Multiple sequence alignment - TraesCS6A01G325300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G325300 chr6A 100.000 4696 0 0 1 4696 558979931 558984626 0.000000e+00 8672.0
1 TraesCS6A01G325300 chr6A 100.000 151 0 0 5021 5171 558984951 558985101 3.940000e-71 279.0
2 TraesCS6A01G325300 chr6A 94.767 172 9 0 3065 3236 93769726 93769555 8.530000e-68 268.0
3 TraesCS6A01G325300 chr6A 86.667 225 24 2 2474 2693 535139152 535138929 1.440000e-60 244.0
4 TraesCS6A01G325300 chr6A 92.857 112 8 0 5060 5171 86115376 86115487 4.140000e-36 163.0
5 TraesCS6A01G325300 chr6B 91.482 2254 123 35 233 2476 623739184 623741378 0.000000e+00 3035.0
6 TraesCS6A01G325300 chr6B 96.466 283 5 3 2788 3068 143176384 143176105 3.650000e-126 462.0
7 TraesCS6A01G325300 chr6B 83.929 504 20 24 4236 4696 623742581 623743066 4.790000e-115 425.0
8 TraesCS6A01G325300 chr6B 82.505 463 43 26 3736 4181 623742029 623742470 6.320000e-99 372.0
9 TraesCS6A01G325300 chr6B 92.029 138 6 2 3454 3586 623741688 623741825 6.840000e-44 189.0
10 TraesCS6A01G325300 chr6B 88.596 114 10 1 2677 2790 289698487 289698377 9.030000e-28 135.0
11 TraesCS6A01G325300 chr6B 97.059 34 1 0 5021 5054 623743083 623743116 2.010000e-04 58.4
12 TraesCS6A01G325300 chr6D 94.345 1627 78 10 852 2476 414000154 414001768 0.000000e+00 2483.0
13 TraesCS6A01G325300 chr6D 89.224 464 28 11 232 687 413999466 413999915 1.260000e-155 560.0
14 TraesCS6A01G325300 chr6D 88.565 446 24 16 4267 4696 414002794 414003228 2.760000e-142 516.0
15 TraesCS6A01G325300 chr6D 84.165 461 32 21 3735 4181 414002277 414002710 4.820000e-110 409.0
16 TraesCS6A01G325300 chr6D 78.656 253 23 15 3454 3685 414001943 414002185 6.980000e-29 139.0
17 TraesCS6A01G325300 chr6D 86.076 79 6 4 12 85 413999061 413999139 4.290000e-11 80.5
18 TraesCS6A01G325300 chr6D 100.000 34 0 0 5021 5054 414003247 414003280 4.320000e-06 63.9
19 TraesCS6A01G325300 chr6D 97.143 35 1 0 1 35 413999024 413999058 5.590000e-05 60.2
20 TraesCS6A01G325300 chr5A 90.958 553 45 4 2684 3234 411444810 411445359 0.000000e+00 739.0
21 TraesCS6A01G325300 chr5A 92.971 313 14 5 2788 3097 8070049 8070356 2.840000e-122 449.0
22 TraesCS6A01G325300 chr3A 90.578 467 37 4 2774 3236 531907665 531908128 3.420000e-171 612.0
23 TraesCS6A01G325300 chr3A 94.333 300 10 5 2788 3084 52445096 52445391 2.200000e-123 453.0
24 TraesCS6A01G325300 chr3A 85.778 450 38 19 2697 3128 464234984 464235425 2.200000e-123 453.0
25 TraesCS6A01G325300 chr3A 87.665 227 22 3 2472 2693 690735771 690735996 5.140000e-65 259.0
26 TraesCS6A01G325300 chr3A 93.605 172 11 0 3065 3236 688696403 688696574 1.850000e-64 257.0
27 TraesCS6A01G325300 chr3A 92.697 178 12 1 3066 3242 505743648 505743471 6.640000e-64 255.0
28 TraesCS6A01G325300 chr3A 86.726 226 23 3 2474 2693 690758253 690758029 1.440000e-60 244.0
29 TraesCS6A01G325300 chr3A 94.545 110 6 0 5062 5171 683366751 683366642 2.480000e-38 171.0
30 TraesCS6A01G325300 chr3A 92.857 112 8 0 5060 5171 697523128 697523239 4.140000e-36 163.0
31 TraesCS6A01G325300 chr3A 73.295 528 104 29 1450 1966 623777255 623777756 5.360000e-35 159.0
32 TraesCS6A01G325300 chr7A 95.819 287 6 4 2787 3070 627156430 627156713 4.720000e-125 459.0
33 TraesCS6A01G325300 chr7A 78.764 518 86 16 2725 3236 125710602 125710103 4.990000e-85 326.0
34 TraesCS6A01G325300 chr7A 94.118 170 10 0 3065 3234 193461816 193461647 5.140000e-65 259.0
35 TraesCS6A01G325300 chr7A 87.111 225 22 3 2475 2693 580592696 580592473 1.110000e-61 248.0
36 TraesCS6A01G325300 chr7A 95.413 109 5 0 5063 5171 36145433 36145325 1.910000e-39 174.0
37 TraesCS6A01G325300 chr7A 76.721 305 53 14 1653 1951 511949453 511949161 2.490000e-33 154.0
38 TraesCS6A01G325300 chr7A 91.509 106 8 1 2685 2790 193461918 193461814 1.500000e-30 145.0
39 TraesCS6A01G325300 chr1A 95.205 292 8 4 2782 3070 304614280 304613992 1.700000e-124 457.0
40 TraesCS6A01G325300 chr1A 86.726 226 23 3 2475 2694 240560105 240559881 1.440000e-60 244.0
41 TraesCS6A01G325300 chr1A 86.726 226 21 5 2475 2693 543655451 543655228 5.170000e-60 243.0
42 TraesCS6A01G325300 chr1A 94.495 109 6 0 5063 5171 549860622 549860514 8.900000e-38 169.0
43 TraesCS6A01G325300 chr1A 92.857 112 8 0 5060 5171 363450817 363450928 4.140000e-36 163.0
44 TraesCS6A01G325300 chr1A 79.070 215 39 5 2151 2362 578207162 578206951 5.400000e-30 143.0
45 TraesCS6A01G325300 chr4A 92.652 313 17 3 2691 3001 515666539 515666231 3.670000e-121 446.0
46 TraesCS6A01G325300 chr4A 85.957 235 19 6 2468 2693 628486682 628486911 6.690000e-59 239.0
47 TraesCS6A01G325300 chr2D 94.186 172 10 0 3065 3236 52964700 52964529 3.970000e-66 263.0
48 TraesCS6A01G325300 chr2D 81.221 213 35 4 2129 2340 189286068 189286276 3.200000e-37 167.0
49 TraesCS6A01G325300 chr1B 94.186 172 10 0 3065 3236 368956286 368956115 3.970000e-66 263.0
50 TraesCS6A01G325300 chr1B 79.736 227 37 7 2151 2371 670149485 670149708 6.930000e-34 156.0
51 TraesCS6A01G325300 chr2A 87.168 226 23 2 2475 2694 747605950 747606175 8.600000e-63 252.0
52 TraesCS6A01G325300 chr2A 87.168 226 22 3 2474 2693 613343047 613342823 3.090000e-62 250.0
53 TraesCS6A01G325300 chr2A 92.857 112 8 0 5060 5171 118447544 118447655 4.140000e-36 163.0
54 TraesCS6A01G325300 chr2A 93.578 109 7 0 5063 5171 241962636 241962528 4.140000e-36 163.0
55 TraesCS6A01G325300 chr2A 80.751 213 36 4 2129 2340 203228041 203228249 1.490000e-35 161.0
56 TraesCS6A01G325300 chr2A 80.645 186 26 9 2694 2871 41651013 41650830 9.030000e-28 135.0
57 TraesCS6A01G325300 chr2B 82.479 234 31 10 2129 2359 245130205 245130431 4.080000e-46 196.0
58 TraesCS6A01G325300 chr7B 78.457 311 47 16 1648 1951 437364287 437364584 8.840000e-43 185.0
59 TraesCS6A01G325300 chr7D 77.524 307 47 18 1653 1951 421167983 421168275 1.150000e-36 165.0
60 TraesCS6A01G325300 chr7D 91.346 104 9 0 2687 2790 344416784 344416887 5.400000e-30 143.0
61 TraesCS6A01G325300 chr5D 93.578 109 7 0 5063 5171 352931898 352931790 4.140000e-36 163.0
62 TraesCS6A01G325300 chr5B 92.929 99 7 0 2692 2790 328219160 328219062 1.500000e-30 145.0
63 TraesCS6A01G325300 chr1D 79.621 211 35 7 2165 2371 481500511 481500305 1.500000e-30 145.0
64 TraesCS6A01G325300 chr1D 78.205 234 42 6 2132 2362 481452600 481452373 1.940000e-29 141.0
65 TraesCS6A01G325300 chr4D 89.815 108 9 2 2683 2790 498569506 498569401 2.510000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G325300 chr6A 558979931 558985101 5170 False 4475.50 8672 100.00000 1 5171 2 chr6A.!!$F2 5170
1 TraesCS6A01G325300 chr6B 623739184 623743116 3932 False 815.88 3035 89.40080 233 5054 5 chr6B.!!$F1 4821
2 TraesCS6A01G325300 chr6D 413999024 414003280 4256 False 538.95 2483 89.77175 1 5054 8 chr6D.!!$F1 5053
3 TraesCS6A01G325300 chr5A 411444810 411445359 549 False 739.00 739 90.95800 2684 3234 1 chr5A.!!$F2 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 128 0.032615 AAGCCACAACCCTGACCAAA 60.033 50.0 0.00 0.00 0.00 3.28 F
97 129 0.032615 AGCCACAACCCTGACCAAAA 60.033 50.0 0.00 0.00 0.00 2.44 F
968 1273 0.108585 ACTTGGTCGACAATGCTGGT 59.891 50.0 18.91 3.07 38.65 4.00 F
2358 2673 0.319211 CCTACGTCGTCAACCAAGCA 60.319 55.0 0.00 0.00 0.00 3.91 F
3586 4037 0.317020 AGCGAAAGTTGCTTTGCGTC 60.317 50.0 0.00 1.45 40.48 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1881 2190 1.513586 CGCGAAGAGGTACACGTCC 60.514 63.158 0.00 0.00 0.00 4.79 R
1941 2250 1.622232 GGTAGAACACGCCGTAGTTC 58.378 55.000 18.42 18.42 43.33 3.01 R
2542 2857 0.029300 CGCCACTGTTGGTCTTGTTG 59.971 55.000 0.00 0.00 45.98 3.33 R
3686 4174 0.323269 TCCAATGCGGGCTTGAATGA 60.323 50.000 0.00 0.00 34.36 2.57 R
4518 5161 0.027194 CGAGGCAATGATCAAGCACG 59.973 55.000 20.74 19.70 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 100 0.450983 GCACTGCTCCATCTTCAAGC 59.549 55.000 0.00 0.00 36.56 4.01
71 103 2.033328 CTGCTCCATCTTCAAGCGCG 62.033 60.000 0.00 0.00 38.90 6.86
86 118 3.723348 GCGACGGGAAGCCACAAC 61.723 66.667 0.00 0.00 0.00 3.32
87 119 3.047877 CGACGGGAAGCCACAACC 61.048 66.667 0.00 0.00 0.00 3.77
88 120 2.671963 GACGGGAAGCCACAACCC 60.672 66.667 0.00 0.00 40.17 4.11
89 121 3.175710 ACGGGAAGCCACAACCCT 61.176 61.111 0.00 0.00 41.28 4.34
91 123 2.843545 GGGAAGCCACAACCCTGA 59.156 61.111 0.00 0.00 40.39 3.86
92 124 1.603739 GGGAAGCCACAACCCTGAC 60.604 63.158 0.00 0.00 40.39 3.51
93 125 1.603739 GGAAGCCACAACCCTGACC 60.604 63.158 0.00 0.00 0.00 4.02
94 126 1.150536 GAAGCCACAACCCTGACCA 59.849 57.895 0.00 0.00 0.00 4.02
95 127 0.467290 GAAGCCACAACCCTGACCAA 60.467 55.000 0.00 0.00 0.00 3.67
96 128 0.032615 AAGCCACAACCCTGACCAAA 60.033 50.000 0.00 0.00 0.00 3.28
97 129 0.032615 AGCCACAACCCTGACCAAAA 60.033 50.000 0.00 0.00 0.00 2.44
98 130 0.389025 GCCACAACCCTGACCAAAAG 59.611 55.000 0.00 0.00 0.00 2.27
99 131 2.026905 GCCACAACCCTGACCAAAAGA 61.027 52.381 0.00 0.00 0.00 2.52
100 132 2.597455 CCACAACCCTGACCAAAAGAT 58.403 47.619 0.00 0.00 0.00 2.40
101 133 2.558359 CCACAACCCTGACCAAAAGATC 59.442 50.000 0.00 0.00 0.00 2.75
102 134 3.221771 CACAACCCTGACCAAAAGATCA 58.778 45.455 0.00 0.00 0.00 2.92
103 135 3.828451 CACAACCCTGACCAAAAGATCAT 59.172 43.478 0.00 0.00 0.00 2.45
105 137 4.524328 ACAACCCTGACCAAAAGATCATTC 59.476 41.667 0.00 0.00 0.00 2.67
106 138 4.387026 ACCCTGACCAAAAGATCATTCA 57.613 40.909 0.00 0.00 0.00 2.57
109 141 4.708421 CCCTGACCAAAAGATCATTCATGT 59.292 41.667 0.00 0.00 0.00 3.21
110 142 5.393787 CCCTGACCAAAAGATCATTCATGTG 60.394 44.000 0.00 0.00 0.00 3.21
111 143 5.184479 CCTGACCAAAAGATCATTCATGTGT 59.816 40.000 0.00 0.00 0.00 3.72
112 144 6.294899 CCTGACCAAAAGATCATTCATGTGTT 60.295 38.462 0.00 0.00 0.00 3.32
113 145 6.448852 TGACCAAAAGATCATTCATGTGTTG 58.551 36.000 0.00 0.00 0.00 3.33
115 147 5.011329 ACCAAAAGATCATTCATGTGTTGCT 59.989 36.000 0.00 0.00 0.00 3.91
116 148 5.929992 CCAAAAGATCATTCATGTGTTGCTT 59.070 36.000 0.00 0.00 0.00 3.91
117 149 6.425721 CCAAAAGATCATTCATGTGTTGCTTT 59.574 34.615 0.00 0.00 0.00 3.51
120 213 4.219944 AGATCATTCATGTGTTGCTTTGCT 59.780 37.500 0.00 0.00 0.00 3.91
124 217 0.863144 CATGTGTTGCTTTGCTTGCC 59.137 50.000 0.00 0.00 0.00 4.52
153 320 2.177394 TGGCAGCTACGAAATTCACA 57.823 45.000 0.00 0.00 0.00 3.58
154 321 2.710377 TGGCAGCTACGAAATTCACAT 58.290 42.857 0.00 0.00 0.00 3.21
162 329 0.248215 CGAAATTCACATGAGGCCGC 60.248 55.000 0.00 0.00 0.00 6.53
214 381 4.873129 CGCGCGTATGGCTGGACT 62.873 66.667 24.19 0.00 40.44 3.85
219 386 2.005960 GCGTATGGCTGGACTCGACT 62.006 60.000 0.00 0.00 39.11 4.18
221 388 1.103803 GTATGGCTGGACTCGACTGA 58.896 55.000 0.00 0.00 0.00 3.41
222 389 1.103803 TATGGCTGGACTCGACTGAC 58.896 55.000 0.00 0.00 0.00 3.51
225 392 2.878429 CTGGACTCGACTGACCGG 59.122 66.667 0.00 0.00 0.00 5.28
226 393 1.972223 CTGGACTCGACTGACCGGT 60.972 63.158 6.92 6.92 0.00 5.28
227 394 2.201436 CTGGACTCGACTGACCGGTG 62.201 65.000 14.63 0.00 0.00 4.94
229 396 1.521450 GGACTCGACTGACCGGTGAA 61.521 60.000 14.63 0.00 0.00 3.18
256 472 1.828461 TAACCACGTCGGCCCATTGA 61.828 55.000 0.00 0.00 39.03 2.57
317 533 1.270625 CGCTCCAAACTACAAGTCCCA 60.271 52.381 0.00 0.00 0.00 4.37
318 534 2.152016 GCTCCAAACTACAAGTCCCAC 58.848 52.381 0.00 0.00 0.00 4.61
319 535 2.413837 CTCCAAACTACAAGTCCCACG 58.586 52.381 0.00 0.00 0.00 4.94
320 536 1.764134 TCCAAACTACAAGTCCCACGT 59.236 47.619 0.00 0.00 0.00 4.49
321 537 1.871039 CCAAACTACAAGTCCCACGTG 59.129 52.381 9.08 9.08 33.76 4.49
322 538 2.557317 CAAACTACAAGTCCCACGTGT 58.443 47.619 15.65 0.96 43.02 4.49
323 539 3.493002 CCAAACTACAAGTCCCACGTGTA 60.493 47.826 15.65 0.00 40.98 2.90
324 540 3.375782 AACTACAAGTCCCACGTGTAC 57.624 47.619 15.65 12.22 40.98 2.90
325 541 1.267806 ACTACAAGTCCCACGTGTACG 59.732 52.381 15.65 2.43 40.98 3.67
426 648 2.607750 AAGGAGAGCGGGGCAGAA 60.608 61.111 0.00 0.00 0.00 3.02
488 710 1.570347 TAACCACACGCCATCAACGC 61.570 55.000 0.00 0.00 0.00 4.84
659 882 3.540367 AAGCCACGTAACCCCACGG 62.540 63.158 0.00 0.00 46.12 4.94
754 977 1.686587 CTTTTCCCCCGCCATAAATCC 59.313 52.381 0.00 0.00 0.00 3.01
786 1009 4.631740 TCCCTCGCTCCCCACACA 62.632 66.667 0.00 0.00 0.00 3.72
787 1010 4.394712 CCCTCGCTCCCCACACAC 62.395 72.222 0.00 0.00 0.00 3.82
798 1021 1.071471 CCACACACTCTCCACCACC 59.929 63.158 0.00 0.00 0.00 4.61
804 1027 3.775654 CTCTCCACCACCTCGCCC 61.776 72.222 0.00 0.00 0.00 6.13
827 1050 3.112709 GCCGTGACGAACTCTGCC 61.113 66.667 6.54 0.00 0.00 4.85
829 1052 1.444553 CCGTGACGAACTCTGCCTC 60.445 63.158 6.54 0.00 0.00 4.70
830 1053 1.797933 CGTGACGAACTCTGCCTCG 60.798 63.158 0.00 0.00 40.87 4.63
937 1234 2.739671 GTAACCACCGTGCCGACC 60.740 66.667 0.00 0.00 0.00 4.79
939 1236 2.585341 TAACCACCGTGCCGACCAT 61.585 57.895 0.00 0.00 0.00 3.55
941 1238 4.386951 CCACCGTGCCGACCATGA 62.387 66.667 0.00 0.00 31.89 3.07
942 1239 2.358125 CACCGTGCCGACCATGAA 60.358 61.111 0.00 0.00 31.89 2.57
943 1240 1.963855 CACCGTGCCGACCATGAAA 60.964 57.895 0.00 0.00 31.89 2.69
944 1241 1.671054 ACCGTGCCGACCATGAAAG 60.671 57.895 0.00 0.00 31.89 2.62
945 1242 2.480555 CGTGCCGACCATGAAAGC 59.519 61.111 0.00 0.00 31.89 3.51
946 1243 2.034879 CGTGCCGACCATGAAAGCT 61.035 57.895 0.00 0.00 31.89 3.74
948 1245 0.674895 GTGCCGACCATGAAAGCTCT 60.675 55.000 0.00 0.00 0.00 4.09
949 1246 0.901827 TGCCGACCATGAAAGCTCTA 59.098 50.000 0.00 0.00 0.00 2.43
950 1247 1.291132 GCCGACCATGAAAGCTCTAC 58.709 55.000 0.00 0.00 0.00 2.59
951 1248 1.134670 GCCGACCATGAAAGCTCTACT 60.135 52.381 0.00 0.00 0.00 2.57
965 1270 2.675317 GCTCTACTTGGTCGACAATGCT 60.675 50.000 18.91 2.46 38.65 3.79
968 1273 0.108585 ACTTGGTCGACAATGCTGGT 59.891 50.000 18.91 3.07 38.65 4.00
972 1277 0.602638 GGTCGACAATGCTGGTGTGA 60.603 55.000 18.91 0.00 0.00 3.58
976 1281 2.226200 TCGACAATGCTGGTGTGATTTG 59.774 45.455 0.00 0.00 0.00 2.32
996 1301 1.871039 GCTTTGCTTACTGACGGTGAA 59.129 47.619 0.00 0.00 0.00 3.18
997 1302 2.484264 GCTTTGCTTACTGACGGTGAAT 59.516 45.455 0.00 0.00 0.00 2.57
998 1303 3.667960 GCTTTGCTTACTGACGGTGAATG 60.668 47.826 0.00 0.00 0.00 2.67
999 1304 1.438651 TGCTTACTGACGGTGAATGC 58.561 50.000 0.00 0.00 0.00 3.56
1371 1680 1.578367 CATGATCAACGTGCACGCG 60.578 57.895 37.35 28.08 44.43 6.01
1476 1785 2.975799 GCCGGCGTGTTCAAGGAA 60.976 61.111 12.58 0.00 0.00 3.36
2355 2670 1.372004 CGCCTACGTCGTCAACCAA 60.372 57.895 0.00 0.00 33.53 3.67
2358 2673 0.319211 CCTACGTCGTCAACCAAGCA 60.319 55.000 0.00 0.00 0.00 3.91
2382 2697 3.703127 GAGTCCCCGTTCCCGCTT 61.703 66.667 0.00 0.00 0.00 4.68
2386 2701 0.393402 GTCCCCGTTCCCGCTTAATT 60.393 55.000 0.00 0.00 0.00 1.40
2419 2734 1.398390 GCCTGCAAAATCACTCGTAGG 59.602 52.381 0.00 0.00 34.67 3.18
2434 2749 1.377594 TAGGAGTACCGCTCGTGCA 60.378 57.895 10.43 0.00 45.03 4.57
2463 2778 1.130373 ACGTCCATTACTTGCATTGCG 59.870 47.619 3.84 0.00 0.00 4.85
2466 2781 3.429085 GTCCATTACTTGCATTGCGAAG 58.571 45.455 15.00 15.00 0.00 3.79
2484 2799 5.873179 CGAAGCAAAATGTACTCCCTTAA 57.127 39.130 0.00 0.00 0.00 1.85
2485 2800 6.436843 CGAAGCAAAATGTACTCCCTTAAT 57.563 37.500 0.00 0.00 0.00 1.40
2486 2801 6.852664 CGAAGCAAAATGTACTCCCTTAATT 58.147 36.000 0.00 0.00 0.00 1.40
2487 2802 7.312899 CGAAGCAAAATGTACTCCCTTAATTT 58.687 34.615 0.00 0.00 0.00 1.82
2488 2803 7.484959 CGAAGCAAAATGTACTCCCTTAATTTC 59.515 37.037 0.00 0.00 0.00 2.17
2489 2804 7.775053 AGCAAAATGTACTCCCTTAATTTCA 57.225 32.000 0.00 0.00 0.00 2.69
2490 2805 8.189119 AGCAAAATGTACTCCCTTAATTTCAA 57.811 30.769 0.00 0.00 0.00 2.69
2491 2806 8.646900 AGCAAAATGTACTCCCTTAATTTCAAA 58.353 29.630 0.00 0.00 0.00 2.69
2492 2807 9.267084 GCAAAATGTACTCCCTTAATTTCAAAA 57.733 29.630 0.00 0.00 0.00 2.44
2501 2816 8.621286 ACTCCCTTAATTTCAAAATATAGTGCG 58.379 33.333 0.00 0.00 0.00 5.34
2502 2817 7.422399 TCCCTTAATTTCAAAATATAGTGCGC 58.578 34.615 0.00 0.00 0.00 6.09
2503 2818 6.640907 CCCTTAATTTCAAAATATAGTGCGCC 59.359 38.462 4.18 0.00 0.00 6.53
2504 2819 6.640907 CCTTAATTTCAAAATATAGTGCGCCC 59.359 38.462 4.18 0.00 0.00 6.13
2505 2820 5.590530 AATTTCAAAATATAGTGCGCCCA 57.409 34.783 4.18 0.00 0.00 5.36
2506 2821 4.364415 TTTCAAAATATAGTGCGCCCAC 57.636 40.909 4.18 0.00 42.39 4.61
2507 2822 1.937223 TCAAAATATAGTGCGCCCACG 59.063 47.619 4.18 0.00 46.62 4.94
2517 2832 3.737172 CGCCCACGCTTTCCAAGG 61.737 66.667 0.00 0.00 0.00 3.61
2518 2833 2.597510 GCCCACGCTTTCCAAGGT 60.598 61.111 0.00 0.00 0.00 3.50
2519 2834 2.626780 GCCCACGCTTTCCAAGGTC 61.627 63.158 0.00 0.00 0.00 3.85
2520 2835 1.073199 CCCACGCTTTCCAAGGTCT 59.927 57.895 0.00 0.00 0.00 3.85
2521 2836 0.323629 CCCACGCTTTCCAAGGTCTA 59.676 55.000 0.00 0.00 0.00 2.59
2522 2837 1.271163 CCCACGCTTTCCAAGGTCTAA 60.271 52.381 0.00 0.00 0.00 2.10
2523 2838 2.618045 CCCACGCTTTCCAAGGTCTAAT 60.618 50.000 0.00 0.00 0.00 1.73
2524 2839 3.081804 CCACGCTTTCCAAGGTCTAATT 58.918 45.455 0.00 0.00 0.00 1.40
2525 2840 3.506067 CCACGCTTTCCAAGGTCTAATTT 59.494 43.478 0.00 0.00 0.00 1.82
2526 2841 4.022329 CCACGCTTTCCAAGGTCTAATTTT 60.022 41.667 0.00 0.00 0.00 1.82
2527 2842 5.182380 CCACGCTTTCCAAGGTCTAATTTTA 59.818 40.000 0.00 0.00 0.00 1.52
2528 2843 6.294286 CCACGCTTTCCAAGGTCTAATTTTAA 60.294 38.462 0.00 0.00 0.00 1.52
2529 2844 6.581166 CACGCTTTCCAAGGTCTAATTTTAAC 59.419 38.462 0.00 0.00 0.00 2.01
2530 2845 6.090783 CGCTTTCCAAGGTCTAATTTTAACC 58.909 40.000 0.00 0.00 0.00 2.85
2531 2846 6.294286 CGCTTTCCAAGGTCTAATTTTAACCA 60.294 38.462 6.41 0.00 35.43 3.67
2532 2847 7.576856 CGCTTTCCAAGGTCTAATTTTAACCAT 60.577 37.037 6.41 0.00 35.43 3.55
2533 2848 8.745590 GCTTTCCAAGGTCTAATTTTAACCATA 58.254 33.333 6.41 0.00 35.43 2.74
2551 2866 9.984190 TTAACCATAAATTTAACCAACAAGACC 57.016 29.630 1.21 0.00 0.00 3.85
2552 2867 7.604657 ACCATAAATTTAACCAACAAGACCA 57.395 32.000 1.21 0.00 0.00 4.02
2553 2868 8.024145 ACCATAAATTTAACCAACAAGACCAA 57.976 30.769 1.21 0.00 0.00 3.67
2554 2869 7.929245 ACCATAAATTTAACCAACAAGACCAAC 59.071 33.333 1.21 0.00 0.00 3.77
2555 2870 7.928706 CCATAAATTTAACCAACAAGACCAACA 59.071 33.333 1.21 0.00 0.00 3.33
2556 2871 8.977505 CATAAATTTAACCAACAAGACCAACAG 58.022 33.333 1.21 0.00 0.00 3.16
2557 2872 6.538945 AATTTAACCAACAAGACCAACAGT 57.461 33.333 0.00 0.00 0.00 3.55
2558 2873 4.974368 TTAACCAACAAGACCAACAGTG 57.026 40.909 0.00 0.00 0.00 3.66
2567 2882 2.429930 CCAACAGTGGCGGGAGAA 59.570 61.111 0.00 0.00 38.35 2.87
2568 2883 1.228124 CCAACAGTGGCGGGAGAAA 60.228 57.895 0.00 0.00 38.35 2.52
2569 2884 0.821711 CCAACAGTGGCGGGAGAAAA 60.822 55.000 0.00 0.00 38.35 2.29
2570 2885 1.028905 CAACAGTGGCGGGAGAAAAA 58.971 50.000 0.00 0.00 0.00 1.94
2631 2946 9.801873 TTCACTAATATAATTTTTGCTTCTGCC 57.198 29.630 0.00 0.00 38.71 4.85
2632 2947 8.965819 TCACTAATATAATTTTTGCTTCTGCCA 58.034 29.630 0.00 0.00 38.71 4.92
2633 2948 9.023967 CACTAATATAATTTTTGCTTCTGCCAC 57.976 33.333 0.00 0.00 38.71 5.01
2634 2949 8.748412 ACTAATATAATTTTTGCTTCTGCCACA 58.252 29.630 0.00 0.00 38.71 4.17
2635 2950 9.585099 CTAATATAATTTTTGCTTCTGCCACAA 57.415 29.630 0.00 0.00 38.71 3.33
2637 2952 6.973229 ATAATTTTTGCTTCTGCCACAATC 57.027 33.333 0.00 0.00 38.71 2.67
2638 2953 2.420628 TTTTGCTTCTGCCACAATCG 57.579 45.000 0.00 0.00 38.71 3.34
2639 2954 0.597568 TTTGCTTCTGCCACAATCGG 59.402 50.000 0.00 0.00 38.71 4.18
2640 2955 0.537143 TTGCTTCTGCCACAATCGGT 60.537 50.000 0.00 0.00 38.71 4.69
2641 2956 0.955428 TGCTTCTGCCACAATCGGTC 60.955 55.000 0.00 0.00 38.71 4.79
2642 2957 0.674895 GCTTCTGCCACAATCGGTCT 60.675 55.000 0.00 0.00 0.00 3.85
2643 2958 1.813513 CTTCTGCCACAATCGGTCTT 58.186 50.000 0.00 0.00 0.00 3.01
2644 2959 2.154462 CTTCTGCCACAATCGGTCTTT 58.846 47.619 0.00 0.00 0.00 2.52
2645 2960 2.270352 TCTGCCACAATCGGTCTTTT 57.730 45.000 0.00 0.00 0.00 2.27
2646 2961 3.410631 TCTGCCACAATCGGTCTTTTA 57.589 42.857 0.00 0.00 0.00 1.52
2647 2962 3.745799 TCTGCCACAATCGGTCTTTTAA 58.254 40.909 0.00 0.00 0.00 1.52
2648 2963 4.138290 TCTGCCACAATCGGTCTTTTAAA 58.862 39.130 0.00 0.00 0.00 1.52
2649 2964 4.764823 TCTGCCACAATCGGTCTTTTAAAT 59.235 37.500 0.00 0.00 0.00 1.40
2650 2965 5.242838 TCTGCCACAATCGGTCTTTTAAATT 59.757 36.000 0.00 0.00 0.00 1.82
2651 2966 5.848406 TGCCACAATCGGTCTTTTAAATTT 58.152 33.333 0.00 0.00 0.00 1.82
2652 2967 6.982852 TGCCACAATCGGTCTTTTAAATTTA 58.017 32.000 0.00 0.00 0.00 1.40
2653 2968 7.434492 TGCCACAATCGGTCTTTTAAATTTAA 58.566 30.769 6.54 6.54 0.00 1.52
2654 2969 7.596995 TGCCACAATCGGTCTTTTAAATTTAAG 59.403 33.333 10.40 2.89 0.00 1.85
2655 2970 7.062956 GCCACAATCGGTCTTTTAAATTTAAGG 59.937 37.037 10.40 8.25 0.00 2.69
2656 2971 8.085909 CCACAATCGGTCTTTTAAATTTAAGGT 58.914 33.333 10.40 0.00 0.00 3.50
2657 2972 9.471084 CACAATCGGTCTTTTAAATTTAAGGTT 57.529 29.630 10.40 0.00 0.00 3.50
2671 2986 7.924103 AATTTAAGGTTAAAGTTGAAGCACG 57.076 32.000 4.98 0.00 36.22 5.34
2672 2987 3.982576 AAGGTTAAAGTTGAAGCACGG 57.017 42.857 4.98 0.00 0.00 4.94
2673 2988 2.227194 AGGTTAAAGTTGAAGCACGGG 58.773 47.619 4.98 0.00 0.00 5.28
2674 2989 2.158726 AGGTTAAAGTTGAAGCACGGGA 60.159 45.455 4.98 0.00 0.00 5.14
2675 2990 2.817844 GGTTAAAGTTGAAGCACGGGAT 59.182 45.455 0.00 0.00 0.00 3.85
2676 2991 4.004982 GGTTAAAGTTGAAGCACGGGATA 58.995 43.478 0.00 0.00 0.00 2.59
2677 2992 4.094442 GGTTAAAGTTGAAGCACGGGATAG 59.906 45.833 0.00 0.00 0.00 2.08
2678 2993 3.695830 AAAGTTGAAGCACGGGATAGA 57.304 42.857 0.00 0.00 0.00 1.98
2679 2994 2.969628 AGTTGAAGCACGGGATAGAG 57.030 50.000 0.00 0.00 0.00 2.43
2680 2995 1.482593 AGTTGAAGCACGGGATAGAGG 59.517 52.381 0.00 0.00 0.00 3.69
2681 2996 1.480954 GTTGAAGCACGGGATAGAGGA 59.519 52.381 0.00 0.00 0.00 3.71
2682 2997 1.860641 TGAAGCACGGGATAGAGGAA 58.139 50.000 0.00 0.00 0.00 3.36
2683 2998 1.757118 TGAAGCACGGGATAGAGGAAG 59.243 52.381 0.00 0.00 0.00 3.46
2684 2999 0.466124 AAGCACGGGATAGAGGAAGC 59.534 55.000 0.00 0.00 0.00 3.86
2685 3000 0.687757 AGCACGGGATAGAGGAAGCA 60.688 55.000 0.00 0.00 0.00 3.91
2686 3001 0.530870 GCACGGGATAGAGGAAGCAC 60.531 60.000 0.00 0.00 0.00 4.40
2687 3002 1.115467 CACGGGATAGAGGAAGCACT 58.885 55.000 0.00 0.00 0.00 4.40
2688 3003 2.307768 CACGGGATAGAGGAAGCACTA 58.692 52.381 0.00 0.00 0.00 2.74
2689 3004 2.034812 CACGGGATAGAGGAAGCACTAC 59.965 54.545 0.00 0.00 0.00 2.73
2690 3005 2.307768 CGGGATAGAGGAAGCACTACA 58.692 52.381 0.00 0.00 0.00 2.74
2691 3006 2.894126 CGGGATAGAGGAAGCACTACAT 59.106 50.000 0.00 0.00 0.00 2.29
2692 3007 3.322254 CGGGATAGAGGAAGCACTACATT 59.678 47.826 0.00 0.00 0.00 2.71
2703 3018 5.221541 GGAAGCACTACATTAGGCTAGTCAT 60.222 44.000 0.00 0.00 33.77 3.06
2722 3037 5.361285 AGTCATAGTGGGAGTAACTTAGCTG 59.639 44.000 0.00 0.00 0.00 4.24
2723 3038 5.360144 GTCATAGTGGGAGTAACTTAGCTGA 59.640 44.000 0.00 0.00 0.00 4.26
2731 3046 7.868415 GTGGGAGTAACTTAGCTGATAACATAG 59.132 40.741 0.00 0.00 0.00 2.23
2733 3048 7.434492 GGAGTAACTTAGCTGATAACATAGCA 58.566 38.462 0.00 0.00 42.29 3.49
2734 3049 8.091449 GGAGTAACTTAGCTGATAACATAGCAT 58.909 37.037 0.00 0.00 42.29 3.79
2740 3055 9.144747 ACTTAGCTGATAACATAGCATATTTCG 57.855 33.333 0.00 0.00 42.29 3.46
2764 3079 6.100404 AGAAAATTCTGCTTATGTGGCAAA 57.900 33.333 0.00 0.00 39.30 3.68
2777 3092 9.403110 GCTTATGTGGCAAATAATTAATGAGAG 57.597 33.333 10.46 0.00 0.00 3.20
2801 3116 8.492415 AGATAGTAATATAAGGCTGGTCACAA 57.508 34.615 0.00 0.00 0.00 3.33
2860 3175 2.692557 ACAACTTTGCTTATGTGGCACA 59.307 40.909 24.36 24.36 39.55 4.57
2984 3301 6.642950 GCATGACACTACATAGATGTTCCTAC 59.357 42.308 0.00 0.00 41.97 3.18
2993 3310 6.382087 ACATAGATGTTCCTACCCACTATGA 58.618 40.000 1.97 0.00 37.90 2.15
2996 3313 5.529289 AGATGTTCCTACCCACTATGAAGA 58.471 41.667 0.00 0.00 0.00 2.87
2997 3314 6.146760 AGATGTTCCTACCCACTATGAAGAT 58.853 40.000 0.00 0.00 0.00 2.40
2998 3315 7.306013 AGATGTTCCTACCCACTATGAAGATA 58.694 38.462 0.00 0.00 0.00 1.98
2999 3316 6.726490 TGTTCCTACCCACTATGAAGATAC 57.274 41.667 0.00 0.00 0.00 2.24
3002 3319 7.724506 TGTTCCTACCCACTATGAAGATACTAG 59.275 40.741 0.00 0.00 0.00 2.57
3111 3428 6.400515 GCTTTTCAAGACAAGATGAGTCTACG 60.401 42.308 0.41 0.00 45.11 3.51
3131 3448 5.931441 ACGAGCTAATAAATGAAGCCATC 57.069 39.130 0.00 0.00 36.92 3.51
3134 3451 7.390027 ACGAGCTAATAAATGAAGCCATCTAT 58.610 34.615 0.00 0.00 36.92 1.98
3216 3533 7.228314 TGCATGACAGTAGTCTAAGTTACTT 57.772 36.000 2.32 2.32 45.20 2.24
3234 3551 1.561542 CTTCCCACTATGACCAGCCTT 59.438 52.381 0.00 0.00 0.00 4.35
3235 3552 2.561209 TCCCACTATGACCAGCCTTA 57.439 50.000 0.00 0.00 0.00 2.69
3236 3553 3.060479 TCCCACTATGACCAGCCTTAT 57.940 47.619 0.00 0.00 0.00 1.73
3237 3554 2.705658 TCCCACTATGACCAGCCTTATG 59.294 50.000 0.00 0.00 0.00 1.90
3238 3555 2.224621 CCCACTATGACCAGCCTTATGG 60.225 54.545 0.00 0.00 46.47 2.74
3239 3556 2.705658 CCACTATGACCAGCCTTATGGA 59.294 50.000 0.00 0.00 43.57 3.41
3240 3557 3.136443 CCACTATGACCAGCCTTATGGAA 59.864 47.826 0.00 0.00 43.57 3.53
3241 3558 4.202503 CCACTATGACCAGCCTTATGGAAT 60.203 45.833 0.00 0.00 43.57 3.01
3242 3559 4.758674 CACTATGACCAGCCTTATGGAATG 59.241 45.833 0.00 0.00 43.57 2.67
3243 3560 2.734755 TGACCAGCCTTATGGAATGG 57.265 50.000 14.38 14.38 43.57 3.16
3244 3561 2.204463 TGACCAGCCTTATGGAATGGA 58.796 47.619 20.02 2.86 43.57 3.41
3245 3562 2.173356 TGACCAGCCTTATGGAATGGAG 59.827 50.000 20.02 2.40 43.57 3.86
3246 3563 1.496429 ACCAGCCTTATGGAATGGAGG 59.504 52.381 20.02 6.27 43.57 4.30
3250 3567 3.117738 CAGCCTTATGGAATGGAGGAAGT 60.118 47.826 0.00 0.00 34.11 3.01
3254 3571 5.013599 GCCTTATGGAATGGAGGAAGTAGAT 59.986 44.000 0.00 0.00 34.11 1.98
3255 3572 6.471146 CCTTATGGAATGGAGGAAGTAGATG 58.529 44.000 0.00 0.00 34.11 2.90
3256 3573 3.845781 TGGAATGGAGGAAGTAGATGC 57.154 47.619 0.00 0.00 0.00 3.91
3260 3577 4.591072 GGAATGGAGGAAGTAGATGCTAGT 59.409 45.833 0.00 0.00 0.00 2.57
3271 3588 4.828387 AGTAGATGCTAGTTGCTAGGTACC 59.172 45.833 2.73 2.73 43.37 3.34
3272 3589 2.623889 AGATGCTAGTTGCTAGGTACCG 59.376 50.000 6.18 0.00 43.37 4.02
3273 3590 1.843368 TGCTAGTTGCTAGGTACCGT 58.157 50.000 6.18 0.00 43.37 4.83
3290 3607 1.669999 CGTGAGTACCCCTAACCCGG 61.670 65.000 0.00 0.00 0.00 5.73
3304 3621 0.323087 ACCCGGGCAAAATGTAGGTC 60.323 55.000 24.08 0.00 0.00 3.85
3342 3666 3.040409 GCAAAATGCTGGTGCTAGC 57.960 52.632 8.10 8.10 40.96 3.42
3377 3806 5.049129 GCTAATGCAGAGAATGGGTTATCAC 60.049 44.000 2.62 0.00 39.41 3.06
3378 3807 3.998913 TGCAGAGAATGGGTTATCACA 57.001 42.857 0.00 0.00 0.00 3.58
3461 3904 5.638596 AATTTGGTAGGAAAATCGGTGAC 57.361 39.130 0.00 0.00 0.00 3.67
3475 3918 1.308998 GGTGACAGTTTGTGTGGGAG 58.691 55.000 0.00 0.00 40.56 4.30
3514 3960 2.704065 AGAAACATCCCCGTACCATAGG 59.296 50.000 0.00 0.00 0.00 2.57
3533 3979 2.171448 AGGCGGCAATTTACAGAGAGAT 59.829 45.455 13.08 0.00 0.00 2.75
3562 4013 2.485677 CAGGCACGGCTCAAATCAT 58.514 52.632 0.00 0.00 0.00 2.45
3586 4037 0.317020 AGCGAAAGTTGCTTTGCGTC 60.317 50.000 0.00 1.45 40.48 5.19
3587 4038 1.268778 GCGAAAGTTGCTTTGCGTCC 61.269 55.000 0.00 0.00 33.49 4.79
3624 4112 0.734309 CATGCACGCAGCCTTAATCA 59.266 50.000 0.00 0.00 44.83 2.57
3632 4120 1.398390 GCAGCCTTAATCACGACAAGG 59.602 52.381 0.00 5.32 41.53 3.61
3636 4124 2.678336 GCCTTAATCACGACAAGGGAAG 59.322 50.000 9.98 0.00 39.42 3.46
3656 4144 4.395583 GCAGCTGTGCCTTCACGC 62.396 66.667 16.64 0.00 46.01 5.34
3657 4145 2.667536 CAGCTGTGCCTTCACGCT 60.668 61.111 5.25 8.24 46.13 5.07
3669 4157 1.575922 TCACGCTGCTGTGATTTGC 59.424 52.632 18.47 0.00 43.62 3.68
3685 4173 0.821301 TTGCGACCCAAATCTGCACA 60.821 50.000 0.00 0.00 34.90 4.57
3686 4174 0.608856 TGCGACCCAAATCTGCACAT 60.609 50.000 0.00 0.00 0.00 3.21
3767 4297 3.056465 CCAGTCAGGGTCTCAGAGTTTAC 60.056 52.174 0.00 0.00 0.00 2.01
3799 4329 2.997897 GGCTGTCGGTCAGGTCCT 60.998 66.667 4.49 0.00 43.78 3.85
3802 4332 3.302347 CTGTCGGTCAGGTCCTGCC 62.302 68.421 14.64 16.53 40.23 4.85
3803 4333 3.311110 GTCGGTCAGGTCCTGCCA 61.311 66.667 23.81 13.17 40.61 4.92
3804 4334 2.997315 TCGGTCAGGTCCTGCCAG 60.997 66.667 23.81 12.24 40.61 4.85
3805 4335 4.767255 CGGTCAGGTCCTGCCAGC 62.767 72.222 23.81 13.89 40.61 4.85
3806 4336 4.416738 GGTCAGGTCCTGCCAGCC 62.417 72.222 21.07 13.75 40.61 4.85
3808 4338 4.980592 TCAGGTCCTGCCAGCCCA 62.981 66.667 14.64 0.00 40.61 5.36
3809 4339 4.421515 CAGGTCCTGCCAGCCCAG 62.422 72.222 5.79 0.00 40.61 4.45
3838 4373 3.017314 CGCGGCTCGACGTGATAC 61.017 66.667 0.00 0.00 46.47 2.24
3869 4409 1.079336 GCTCTTTACTCCCGCCGTT 60.079 57.895 0.00 0.00 0.00 4.44
3968 4513 1.355066 GCTGCTCTGCTTCGTGTACC 61.355 60.000 0.00 0.00 0.00 3.34
3969 4514 0.737715 CTGCTCTGCTTCGTGTACCC 60.738 60.000 0.00 0.00 0.00 3.69
3970 4515 1.448013 GCTCTGCTTCGTGTACCCC 60.448 63.158 0.00 0.00 0.00 4.95
3971 4516 1.153823 CTCTGCTTCGTGTACCCCG 60.154 63.158 0.00 0.00 0.00 5.73
3993 4538 0.373716 CGCGCATTGTTTACTCCTCC 59.626 55.000 8.75 0.00 0.00 4.30
4055 4602 1.075970 ATCGGAGGAGGCACTAGCA 60.076 57.895 0.00 0.00 41.55 3.49
4059 4606 1.808133 CGGAGGAGGCACTAGCATTTC 60.808 57.143 0.00 0.00 41.55 2.17
4064 4612 5.474825 GAGGAGGCACTAGCATTTCTATAC 58.525 45.833 0.00 0.00 41.55 1.47
4091 4639 4.836125 TGTTTTTGAGCTGTGGATCTTC 57.164 40.909 0.00 0.00 0.00 2.87
4092 4640 4.464008 TGTTTTTGAGCTGTGGATCTTCT 58.536 39.130 0.00 0.00 0.00 2.85
4094 4642 6.061441 TGTTTTTGAGCTGTGGATCTTCTTA 58.939 36.000 0.00 0.00 0.00 2.10
4095 4643 6.017109 TGTTTTTGAGCTGTGGATCTTCTTAC 60.017 38.462 0.00 0.00 0.00 2.34
4096 4644 5.489792 TTTGAGCTGTGGATCTTCTTACT 57.510 39.130 0.00 0.00 0.00 2.24
4098 4646 6.605471 TTGAGCTGTGGATCTTCTTACTTA 57.395 37.500 0.00 0.00 0.00 2.24
4099 4647 6.798427 TGAGCTGTGGATCTTCTTACTTAT 57.202 37.500 0.00 0.00 0.00 1.73
4100 4648 7.898014 TGAGCTGTGGATCTTCTTACTTATA 57.102 36.000 0.00 0.00 0.00 0.98
4102 4650 7.561722 TGAGCTGTGGATCTTCTTACTTATACT 59.438 37.037 0.00 0.00 0.00 2.12
4103 4651 8.312669 AGCTGTGGATCTTCTTACTTATACTT 57.687 34.615 0.00 0.00 0.00 2.24
4104 4652 8.200792 AGCTGTGGATCTTCTTACTTATACTTG 58.799 37.037 0.00 0.00 0.00 3.16
4105 4653 7.439655 GCTGTGGATCTTCTTACTTATACTTGG 59.560 40.741 0.00 0.00 0.00 3.61
4106 4654 8.375493 TGTGGATCTTCTTACTTATACTTGGT 57.625 34.615 0.00 0.00 0.00 3.67
4107 4655 8.475639 TGTGGATCTTCTTACTTATACTTGGTC 58.524 37.037 0.00 0.00 0.00 4.02
4108 4656 8.697292 GTGGATCTTCTTACTTATACTTGGTCT 58.303 37.037 0.00 0.00 0.00 3.85
4109 4657 8.696374 TGGATCTTCTTACTTATACTTGGTCTG 58.304 37.037 0.00 0.00 0.00 3.51
4110 4658 8.915036 GGATCTTCTTACTTATACTTGGTCTGA 58.085 37.037 0.00 0.00 0.00 3.27
4111 4659 9.959749 GATCTTCTTACTTATACTTGGTCTGAG 57.040 37.037 0.00 0.00 0.00 3.35
4112 4660 9.702253 ATCTTCTTACTTATACTTGGTCTGAGA 57.298 33.333 0.00 0.00 0.00 3.27
4171 4719 2.037367 TCCCCTCCACGGTCTGAG 59.963 66.667 0.00 0.00 0.00 3.35
4176 4724 0.244994 CCTCCACGGTCTGAGACAAG 59.755 60.000 15.33 10.11 33.68 3.16
4181 4729 0.249911 ACGGTCTGAGACAAGGCAAC 60.250 55.000 15.33 0.00 33.68 4.17
4182 4730 0.249868 CGGTCTGAGACAAGGCAACA 60.250 55.000 15.33 0.00 34.22 3.33
4183 4731 1.517242 GGTCTGAGACAAGGCAACAG 58.483 55.000 15.33 0.00 34.22 3.16
4184 4732 1.202698 GGTCTGAGACAAGGCAACAGT 60.203 52.381 15.33 0.00 34.22 3.55
4185 4733 1.869767 GTCTGAGACAAGGCAACAGTG 59.130 52.381 7.90 0.00 33.09 3.66
4186 4734 1.202687 TCTGAGACAAGGCAACAGTGG 60.203 52.381 0.00 0.00 41.41 4.00
4194 4742 2.736531 GCAACAGTGGCCAAAGGG 59.263 61.111 7.24 0.00 37.18 3.95
4195 4743 1.832167 GCAACAGTGGCCAAAGGGA 60.832 57.895 7.24 0.00 35.59 4.20
4196 4744 1.809567 GCAACAGTGGCCAAAGGGAG 61.810 60.000 7.24 0.00 35.59 4.30
4202 4792 1.925455 TGGCCAAAGGGAGAGGAGG 60.925 63.158 0.61 0.00 35.59 4.30
4205 4795 1.994463 CCAAAGGGAGAGGAGGTGG 59.006 63.158 0.00 0.00 35.59 4.61
4217 4807 5.337975 GGAGAGGAGGTGGAAATATCTATGC 60.338 48.000 0.00 0.00 0.00 3.14
4222 4816 4.002906 GGTGGAAATATCTATGCACCGA 57.997 45.455 9.84 0.00 45.99 4.69
4245 4849 3.302344 GGCCAAAGCGCAGGGAAA 61.302 61.111 11.47 0.00 41.24 3.13
4262 4866 0.627986 AAAGAGGGGAGGAATGCTGG 59.372 55.000 0.00 0.00 0.00 4.85
4263 4867 0.253347 AAGAGGGGAGGAATGCTGGA 60.253 55.000 0.00 0.00 0.00 3.86
4264 4868 0.985490 AGAGGGGAGGAATGCTGGAC 60.985 60.000 0.00 0.00 0.00 4.02
4265 4869 1.229951 AGGGGAGGAATGCTGGACA 60.230 57.895 0.00 0.00 0.00 4.02
4361 4981 4.410743 GTGCGCCTTTCTGCAGCC 62.411 66.667 9.47 0.00 42.68 4.85
4391 5011 6.133356 TCATGGGGGATATCTTTGTTTAACC 58.867 40.000 2.05 0.00 0.00 2.85
4496 5139 1.111277 GCCTTTTGTGTCCCACTTGT 58.889 50.000 0.00 0.00 35.11 3.16
4497 5140 1.067060 GCCTTTTGTGTCCCACTTGTC 59.933 52.381 0.00 0.00 35.11 3.18
4498 5141 1.333619 CCTTTTGTGTCCCACTTGTCG 59.666 52.381 0.00 0.00 35.11 4.35
4499 5142 2.014128 CTTTTGTGTCCCACTTGTCGT 58.986 47.619 0.00 0.00 35.11 4.34
4500 5143 1.374560 TTTGTGTCCCACTTGTCGTG 58.625 50.000 0.00 0.00 43.41 4.35
4502 5145 0.461163 TGTGTCCCACTTGTCGTGTG 60.461 55.000 0.00 0.00 42.20 3.82
4503 5146 1.522806 TGTCCCACTTGTCGTGTGC 60.523 57.895 0.00 0.00 42.20 4.57
4505 5148 1.227527 TCCCACTTGTCGTGTGCTG 60.228 57.895 0.00 0.00 42.20 4.41
4507 5150 1.498865 CCCACTTGTCGTGTGCTGTC 61.499 60.000 0.00 0.00 42.20 3.51
4509 5152 2.237751 ACTTGTCGTGTGCTGTCGC 61.238 57.895 0.00 0.00 0.00 5.19
4516 5159 4.724602 TGTGCTGTCGCGGCTCTC 62.725 66.667 13.81 5.47 39.65 3.20
4559 5206 2.674796 AGTCTGTCTACCGGAAATGC 57.325 50.000 9.46 0.00 0.00 3.56
4621 5268 1.378911 TCATGATGGTGGCAGGCAC 60.379 57.895 18.87 18.87 0.00 5.01
4669 5316 0.248621 GAGTGCTGCTTGTTGCGTTT 60.249 50.000 0.00 0.00 46.63 3.60
4670 5317 0.173255 AGTGCTGCTTGTTGCGTTTT 59.827 45.000 0.00 0.00 46.63 2.43
5054 5701 2.125106 GGTGCCGAGGTTGCTAGG 60.125 66.667 0.00 0.00 0.00 3.02
5055 5702 2.656069 GGTGCCGAGGTTGCTAGGA 61.656 63.158 0.00 0.00 0.00 2.94
5056 5703 1.522569 GTGCCGAGGTTGCTAGGAT 59.477 57.895 0.00 0.00 0.00 3.24
5057 5704 0.750850 GTGCCGAGGTTGCTAGGATA 59.249 55.000 0.00 0.00 0.00 2.59
5058 5705 1.040646 TGCCGAGGTTGCTAGGATAG 58.959 55.000 0.00 0.00 43.09 2.08
5059 5706 0.318762 GCCGAGGTTGCTAGGATAGG 59.681 60.000 0.00 0.00 39.70 2.57
5060 5707 1.996798 CCGAGGTTGCTAGGATAGGA 58.003 55.000 0.00 0.00 39.70 2.94
5061 5708 2.530701 CCGAGGTTGCTAGGATAGGAT 58.469 52.381 0.00 0.00 39.37 3.24
5062 5709 3.698289 CCGAGGTTGCTAGGATAGGATA 58.302 50.000 0.00 0.00 39.37 2.59
5063 5710 4.282496 CCGAGGTTGCTAGGATAGGATAT 58.718 47.826 0.00 0.00 39.37 1.63
5064 5711 4.098654 CCGAGGTTGCTAGGATAGGATATG 59.901 50.000 0.00 0.00 39.37 1.78
5065 5712 4.707448 CGAGGTTGCTAGGATAGGATATGT 59.293 45.833 0.00 0.00 39.37 2.29
5066 5713 5.886474 CGAGGTTGCTAGGATAGGATATGTA 59.114 44.000 0.00 0.00 39.37 2.29
5067 5714 6.547880 CGAGGTTGCTAGGATAGGATATGTAT 59.452 42.308 0.00 0.00 39.37 2.29
5068 5715 7.255312 CGAGGTTGCTAGGATAGGATATGTATC 60.255 44.444 0.00 0.00 39.37 2.24
5083 5730 8.095452 GGATATGTATCCCAAATCCTATGAGT 57.905 38.462 7.68 0.00 45.20 3.41
5084 5731 9.213777 GGATATGTATCCCAAATCCTATGAGTA 57.786 37.037 7.68 0.00 45.20 2.59
5104 5751 9.995003 ATGAGTAGGAATAAGAAATGAGATGTC 57.005 33.333 0.00 0.00 0.00 3.06
5105 5752 8.981659 TGAGTAGGAATAAGAAATGAGATGTCA 58.018 33.333 0.00 0.00 37.02 3.58
5106 5753 9.995003 GAGTAGGAATAAGAAATGAGATGTCAT 57.005 33.333 0.00 0.00 46.01 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 103 2.671963 GGGTTGTGGCTTCCCGTC 60.672 66.667 0.00 0.00 0.00 4.79
80 112 2.065899 TCTTTTGGTCAGGGTTGTGG 57.934 50.000 0.00 0.00 0.00 4.17
85 117 4.387026 TGAATGATCTTTTGGTCAGGGT 57.613 40.909 0.00 0.00 0.00 4.34
86 118 4.708421 ACATGAATGATCTTTTGGTCAGGG 59.292 41.667 0.00 0.00 0.00 4.45
87 119 5.184479 ACACATGAATGATCTTTTGGTCAGG 59.816 40.000 0.00 0.00 0.00 3.86
88 120 6.263516 ACACATGAATGATCTTTTGGTCAG 57.736 37.500 0.00 0.00 0.00 3.51
89 121 6.448852 CAACACATGAATGATCTTTTGGTCA 58.551 36.000 0.00 0.00 0.00 4.02
91 123 5.011329 AGCAACACATGAATGATCTTTTGGT 59.989 36.000 0.00 0.00 0.00 3.67
92 124 5.475719 AGCAACACATGAATGATCTTTTGG 58.524 37.500 0.00 0.00 0.00 3.28
93 125 7.287950 CAAAGCAACACATGAATGATCTTTTG 58.712 34.615 0.00 0.00 0.00 2.44
94 126 6.073440 GCAAAGCAACACATGAATGATCTTTT 60.073 34.615 0.00 0.00 0.00 2.27
95 127 5.407387 GCAAAGCAACACATGAATGATCTTT 59.593 36.000 0.00 0.00 0.00 2.52
96 128 4.927425 GCAAAGCAACACATGAATGATCTT 59.073 37.500 0.00 0.00 0.00 2.40
97 129 4.219944 AGCAAAGCAACACATGAATGATCT 59.780 37.500 0.00 0.00 0.00 2.75
98 130 4.491676 AGCAAAGCAACACATGAATGATC 58.508 39.130 0.00 0.00 0.00 2.92
99 131 4.530710 AGCAAAGCAACACATGAATGAT 57.469 36.364 0.00 0.00 0.00 2.45
100 132 4.052608 CAAGCAAAGCAACACATGAATGA 58.947 39.130 0.00 0.00 0.00 2.57
101 133 3.363575 GCAAGCAAAGCAACACATGAATG 60.364 43.478 0.00 0.00 0.00 2.67
102 134 2.803956 GCAAGCAAAGCAACACATGAAT 59.196 40.909 0.00 0.00 0.00 2.57
103 135 2.203401 GCAAGCAAAGCAACACATGAA 58.797 42.857 0.00 0.00 0.00 2.57
105 137 0.863144 GGCAAGCAAAGCAACACATG 59.137 50.000 0.00 0.00 0.00 3.21
106 138 0.598158 CGGCAAGCAAAGCAACACAT 60.598 50.000 0.00 0.00 0.00 3.21
170 337 2.880879 CGTCTCATGACACCGGCG 60.881 66.667 0.00 0.00 43.06 6.46
172 339 2.184322 CCCGTCTCATGACACCGG 59.816 66.667 13.45 13.45 43.06 5.28
173 340 2.509336 GCCCGTCTCATGACACCG 60.509 66.667 0.00 0.00 43.06 4.94
197 364 4.873129 AGTCCAGCCATACGCGCG 62.873 66.667 30.96 30.96 44.76 6.86
201 368 0.248661 CAGTCGAGTCCAGCCATACG 60.249 60.000 0.00 0.00 0.00 3.06
211 378 0.526662 ATTCACCGGTCAGTCGAGTC 59.473 55.000 2.59 0.00 0.00 3.36
214 381 0.963225 TTCATTCACCGGTCAGTCGA 59.037 50.000 2.59 0.00 0.00 4.20
219 386 4.827835 TGGTTATTTTTCATTCACCGGTCA 59.172 37.500 2.59 0.00 0.00 4.02
221 388 4.320641 CGTGGTTATTTTTCATTCACCGGT 60.321 41.667 0.00 0.00 0.00 5.28
222 389 4.162812 CGTGGTTATTTTTCATTCACCGG 58.837 43.478 0.00 0.00 0.00 5.28
225 392 4.849383 CCGACGTGGTTATTTTTCATTCAC 59.151 41.667 0.00 0.00 0.00 3.18
226 393 4.614078 GCCGACGTGGTTATTTTTCATTCA 60.614 41.667 0.00 0.00 41.21 2.57
227 394 3.849708 GCCGACGTGGTTATTTTTCATTC 59.150 43.478 0.00 0.00 41.21 2.67
229 396 2.162809 GGCCGACGTGGTTATTTTTCAT 59.837 45.455 0.00 0.00 41.21 2.57
256 472 1.153706 GCTGGCAGCGATGCATTTT 60.154 52.632 28.61 0.00 36.33 1.82
408 629 2.866085 CTTCTGCCCCGCTCTCCTTG 62.866 65.000 0.00 0.00 0.00 3.61
410 631 3.080121 CTTCTGCCCCGCTCTCCT 61.080 66.667 0.00 0.00 0.00 3.69
415 637 4.767255 CGCTTCTTCTGCCCCGCT 62.767 66.667 0.00 0.00 0.00 5.52
426 648 0.818296 ACGGCTCTATGTTCGCTTCT 59.182 50.000 0.00 0.00 0.00 2.85
488 710 2.846665 AGTGGGTTTTATGGATGGGG 57.153 50.000 0.00 0.00 0.00 4.96
636 859 2.332654 GGGTTACGTGGCTTGCCAG 61.333 63.158 15.31 11.33 0.00 4.85
694 917 4.910585 GAGGTGGCGGGTATGCGG 62.911 72.222 0.00 0.00 35.06 5.69
734 957 1.686587 GGATTTATGGCGGGGGAAAAG 59.313 52.381 0.00 0.00 0.00 2.27
735 958 1.689892 GGGATTTATGGCGGGGGAAAA 60.690 52.381 0.00 0.00 0.00 2.29
736 959 0.105913 GGGATTTATGGCGGGGGAAA 60.106 55.000 0.00 0.00 0.00 3.13
746 969 0.537371 GGCGGGGAGTGGGATTTATG 60.537 60.000 0.00 0.00 0.00 1.90
754 977 4.426313 GGAAAGGGCGGGGAGTGG 62.426 72.222 0.00 0.00 0.00 4.00
786 1009 2.997897 GGCGAGGTGGTGGAGAGT 60.998 66.667 0.00 0.00 0.00 3.24
787 1010 3.775654 GGGCGAGGTGGTGGAGAG 61.776 72.222 0.00 0.00 0.00 3.20
808 1031 2.805353 CAGAGTTCGTCACGGCCG 60.805 66.667 26.86 26.86 0.00 6.13
809 1032 3.112709 GCAGAGTTCGTCACGGCC 61.113 66.667 0.00 0.00 0.00 6.13
818 1041 2.507324 GGCGACGAGGCAGAGTTC 60.507 66.667 0.00 0.00 45.92 3.01
841 1064 4.516135 CATGCTCTGCTGCGTGCG 62.516 66.667 11.57 0.00 46.63 5.34
842 1065 4.175489 CCATGCTCTGCTGCGTGC 62.175 66.667 11.67 10.14 45.61 5.34
843 1066 4.175489 GCCATGCTCTGCTGCGTG 62.175 66.667 10.62 10.62 46.28 5.34
844 1067 4.405671 AGCCATGCTCTGCTGCGT 62.406 61.111 0.00 0.00 36.23 5.24
930 1227 0.901827 TAGAGCTTTCATGGTCGGCA 59.098 50.000 0.00 0.00 39.21 5.69
937 1234 3.614616 GTCGACCAAGTAGAGCTTTCATG 59.385 47.826 3.51 0.00 34.69 3.07
939 1236 2.626266 TGTCGACCAAGTAGAGCTTTCA 59.374 45.455 14.12 0.00 34.69 2.69
941 1238 3.746045 TTGTCGACCAAGTAGAGCTTT 57.254 42.857 14.12 0.00 34.69 3.51
942 1239 3.589988 CATTGTCGACCAAGTAGAGCTT 58.410 45.455 14.12 0.00 36.25 3.74
943 1240 2.675317 GCATTGTCGACCAAGTAGAGCT 60.675 50.000 14.12 0.00 36.25 4.09
944 1241 1.661112 GCATTGTCGACCAAGTAGAGC 59.339 52.381 14.12 2.30 36.25 4.09
945 1242 2.926200 CAGCATTGTCGACCAAGTAGAG 59.074 50.000 14.12 0.00 36.25 2.43
946 1243 2.353704 CCAGCATTGTCGACCAAGTAGA 60.354 50.000 14.12 0.00 36.25 2.59
948 1245 1.346395 ACCAGCATTGTCGACCAAGTA 59.654 47.619 14.12 0.00 36.25 2.24
949 1246 0.108585 ACCAGCATTGTCGACCAAGT 59.891 50.000 14.12 0.00 36.25 3.16
950 1247 0.518636 CACCAGCATTGTCGACCAAG 59.481 55.000 14.12 0.00 36.25 3.61
951 1248 0.179032 ACACCAGCATTGTCGACCAA 60.179 50.000 14.12 7.96 37.49 3.67
965 1270 3.636300 AGTAAGCAAAGCAAATCACACCA 59.364 39.130 0.00 0.00 0.00 4.17
968 1273 4.554526 CGTCAGTAAGCAAAGCAAATCACA 60.555 41.667 0.00 0.00 0.00 3.58
972 1277 2.884639 ACCGTCAGTAAGCAAAGCAAAT 59.115 40.909 0.00 0.00 0.00 2.32
976 1281 1.508632 TCACCGTCAGTAAGCAAAGC 58.491 50.000 0.00 0.00 0.00 3.51
996 1301 1.687660 TCTGCAACCAAACACATGCAT 59.312 42.857 0.00 0.00 46.59 3.96
997 1302 1.109609 TCTGCAACCAAACACATGCA 58.890 45.000 0.00 0.00 45.75 3.96
998 1303 1.490621 GTCTGCAACCAAACACATGC 58.509 50.000 0.00 0.00 39.22 4.06
999 1304 1.757574 CGTCTGCAACCAAACACATG 58.242 50.000 0.00 0.00 0.00 3.21
1347 1656 1.745115 CACGTTGATCATGGCCGGT 60.745 57.895 1.90 0.00 0.00 5.28
1374 1683 1.601419 CCATGTTGAGCCTGGCCAAG 61.601 60.000 16.57 0.23 0.00 3.61
1375 1684 1.607178 CCATGTTGAGCCTGGCCAA 60.607 57.895 16.57 16.00 0.00 4.52
1881 2190 1.513586 CGCGAAGAGGTACACGTCC 60.514 63.158 0.00 0.00 0.00 4.79
1941 2250 1.622232 GGTAGAACACGCCGTAGTTC 58.378 55.000 18.42 18.42 43.33 3.01
2037 2352 4.263572 CCGTTGTCCTGCCACCCA 62.264 66.667 0.00 0.00 0.00 4.51
2355 2670 2.883828 CGGGGACTCACTTGGTGCT 61.884 63.158 0.00 0.00 32.98 4.40
2358 2673 1.752833 GAACGGGGACTCACTTGGT 59.247 57.895 0.00 0.00 0.00 3.67
2382 2697 3.611530 GCAGGCAAGAAACGAGCAAATTA 60.612 43.478 0.00 0.00 0.00 1.40
2386 2701 1.100463 TGCAGGCAAGAAACGAGCAA 61.100 50.000 0.00 0.00 0.00 3.91
2419 2734 0.370273 CATTTGCACGAGCGGTACTC 59.630 55.000 0.00 0.00 46.23 2.59
2422 2737 1.352114 GTACATTTGCACGAGCGGTA 58.648 50.000 0.00 0.00 46.23 4.02
2434 2749 4.155280 GCAAGTAATGGACGTGGTACATTT 59.845 41.667 11.15 0.00 43.71 2.32
2463 2778 8.303876 TGAAATTAAGGGAGTACATTTTGCTTC 58.696 33.333 0.00 0.00 0.00 3.86
2466 2781 8.825667 TTTGAAATTAAGGGAGTACATTTTGC 57.174 30.769 0.00 0.00 0.00 3.68
2475 2790 8.621286 CGCACTATATTTTGAAATTAAGGGAGT 58.379 33.333 0.00 0.00 0.00 3.85
2476 2791 7.591426 GCGCACTATATTTTGAAATTAAGGGAG 59.409 37.037 0.30 0.00 0.00 4.30
2477 2792 7.422399 GCGCACTATATTTTGAAATTAAGGGA 58.578 34.615 0.30 0.00 0.00 4.20
2478 2793 6.640907 GGCGCACTATATTTTGAAATTAAGGG 59.359 38.462 10.83 0.00 0.00 3.95
2479 2794 6.640907 GGGCGCACTATATTTTGAAATTAAGG 59.359 38.462 10.83 0.00 0.00 2.69
2480 2795 7.167468 GTGGGCGCACTATATTTTGAAATTAAG 59.833 37.037 25.28 0.00 0.00 1.85
2481 2796 6.975772 GTGGGCGCACTATATTTTGAAATTAA 59.024 34.615 25.28 0.00 0.00 1.40
2482 2797 6.500041 GTGGGCGCACTATATTTTGAAATTA 58.500 36.000 25.28 0.00 0.00 1.40
2483 2798 5.348164 GTGGGCGCACTATATTTTGAAATT 58.652 37.500 25.28 0.00 0.00 1.82
2484 2799 4.497340 CGTGGGCGCACTATATTTTGAAAT 60.497 41.667 28.52 0.00 0.00 2.17
2485 2800 3.181505 CGTGGGCGCACTATATTTTGAAA 60.182 43.478 28.52 0.00 0.00 2.69
2486 2801 2.353269 CGTGGGCGCACTATATTTTGAA 59.647 45.455 28.52 0.00 0.00 2.69
2487 2802 1.937223 CGTGGGCGCACTATATTTTGA 59.063 47.619 28.52 0.00 0.00 2.69
2488 2803 2.383298 CGTGGGCGCACTATATTTTG 57.617 50.000 28.52 9.25 0.00 2.44
2500 2815 3.737172 CCTTGGAAAGCGTGGGCG 61.737 66.667 0.00 0.00 44.44 6.13
2501 2816 2.597510 ACCTTGGAAAGCGTGGGC 60.598 61.111 0.00 0.00 44.44 5.36
2502 2817 0.323629 TAGACCTTGGAAAGCGTGGG 59.676 55.000 0.00 0.00 44.44 4.61
2503 2818 2.178912 TTAGACCTTGGAAAGCGTGG 57.821 50.000 0.00 0.00 44.44 4.94
2504 2819 4.766404 AAATTAGACCTTGGAAAGCGTG 57.234 40.909 0.00 0.00 44.44 5.34
2505 2820 6.294342 GGTTAAAATTAGACCTTGGAAAGCGT 60.294 38.462 0.00 0.00 44.44 5.07
2506 2821 6.090783 GGTTAAAATTAGACCTTGGAAAGCG 58.909 40.000 0.00 0.00 44.44 4.68
2507 2822 6.988522 TGGTTAAAATTAGACCTTGGAAAGC 58.011 36.000 0.00 0.00 44.44 3.51
2525 2840 9.984190 GGTCTTGTTGGTTAAATTTATGGTTAA 57.016 29.630 0.00 0.00 0.00 2.01
2526 2841 9.144298 TGGTCTTGTTGGTTAAATTTATGGTTA 57.856 29.630 0.00 0.00 0.00 2.85
2527 2842 8.024145 TGGTCTTGTTGGTTAAATTTATGGTT 57.976 30.769 0.00 0.00 0.00 3.67
2528 2843 7.604657 TGGTCTTGTTGGTTAAATTTATGGT 57.395 32.000 0.00 0.00 0.00 3.55
2529 2844 7.928706 TGTTGGTCTTGTTGGTTAAATTTATGG 59.071 33.333 0.00 0.00 0.00 2.74
2530 2845 8.879342 TGTTGGTCTTGTTGGTTAAATTTATG 57.121 30.769 0.00 0.00 0.00 1.90
2531 2846 8.700973 ACTGTTGGTCTTGTTGGTTAAATTTAT 58.299 29.630 0.00 0.00 0.00 1.40
2532 2847 7.976734 CACTGTTGGTCTTGTTGGTTAAATTTA 59.023 33.333 0.00 0.00 0.00 1.40
2533 2848 6.816140 CACTGTTGGTCTTGTTGGTTAAATTT 59.184 34.615 0.00 0.00 0.00 1.82
2534 2849 6.337356 CACTGTTGGTCTTGTTGGTTAAATT 58.663 36.000 0.00 0.00 0.00 1.82
2535 2850 5.163457 CCACTGTTGGTCTTGTTGGTTAAAT 60.163 40.000 0.00 0.00 38.23 1.40
2536 2851 4.158764 CCACTGTTGGTCTTGTTGGTTAAA 59.841 41.667 0.00 0.00 38.23 1.52
2537 2852 3.697045 CCACTGTTGGTCTTGTTGGTTAA 59.303 43.478 0.00 0.00 38.23 2.01
2538 2853 3.283751 CCACTGTTGGTCTTGTTGGTTA 58.716 45.455 0.00 0.00 38.23 2.85
2539 2854 2.099405 CCACTGTTGGTCTTGTTGGTT 58.901 47.619 0.00 0.00 38.23 3.67
2540 2855 1.762708 CCACTGTTGGTCTTGTTGGT 58.237 50.000 0.00 0.00 38.23 3.67
2541 2856 0.385390 GCCACTGTTGGTCTTGTTGG 59.615 55.000 0.00 0.00 45.98 3.77
2542 2857 0.029300 CGCCACTGTTGGTCTTGTTG 59.971 55.000 0.00 0.00 45.98 3.33
2543 2858 1.101049 CCGCCACTGTTGGTCTTGTT 61.101 55.000 0.00 0.00 45.98 2.83
2544 2859 1.525995 CCGCCACTGTTGGTCTTGT 60.526 57.895 0.00 0.00 45.98 3.16
2545 2860 2.260869 CCCGCCACTGTTGGTCTTG 61.261 63.158 0.00 0.00 45.98 3.02
2546 2861 2.113139 CCCGCCACTGTTGGTCTT 59.887 61.111 0.00 0.00 45.98 3.01
2547 2862 2.847234 TCCCGCCACTGTTGGTCT 60.847 61.111 0.00 0.00 45.98 3.85
2548 2863 2.358737 CTCCCGCCACTGTTGGTC 60.359 66.667 0.00 0.00 45.98 4.02
2549 2864 1.990160 TTTCTCCCGCCACTGTTGGT 61.990 55.000 0.00 0.00 45.98 3.67
2551 2866 1.028905 TTTTTCTCCCGCCACTGTTG 58.971 50.000 0.00 0.00 0.00 3.33
2552 2867 3.505835 TTTTTCTCCCGCCACTGTT 57.494 47.368 0.00 0.00 0.00 3.16
2605 2920 9.801873 GGCAGAAGCAAAAATTATATTAGTGAA 57.198 29.630 0.00 0.00 44.61 3.18
2606 2921 8.965819 TGGCAGAAGCAAAAATTATATTAGTGA 58.034 29.630 0.00 0.00 44.61 3.41
2607 2922 9.023967 GTGGCAGAAGCAAAAATTATATTAGTG 57.976 33.333 0.00 0.00 44.61 2.74
2608 2923 8.748412 TGTGGCAGAAGCAAAAATTATATTAGT 58.252 29.630 0.00 0.00 44.61 2.24
2609 2924 9.585099 TTGTGGCAGAAGCAAAAATTATATTAG 57.415 29.630 0.00 0.00 44.61 1.73
2611 2926 9.101655 GATTGTGGCAGAAGCAAAAATTATATT 57.898 29.630 7.83 0.00 44.61 1.28
2612 2927 7.436080 CGATTGTGGCAGAAGCAAAAATTATAT 59.564 33.333 13.20 0.00 44.61 0.86
2613 2928 6.751425 CGATTGTGGCAGAAGCAAAAATTATA 59.249 34.615 13.20 0.00 44.61 0.98
2614 2929 5.577945 CGATTGTGGCAGAAGCAAAAATTAT 59.422 36.000 13.20 0.00 44.61 1.28
2615 2930 4.922692 CGATTGTGGCAGAAGCAAAAATTA 59.077 37.500 13.20 0.00 44.61 1.40
2616 2931 3.742369 CGATTGTGGCAGAAGCAAAAATT 59.258 39.130 13.20 0.00 44.61 1.82
2617 2932 3.319755 CGATTGTGGCAGAAGCAAAAAT 58.680 40.909 13.20 0.00 44.61 1.82
2618 2933 2.545532 CCGATTGTGGCAGAAGCAAAAA 60.546 45.455 13.20 0.00 44.61 1.94
2619 2934 1.000385 CCGATTGTGGCAGAAGCAAAA 60.000 47.619 13.20 0.00 44.61 2.44
2620 2935 0.597568 CCGATTGTGGCAGAAGCAAA 59.402 50.000 13.20 0.00 44.61 3.68
2621 2936 0.537143 ACCGATTGTGGCAGAAGCAA 60.537 50.000 13.20 2.03 44.61 3.91
2622 2937 0.955428 GACCGATTGTGGCAGAAGCA 60.955 55.000 13.20 0.00 44.61 3.91
2623 2938 0.674895 AGACCGATTGTGGCAGAAGC 60.675 55.000 2.09 2.09 41.10 3.86
2624 2939 1.813513 AAGACCGATTGTGGCAGAAG 58.186 50.000 2.75 0.00 0.00 2.85
2625 2940 2.270352 AAAGACCGATTGTGGCAGAA 57.730 45.000 0.00 0.00 0.00 3.02
2626 2941 2.270352 AAAAGACCGATTGTGGCAGA 57.730 45.000 0.00 0.00 0.00 4.26
2627 2942 4.497473 TTTAAAAGACCGATTGTGGCAG 57.503 40.909 0.00 0.00 0.00 4.85
2628 2943 5.461032 AATTTAAAAGACCGATTGTGGCA 57.539 34.783 0.00 0.00 0.00 4.92
2629 2944 7.062956 CCTTAAATTTAAAAGACCGATTGTGGC 59.937 37.037 11.62 0.00 0.00 5.01
2630 2945 8.085909 ACCTTAAATTTAAAAGACCGATTGTGG 58.914 33.333 11.62 7.15 0.00 4.17
2631 2946 9.471084 AACCTTAAATTTAAAAGACCGATTGTG 57.529 29.630 11.62 0.00 0.00 3.33
2645 2960 9.453325 CGTGCTTCAACTTTAACCTTAAATTTA 57.547 29.630 0.00 0.00 32.69 1.40
2646 2961 7.436970 CCGTGCTTCAACTTTAACCTTAAATTT 59.563 33.333 0.00 0.00 32.69 1.82
2647 2962 6.921307 CCGTGCTTCAACTTTAACCTTAAATT 59.079 34.615 0.00 0.00 32.69 1.82
2648 2963 6.443792 CCGTGCTTCAACTTTAACCTTAAAT 58.556 36.000 0.00 0.00 32.69 1.40
2649 2964 5.221087 CCCGTGCTTCAACTTTAACCTTAAA 60.221 40.000 0.00 0.00 0.00 1.52
2650 2965 4.276431 CCCGTGCTTCAACTTTAACCTTAA 59.724 41.667 0.00 0.00 0.00 1.85
2651 2966 3.816523 CCCGTGCTTCAACTTTAACCTTA 59.183 43.478 0.00 0.00 0.00 2.69
2652 2967 2.621526 CCCGTGCTTCAACTTTAACCTT 59.378 45.455 0.00 0.00 0.00 3.50
2653 2968 2.158726 TCCCGTGCTTCAACTTTAACCT 60.159 45.455 0.00 0.00 0.00 3.50
2654 2969 2.223745 TCCCGTGCTTCAACTTTAACC 58.776 47.619 0.00 0.00 0.00 2.85
2655 2970 4.933400 TCTATCCCGTGCTTCAACTTTAAC 59.067 41.667 0.00 0.00 0.00 2.01
2656 2971 5.155278 TCTATCCCGTGCTTCAACTTTAA 57.845 39.130 0.00 0.00 0.00 1.52
2657 2972 4.382685 CCTCTATCCCGTGCTTCAACTTTA 60.383 45.833 0.00 0.00 0.00 1.85
2658 2973 3.600388 CTCTATCCCGTGCTTCAACTTT 58.400 45.455 0.00 0.00 0.00 2.66
2659 2974 2.093447 CCTCTATCCCGTGCTTCAACTT 60.093 50.000 0.00 0.00 0.00 2.66
2660 2975 1.482593 CCTCTATCCCGTGCTTCAACT 59.517 52.381 0.00 0.00 0.00 3.16
2661 2976 1.480954 TCCTCTATCCCGTGCTTCAAC 59.519 52.381 0.00 0.00 0.00 3.18
2662 2977 1.860641 TCCTCTATCCCGTGCTTCAA 58.139 50.000 0.00 0.00 0.00 2.69
2663 2978 1.757118 CTTCCTCTATCCCGTGCTTCA 59.243 52.381 0.00 0.00 0.00 3.02
2664 2979 1.539280 GCTTCCTCTATCCCGTGCTTC 60.539 57.143 0.00 0.00 0.00 3.86
2665 2980 0.466124 GCTTCCTCTATCCCGTGCTT 59.534 55.000 0.00 0.00 0.00 3.91
2666 2981 0.687757 TGCTTCCTCTATCCCGTGCT 60.688 55.000 0.00 0.00 0.00 4.40
2667 2982 0.530870 GTGCTTCCTCTATCCCGTGC 60.531 60.000 0.00 0.00 0.00 5.34
2668 2983 1.115467 AGTGCTTCCTCTATCCCGTG 58.885 55.000 0.00 0.00 0.00 4.94
2669 2984 2.308690 GTAGTGCTTCCTCTATCCCGT 58.691 52.381 0.00 0.00 0.00 5.28
2670 2985 2.307768 TGTAGTGCTTCCTCTATCCCG 58.692 52.381 0.00 0.00 0.00 5.14
2671 2986 4.965200 AATGTAGTGCTTCCTCTATCCC 57.035 45.455 0.00 0.00 0.00 3.85
2672 2987 5.567823 GCCTAATGTAGTGCTTCCTCTATCC 60.568 48.000 0.00 0.00 0.00 2.59
2673 2988 5.245075 AGCCTAATGTAGTGCTTCCTCTATC 59.755 44.000 0.00 0.00 31.26 2.08
2674 2989 5.151454 AGCCTAATGTAGTGCTTCCTCTAT 58.849 41.667 0.00 0.00 31.26 1.98
2675 2990 4.547671 AGCCTAATGTAGTGCTTCCTCTA 58.452 43.478 0.00 0.00 31.26 2.43
2676 2991 3.379452 AGCCTAATGTAGTGCTTCCTCT 58.621 45.455 0.00 0.00 31.26 3.69
2677 2992 3.828875 AGCCTAATGTAGTGCTTCCTC 57.171 47.619 0.00 0.00 31.26 3.71
2678 2993 4.290942 ACTAGCCTAATGTAGTGCTTCCT 58.709 43.478 0.00 0.00 35.16 3.36
2679 2994 4.099573 TGACTAGCCTAATGTAGTGCTTCC 59.900 45.833 0.00 0.00 35.16 3.46
2680 2995 5.263968 TGACTAGCCTAATGTAGTGCTTC 57.736 43.478 0.00 0.00 35.16 3.86
2681 2996 5.878406 ATGACTAGCCTAATGTAGTGCTT 57.122 39.130 0.00 0.00 35.16 3.91
2682 2997 6.015856 CACTATGACTAGCCTAATGTAGTGCT 60.016 42.308 0.00 0.00 36.64 4.40
2683 2998 6.153067 CACTATGACTAGCCTAATGTAGTGC 58.847 44.000 0.00 0.00 33.74 4.40
2684 2999 6.294787 CCCACTATGACTAGCCTAATGTAGTG 60.295 46.154 0.00 0.00 38.18 2.74
2685 3000 5.775701 CCCACTATGACTAGCCTAATGTAGT 59.224 44.000 0.00 0.00 31.97 2.73
2686 3001 6.010850 TCCCACTATGACTAGCCTAATGTAG 58.989 44.000 0.00 0.00 0.00 2.74
2687 3002 5.960704 TCCCACTATGACTAGCCTAATGTA 58.039 41.667 0.00 0.00 0.00 2.29
2688 3003 4.816126 TCCCACTATGACTAGCCTAATGT 58.184 43.478 0.00 0.00 0.00 2.71
2689 3004 4.835615 ACTCCCACTATGACTAGCCTAATG 59.164 45.833 0.00 0.00 0.00 1.90
2690 3005 5.081315 ACTCCCACTATGACTAGCCTAAT 57.919 43.478 0.00 0.00 0.00 1.73
2691 3006 4.537945 ACTCCCACTATGACTAGCCTAA 57.462 45.455 0.00 0.00 0.00 2.69
2692 3007 5.133999 AGTTACTCCCACTATGACTAGCCTA 59.866 44.000 0.00 0.00 0.00 3.93
2703 3018 6.893554 TGTTATCAGCTAAGTTACTCCCACTA 59.106 38.462 0.00 0.00 0.00 2.74
2731 3046 8.899776 CATAAGCAGAATTTTCTCGAAATATGC 58.100 33.333 9.03 9.03 43.74 3.14
2733 3048 9.941664 CACATAAGCAGAATTTTCTCGAAATAT 57.058 29.630 0.00 0.00 36.96 1.28
2734 3049 8.397906 CCACATAAGCAGAATTTTCTCGAAATA 58.602 33.333 0.00 0.00 36.96 1.40
2736 3051 6.611381 CCACATAAGCAGAATTTTCTCGAAA 58.389 36.000 0.00 0.00 34.74 3.46
2740 3055 5.314923 TGCCACATAAGCAGAATTTTCTC 57.685 39.130 0.00 0.00 34.74 2.87
2748 3063 8.911965 TCATTAATTATTTGCCACATAAGCAGA 58.088 29.630 0.00 0.00 42.17 4.26
2749 3064 9.188588 CTCATTAATTATTTGCCACATAAGCAG 57.811 33.333 0.00 0.00 42.17 4.24
2777 3092 9.155975 CATTGTGACCAGCCTTATATTACTATC 57.844 37.037 0.00 0.00 0.00 2.08
2778 3093 8.103305 CCATTGTGACCAGCCTTATATTACTAT 58.897 37.037 0.00 0.00 0.00 2.12
2780 3095 6.299141 CCATTGTGACCAGCCTTATATTACT 58.701 40.000 0.00 0.00 0.00 2.24
2785 3100 2.174639 CCCCATTGTGACCAGCCTTATA 59.825 50.000 0.00 0.00 0.00 0.98
2801 3116 2.972153 ACTCCTAAGTTCCTCCCCAT 57.028 50.000 0.00 0.00 28.74 4.00
2860 3175 8.270744 ACAAGCACCTCTCTCTTCATTAAATAT 58.729 33.333 0.00 0.00 0.00 1.28
2955 3272 5.733676 ACATCTATGTAGTGTCATGCAACA 58.266 37.500 0.00 0.00 39.68 3.33
3010 3327 9.032420 GCTAGTAACATACACAATTTCCTAGAC 57.968 37.037 0.00 0.00 0.00 2.59
3020 3337 9.938280 AAGAACATAAGCTAGTAACATACACAA 57.062 29.630 0.00 0.00 0.00 3.33
3027 3344 5.183228 GGGCAAGAACATAAGCTAGTAACA 58.817 41.667 0.00 0.00 0.00 2.41
3084 3401 4.130118 ACTCATCTTGTCTTGAAAAGCGT 58.870 39.130 0.00 0.00 45.70 5.07
3091 3408 4.142578 GCTCGTAGACTCATCTTGTCTTGA 60.143 45.833 1.67 1.26 41.45 3.02
3193 3510 6.752815 GGAAGTAACTTAGACTACTGTCATGC 59.247 42.308 0.00 0.00 45.20 4.06
3201 3518 8.404765 GTCATAGTGGGAAGTAACTTAGACTAC 58.595 40.741 0.00 0.00 31.58 2.73
3216 3533 2.561209 TAAGGCTGGTCATAGTGGGA 57.439 50.000 0.00 0.00 0.00 4.37
3234 3551 5.158141 AGCATCTACTTCCTCCATTCCATA 58.842 41.667 0.00 0.00 0.00 2.74
3235 3552 3.979347 AGCATCTACTTCCTCCATTCCAT 59.021 43.478 0.00 0.00 0.00 3.41
3236 3553 3.387962 AGCATCTACTTCCTCCATTCCA 58.612 45.455 0.00 0.00 0.00 3.53
3237 3554 4.591072 ACTAGCATCTACTTCCTCCATTCC 59.409 45.833 0.00 0.00 0.00 3.01
3238 3555 5.799827 ACTAGCATCTACTTCCTCCATTC 57.200 43.478 0.00 0.00 0.00 2.67
3239 3556 5.686124 GCAACTAGCATCTACTTCCTCCATT 60.686 44.000 0.00 0.00 44.79 3.16
3240 3557 4.202305 GCAACTAGCATCTACTTCCTCCAT 60.202 45.833 0.00 0.00 44.79 3.41
3241 3558 3.133003 GCAACTAGCATCTACTTCCTCCA 59.867 47.826 0.00 0.00 44.79 3.86
3242 3559 3.723260 GCAACTAGCATCTACTTCCTCC 58.277 50.000 0.00 0.00 44.79 4.30
3255 3572 1.747355 TCACGGTACCTAGCAACTAGC 59.253 52.381 10.90 0.00 46.19 3.42
3256 3573 3.015327 ACTCACGGTACCTAGCAACTAG 58.985 50.000 10.90 0.00 34.16 2.57
3271 3588 1.669999 CCGGGTTAGGGGTACTCACG 61.670 65.000 0.00 0.00 0.00 4.35
3272 3589 2.205691 CCGGGTTAGGGGTACTCAC 58.794 63.158 0.00 0.00 0.00 3.51
3273 3590 4.792066 CCGGGTTAGGGGTACTCA 57.208 61.111 0.00 0.00 0.00 3.41
3290 3607 3.646736 ACCTAGGACCTACATTTTGCC 57.353 47.619 17.98 0.00 0.00 4.52
3353 3677 5.049129 GTGATAACCCATTCTCTGCATTAGC 60.049 44.000 0.00 0.00 42.57 3.09
3354 3678 6.057533 TGTGATAACCCATTCTCTGCATTAG 58.942 40.000 0.00 0.00 0.00 1.73
3430 3867 8.836413 CGATTTTCCTACCAAATTATTGCTAGA 58.164 33.333 0.00 0.00 35.10 2.43
3431 3868 8.076178 CCGATTTTCCTACCAAATTATTGCTAG 58.924 37.037 0.00 0.00 35.10 3.42
3433 3870 6.379988 ACCGATTTTCCTACCAAATTATTGCT 59.620 34.615 0.00 0.00 35.10 3.91
3434 3871 6.475402 CACCGATTTTCCTACCAAATTATTGC 59.525 38.462 0.00 0.00 35.10 3.56
3436 3873 7.394923 TGTCACCGATTTTCCTACCAAATTATT 59.605 33.333 0.00 0.00 0.00 1.40
3437 3874 6.887545 TGTCACCGATTTTCCTACCAAATTAT 59.112 34.615 0.00 0.00 0.00 1.28
3438 3875 6.239396 TGTCACCGATTTTCCTACCAAATTA 58.761 36.000 0.00 0.00 0.00 1.40
3439 3876 5.074115 TGTCACCGATTTTCCTACCAAATT 58.926 37.500 0.00 0.00 0.00 1.82
3441 3878 4.069304 CTGTCACCGATTTTCCTACCAAA 58.931 43.478 0.00 0.00 0.00 3.28
3442 3879 3.071892 ACTGTCACCGATTTTCCTACCAA 59.928 43.478 0.00 0.00 0.00 3.67
3443 3880 2.635915 ACTGTCACCGATTTTCCTACCA 59.364 45.455 0.00 0.00 0.00 3.25
3444 3881 3.329929 ACTGTCACCGATTTTCCTACC 57.670 47.619 0.00 0.00 0.00 3.18
3445 3882 4.514066 ACAAACTGTCACCGATTTTCCTAC 59.486 41.667 0.00 0.00 0.00 3.18
3446 3883 4.513692 CACAAACTGTCACCGATTTTCCTA 59.486 41.667 0.00 0.00 0.00 2.94
3448 3885 3.066203 ACACAAACTGTCACCGATTTTCC 59.934 43.478 0.00 0.00 0.00 3.13
3449 3886 4.035017 CACACAAACTGTCACCGATTTTC 58.965 43.478 0.00 0.00 0.00 2.29
3451 3888 2.357637 CCACACAAACTGTCACCGATTT 59.642 45.455 0.00 0.00 0.00 2.17
3452 3889 1.946768 CCACACAAACTGTCACCGATT 59.053 47.619 0.00 0.00 0.00 3.34
3461 3904 4.577152 TGGCTCCCACACAAACTG 57.423 55.556 0.00 0.00 0.00 3.16
3475 3918 0.804933 CTCGCTTTAGGTACCGTGGC 60.805 60.000 6.18 8.96 0.00 5.01
3514 3960 2.289002 CCATCTCTCTGTAAATTGCCGC 59.711 50.000 0.00 0.00 0.00 6.53
3540 3991 2.196997 ATTTGAGCCGTGCCTGCCTA 62.197 55.000 0.00 0.00 0.00 3.93
3553 4004 6.195983 GCAACTTTCGCTTGATATGATTTGAG 59.804 38.462 0.00 0.00 0.00 3.02
3586 4037 1.065854 TGTGTGGGCCAAAACAAAAGG 60.066 47.619 18.29 0.00 0.00 3.11
3587 4038 2.393271 TGTGTGGGCCAAAACAAAAG 57.607 45.000 18.29 0.00 0.00 2.27
3624 4112 1.302033 CTGCAGCTTCCCTTGTCGT 60.302 57.895 0.00 0.00 0.00 4.34
3636 4124 2.981909 TGAAGGCACAGCTGCAGC 60.982 61.111 31.53 31.53 46.28 5.25
3646 4134 2.974148 CACAGCAGCGTGAAGGCA 60.974 61.111 10.72 0.00 39.34 4.75
3652 4140 1.794785 CGCAAATCACAGCAGCGTG 60.795 57.895 10.13 10.13 43.08 5.34
3655 4143 1.154150 GGTCGCAAATCACAGCAGC 60.154 57.895 0.00 0.00 0.00 5.25
3656 4144 1.236616 TGGGTCGCAAATCACAGCAG 61.237 55.000 0.00 0.00 0.00 4.24
3657 4145 0.821301 TTGGGTCGCAAATCACAGCA 60.821 50.000 0.00 0.00 0.00 4.41
3669 4157 1.452110 TGATGTGCAGATTTGGGTCG 58.548 50.000 0.00 0.00 0.00 4.79
3685 4173 0.748450 CCAATGCGGGCTTGAATGAT 59.252 50.000 0.00 0.00 0.00 2.45
3686 4174 0.323269 TCCAATGCGGGCTTGAATGA 60.323 50.000 0.00 0.00 34.36 2.57
3732 4243 4.873810 ACTGGCAACTGCACGGCA 62.874 61.111 3.76 2.79 44.36 5.69
3733 4244 4.030452 GACTGGCAACTGCACGGC 62.030 66.667 3.76 0.00 44.36 5.68
3746 4276 3.366476 CGTAAACTCTGAGACCCTGACTG 60.366 52.174 12.44 0.00 0.00 3.51
3838 4373 3.898627 AAGAGCACAGGACGCGTCG 62.899 63.158 30.99 21.22 0.00 5.12
3869 4409 1.002257 AGACATGGCACGCATTCCA 60.002 52.632 0.00 0.00 36.70 3.53
3915 4455 2.890371 GGCCATACTCGTCGTGGT 59.110 61.111 0.00 1.14 35.44 4.16
3916 4456 2.278596 CGGCCATACTCGTCGTGG 60.279 66.667 2.24 0.00 36.09 4.94
3917 4457 2.954868 GCGGCCATACTCGTCGTG 60.955 66.667 2.24 0.00 0.00 4.35
3918 4458 4.203076 GGCGGCCATACTCGTCGT 62.203 66.667 15.62 0.00 0.00 4.34
3922 4462 4.891727 AAGCGGCGGCCATACTCG 62.892 66.667 20.71 4.68 41.24 4.18
3923 4463 2.967615 GAAGCGGCGGCCATACTC 60.968 66.667 20.71 5.75 41.24 2.59
3924 4464 4.547367 GGAAGCGGCGGCCATACT 62.547 66.667 20.71 10.12 41.24 2.12
3944 4486 2.511145 GAAGCAGAGCAGCCGGAG 60.511 66.667 5.05 0.00 34.23 4.63
3948 4490 1.079819 TACACGAAGCAGAGCAGCC 60.080 57.895 0.00 0.00 34.23 4.85
3949 4491 1.355066 GGTACACGAAGCAGAGCAGC 61.355 60.000 0.00 0.00 0.00 5.25
3950 4492 0.737715 GGGTACACGAAGCAGAGCAG 60.738 60.000 0.00 0.00 0.00 4.24
3951 4493 1.292223 GGGTACACGAAGCAGAGCA 59.708 57.895 0.00 0.00 0.00 4.26
3952 4494 1.448013 GGGGTACACGAAGCAGAGC 60.448 63.158 0.00 0.00 0.00 4.09
3970 4515 3.584656 GTAAACAATGCGCGCGCG 61.585 61.111 45.73 45.73 45.51 6.86
3971 4516 2.202298 AGTAAACAATGCGCGCGC 60.202 55.556 45.02 45.02 42.35 6.86
3993 4538 0.822164 ATTCTTGTACCGGGACCGAG 59.178 55.000 16.09 12.71 42.83 4.63
4055 4602 9.247861 AGCTCAAAAACAATGGAGTATAGAAAT 57.752 29.630 0.00 0.00 0.00 2.17
4059 4606 7.246311 CACAGCTCAAAAACAATGGAGTATAG 58.754 38.462 0.00 0.00 0.00 1.31
4064 4612 3.318839 TCCACAGCTCAAAAACAATGGAG 59.681 43.478 0.00 0.00 31.45 3.86
4077 4625 7.947282 AGTATAAGTAAGAAGATCCACAGCTC 58.053 38.462 0.00 0.00 0.00 4.09
4091 4639 9.877178 AAACATCTCAGACCAAGTATAAGTAAG 57.123 33.333 0.00 0.00 0.00 2.34
4096 4644 9.832445 GGAATAAACATCTCAGACCAAGTATAA 57.168 33.333 0.00 0.00 0.00 0.98
4098 4646 7.861629 TGGAATAAACATCTCAGACCAAGTAT 58.138 34.615 0.00 0.00 0.00 2.12
4099 4647 7.252612 TGGAATAAACATCTCAGACCAAGTA 57.747 36.000 0.00 0.00 0.00 2.24
4100 4648 6.126863 TGGAATAAACATCTCAGACCAAGT 57.873 37.500 0.00 0.00 0.00 3.16
4102 4650 6.947733 ACATTGGAATAAACATCTCAGACCAA 59.052 34.615 0.00 0.00 38.82 3.67
4103 4651 6.484288 ACATTGGAATAAACATCTCAGACCA 58.516 36.000 0.00 0.00 0.00 4.02
4104 4652 7.396540 AACATTGGAATAAACATCTCAGACC 57.603 36.000 0.00 0.00 0.00 3.85
4105 4653 9.696917 AAAAACATTGGAATAAACATCTCAGAC 57.303 29.630 0.00 0.00 0.00 3.51
4106 4654 9.695526 CAAAAACATTGGAATAAACATCTCAGA 57.304 29.630 0.00 0.00 0.00 3.27
4107 4655 8.437742 GCAAAAACATTGGAATAAACATCTCAG 58.562 33.333 0.00 0.00 0.00 3.35
4108 4656 7.930325 TGCAAAAACATTGGAATAAACATCTCA 59.070 29.630 0.00 0.00 0.00 3.27
4109 4657 8.309163 TGCAAAAACATTGGAATAAACATCTC 57.691 30.769 0.00 0.00 0.00 2.75
4110 4658 8.149647 TCTGCAAAAACATTGGAATAAACATCT 58.850 29.630 0.00 0.00 0.00 2.90
4111 4659 8.309163 TCTGCAAAAACATTGGAATAAACATC 57.691 30.769 0.00 0.00 0.00 3.06
4112 4660 8.149647 TCTCTGCAAAAACATTGGAATAAACAT 58.850 29.630 0.00 0.00 0.00 2.71
4171 4719 3.042560 GGCCACTGTTGCCTTGTC 58.957 61.111 15.13 0.00 45.70 3.18
4181 4729 1.001641 CCTCTCCCTTTGGCCACTG 60.002 63.158 3.88 0.00 0.00 3.66
4182 4730 1.151810 TCCTCTCCCTTTGGCCACT 60.152 57.895 3.88 0.00 0.00 4.00
4183 4731 1.301293 CTCCTCTCCCTTTGGCCAC 59.699 63.158 3.88 0.00 0.00 5.01
4184 4732 1.925455 CCTCCTCTCCCTTTGGCCA 60.925 63.158 0.00 0.00 0.00 5.36
4185 4733 1.925972 ACCTCCTCTCCCTTTGGCC 60.926 63.158 0.00 0.00 0.00 5.36
4186 4734 1.301293 CACCTCCTCTCCCTTTGGC 59.699 63.158 0.00 0.00 0.00 4.52
4187 4735 0.547712 TCCACCTCCTCTCCCTTTGG 60.548 60.000 0.00 0.00 0.00 3.28
4189 4737 2.133858 TTTCCACCTCCTCTCCCTTT 57.866 50.000 0.00 0.00 0.00 3.11
4190 4738 2.367947 ATTTCCACCTCCTCTCCCTT 57.632 50.000 0.00 0.00 0.00 3.95
4191 4739 3.211000 AGATATTTCCACCTCCTCTCCCT 59.789 47.826 0.00 0.00 0.00 4.20
4193 4741 5.337975 GCATAGATATTTCCACCTCCTCTCC 60.338 48.000 0.00 0.00 0.00 3.71
4194 4742 5.247110 TGCATAGATATTTCCACCTCCTCTC 59.753 44.000 0.00 0.00 0.00 3.20
4195 4743 5.012561 GTGCATAGATATTTCCACCTCCTCT 59.987 44.000 0.00 0.00 0.00 3.69
4196 4744 5.241662 GTGCATAGATATTTCCACCTCCTC 58.758 45.833 0.00 0.00 0.00 3.71
4202 4792 4.452455 CCTTCGGTGCATAGATATTTCCAC 59.548 45.833 0.00 0.00 0.00 4.02
4205 4795 4.386049 CGACCTTCGGTGCATAGATATTTC 59.614 45.833 0.00 0.00 35.25 2.17
4222 4816 4.947147 TGCGCTTTGGCCGACCTT 62.947 61.111 9.73 0.00 36.63 3.50
4233 4827 2.352805 CCCTCTTTCCCTGCGCTT 59.647 61.111 9.73 0.00 0.00 4.68
4236 4830 2.586792 CTCCCCTCTTTCCCTGCG 59.413 66.667 0.00 0.00 0.00 5.18
4245 4849 0.985490 GTCCAGCATTCCTCCCCTCT 60.985 60.000 0.00 0.00 0.00 3.69
4262 4866 2.797177 AGAAAAGGGGCAGAGATGTC 57.203 50.000 0.00 0.00 0.00 3.06
4263 4867 3.160269 CAAAGAAAAGGGGCAGAGATGT 58.840 45.455 0.00 0.00 0.00 3.06
4264 4868 2.494870 CCAAAGAAAAGGGGCAGAGATG 59.505 50.000 0.00 0.00 0.00 2.90
4265 4869 2.110721 ACCAAAGAAAAGGGGCAGAGAT 59.889 45.455 0.00 0.00 0.00 2.75
4300 4908 1.547372 ACCAATGTTCTACGTACGCCT 59.453 47.619 16.72 0.00 0.00 5.52
4301 4909 1.657094 CACCAATGTTCTACGTACGCC 59.343 52.381 16.72 0.00 0.00 5.68
4361 4981 4.459852 AAGATATCCCCCATGAACCAAG 57.540 45.455 0.00 0.00 0.00 3.61
4391 5011 5.467399 AGCATAGTTACAGAGACTACTAGCG 59.533 44.000 0.00 0.00 33.81 4.26
4499 5142 4.724602 GAGAGCCGCGACAGCACA 62.725 66.667 8.23 0.00 45.49 4.57
4512 5155 1.005242 CAATGATCAAGCACGCGAGAG 60.005 52.381 15.93 2.87 0.00 3.20
4513 5156 1.001624 CAATGATCAAGCACGCGAGA 58.998 50.000 15.93 2.47 0.00 4.04
4514 5157 0.588233 GCAATGATCAAGCACGCGAG 60.588 55.000 15.93 5.97 0.00 5.03
4515 5158 1.425031 GCAATGATCAAGCACGCGA 59.575 52.632 15.93 0.00 0.00 5.87
4516 5159 1.584483 GGCAATGATCAAGCACGCG 60.584 57.895 20.74 3.53 0.00 6.01
4517 5160 0.248377 GAGGCAATGATCAAGCACGC 60.248 55.000 20.74 10.17 0.00 5.34
4518 5161 0.027194 CGAGGCAATGATCAAGCACG 59.973 55.000 20.74 19.70 0.00 5.34
4519 5162 0.379669 CCGAGGCAATGATCAAGCAC 59.620 55.000 20.74 14.20 0.00 4.40
4520 5163 0.252761 TCCGAGGCAATGATCAAGCA 59.747 50.000 20.74 2.15 0.00 3.91
4521 5164 1.332997 CTTCCGAGGCAATGATCAAGC 59.667 52.381 13.45 13.45 0.00 4.01
4669 5316 1.080638 AATCCTAACCAGGCCACCAA 58.919 50.000 5.01 0.00 42.30 3.67
4670 5317 0.331278 CAATCCTAACCAGGCCACCA 59.669 55.000 5.01 0.00 42.30 4.17
5078 5725 9.995003 GACATCTCATTTCTTATTCCTACTCAT 57.005 33.333 0.00 0.00 0.00 2.90
5079 5726 8.981659 TGACATCTCATTTCTTATTCCTACTCA 58.018 33.333 0.00 0.00 0.00 3.41
5080 5727 9.995003 ATGACATCTCATTTCTTATTCCTACTC 57.005 33.333 0.00 0.00 32.79 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.