3.51
4681 10900 0.884704 ATTGTTTCCAGCGTGCGAGT 60.885 50.000 0.00 0.00 0.00 4.18
4682 10901 1.075542 TATTGTTTCCAGCGTGCGAG 58.924 50.000 0.00 0.00 0.00 5.03
4683 10902 0.793861 GTATTGTTTCCAGCGTGCGA 59.206 50.000 0.00 0.00 0.00 5.10
4684 10903 0.518355 CGTATTGTTTCCAGCGTGCG 60.518 55.000 0.00 0.00 0.00 5.34
4685 10904 0.793104 GCGTATTGTTTCCAGCGTGC 60.793 55.000 0.00 0.00 0.00 5.34
4686 10905 0.796312 AGCGTATTGTTTCCAGCGTG 59.204 50.000 0.00 0.00 0.00 5.34
4687 10906 1.076332 GAGCGTATTGTTTCCAGCGT 58.924 50.000 0.00 0.00 0.00 5.07
4688 10907 1.359848 AGAGCGTATTGTTTCCAGCG 58.640 50.000 0.00 0.00 0.00 5.18
4689 10908 4.119862 TGATAGAGCGTATTGTTTCCAGC 58.880 43.478 0.00 0.00 0.00 4.85
4690 10909 5.233050 CACTGATAGAGCGTATTGTTTCCAG 59.767 44.000 0.00 0.00 0.00 3.86
4691 10910 5.109210 CACTGATAGAGCGTATTGTTTCCA 58.891 41.667 0.00 0.00 0.00 3.53
4692 10911 5.005779 CACACTGATAGAGCGTATTGTTTCC 59.994 44.000 0.00 0.00 0.00 3.13
4693 10912 5.805486 TCACACTGATAGAGCGTATTGTTTC 59.195 40.000 0.00 0.00 0.00 2.78
4701 10920 2.820197 TCAACTCACACTGATAGAGCGT 59.180 45.455 0.00 0.00 32.71 5.07
4702 10921 3.494045 TCAACTCACACTGATAGAGCG 57.506 47.619 0.00 0.00 32.71 5.03
4717 10936 3.327757 TCTGGTGGCTTGAGTATTCAACT 59.672 43.478 0.00 0.00 42.80 3.16
4744 10963 6.581166 GTCGATTTCAAAAAGATTGGTACACC 59.419 38.462 0.00 0.00 39.29 4.16
4789 14044 5.893824 GGAGTTGGAAGAATACCCATTTGAT 59.106 40.000 0.00 0.00 31.66 2.57
4805 14060 2.621998 GAGAATATCGACCGGAGTTGGA 59.378 50.000 9.46 0.00 0.00 3.53
4823 14078 8.059461 TCGGCATTTCTATATATCTAAGGGAGA 58.941 37.037 0.00 0.00 39.01 3.71
4840 14095 0.169009 GGACAAGTGCTCGGCATTTC 59.831 55.000 1.90 0.00 41.91 2.17
4852 14107 1.617947 GGAGCTCCCATCGGACAAGT 61.618 60.000 23.19 0.00 33.32 3.16
4853 14108 1.144936 GGAGCTCCCATCGGACAAG 59.855 63.158 23.19 0.00 33.32 3.16
4854 14109 3.309582 GGAGCTCCCATCGGACAA 58.690 61.111 23.19 0.00 33.32 3.18
4880 14143 4.475345 AGAGAGACCCTGATAAGCGTTAT 58.525 43.478 0.00 0.00 0.00 1.89
4881 14144 3.899726 AGAGAGACCCTGATAAGCGTTA 58.100 45.455 0.00 0.00 0.00 3.18
4886 14149 7.947890 AGACCTTATTAGAGAGACCCTGATAAG 59.052 40.741 0.00 0.00 38.69 1.73
4890 14153 5.735733 AGACCTTATTAGAGAGACCCTGA 57.264 43.478 0.00 0.00 0.00 3.86
4895 14158 6.071278 ACCACACAAGACCTTATTAGAGAGAC 60.071 42.308 0.00 0.00 0.00 3.36
4903 14166 9.227777 GAAGTTATAACCACACAAGACCTTATT 57.772 33.333 12.05 0.00 0.00 1.40
4909 14172 5.701290 AGCTGAAGTTATAACCACACAAGAC 59.299 40.000 12.05 1.79 0.00 3.01
4910 14173 5.865085 AGCTGAAGTTATAACCACACAAGA 58.135 37.500 12.05 0.00 0.00 3.02
4911 14174 6.017109 ACAAGCTGAAGTTATAACCACACAAG 60.017 38.462 12.05 3.58 0.00 3.16
4912 14175 5.825679 ACAAGCTGAAGTTATAACCACACAA 59.174 36.000 12.05 0.00 0.00 3.33
4913 14176 5.373222 ACAAGCTGAAGTTATAACCACACA 58.627 37.500 12.05 6.70 0.00 3.72
4930 14193 4.081406 TGGTAAATGATGCAGAACAAGCT 58.919 39.130 0.00 0.00 0.00 3.74
4943 14206 2.727123 ATGCCGGACATGGTAAATGA 57.273 45.000 5.05 0.00 37.70 2.57
4953 14216 1.620323 CTGATCAGGATATGCCGGACA 59.380 52.381 15.38 2.56 43.84 4.02
4954 14217 1.895798 TCTGATCAGGATATGCCGGAC 59.104 52.381 22.42 0.00 43.84 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.