Multiple sequence alignment - TraesCS6A01G325200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G325200 chr6A 100.000 7486 0 0 1 7486 558970852 558978337 0.000000e+00 13825.0
1 TraesCS6A01G325200 chr6A 93.333 180 12 0 15 194 48881910 48882089 4.450000e-67 267.0
2 TraesCS6A01G325200 chr6A 93.333 180 12 0 15 194 59323227 59323048 4.450000e-67 267.0
3 TraesCS6A01G325200 chr6D 95.945 3551 101 11 2142 5686 413987254 413990767 0.000000e+00 5720.0
4 TraesCS6A01G325200 chr6D 88.594 2113 117 43 321 2384 413985069 413987106 0.000000e+00 2453.0
5 TraesCS6A01G325200 chr6D 89.802 1010 61 14 5843 6820 413991054 413992053 0.000000e+00 1256.0
6 TraesCS6A01G325200 chr6D 88.164 659 46 14 6718 7352 413992042 413992692 0.000000e+00 756.0
7 TraesCS6A01G325200 chr6D 88.533 375 41 2 6599 6971 97767816 97767442 3.180000e-123 453.0
8 TraesCS6A01G325200 chr6D 94.444 162 5 2 5682 5843 413990856 413991013 5.800000e-61 246.0
9 TraesCS6A01G325200 chr6D 91.765 170 12 1 2448 2617 397355392 397355225 1.260000e-57 235.0
10 TraesCS6A01G325200 chr6D 75.477 367 87 3 6602 6966 345780489 345780124 7.720000e-40 176.0
11 TraesCS6A01G325200 chr6D 93.750 48 1 1 7416 7463 413992764 413992809 3.750000e-08 71.3
12 TraesCS6A01G325200 chr6B 94.673 3191 104 14 2695 5843 623726641 623729807 0.000000e+00 4891.0
13 TraesCS6A01G325200 chr6B 89.992 2378 139 44 392 2708 623724273 623726612 0.000000e+00 2981.0
14 TraesCS6A01G325200 chr6B 86.471 717 46 16 5843 6524 623729845 623730545 0.000000e+00 739.0
15 TraesCS6A01G325200 chr6B 87.311 331 31 9 7029 7352 623730602 623730928 1.190000e-97 368.0
16 TraesCS6A01G325200 chr6B 91.279 172 13 1 2448 2619 594010444 594010275 4.520000e-57 233.0
17 TraesCS6A01G325200 chr6B 88.372 172 20 0 2448 2619 558288525 558288696 2.740000e-49 207.0
18 TraesCS6A01G325200 chr6B 91.304 92 7 1 193 284 211315993 211315903 2.840000e-24 124.0
19 TraesCS6A01G325200 chr6B 95.556 45 2 0 1760 1804 30643754 30643710 1.040000e-08 73.1
20 TraesCS6A01G325200 chr6B 95.556 45 2 0 1760 1804 30731751 30731707 1.040000e-08 73.1
21 TraesCS6A01G325200 chr6B 95.556 45 2 0 1760 1804 30810697 30810653 1.040000e-08 73.1
22 TraesCS6A01G325200 chr6B 95.556 45 2 0 1760 1804 30873844 30873800 1.040000e-08 73.1
23 TraesCS6A01G325200 chr6B 93.478 46 1 1 7416 7461 623731002 623731045 4.850000e-07 67.6
24 TraesCS6A01G325200 chrUn 89.247 1116 83 16 4183 5277 302683960 302682861 0.000000e+00 1362.0
25 TraesCS6A01G325200 chrUn 89.088 1118 87 16 4183 5279 292985263 292984160 0.000000e+00 1356.0
26 TraesCS6A01G325200 chr7B 89.247 1116 83 16 4183 5277 604697357 604696258 0.000000e+00 1362.0
27 TraesCS6A01G325200 chr7B 87.070 727 51 19 4569 5279 703162420 703161721 0.000000e+00 782.0
28 TraesCS6A01G325200 chr7B 91.444 187 15 1 15 201 698649284 698649469 9.640000e-64 255.0
29 TraesCS6A01G325200 chr5A 86.537 1129 93 28 4500 5603 622110981 622109887 0.000000e+00 1188.0
30 TraesCS6A01G325200 chr5A 88.732 355 16 7 3831 4170 708203305 708203650 5.400000e-111 412.0
31 TraesCS6A01G325200 chr5A 88.732 355 14 8 3831 4170 622109768 622109425 1.940000e-110 411.0
32 TraesCS6A01G325200 chr5A 93.333 180 12 0 15 194 379345621 379345800 4.450000e-67 267.0
33 TraesCS6A01G325200 chr5A 90.184 163 13 2 2456 2616 353073111 353073272 7.610000e-50 209.0
34 TraesCS6A01G325200 chr5A 90.476 105 7 2 182 284 100642225 100642122 1.310000e-27 135.0
35 TraesCS6A01G325200 chr5B 86.460 1130 94 26 4500 5603 81178632 81179728 0.000000e+00 1184.0
36 TraesCS6A01G325200 chr5B 89.859 355 12 7 3831 4170 81179847 81180192 1.150000e-117 435.0
37 TraesCS6A01G325200 chr7A 86.082 1128 98 26 4500 5603 636730504 636729412 0.000000e+00 1158.0
38 TraesCS6A01G325200 chr7A 88.827 716 67 9 4569 5279 619626578 619627285 0.000000e+00 867.0
39 TraesCS6A01G325200 chr7A 89.014 355 15 7 3831 4170 636729293 636728948 1.160000e-112 418.0
40 TraesCS6A01G325200 chr7A 88.350 103 12 0 182 284 307084564 307084666 2.840000e-24 124.0
41 TraesCS6A01G325200 chr2A 85.867 1125 95 23 4500 5603 726586690 726585609 0.000000e+00 1138.0
42 TraesCS6A01G325200 chr2A 88.169 355 18 7 3831 4170 726585490 726585145 1.170000e-107 401.0
43 TraesCS6A01G325200 chr2A 87.546 273 29 2 15 286 265271107 265271375 2.030000e-80 311.0
44 TraesCS6A01G325200 chr2A 93.889 180 11 0 15 194 140578338 140578159 9.570000e-69 272.0
45 TraesCS6A01G325200 chr2A 87.449 247 17 4 2384 2619 369499459 369499702 9.570000e-69 272.0
46 TraesCS6A01G325200 chr2A 90.566 53 5 0 4415 4467 705772829 705772881 3.750000e-08 71.3
47 TraesCS6A01G325200 chr5D 89.532 726 54 11 4569 5279 60188320 60189038 0.000000e+00 900.0
48 TraesCS6A01G325200 chr5D 89.096 376 37 4 6599 6971 268375937 268376311 1.470000e-126 464.0
49 TraesCS6A01G325200 chr5D 87.467 375 45 2 6599 6971 138311079 138311453 1.490000e-116 431.0
50 TraesCS6A01G325200 chr5D 89.216 102 8 3 184 284 549323331 549323232 2.840000e-24 124.0
51 TraesCS6A01G325200 chr3A 88.317 719 67 12 4569 5279 681058008 681057299 0.000000e+00 846.0
52 TraesCS6A01G325200 chr3A 93.333 180 12 0 15 194 312039410 312039231 4.450000e-67 267.0
53 TraesCS6A01G325200 chr4A 87.972 715 74 8 4569 5279 139190392 139189686 0.000000e+00 833.0
54 TraesCS6A01G325200 chr4A 91.979 187 15 0 3 189 703364260 703364074 5.760000e-66 263.0
55 TraesCS6A01G325200 chr4A 92.398 171 13 0 2448 2618 242899556 242899386 2.090000e-60 244.0
56 TraesCS6A01G325200 chr2D 89.333 375 38 2 6599 6971 465949011 465948637 3.160000e-128 470.0
57 TraesCS6A01G325200 chr2D 87.938 257 30 1 6599 6854 203120451 203120195 1.220000e-77 302.0
58 TraesCS6A01G325200 chr1B 88.267 375 41 3 6599 6971 645267845 645267472 5.330000e-121 446.0
59 TraesCS6A01G325200 chr1B 95.556 45 2 0 1760 1804 117455599 117455643 1.040000e-08 73.1
60 TraesCS6A01G325200 chr3B 93.333 180 12 0 15 194 455559488 455559667 4.450000e-67 267.0
61 TraesCS6A01G325200 chr3B 88.571 105 10 2 180 284 804726435 804726537 7.890000e-25 126.0
62 TraesCS6A01G325200 chr4D 92.398 171 13 0 2448 2618 258907577 258907407 2.090000e-60 244.0
63 TraesCS6A01G325200 chr4D 94.737 152 8 0 3831 3982 65984838 65984989 3.490000e-58 237.0
64 TraesCS6A01G325200 chr4D 90.751 173 16 0 3977 4149 66002595 66002767 1.620000e-56 231.0
65 TraesCS6A01G325200 chr4D 90.000 100 9 1 191 289 431297562 431297463 2.190000e-25 128.0
66 TraesCS6A01G325200 chr4D 90.526 95 9 0 192 286 367049239 367049333 7.890000e-25 126.0
67 TraesCS6A01G325200 chr1D 76.075 372 87 2 6602 6971 259682074 259681703 7.670000e-45 193.0
68 TraesCS6A01G325200 chr2B 90.909 99 7 2 186 284 256709964 256710060 1.690000e-26 132.0
69 TraesCS6A01G325200 chr3D 86.957 69 2 1 2383 2444 12756386 12756454 3.750000e-08 71.3
70 TraesCS6A01G325200 chr3D 91.304 46 4 0 1760 1805 589210810 589210765 6.270000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G325200 chr6A 558970852 558978337 7485 False 13825.000000 13825 100.000000 1 7486 1 chr6A.!!$F2 7485
1 TraesCS6A01G325200 chr6D 413985069 413992809 7740 False 1750.383333 5720 91.783167 321 7463 6 chr6D.!!$F1 7142
2 TraesCS6A01G325200 chr6B 623724273 623731045 6772 False 1809.320000 4891 90.385000 392 7461 5 chr6B.!!$F2 7069
3 TraesCS6A01G325200 chrUn 302682861 302683960 1099 True 1362.000000 1362 89.247000 4183 5277 1 chrUn.!!$R2 1094
4 TraesCS6A01G325200 chrUn 292984160 292985263 1103 True 1356.000000 1356 89.088000 4183 5279 1 chrUn.!!$R1 1096
5 TraesCS6A01G325200 chr7B 604696258 604697357 1099 True 1362.000000 1362 89.247000 4183 5277 1 chr7B.!!$R1 1094
6 TraesCS6A01G325200 chr7B 703161721 703162420 699 True 782.000000 782 87.070000 4569 5279 1 chr7B.!!$R2 710
7 TraesCS6A01G325200 chr5A 622109425 622110981 1556 True 799.500000 1188 87.634500 3831 5603 2 chr5A.!!$R2 1772
8 TraesCS6A01G325200 chr5B 81178632 81180192 1560 False 809.500000 1184 88.159500 3831 5603 2 chr5B.!!$F1 1772
9 TraesCS6A01G325200 chr7A 619626578 619627285 707 False 867.000000 867 88.827000 4569 5279 1 chr7A.!!$F2 710
10 TraesCS6A01G325200 chr7A 636728948 636730504 1556 True 788.000000 1158 87.548000 3831 5603 2 chr7A.!!$R1 1772
11 TraesCS6A01G325200 chr2A 726585145 726586690 1545 True 769.500000 1138 87.018000 3831 5603 2 chr2A.!!$R2 1772
12 TraesCS6A01G325200 chr5D 60188320 60189038 718 False 900.000000 900 89.532000 4569 5279 1 chr5D.!!$F1 710
13 TraesCS6A01G325200 chr3A 681057299 681058008 709 True 846.000000 846 88.317000 4569 5279 1 chr3A.!!$R2 710
14 TraesCS6A01G325200 chr4A 139189686 139190392 706 True 833.000000 833 87.972000 4569 5279 1 chr4A.!!$R1 710

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
228 229 0.037139 TTTACAGGGCGTGCGTGTAT 60.037 50.000 7.17 0.00 0.00 2.29 F
1011 1060 0.105039 CTCACGCCAGAAGATACCCC 59.895 60.000 0.00 0.00 0.00 4.95 F
1199 1260 0.248949 GGTAGGCGGCGTCTTTAGAG 60.249 60.000 22.95 0.00 0.00 2.43 F
1200 1261 0.737219 GTAGGCGGCGTCTTTAGAGA 59.263 55.000 22.95 0.00 0.00 3.10 F
1364 1430 0.943359 CTGCTCGATTCGATGCCTCC 60.943 60.000 20.18 4.84 34.61 4.30 F
1511 1577 1.226295 GCTTGCAAATCGGGTACGC 60.226 57.895 0.00 0.00 40.69 4.42 F
3392 3900 0.106708 GGGAGCTGCATCGGACATTA 59.893 55.000 7.79 0.00 0.00 1.90 F
3917 4425 1.915489 ACAAGCTCATCATACACCCCA 59.085 47.619 0.00 0.00 0.00 4.96 F
5714 6421 1.956477 CAACCCTGGGAACTTGTTCTG 59.044 52.381 22.23 0.00 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1724 1796 0.178981 ACCCACAGAAACAGCAGCAT 60.179 50.000 0.00 0.0 0.00 3.79 R
2383 2848 0.106015 AGCTGAAACAAACAGGGCCT 60.106 50.000 0.00 0.0 36.09 5.19 R
2415 2880 1.522668 CCAGTGAAGCGAATCCACAA 58.477 50.000 0.00 0.0 33.53 3.33 R
3131 3639 5.246203 ACAGTAAGCAAGAGTTATCACAGGA 59.754 40.000 0.00 0.0 0.00 3.86 R
3231 3739 8.469200 TGGGAATTCTGAAAATACAAGCTTATG 58.531 33.333 5.23 0.0 0.00 1.90 R
3717 4225 8.379161 CGAGAATAACAAATCTCAGAAGTTCAG 58.621 37.037 5.50 0.0 41.73 3.02 R
5060 5643 1.332375 TCACTAGGCGTGCAAACAAAC 59.668 47.619 0.00 0.0 43.46 2.93 R
6007 7130 1.717194 TTAACGAGGAATGTGGACGC 58.283 50.000 0.00 0.0 0.00 5.19 R
7205 8494 0.028505 CCATGTGCAGATTACGCAGC 59.971 55.000 0.00 0.0 40.78 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.483808 TGTGAGACTGGTTGTAATGCA 57.516 42.857 0.00 0.00 0.00 3.96
21 22 4.019792 TGTGAGACTGGTTGTAATGCAT 57.980 40.909 0.00 0.00 0.00 3.96
22 23 5.159273 TGTGAGACTGGTTGTAATGCATA 57.841 39.130 0.00 0.00 0.00 3.14
23 24 5.178061 TGTGAGACTGGTTGTAATGCATAG 58.822 41.667 0.00 0.00 0.00 2.23
24 25 5.178797 GTGAGACTGGTTGTAATGCATAGT 58.821 41.667 0.00 0.00 0.00 2.12
25 26 6.071051 TGTGAGACTGGTTGTAATGCATAGTA 60.071 38.462 0.00 0.00 0.00 1.82
26 27 6.986817 GTGAGACTGGTTGTAATGCATAGTAT 59.013 38.462 0.00 0.00 0.00 2.12
27 28 7.169982 GTGAGACTGGTTGTAATGCATAGTATC 59.830 40.741 0.00 5.42 31.17 2.24
28 29 7.124573 AGACTGGTTGTAATGCATAGTATCA 57.875 36.000 0.00 0.00 0.00 2.15
29 30 7.739825 AGACTGGTTGTAATGCATAGTATCAT 58.260 34.615 0.00 0.00 0.00 2.45
30 31 8.870116 AGACTGGTTGTAATGCATAGTATCATA 58.130 33.333 0.00 0.00 0.00 2.15
31 32 9.658799 GACTGGTTGTAATGCATAGTATCATAT 57.341 33.333 0.00 0.00 0.00 1.78
83 84 5.585820 TCATGCATGACACAAAATAGCAT 57.414 34.783 25.42 0.00 41.42 3.79
84 85 6.696441 TCATGCATGACACAAAATAGCATA 57.304 33.333 25.42 0.00 39.00 3.14
85 86 6.731164 TCATGCATGACACAAAATAGCATAG 58.269 36.000 25.42 0.00 39.00 2.23
86 87 4.923893 TGCATGACACAAAATAGCATAGC 58.076 39.130 0.00 0.00 0.00 2.97
87 88 4.398673 TGCATGACACAAAATAGCATAGCA 59.601 37.500 0.00 0.00 0.00 3.49
88 89 5.068067 TGCATGACACAAAATAGCATAGCAT 59.932 36.000 0.00 0.00 0.00 3.79
89 90 5.981315 GCATGACACAAAATAGCATAGCATT 59.019 36.000 0.00 0.00 0.00 3.56
90 91 6.477688 GCATGACACAAAATAGCATAGCATTT 59.522 34.615 0.00 0.00 0.00 2.32
91 92 7.648908 GCATGACACAAAATAGCATAGCATTTA 59.351 33.333 0.00 0.00 0.00 1.40
92 93 9.687210 CATGACACAAAATAGCATAGCATTTAT 57.313 29.630 0.00 0.00 0.00 1.40
137 138 7.666063 TGATACTCCATCATCTCTTTCTTCA 57.334 36.000 0.00 0.00 38.79 3.02
138 139 8.260099 TGATACTCCATCATCTCTTTCTTCAT 57.740 34.615 0.00 0.00 38.79 2.57
139 140 8.712103 TGATACTCCATCATCTCTTTCTTCATT 58.288 33.333 0.00 0.00 38.79 2.57
140 141 9.558396 GATACTCCATCATCTCTTTCTTCATTT 57.442 33.333 0.00 0.00 33.46 2.32
143 144 9.917887 ACTCCATCATCTCTTTCTTCATTTAAT 57.082 29.630 0.00 0.00 0.00 1.40
145 146 9.690913 TCCATCATCTCTTTCTTCATTTAATGT 57.309 29.630 4.77 0.00 0.00 2.71
157 158 9.513906 TTCTTCATTTAATGTTATGACACCTCA 57.486 29.630 4.77 0.00 38.91 3.86
158 159 9.685276 TCTTCATTTAATGTTATGACACCTCAT 57.315 29.630 4.77 0.00 38.91 2.90
159 160 9.941664 CTTCATTTAATGTTATGACACCTCATC 57.058 33.333 4.77 0.00 38.91 2.92
160 161 9.460019 TTCATTTAATGTTATGACACCTCATCA 57.540 29.630 4.77 0.00 38.91 3.07
161 162 9.460019 TCATTTAATGTTATGACACCTCATCAA 57.540 29.630 4.77 0.00 38.91 2.57
166 167 8.991243 AATGTTATGACACCTCATCAAAATTG 57.009 30.769 0.00 0.00 38.91 2.32
167 168 7.523293 TGTTATGACACCTCATCAAAATTGT 57.477 32.000 0.00 0.00 38.21 2.71
168 169 7.950512 TGTTATGACACCTCATCAAAATTGTT 58.049 30.769 0.00 0.00 38.21 2.83
169 170 8.420222 TGTTATGACACCTCATCAAAATTGTTT 58.580 29.630 0.00 0.00 38.21 2.83
170 171 9.906660 GTTATGACACCTCATCAAAATTGTTTA 57.093 29.630 0.00 0.00 38.21 2.01
171 172 9.906660 TTATGACACCTCATCAAAATTGTTTAC 57.093 29.630 0.00 0.00 38.21 2.01
172 173 7.581213 TGACACCTCATCAAAATTGTTTACT 57.419 32.000 0.00 0.00 0.00 2.24
173 174 8.006298 TGACACCTCATCAAAATTGTTTACTT 57.994 30.769 0.00 0.00 0.00 2.24
174 175 7.920151 TGACACCTCATCAAAATTGTTTACTTG 59.080 33.333 0.00 0.00 0.00 3.16
175 176 7.209475 ACACCTCATCAAAATTGTTTACTTGG 58.791 34.615 0.00 0.00 0.00 3.61
176 177 6.146021 CACCTCATCAAAATTGTTTACTTGGC 59.854 38.462 0.00 0.00 0.00 4.52
177 178 5.345741 CCTCATCAAAATTGTTTACTTGGCG 59.654 40.000 0.00 0.00 0.00 5.69
178 179 5.837437 TCATCAAAATTGTTTACTTGGCGT 58.163 33.333 0.00 0.00 0.00 5.68
179 180 5.689514 TCATCAAAATTGTTTACTTGGCGTG 59.310 36.000 0.00 0.00 0.00 5.34
180 181 3.799420 TCAAAATTGTTTACTTGGCGTGC 59.201 39.130 0.00 0.00 0.00 5.34
181 182 3.444703 AAATTGTTTACTTGGCGTGCA 57.555 38.095 0.00 0.00 0.00 4.57
182 183 3.658757 AATTGTTTACTTGGCGTGCAT 57.341 38.095 0.00 0.00 0.00 3.96
183 184 2.414058 TTGTTTACTTGGCGTGCATG 57.586 45.000 0.09 0.09 0.00 4.06
184 185 1.598882 TGTTTACTTGGCGTGCATGA 58.401 45.000 10.93 0.00 0.00 3.07
185 186 2.158559 TGTTTACTTGGCGTGCATGAT 58.841 42.857 10.93 0.00 0.00 2.45
186 187 3.339141 TGTTTACTTGGCGTGCATGATA 58.661 40.909 10.93 0.00 0.00 2.15
187 188 3.126171 TGTTTACTTGGCGTGCATGATAC 59.874 43.478 10.93 0.00 0.00 2.24
188 189 2.979814 TACTTGGCGTGCATGATACT 57.020 45.000 10.93 0.00 0.00 2.12
189 190 2.979814 ACTTGGCGTGCATGATACTA 57.020 45.000 10.93 0.00 0.00 1.82
190 191 3.260475 ACTTGGCGTGCATGATACTAA 57.740 42.857 10.93 0.00 0.00 2.24
191 192 2.936498 ACTTGGCGTGCATGATACTAAC 59.064 45.455 10.93 0.00 0.00 2.34
192 193 2.979814 TGGCGTGCATGATACTAACT 57.020 45.000 10.93 0.00 0.00 2.24
193 194 4.142026 ACTTGGCGTGCATGATACTAACTA 60.142 41.667 10.93 0.00 0.00 2.24
194 195 3.713288 TGGCGTGCATGATACTAACTAC 58.287 45.455 10.93 0.00 0.00 2.73
195 196 3.383505 TGGCGTGCATGATACTAACTACT 59.616 43.478 10.93 0.00 0.00 2.57
196 197 4.581409 TGGCGTGCATGATACTAACTACTA 59.419 41.667 10.93 0.00 0.00 1.82
197 198 4.916249 GGCGTGCATGATACTAACTACTAC 59.084 45.833 10.93 0.00 0.00 2.73
198 199 4.916249 GCGTGCATGATACTAACTACTACC 59.084 45.833 10.93 0.00 0.00 3.18
199 200 5.278364 GCGTGCATGATACTAACTACTACCT 60.278 44.000 10.93 0.00 0.00 3.08
200 201 6.372185 CGTGCATGATACTAACTACTACCTC 58.628 44.000 0.00 0.00 0.00 3.85
201 202 6.205076 CGTGCATGATACTAACTACTACCTCT 59.795 42.308 0.00 0.00 0.00 3.69
202 203 7.571613 CGTGCATGATACTAACTACTACCTCTC 60.572 44.444 0.00 0.00 0.00 3.20
203 204 7.446013 GTGCATGATACTAACTACTACCTCTCT 59.554 40.741 0.00 0.00 0.00 3.10
204 205 7.662258 TGCATGATACTAACTACTACCTCTCTC 59.338 40.741 0.00 0.00 0.00 3.20
205 206 7.881232 GCATGATACTAACTACTACCTCTCTCT 59.119 40.741 0.00 0.00 0.00 3.10
206 207 9.431887 CATGATACTAACTACTACCTCTCTCTC 57.568 40.741 0.00 0.00 0.00 3.20
207 208 8.550280 TGATACTAACTACTACCTCTCTCTCA 57.450 38.462 0.00 0.00 0.00 3.27
208 209 8.644216 TGATACTAACTACTACCTCTCTCTCAG 58.356 40.741 0.00 0.00 0.00 3.35
209 210 6.879367 ACTAACTACTACCTCTCTCTCAGT 57.121 41.667 0.00 0.00 0.00 3.41
210 211 7.261688 ACTAACTACTACCTCTCTCTCAGTT 57.738 40.000 0.00 0.00 0.00 3.16
211 212 7.692172 ACTAACTACTACCTCTCTCTCAGTTT 58.308 38.462 0.00 0.00 0.00 2.66
212 213 8.824783 ACTAACTACTACCTCTCTCTCAGTTTA 58.175 37.037 0.00 0.00 0.00 2.01
213 214 7.926674 AACTACTACCTCTCTCTCAGTTTAC 57.073 40.000 0.00 0.00 0.00 2.01
214 215 7.018487 ACTACTACCTCTCTCTCAGTTTACA 57.982 40.000 0.00 0.00 0.00 2.41
215 216 7.107542 ACTACTACCTCTCTCTCAGTTTACAG 58.892 42.308 0.00 0.00 0.00 2.74
216 217 5.258051 ACTACCTCTCTCTCAGTTTACAGG 58.742 45.833 0.00 0.00 0.00 4.00
217 218 3.436243 ACCTCTCTCTCAGTTTACAGGG 58.564 50.000 0.00 0.00 0.00 4.45
218 219 2.167487 CCTCTCTCTCAGTTTACAGGGC 59.833 54.545 0.00 0.00 0.00 5.19
219 220 1.819288 TCTCTCTCAGTTTACAGGGCG 59.181 52.381 0.00 0.00 0.00 6.13
220 221 1.546476 CTCTCTCAGTTTACAGGGCGT 59.454 52.381 0.00 0.00 0.00 5.68
221 222 1.272490 TCTCTCAGTTTACAGGGCGTG 59.728 52.381 5.50 5.50 0.00 5.34
222 223 0.320421 TCTCAGTTTACAGGGCGTGC 60.320 55.000 7.17 0.00 0.00 5.34
223 224 1.626654 CTCAGTTTACAGGGCGTGCG 61.627 60.000 7.17 0.00 0.00 5.34
224 225 1.959226 CAGTTTACAGGGCGTGCGT 60.959 57.895 7.17 0.00 0.00 5.24
225 226 1.959226 AGTTTACAGGGCGTGCGTG 60.959 57.895 7.17 0.00 0.00 5.34
226 227 2.109387 TTTACAGGGCGTGCGTGT 59.891 55.556 7.17 4.24 0.00 4.49
227 228 0.945265 GTTTACAGGGCGTGCGTGTA 60.945 55.000 7.17 2.56 0.00 2.90
228 229 0.037139 TTTACAGGGCGTGCGTGTAT 60.037 50.000 7.17 0.00 0.00 2.29
229 230 0.458889 TTACAGGGCGTGCGTGTATC 60.459 55.000 7.17 0.00 0.00 2.24
230 231 2.287457 TACAGGGCGTGCGTGTATCC 62.287 60.000 7.17 0.00 0.00 2.59
231 232 4.157120 AGGGCGTGCGTGTATCCC 62.157 66.667 0.00 0.00 37.24 3.85
232 233 4.157120 GGGCGTGCGTGTATCCCT 62.157 66.667 0.00 0.00 34.19 4.20
233 234 2.788640 GGGCGTGCGTGTATCCCTA 61.789 63.158 0.00 0.00 34.19 3.53
234 235 1.299926 GGCGTGCGTGTATCCCTAG 60.300 63.158 0.00 0.00 0.00 3.02
235 236 1.731433 GGCGTGCGTGTATCCCTAGA 61.731 60.000 0.00 0.00 0.00 2.43
236 237 0.314302 GCGTGCGTGTATCCCTAGAT 59.686 55.000 0.00 0.00 36.44 1.98
237 238 1.269621 GCGTGCGTGTATCCCTAGATT 60.270 52.381 0.00 0.00 33.67 2.40
238 239 2.030540 GCGTGCGTGTATCCCTAGATTA 60.031 50.000 0.00 0.00 33.67 1.75
239 240 3.367087 GCGTGCGTGTATCCCTAGATTAT 60.367 47.826 0.00 0.00 33.67 1.28
240 241 4.413087 CGTGCGTGTATCCCTAGATTATC 58.587 47.826 0.00 0.00 33.67 1.75
241 242 4.082949 CGTGCGTGTATCCCTAGATTATCA 60.083 45.833 0.00 0.00 33.67 2.15
242 243 5.564063 CGTGCGTGTATCCCTAGATTATCAA 60.564 44.000 0.00 0.00 33.67 2.57
243 244 6.398918 GTGCGTGTATCCCTAGATTATCAAT 58.601 40.000 0.00 0.00 33.67 2.57
244 245 6.874134 GTGCGTGTATCCCTAGATTATCAATT 59.126 38.462 0.00 0.00 33.67 2.32
245 246 7.387948 GTGCGTGTATCCCTAGATTATCAATTT 59.612 37.037 0.00 0.00 33.67 1.82
246 247 8.590204 TGCGTGTATCCCTAGATTATCAATTTA 58.410 33.333 0.00 0.00 33.67 1.40
247 248 9.431887 GCGTGTATCCCTAGATTATCAATTTAA 57.568 33.333 0.00 0.00 33.67 1.52
253 254 8.990163 TCCCTAGATTATCAATTTAACCAACC 57.010 34.615 0.00 0.00 0.00 3.77
254 255 8.787818 TCCCTAGATTATCAATTTAACCAACCT 58.212 33.333 0.00 0.00 0.00 3.50
263 264 7.648039 TCAATTTAACCAACCTAACACAAGT 57.352 32.000 0.00 0.00 0.00 3.16
264 265 7.708998 TCAATTTAACCAACCTAACACAAGTC 58.291 34.615 0.00 0.00 0.00 3.01
265 266 7.339721 TCAATTTAACCAACCTAACACAAGTCA 59.660 33.333 0.00 0.00 0.00 3.41
266 267 7.833285 ATTTAACCAACCTAACACAAGTCAT 57.167 32.000 0.00 0.00 0.00 3.06
267 268 8.927675 ATTTAACCAACCTAACACAAGTCATA 57.072 30.769 0.00 0.00 0.00 2.15
268 269 8.927675 TTTAACCAACCTAACACAAGTCATAT 57.072 30.769 0.00 0.00 0.00 1.78
271 272 8.732746 AACCAACCTAACACAAGTCATATATC 57.267 34.615 0.00 0.00 0.00 1.63
272 273 7.857456 ACCAACCTAACACAAGTCATATATCA 58.143 34.615 0.00 0.00 0.00 2.15
273 274 7.769044 ACCAACCTAACACAAGTCATATATCAC 59.231 37.037 0.00 0.00 0.00 3.06
274 275 7.768582 CCAACCTAACACAAGTCATATATCACA 59.231 37.037 0.00 0.00 0.00 3.58
275 276 9.161629 CAACCTAACACAAGTCATATATCACAA 57.838 33.333 0.00 0.00 0.00 3.33
276 277 9.733556 AACCTAACACAAGTCATATATCACAAA 57.266 29.630 0.00 0.00 0.00 2.83
277 278 9.733556 ACCTAACACAAGTCATATATCACAAAA 57.266 29.630 0.00 0.00 0.00 2.44
297 298 5.813080 AAAAACTATCATTACGACCAGCC 57.187 39.130 0.00 0.00 0.00 4.85
298 299 4.755266 AAACTATCATTACGACCAGCCT 57.245 40.909 0.00 0.00 0.00 4.58
299 300 3.735237 ACTATCATTACGACCAGCCTG 57.265 47.619 0.00 0.00 0.00 4.85
300 301 3.296854 ACTATCATTACGACCAGCCTGA 58.703 45.455 0.00 0.00 0.00 3.86
301 302 2.898729 ATCATTACGACCAGCCTGAG 57.101 50.000 0.00 0.00 0.00 3.35
302 303 0.175760 TCATTACGACCAGCCTGAGC 59.824 55.000 0.00 0.00 40.32 4.26
303 304 0.811616 CATTACGACCAGCCTGAGCC 60.812 60.000 0.00 0.00 41.25 4.70
304 305 1.264749 ATTACGACCAGCCTGAGCCA 61.265 55.000 0.00 0.00 41.25 4.75
305 306 2.167398 TTACGACCAGCCTGAGCCAC 62.167 60.000 0.00 0.00 41.25 5.01
306 307 4.007644 CGACCAGCCTGAGCCACA 62.008 66.667 0.00 0.00 41.25 4.17
307 308 2.359230 GACCAGCCTGAGCCACAC 60.359 66.667 0.00 0.00 41.25 3.82
308 309 2.851102 ACCAGCCTGAGCCACACT 60.851 61.111 0.00 0.00 41.25 3.55
309 310 2.403132 GACCAGCCTGAGCCACACTT 62.403 60.000 0.00 0.00 41.25 3.16
310 311 1.228367 CCAGCCTGAGCCACACTTT 60.228 57.895 0.00 0.00 41.25 2.66
311 312 1.521450 CCAGCCTGAGCCACACTTTG 61.521 60.000 0.00 0.00 41.25 2.77
312 313 1.900498 AGCCTGAGCCACACTTTGC 60.900 57.895 0.00 0.00 41.25 3.68
313 314 2.924105 GCCTGAGCCACACTTTGCC 61.924 63.158 0.00 0.00 0.00 4.52
314 315 1.228367 CCTGAGCCACACTTTGCCT 60.228 57.895 0.00 0.00 0.00 4.75
315 316 1.239968 CCTGAGCCACACTTTGCCTC 61.240 60.000 0.00 0.00 0.00 4.70
316 317 0.250640 CTGAGCCACACTTTGCCTCT 60.251 55.000 0.00 0.00 0.00 3.69
317 318 1.002430 CTGAGCCACACTTTGCCTCTA 59.998 52.381 0.00 0.00 0.00 2.43
318 319 1.002430 TGAGCCACACTTTGCCTCTAG 59.998 52.381 0.00 0.00 0.00 2.43
319 320 1.276421 GAGCCACACTTTGCCTCTAGA 59.724 52.381 0.00 0.00 0.00 2.43
320 321 1.277557 AGCCACACTTTGCCTCTAGAG 59.722 52.381 13.18 13.18 0.00 2.43
339 340 2.291190 GAGGCTACGGCTACAAGTAGAG 59.709 54.545 11.25 6.53 41.99 2.43
341 342 2.022934 GCTACGGCTACAAGTAGAGGT 58.977 52.381 11.25 9.42 41.99 3.85
354 355 6.413892 ACAAGTAGAGGTAGTAGTAGTGTCC 58.586 44.000 0.00 0.00 0.00 4.02
357 358 2.843113 AGAGGTAGTAGTAGTGTCCGGT 59.157 50.000 0.00 0.00 0.00 5.28
376 377 2.029110 GGTGAGCTTTATTGCTTTGCCA 60.029 45.455 0.00 0.00 44.17 4.92
441 442 2.094752 GGCAATAATTATCGGCCGCAAT 60.095 45.455 23.51 19.12 34.56 3.56
458 459 5.116528 GCCGCAATAATAAACCGCTTAAATC 59.883 40.000 0.00 0.00 0.00 2.17
602 605 2.499685 CATCGAACTCCCCGTCCC 59.500 66.667 0.00 0.00 0.00 4.46
670 674 1.078759 CACCGCAGACTTCCATCGAC 61.079 60.000 0.00 0.00 0.00 4.20
808 824 3.117171 CGAGACGAGACGACGGGT 61.117 66.667 0.00 0.00 37.61 5.28
967 1016 1.738099 CAGAGTCGGTTTCGCCCAG 60.738 63.158 0.00 0.00 36.13 4.45
968 1017 1.906824 AGAGTCGGTTTCGCCCAGA 60.907 57.895 0.00 0.00 36.13 3.86
969 1018 1.446272 GAGTCGGTTTCGCCCAGAG 60.446 63.158 0.00 0.00 36.13 3.35
970 1019 2.434359 GTCGGTTTCGCCCAGAGG 60.434 66.667 0.00 0.00 36.13 3.69
1009 1058 2.979130 GCTCACGCCAGAAGATACC 58.021 57.895 0.00 0.00 0.00 2.73
1010 1059 0.530870 GCTCACGCCAGAAGATACCC 60.531 60.000 0.00 0.00 0.00 3.69
1011 1060 0.105039 CTCACGCCAGAAGATACCCC 59.895 60.000 0.00 0.00 0.00 4.95
1012 1061 1.227263 CACGCCAGAAGATACCCCG 60.227 63.158 0.00 0.00 0.00 5.73
1154 1215 1.061411 CGATTCGTGTCGCGTAGGA 59.939 57.895 5.77 5.19 42.13 2.94
1156 1217 0.591741 GATTCGTGTCGCGTAGGAGG 60.592 60.000 5.77 0.00 42.13 4.30
1158 1219 4.189188 CGTGTCGCGTAGGAGGGG 62.189 72.222 5.77 0.00 35.54 4.79
1162 1223 4.517934 TCGCGTAGGAGGGGAGGG 62.518 72.222 5.77 0.00 0.00 4.30
1199 1260 0.248949 GGTAGGCGGCGTCTTTAGAG 60.249 60.000 22.95 0.00 0.00 2.43
1200 1261 0.737219 GTAGGCGGCGTCTTTAGAGA 59.263 55.000 22.95 0.00 0.00 3.10
1338 1404 1.760480 GACAGAGCTCTCCCTCCCC 60.760 68.421 14.96 0.00 32.17 4.81
1364 1430 0.943359 CTGCTCGATTCGATGCCTCC 60.943 60.000 20.18 4.84 34.61 4.30
1428 1494 2.529619 GGAATTCTGGCGCGCTCTC 61.530 63.158 32.29 15.45 0.00 3.20
1511 1577 1.226295 GCTTGCAAATCGGGTACGC 60.226 57.895 0.00 0.00 40.69 4.42
1547 1613 5.694995 TCTCAGGGGATTGGATGTTTATTC 58.305 41.667 0.00 0.00 0.00 1.75
1552 1618 2.890945 GGATTGGATGTTTATTCGGGGG 59.109 50.000 0.00 0.00 0.00 5.40
1660 1732 3.511146 TGGGGATTGATTTGAGCAAACTC 59.489 43.478 0.00 0.00 43.76 3.01
1685 1757 6.873605 CCATCTGTTATTGTCTGTGTTCAGTA 59.126 38.462 0.00 0.00 41.91 2.74
1686 1758 7.387673 CCATCTGTTATTGTCTGTGTTCAGTAA 59.612 37.037 0.00 0.00 41.91 2.24
1687 1759 8.773645 CATCTGTTATTGTCTGTGTTCAGTAAA 58.226 33.333 0.00 0.00 41.91 2.01
1724 1796 6.183360 GGTCTTGTGCTGTACTGGAATAGATA 60.183 42.308 1.65 0.00 0.00 1.98
1725 1797 7.437748 GTCTTGTGCTGTACTGGAATAGATAT 58.562 38.462 1.65 0.00 0.00 1.63
1726 1798 7.383572 GTCTTGTGCTGTACTGGAATAGATATG 59.616 40.741 1.65 0.00 0.00 1.78
1727 1799 5.541845 TGTGCTGTACTGGAATAGATATGC 58.458 41.667 1.65 0.00 0.00 3.14
1732 1804 5.787380 TGTACTGGAATAGATATGCTGCTG 58.213 41.667 0.00 0.00 0.00 4.41
1736 1808 5.762218 ACTGGAATAGATATGCTGCTGTTTC 59.238 40.000 0.00 0.00 0.00 2.78
1754 1826 5.024118 TGTTTCTGTGGGTAAAGGGAAAAA 58.976 37.500 0.00 0.00 0.00 1.94
1814 1886 1.234615 GCAACAGTTCCTAGCGGCAA 61.235 55.000 1.45 0.00 0.00 4.52
1844 1916 3.002759 GGCGAGAATCTCAAATTGGTAGC 59.997 47.826 11.18 2.07 0.00 3.58
1917 1989 9.987272 AAGAAAAAGACAAGAAATATCCCAAAG 57.013 29.630 0.00 0.00 0.00 2.77
2000 2073 7.544915 AGTCTAGCGTTTACTTTCTTATTGGAC 59.455 37.037 0.00 0.00 0.00 4.02
2007 2080 7.064253 CGTTTACTTTCTTATTGGACAGGGTAG 59.936 40.741 0.00 0.00 0.00 3.18
2012 2085 8.002459 ACTTTCTTATTGGACAGGGTAGAAAAA 58.998 33.333 0.00 0.00 31.92 1.94
2013 2086 7.996098 TTCTTATTGGACAGGGTAGAAAAAG 57.004 36.000 0.00 0.00 0.00 2.27
2025 2098 7.141363 CAGGGTAGAAAAAGAAAACAGTGATG 58.859 38.462 0.00 0.00 0.00 3.07
2058 2135 3.491598 AAAGGACACCGGTGCTGGG 62.492 63.158 34.26 11.24 45.86 4.45
2061 2139 2.264794 GACACCGGTGCTGGGTAG 59.735 66.667 34.26 8.76 35.58 3.18
2077 2155 6.262273 TGCTGGGTAGTTTTGCTATATAAAGC 59.738 38.462 0.00 0.00 43.08 3.51
2092 2170 8.072567 GCTATATAAAGCAGTTGATGGACAAAG 58.927 37.037 0.00 0.00 42.30 2.77
2097 2175 2.653890 CAGTTGATGGACAAAGTTGCG 58.346 47.619 0.00 0.00 40.36 4.85
2155 2620 1.881973 GCACTGGAGCTGTTCAATTGA 59.118 47.619 3.38 3.38 0.00 2.57
2224 2689 6.546395 CACACACTTATAGCAAAGTCAATCC 58.454 40.000 0.00 0.00 37.61 3.01
2307 2772 3.879892 GCACCTCCCTTTAGATTGATGAC 59.120 47.826 0.00 0.00 0.00 3.06
2383 2848 9.658799 CACATATCAGAGAGAAGAAAGGTTAAA 57.341 33.333 0.00 0.00 0.00 1.52
2415 2880 4.454678 TGTTTCAGCTTCAGTTGATCACT 58.545 39.130 0.00 0.00 35.26 3.41
2507 2972 4.040217 TCAGGCAATTGCACTAAAAATGGT 59.960 37.500 30.32 0.07 44.36 3.55
2509 2974 4.284234 AGGCAATTGCACTAAAAATGGTCT 59.716 37.500 30.32 11.42 44.36 3.85
2707 3213 1.410004 CCATGGCATGCTGAAATCCT 58.590 50.000 22.02 0.00 0.00 3.24
3077 3583 5.578727 CACTTTACTCTCTTATGCACCAGTC 59.421 44.000 0.00 0.00 0.00 3.51
3083 3589 1.833630 TCTTATGCACCAGTCCCTCTG 59.166 52.381 0.00 0.00 43.27 3.35
3231 3739 4.382577 GGAGAAAGAGAGATGAAGGTGGAC 60.383 50.000 0.00 0.00 0.00 4.02
3392 3900 0.106708 GGGAGCTGCATCGGACATTA 59.893 55.000 7.79 0.00 0.00 1.90
3717 4225 6.645306 AGCATCTCTCCTAAAGGTAAAAGTC 58.355 40.000 0.00 0.00 36.34 3.01
3854 4362 3.238441 CACTGAGAGTGTAAAGAGCGAC 58.762 50.000 0.00 0.00 41.19 5.19
3917 4425 1.915489 ACAAGCTCATCATACACCCCA 59.085 47.619 0.00 0.00 0.00 4.96
4276 4784 2.402564 CCCATGGATGTGTCCTCTAGT 58.597 52.381 15.22 0.00 45.32 2.57
4296 4806 4.262617 AGTCAGAGCACTATACGTCTTGA 58.737 43.478 0.00 0.00 0.00 3.02
4304 4814 5.750547 AGCACTATACGTCTTGATGTCATTG 59.249 40.000 0.00 0.00 0.00 2.82
4314 4824 7.148573 ACGTCTTGATGTCATTGATTACTGTTC 60.149 37.037 0.00 0.00 0.00 3.18
4346 4856 9.832445 GGATTTTATGACCTCTACAAGAATGTA 57.168 33.333 0.00 0.00 41.05 2.29
4362 4872 4.832266 AGAATGTACCAATGTTGAAGGCAA 59.168 37.500 0.00 0.00 0.00 4.52
4436 4946 8.900983 AAATGATCTCAAGGCTTAAGTATCTC 57.099 34.615 0.00 0.00 0.00 2.75
4438 4948 4.920640 TCTCAAGGCTTAAGTATCTCGG 57.079 45.455 0.00 0.00 0.00 4.63
4441 4951 5.007385 TCAAGGCTTAAGTATCTCGGAAC 57.993 43.478 0.00 0.00 0.00 3.62
4481 4991 4.599047 TTTCCAACAGGCTTTTACATGG 57.401 40.909 0.00 0.00 0.00 3.66
4670 5198 2.923655 CAGTGCGGTTATCAGTACAGTG 59.076 50.000 0.00 0.00 0.00 3.66
4790 5326 8.471457 CGTTTGTGTTTTTATTCTGATGACTTG 58.529 33.333 0.00 0.00 0.00 3.16
5012 5595 2.744202 CCTGCGCTTACATCTGAAACTT 59.256 45.455 9.73 0.00 0.00 2.66
5060 5643 8.012957 AGATCTTCTGTACCAGGTAACATAAG 57.987 38.462 0.00 10.01 41.41 1.73
5071 5654 5.689961 CCAGGTAACATAAGTTTGTTTGCAC 59.310 40.000 8.17 3.01 40.25 4.57
5180 5766 4.693095 GGTTTTGTTGCCTTCTTTTCAACA 59.307 37.500 3.27 3.27 45.52 3.33
5246 5833 5.500234 TGCAGAGGTAGTATTTGCAAATCT 58.500 37.500 27.28 23.08 41.34 2.40
5284 5871 9.803315 AGTCAAAAATCTGAATGATGATTGATG 57.197 29.630 0.00 0.00 39.99 3.07
5285 5872 9.797556 GTCAAAAATCTGAATGATGATTGATGA 57.202 29.630 0.00 0.00 39.99 2.92
5290 5877 8.747538 AATCTGAATGATGATTGATGAGAACA 57.252 30.769 0.00 0.00 35.21 3.18
5291 5878 7.549615 TCTGAATGATGATTGATGAGAACAC 57.450 36.000 0.00 0.00 0.00 3.32
5292 5879 6.541278 TCTGAATGATGATTGATGAGAACACC 59.459 38.462 0.00 0.00 0.00 4.16
5293 5880 5.591472 TGAATGATGATTGATGAGAACACCC 59.409 40.000 0.00 0.00 0.00 4.61
5294 5881 4.573021 TGATGATTGATGAGAACACCCA 57.427 40.909 0.00 0.00 0.00 4.51
5311 5907 3.508793 CACCCATGCTTTTCTGAGTTCAT 59.491 43.478 0.00 0.00 0.00 2.57
5318 5914 7.540055 CCATGCTTTTCTGAGTTCATACTTTTC 59.460 37.037 0.00 0.00 33.84 2.29
5406 6006 6.436847 CACATTATGCCCCCATGTATTATGAA 59.563 38.462 0.00 0.00 32.85 2.57
5607 6207 6.320926 TCATTCAATGGTGTTTCTGAACTTCA 59.679 34.615 0.00 0.00 36.70 3.02
5637 6237 6.833416 TGAAATACCCCCTCTGTATCAAAATG 59.167 38.462 0.00 0.00 0.00 2.32
5714 6421 1.956477 CAACCCTGGGAACTTGTTCTG 59.044 52.381 22.23 0.00 0.00 3.02
5720 6427 4.202151 CCCTGGGAACTTGTTCTGAAAAAG 60.202 45.833 16.87 16.87 0.00 2.27
5737 6446 5.127031 TGAAAAAGAAAACCCTGAGAACTGG 59.873 40.000 0.00 0.00 35.34 4.00
5814 6548 3.735237 ACAGCCAATCTACCATAGACG 57.265 47.619 0.00 0.00 37.69 4.18
5897 7016 7.633193 AACTGTTTTAACTGTATTGTGGTGA 57.367 32.000 5.71 0.00 39.69 4.02
6007 7130 8.739039 TGGATCACTATGTTCTTGTTTATTTGG 58.261 33.333 0.00 0.00 0.00 3.28
6009 7132 6.607689 TCACTATGTTCTTGTTTATTTGGCG 58.392 36.000 0.00 0.00 0.00 5.69
6017 7140 4.279671 TCTTGTTTATTTGGCGTCCACATT 59.720 37.500 3.44 0.00 30.78 2.71
6018 7141 4.167554 TGTTTATTTGGCGTCCACATTC 57.832 40.909 3.44 0.00 30.78 2.67
6019 7142 3.057174 TGTTTATTTGGCGTCCACATTCC 60.057 43.478 3.44 0.00 30.78 3.01
6020 7143 2.799126 TATTTGGCGTCCACATTCCT 57.201 45.000 3.44 0.00 30.78 3.36
6021 7144 1.463674 ATTTGGCGTCCACATTCCTC 58.536 50.000 0.00 0.00 30.78 3.71
6022 7145 0.953471 TTTGGCGTCCACATTCCTCG 60.953 55.000 0.00 0.00 30.78 4.63
6023 7146 2.107041 TTGGCGTCCACATTCCTCGT 62.107 55.000 0.00 0.00 30.78 4.18
6024 7147 1.375523 GGCGTCCACATTCCTCGTT 60.376 57.895 0.00 0.00 0.00 3.85
6025 7148 0.108520 GGCGTCCACATTCCTCGTTA 60.109 55.000 0.00 0.00 0.00 3.18
6026 7149 1.673626 GGCGTCCACATTCCTCGTTAA 60.674 52.381 0.00 0.00 0.00 2.01
6027 7150 2.070783 GCGTCCACATTCCTCGTTAAA 58.929 47.619 0.00 0.00 0.00 1.52
6028 7151 2.481185 GCGTCCACATTCCTCGTTAAAA 59.519 45.455 0.00 0.00 0.00 1.52
6031 7154 5.086058 CGTCCACATTCCTCGTTAAAATTG 58.914 41.667 0.00 0.00 0.00 2.32
6238 7402 9.399797 TCATACAGCTTCTAATGTTTCATCAAT 57.600 29.630 0.00 0.00 0.00 2.57
6375 7540 7.197071 TGTTTGTCCATTGTAGTGTAATGTC 57.803 36.000 0.00 0.00 34.51 3.06
6381 7546 8.097662 TGTCCATTGTAGTGTAATGTCATGTAA 58.902 33.333 0.00 0.00 34.51 2.41
6382 7547 9.109393 GTCCATTGTAGTGTAATGTCATGTAAT 57.891 33.333 0.00 0.00 34.51 1.89
6478 7648 8.968969 AGTATATGAGAGAGTTCGTTACCTTTT 58.031 33.333 0.00 0.00 0.00 2.27
6546 7716 2.028130 TGTGTTTGGTTTACAGCCCAG 58.972 47.619 0.00 0.00 31.04 4.45
6620 7790 0.962356 ACTCAAATGCTTGGCTCCCG 60.962 55.000 0.00 0.00 33.01 5.14
6664 7840 4.036144 TCATGTTTGATTTTGCTGACGACA 59.964 37.500 0.00 0.00 0.00 4.35
6667 7843 4.739228 TGTTTGATTTTGCTGACGACAATG 59.261 37.500 0.00 0.00 0.00 2.82
6674 7850 0.037326 GCTGACGACAATGGAGGTCA 60.037 55.000 0.00 3.92 37.77 4.02
6682 7858 0.035725 CAATGGAGGTCAGAGCAGCA 60.036 55.000 1.66 0.00 0.00 4.41
6709 7885 1.122323 CGAAAAATTCTTGCGTTGCGG 59.878 47.619 0.00 0.00 0.00 5.69
6745 7921 5.363562 TCCATGAGACAAGCATCATAACT 57.636 39.130 0.00 0.00 34.42 2.24
6783 8051 4.330250 CTGTTTTGACCTCCATCACTCAT 58.670 43.478 0.00 0.00 0.00 2.90
6790 8058 3.632333 ACCTCCATCACTCATCGTCTTA 58.368 45.455 0.00 0.00 0.00 2.10
6793 8061 3.982475 TCCATCACTCATCGTCTTATGC 58.018 45.455 0.00 0.00 0.00 3.14
6803 8071 1.412343 TCGTCTTATGCCAGCATGCTA 59.588 47.619 22.19 5.30 37.82 3.49
6827 8095 2.306805 ACTGAATCTTCATGCCTCCACA 59.693 45.455 0.00 0.00 36.46 4.17
6856 8124 1.912043 AGTGGTCTTGAATGCCTAGCT 59.088 47.619 0.00 0.00 0.00 3.32
6881 8149 2.609491 CGGTGATCTCGTTCCAAACTCA 60.609 50.000 0.00 0.00 0.00 3.41
6893 8161 4.104383 TCCAAACTCAGGCAGAAAATCT 57.896 40.909 0.00 0.00 0.00 2.40
6896 8164 4.142816 CCAAACTCAGGCAGAAAATCTACG 60.143 45.833 0.00 0.00 0.00 3.51
6913 8181 1.687563 ACGTTGGAAAAGAAGGTGGG 58.312 50.000 0.00 0.00 0.00 4.61
6914 8182 0.313987 CGTTGGAAAAGAAGGTGGGC 59.686 55.000 0.00 0.00 0.00 5.36
6915 8183 1.408969 GTTGGAAAAGAAGGTGGGCA 58.591 50.000 0.00 0.00 0.00 5.36
6916 8184 1.341209 GTTGGAAAAGAAGGTGGGCAG 59.659 52.381 0.00 0.00 0.00 4.85
6986 8274 5.514279 CCATCTCGGCAATGAAGAATTAAC 58.486 41.667 0.00 0.00 0.00 2.01
6987 8275 4.857871 TCTCGGCAATGAAGAATTAACG 57.142 40.909 0.00 0.00 0.00 3.18
7019 8307 3.518634 TGATGTTGTAGCGCACTGATA 57.481 42.857 11.47 0.00 0.00 2.15
7039 8327 6.689554 TGATACATTGCACACATCAACATTT 58.310 32.000 0.00 0.00 0.00 2.32
7135 8424 4.342092 CCGGGGAAAAATGATTAGCTTGAT 59.658 41.667 0.00 0.00 0.00 2.57
7141 8430 8.199449 GGGAAAAATGATTAGCTTGATGATCAA 58.801 33.333 7.73 7.73 34.79 2.57
7149 8438 8.795513 TGATTAGCTTGATGATCAACTTTTGAA 58.204 29.630 3.29 0.00 43.95 2.69
7159 8448 5.412594 TGATCAACTTTTGAATTCCCTCTCG 59.587 40.000 2.27 0.00 43.95 4.04
7160 8449 3.502211 TCAACTTTTGAATTCCCTCTCGC 59.498 43.478 2.27 0.00 36.59 5.03
7183 8472 4.978099 TGCAGATCCCATCTATTCTTTCC 58.022 43.478 0.00 0.00 37.58 3.13
7189 8478 3.898123 TCCCATCTATTCTTTCCTCTCCG 59.102 47.826 0.00 0.00 0.00 4.63
7195 8484 0.974383 TTCTTTCCTCTCCGGTGTCC 59.026 55.000 0.00 0.00 0.00 4.02
7205 8494 2.882876 CGGTGTCCGGTACTCCTG 59.117 66.667 17.34 10.56 44.15 3.86
7208 8497 1.215647 GTGTCCGGTACTCCTGCTG 59.784 63.158 0.00 0.00 0.00 4.41
7210 8499 3.449227 TCCGGTACTCCTGCTGCG 61.449 66.667 0.00 0.00 0.00 5.18
7211 8500 3.760035 CCGGTACTCCTGCTGCGT 61.760 66.667 0.00 0.00 0.00 5.24
7212 8501 2.412323 CCGGTACTCCTGCTGCGTA 61.412 63.158 0.00 0.00 0.00 4.42
7213 8502 1.509463 CGGTACTCCTGCTGCGTAA 59.491 57.895 0.00 0.00 0.00 3.18
7214 8503 0.102481 CGGTACTCCTGCTGCGTAAT 59.898 55.000 0.00 0.00 0.00 1.89
7215 8504 1.854227 GGTACTCCTGCTGCGTAATC 58.146 55.000 0.00 0.00 0.00 1.75
7226 8518 2.216046 CTGCGTAATCTGCACATGGAT 58.784 47.619 0.00 0.00 37.44 3.41
7227 8519 2.212652 TGCGTAATCTGCACATGGATC 58.787 47.619 0.00 0.00 37.44 3.36
7257 8549 0.321475 TTGCATCACGATCACAGGCA 60.321 50.000 0.00 0.00 0.00 4.75
7260 8552 1.153289 ATCACGATCACAGGCAGCC 60.153 57.895 1.84 1.84 0.00 4.85
7300 8594 6.467677 CATGTGGGGTTGGTAGATTAGATAG 58.532 44.000 0.00 0.00 0.00 2.08
7301 8595 4.905456 TGTGGGGTTGGTAGATTAGATAGG 59.095 45.833 0.00 0.00 0.00 2.57
7302 8596 4.906060 GTGGGGTTGGTAGATTAGATAGGT 59.094 45.833 0.00 0.00 0.00 3.08
7303 8597 6.080009 GTGGGGTTGGTAGATTAGATAGGTA 58.920 44.000 0.00 0.00 0.00 3.08
7323 8617 3.418913 CGGATCCACGCGTGCAAA 61.419 61.111 33.17 20.27 0.00 3.68
7327 8621 3.254014 ATCCACGCGTGCAAACAGC 62.254 57.895 33.17 0.00 45.96 4.40
7352 8648 0.034186 GTCCAGGCATCATGGTTCCA 60.034 55.000 0.00 0.00 39.01 3.53
7353 8649 0.703488 TCCAGGCATCATGGTTCCAA 59.297 50.000 0.00 0.00 39.01 3.53
7356 8652 2.173519 CAGGCATCATGGTTCCAAGTT 58.826 47.619 0.00 0.00 0.00 2.66
7357 8653 2.564062 CAGGCATCATGGTTCCAAGTTT 59.436 45.455 0.00 0.00 0.00 2.66
7358 8654 3.007182 CAGGCATCATGGTTCCAAGTTTT 59.993 43.478 0.00 0.00 0.00 2.43
7363 8659 5.625197 GCATCATGGTTCCAAGTTTTAGCAT 60.625 40.000 0.00 0.00 0.00 3.79
7365 8661 4.220382 TCATGGTTCCAAGTTTTAGCATGG 59.780 41.667 15.34 0.00 43.21 3.66
7366 8662 2.298729 TGGTTCCAAGTTTTAGCATGGC 59.701 45.455 0.00 0.00 32.87 4.40
7369 8665 2.509569 TCCAAGTTTTAGCATGGCGAA 58.490 42.857 0.00 0.00 32.87 4.70
7371 8667 2.986479 CCAAGTTTTAGCATGGCGAAAC 59.014 45.455 12.23 12.23 38.61 2.78
7372 8668 3.551863 CCAAGTTTTAGCATGGCGAAACA 60.552 43.478 18.32 0.00 39.75 2.83
7377 8691 3.485947 TTAGCATGGCGAAACAATCAC 57.514 42.857 0.00 0.00 0.00 3.06
7383 8697 2.004017 TGGCGAAACAATCACCGATAC 58.996 47.619 0.00 0.00 32.56 2.24
7387 8703 3.369756 GCGAAACAATCACCGATACAGAA 59.630 43.478 0.00 0.00 0.00 3.02
7393 8709 5.171476 ACAATCACCGATACAGAAGTTCAG 58.829 41.667 5.50 0.00 0.00 3.02
7404 8720 4.642429 ACAGAAGTTCAGTGAACCCATAC 58.358 43.478 28.29 16.40 42.85 2.39
7405 8721 3.679980 CAGAAGTTCAGTGAACCCATACG 59.320 47.826 28.29 11.65 42.85 3.06
7406 8722 2.094762 AGTTCAGTGAACCCATACGC 57.905 50.000 28.29 5.19 42.85 4.42
7407 8723 1.346395 AGTTCAGTGAACCCATACGCA 59.654 47.619 28.29 0.00 42.85 5.24
7408 8724 1.732259 GTTCAGTGAACCCATACGCAG 59.268 52.381 23.03 0.00 36.65 5.18
7409 8725 0.391130 TCAGTGAACCCATACGCAGC 60.391 55.000 0.00 0.00 0.00 5.25
7410 8726 0.391661 CAGTGAACCCATACGCAGCT 60.392 55.000 0.00 0.00 0.00 4.24
7411 8727 0.391661 AGTGAACCCATACGCAGCTG 60.392 55.000 10.11 10.11 0.00 4.24
7412 8728 0.673644 GTGAACCCATACGCAGCTGT 60.674 55.000 16.64 0.00 0.00 4.40
7413 8729 0.036164 TGAACCCATACGCAGCTGTT 59.964 50.000 16.64 5.35 0.00 3.16
7414 8730 1.276705 TGAACCCATACGCAGCTGTTA 59.723 47.619 16.64 7.61 0.00 2.41
7445 8761 2.284417 GGATACGCCGTGTGAAAATCTC 59.716 50.000 0.00 0.00 0.00 2.75
7446 8762 2.736144 TACGCCGTGTGAAAATCTCT 57.264 45.000 0.00 0.00 0.00 3.10
7456 8772 0.522076 GAAAATCTCTTGCGCTGCCG 60.522 55.000 9.73 0.00 37.57 5.69
7482 8798 0.374758 TCGTGTATGTACGAGTCGGC 59.625 55.000 18.30 9.84 46.94 5.54
7483 8799 0.097499 CGTGTATGTACGAGTCGGCA 59.903 55.000 18.30 15.31 46.46 5.69
7484 8800 1.823828 GTGTATGTACGAGTCGGCAG 58.176 55.000 18.30 0.00 0.00 4.85
7485 8801 1.399440 GTGTATGTACGAGTCGGCAGA 59.601 52.381 18.30 9.86 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.483808 TGCATTACAACCAGTCTCACA 57.516 42.857 0.00 0.00 0.00 3.58
2 3 5.420725 ACTATGCATTACAACCAGTCTCA 57.579 39.130 3.54 0.00 0.00 3.27
3 4 7.210174 TGATACTATGCATTACAACCAGTCTC 58.790 38.462 3.54 3.36 0.00 3.36
5 6 7.969536 ATGATACTATGCATTACAACCAGTC 57.030 36.000 3.54 0.00 0.00 3.51
61 62 5.585820 ATGCTATTTTGTGTCATGCATGA 57.414 34.783 25.42 25.42 38.10 3.07
62 63 5.401376 GCTATGCTATTTTGTGTCATGCATG 59.599 40.000 21.07 21.07 39.53 4.06
63 64 5.068067 TGCTATGCTATTTTGTGTCATGCAT 59.932 36.000 0.00 0.00 41.60 3.96
64 65 4.398673 TGCTATGCTATTTTGTGTCATGCA 59.601 37.500 0.00 0.00 0.00 3.96
65 66 4.923893 TGCTATGCTATTTTGTGTCATGC 58.076 39.130 0.00 0.00 0.00 4.06
66 67 7.997107 AAATGCTATGCTATTTTGTGTCATG 57.003 32.000 0.00 0.00 0.00 3.07
114 115 9.558396 AAATGAAGAAAGAGATGATGGAGTATC 57.442 33.333 0.00 0.00 36.29 2.24
117 118 9.917887 ATTAAATGAAGAAAGAGATGATGGAGT 57.082 29.630 0.00 0.00 0.00 3.85
119 120 9.690913 ACATTAAATGAAGAAAGAGATGATGGA 57.309 29.630 0.00 0.00 0.00 3.41
131 132 9.513906 TGAGGTGTCATAACATTAAATGAAGAA 57.486 29.630 0.00 0.00 37.81 2.52
132 133 9.685276 ATGAGGTGTCATAACATTAAATGAAGA 57.315 29.630 0.00 0.00 41.96 2.87
133 134 9.941664 GATGAGGTGTCATAACATTAAATGAAG 57.058 33.333 0.00 0.00 43.92 3.02
134 135 9.460019 TGATGAGGTGTCATAACATTAAATGAA 57.540 29.630 0.00 0.00 43.92 2.57
135 136 9.460019 TTGATGAGGTGTCATAACATTAAATGA 57.540 29.630 0.00 0.00 43.92 2.57
141 142 8.587608 ACAATTTTGATGAGGTGTCATAACATT 58.412 29.630 0.00 0.00 43.92 2.71
142 143 8.125978 ACAATTTTGATGAGGTGTCATAACAT 57.874 30.769 0.00 0.00 43.92 2.71
143 144 7.523293 ACAATTTTGATGAGGTGTCATAACA 57.477 32.000 0.00 0.00 43.92 2.41
144 145 8.816640 AAACAATTTTGATGAGGTGTCATAAC 57.183 30.769 0.00 0.00 43.92 1.89
145 146 9.906660 GTAAACAATTTTGATGAGGTGTCATAA 57.093 29.630 0.00 0.00 43.92 1.90
146 147 9.295825 AGTAAACAATTTTGATGAGGTGTCATA 57.704 29.630 0.00 0.00 43.92 2.15
147 148 8.181904 AGTAAACAATTTTGATGAGGTGTCAT 57.818 30.769 0.00 0.00 46.75 3.06
148 149 7.581213 AGTAAACAATTTTGATGAGGTGTCA 57.419 32.000 0.00 0.00 37.02 3.58
149 150 7.382218 CCAAGTAAACAATTTTGATGAGGTGTC 59.618 37.037 0.00 0.00 0.00 3.67
150 151 7.209475 CCAAGTAAACAATTTTGATGAGGTGT 58.791 34.615 0.00 0.00 0.00 4.16
151 152 6.146021 GCCAAGTAAACAATTTTGATGAGGTG 59.854 38.462 0.00 0.00 0.00 4.00
152 153 6.223120 GCCAAGTAAACAATTTTGATGAGGT 58.777 36.000 0.00 0.00 0.00 3.85
153 154 5.345741 CGCCAAGTAAACAATTTTGATGAGG 59.654 40.000 0.00 0.00 0.00 3.86
154 155 5.920273 ACGCCAAGTAAACAATTTTGATGAG 59.080 36.000 0.00 0.00 0.00 2.90
155 156 5.689514 CACGCCAAGTAAACAATTTTGATGA 59.310 36.000 0.00 0.00 0.00 2.92
156 157 5.612276 GCACGCCAAGTAAACAATTTTGATG 60.612 40.000 0.00 0.00 0.00 3.07
157 158 4.447389 GCACGCCAAGTAAACAATTTTGAT 59.553 37.500 0.00 0.00 0.00 2.57
158 159 3.799420 GCACGCCAAGTAAACAATTTTGA 59.201 39.130 0.00 0.00 0.00 2.69
159 160 3.553511 TGCACGCCAAGTAAACAATTTTG 59.446 39.130 0.00 0.00 0.00 2.44
160 161 3.786635 TGCACGCCAAGTAAACAATTTT 58.213 36.364 0.00 0.00 0.00 1.82
161 162 3.444703 TGCACGCCAAGTAAACAATTT 57.555 38.095 0.00 0.00 0.00 1.82
162 163 3.005261 TCATGCACGCCAAGTAAACAATT 59.995 39.130 0.00 0.00 0.00 2.32
163 164 2.556189 TCATGCACGCCAAGTAAACAAT 59.444 40.909 0.00 0.00 0.00 2.71
164 165 1.950216 TCATGCACGCCAAGTAAACAA 59.050 42.857 0.00 0.00 0.00 2.83
165 166 1.598882 TCATGCACGCCAAGTAAACA 58.401 45.000 0.00 0.00 0.00 2.83
166 167 2.919666 ATCATGCACGCCAAGTAAAC 57.080 45.000 0.00 0.00 0.00 2.01
167 168 3.605634 AGTATCATGCACGCCAAGTAAA 58.394 40.909 0.00 0.00 0.00 2.01
168 169 3.260475 AGTATCATGCACGCCAAGTAA 57.740 42.857 0.00 0.00 0.00 2.24
169 170 2.979814 AGTATCATGCACGCCAAGTA 57.020 45.000 0.00 0.00 0.00 2.24
170 171 2.936498 GTTAGTATCATGCACGCCAAGT 59.064 45.455 0.00 0.00 0.00 3.16
171 172 3.198068 AGTTAGTATCATGCACGCCAAG 58.802 45.455 0.00 0.00 0.00 3.61
172 173 3.260475 AGTTAGTATCATGCACGCCAA 57.740 42.857 0.00 0.00 0.00 4.52
173 174 2.979814 AGTTAGTATCATGCACGCCA 57.020 45.000 0.00 0.00 0.00 5.69
174 175 3.978687 AGTAGTTAGTATCATGCACGCC 58.021 45.455 0.00 0.00 0.00 5.68
175 176 4.916249 GGTAGTAGTTAGTATCATGCACGC 59.084 45.833 0.00 0.00 0.00 5.34
176 177 6.205076 AGAGGTAGTAGTTAGTATCATGCACG 59.795 42.308 0.00 0.00 0.00 5.34
177 178 7.446013 AGAGAGGTAGTAGTTAGTATCATGCAC 59.554 40.741 0.00 0.00 0.00 4.57
178 179 7.519057 AGAGAGGTAGTAGTTAGTATCATGCA 58.481 38.462 0.00 0.00 0.00 3.96
179 180 7.881232 AGAGAGAGGTAGTAGTTAGTATCATGC 59.119 40.741 0.00 0.00 0.00 4.06
180 181 9.431887 GAGAGAGAGGTAGTAGTTAGTATCATG 57.568 40.741 0.00 0.00 0.00 3.07
181 182 9.161572 TGAGAGAGAGGTAGTAGTTAGTATCAT 57.838 37.037 0.00 0.00 0.00 2.45
182 183 8.550280 TGAGAGAGAGGTAGTAGTTAGTATCA 57.450 38.462 0.00 0.00 0.00 2.15
183 184 8.645110 ACTGAGAGAGAGGTAGTAGTTAGTATC 58.355 40.741 0.00 0.00 0.00 2.24
184 185 8.557304 ACTGAGAGAGAGGTAGTAGTTAGTAT 57.443 38.462 0.00 0.00 0.00 2.12
185 186 7.976414 ACTGAGAGAGAGGTAGTAGTTAGTA 57.024 40.000 0.00 0.00 0.00 1.82
186 187 6.879367 ACTGAGAGAGAGGTAGTAGTTAGT 57.121 41.667 0.00 0.00 0.00 2.24
187 188 9.101655 GTAAACTGAGAGAGAGGTAGTAGTTAG 57.898 40.741 0.00 0.00 0.00 2.34
188 189 8.600668 TGTAAACTGAGAGAGAGGTAGTAGTTA 58.399 37.037 0.00 0.00 0.00 2.24
189 190 7.460071 TGTAAACTGAGAGAGAGGTAGTAGTT 58.540 38.462 0.00 0.00 0.00 2.24
190 191 7.018487 TGTAAACTGAGAGAGAGGTAGTAGT 57.982 40.000 0.00 0.00 0.00 2.73
191 192 6.540914 CCTGTAAACTGAGAGAGAGGTAGTAG 59.459 46.154 0.00 0.00 0.00 2.57
192 193 6.416415 CCTGTAAACTGAGAGAGAGGTAGTA 58.584 44.000 0.00 0.00 0.00 1.82
193 194 5.258051 CCTGTAAACTGAGAGAGAGGTAGT 58.742 45.833 0.00 0.00 0.00 2.73
194 195 4.642885 CCCTGTAAACTGAGAGAGAGGTAG 59.357 50.000 0.00 0.00 0.00 3.18
195 196 4.601084 CCCTGTAAACTGAGAGAGAGGTA 58.399 47.826 0.00 0.00 0.00 3.08
196 197 3.436243 CCCTGTAAACTGAGAGAGAGGT 58.564 50.000 0.00 0.00 0.00 3.85
197 198 2.167487 GCCCTGTAAACTGAGAGAGAGG 59.833 54.545 0.00 0.00 0.00 3.69
198 199 2.159310 CGCCCTGTAAACTGAGAGAGAG 60.159 54.545 0.00 0.00 0.00 3.20
199 200 1.819288 CGCCCTGTAAACTGAGAGAGA 59.181 52.381 0.00 0.00 0.00 3.10
200 201 1.546476 ACGCCCTGTAAACTGAGAGAG 59.454 52.381 0.00 0.00 0.00 3.20
201 202 1.272490 CACGCCCTGTAAACTGAGAGA 59.728 52.381 0.00 0.00 0.00 3.10
202 203 1.714794 CACGCCCTGTAAACTGAGAG 58.285 55.000 0.00 0.00 0.00 3.20
203 204 0.320421 GCACGCCCTGTAAACTGAGA 60.320 55.000 0.00 0.00 0.00 3.27
204 205 1.626654 CGCACGCCCTGTAAACTGAG 61.627 60.000 0.00 0.00 0.00 3.35
205 206 1.666553 CGCACGCCCTGTAAACTGA 60.667 57.895 0.00 0.00 0.00 3.41
206 207 1.959226 ACGCACGCCCTGTAAACTG 60.959 57.895 0.00 0.00 0.00 3.16
207 208 1.959226 CACGCACGCCCTGTAAACT 60.959 57.895 0.00 0.00 0.00 2.66
208 209 0.945265 TACACGCACGCCCTGTAAAC 60.945 55.000 0.00 0.00 0.00 2.01
209 210 0.037139 ATACACGCACGCCCTGTAAA 60.037 50.000 0.00 0.00 0.00 2.01
210 211 0.458889 GATACACGCACGCCCTGTAA 60.459 55.000 0.00 0.00 0.00 2.41
211 212 1.140161 GATACACGCACGCCCTGTA 59.860 57.895 0.00 0.00 0.00 2.74
212 213 2.125673 GATACACGCACGCCCTGT 60.126 61.111 0.00 0.00 0.00 4.00
213 214 2.890474 GGATACACGCACGCCCTG 60.890 66.667 0.00 0.00 0.00 4.45
214 215 4.157120 GGGATACACGCACGCCCT 62.157 66.667 0.00 0.00 35.86 5.19
215 216 2.694829 CTAGGGATACACGCACGCCC 62.695 65.000 0.00 0.00 39.12 6.13
216 217 1.299926 CTAGGGATACACGCACGCC 60.300 63.158 0.00 0.00 39.74 5.68
217 218 0.314302 ATCTAGGGATACACGCACGC 59.686 55.000 0.00 0.00 39.74 5.34
218 219 2.795175 AATCTAGGGATACACGCACG 57.205 50.000 0.00 0.00 39.74 5.34
219 220 5.386958 TGATAATCTAGGGATACACGCAC 57.613 43.478 0.00 0.00 39.74 5.34
220 221 6.605471 ATTGATAATCTAGGGATACACGCA 57.395 37.500 0.00 0.00 39.74 5.24
221 222 7.907214 AAATTGATAATCTAGGGATACACGC 57.093 36.000 0.00 0.00 39.74 5.34
227 228 9.588096 GGTTGGTTAAATTGATAATCTAGGGAT 57.412 33.333 0.00 0.00 0.00 3.85
228 229 8.787818 AGGTTGGTTAAATTGATAATCTAGGGA 58.212 33.333 0.00 0.00 0.00 4.20
229 230 8.996651 AGGTTGGTTAAATTGATAATCTAGGG 57.003 34.615 0.00 0.00 0.00 3.53
237 238 9.357161 ACTTGTGTTAGGTTGGTTAAATTGATA 57.643 29.630 0.00 0.00 0.00 2.15
238 239 8.245195 ACTTGTGTTAGGTTGGTTAAATTGAT 57.755 30.769 0.00 0.00 0.00 2.57
239 240 7.339721 TGACTTGTGTTAGGTTGGTTAAATTGA 59.660 33.333 0.00 0.00 0.00 2.57
240 241 7.484975 TGACTTGTGTTAGGTTGGTTAAATTG 58.515 34.615 0.00 0.00 0.00 2.32
241 242 7.648039 TGACTTGTGTTAGGTTGGTTAAATT 57.352 32.000 0.00 0.00 0.00 1.82
242 243 7.833285 ATGACTTGTGTTAGGTTGGTTAAAT 57.167 32.000 0.00 0.00 0.00 1.40
243 244 8.927675 ATATGACTTGTGTTAGGTTGGTTAAA 57.072 30.769 0.00 0.00 0.00 1.52
245 246 9.826574 GATATATGACTTGTGTTAGGTTGGTTA 57.173 33.333 0.00 0.00 0.00 2.85
246 247 8.325787 TGATATATGACTTGTGTTAGGTTGGTT 58.674 33.333 0.00 0.00 0.00 3.67
247 248 7.769044 GTGATATATGACTTGTGTTAGGTTGGT 59.231 37.037 0.00 0.00 0.00 3.67
248 249 7.768582 TGTGATATATGACTTGTGTTAGGTTGG 59.231 37.037 3.92 0.00 0.00 3.77
249 250 8.716646 TGTGATATATGACTTGTGTTAGGTTG 57.283 34.615 3.92 0.00 0.00 3.77
250 251 9.733556 TTTGTGATATATGACTTGTGTTAGGTT 57.266 29.630 3.92 0.00 0.00 3.50
251 252 9.733556 TTTTGTGATATATGACTTGTGTTAGGT 57.266 29.630 3.92 0.00 0.00 3.08
275 276 5.354234 CAGGCTGGTCGTAATGATAGTTTTT 59.646 40.000 6.61 0.00 0.00 1.94
276 277 4.876107 CAGGCTGGTCGTAATGATAGTTTT 59.124 41.667 6.61 0.00 0.00 2.43
277 278 4.161565 TCAGGCTGGTCGTAATGATAGTTT 59.838 41.667 15.73 0.00 0.00 2.66
278 279 3.704566 TCAGGCTGGTCGTAATGATAGTT 59.295 43.478 15.73 0.00 0.00 2.24
279 280 3.296854 TCAGGCTGGTCGTAATGATAGT 58.703 45.455 15.73 0.00 0.00 2.12
280 281 3.858877 GCTCAGGCTGGTCGTAATGATAG 60.859 52.174 15.73 0.71 35.22 2.08
281 282 2.035961 GCTCAGGCTGGTCGTAATGATA 59.964 50.000 15.73 0.00 35.22 2.15
282 283 1.202580 GCTCAGGCTGGTCGTAATGAT 60.203 52.381 15.73 0.00 35.22 2.45
283 284 0.175760 GCTCAGGCTGGTCGTAATGA 59.824 55.000 15.73 0.00 35.22 2.57
284 285 0.811616 GGCTCAGGCTGGTCGTAATG 60.812 60.000 15.73 0.00 38.73 1.90
285 286 1.264749 TGGCTCAGGCTGGTCGTAAT 61.265 55.000 15.73 0.00 38.73 1.89
286 287 1.911269 TGGCTCAGGCTGGTCGTAA 60.911 57.895 15.73 0.00 38.73 3.18
287 288 2.283604 TGGCTCAGGCTGGTCGTA 60.284 61.111 15.73 0.00 38.73 3.43
288 289 4.008933 GTGGCTCAGGCTGGTCGT 62.009 66.667 15.73 0.00 38.73 4.34
289 290 4.007644 TGTGGCTCAGGCTGGTCG 62.008 66.667 15.73 4.87 38.73 4.79
290 291 2.359230 GTGTGGCTCAGGCTGGTC 60.359 66.667 15.73 7.65 38.73 4.02
291 292 1.999634 AAAGTGTGGCTCAGGCTGGT 62.000 55.000 15.73 0.00 38.73 4.00
292 293 1.228367 AAAGTGTGGCTCAGGCTGG 60.228 57.895 15.73 6.64 38.73 4.85
293 294 1.954528 CAAAGTGTGGCTCAGGCTG 59.045 57.895 8.58 8.58 38.73 4.85
294 295 1.900498 GCAAAGTGTGGCTCAGGCT 60.900 57.895 0.00 0.00 38.73 4.58
295 296 2.647297 GCAAAGTGTGGCTCAGGC 59.353 61.111 0.00 0.00 37.82 4.85
302 303 2.393271 CCTCTAGAGGCAAAGTGTGG 57.607 55.000 25.73 0.00 42.44 4.17
313 314 2.257691 TGTAGCCGTAGCCTCTAGAG 57.742 55.000 13.18 13.18 41.25 2.43
314 315 2.092538 ACTTGTAGCCGTAGCCTCTAGA 60.093 50.000 0.00 0.00 41.25 2.43
315 316 2.299521 ACTTGTAGCCGTAGCCTCTAG 58.700 52.381 0.00 0.00 41.25 2.43
316 317 2.431954 ACTTGTAGCCGTAGCCTCTA 57.568 50.000 0.00 0.00 41.25 2.43
317 318 2.092538 TCTACTTGTAGCCGTAGCCTCT 60.093 50.000 3.10 0.00 41.25 3.69
318 319 2.291190 CTCTACTTGTAGCCGTAGCCTC 59.709 54.545 3.10 0.00 41.25 4.70
319 320 2.299521 CTCTACTTGTAGCCGTAGCCT 58.700 52.381 3.10 0.00 41.25 4.58
320 321 1.337387 CCTCTACTTGTAGCCGTAGCC 59.663 57.143 3.10 0.00 41.25 3.93
321 322 2.022934 ACCTCTACTTGTAGCCGTAGC 58.977 52.381 3.10 0.00 34.52 3.58
322 323 4.450053 ACTACCTCTACTTGTAGCCGTAG 58.550 47.826 20.21 20.21 38.38 3.51
323 324 4.494091 ACTACCTCTACTTGTAGCCGTA 57.506 45.455 3.10 5.24 38.38 4.02
324 325 3.362870 ACTACCTCTACTTGTAGCCGT 57.637 47.619 3.10 4.47 38.38 5.68
325 326 4.450053 ACTACTACCTCTACTTGTAGCCG 58.550 47.826 3.10 0.00 38.38 5.52
326 327 6.482973 CACTACTACTACCTCTACTTGTAGCC 59.517 46.154 3.10 0.00 38.38 3.93
327 328 7.047271 ACACTACTACTACCTCTACTTGTAGC 58.953 42.308 3.10 0.00 38.38 3.58
339 340 2.941720 CTCACCGGACACTACTACTACC 59.058 54.545 9.46 0.00 0.00 3.18
341 342 2.238144 AGCTCACCGGACACTACTACTA 59.762 50.000 9.46 0.00 0.00 1.82
354 355 2.253603 GCAAAGCAATAAAGCTCACCG 58.746 47.619 0.00 0.00 45.89 4.94
357 358 4.309099 CTTTGGCAAAGCAATAAAGCTCA 58.691 39.130 25.46 0.00 45.89 4.26
388 389 0.609957 CCAGAAGCAGTCAATGGGCA 60.610 55.000 0.00 0.00 0.00 5.36
441 442 5.447548 GCCGTGTGATTTAAGCGGTTTATTA 60.448 40.000 4.64 0.00 43.78 0.98
496 497 2.969238 CGATGCGAGTGGGATGGC 60.969 66.667 0.00 0.00 0.00 4.40
602 605 1.185315 GGTGGTTTGGATGTGGATGG 58.815 55.000 0.00 0.00 0.00 3.51
648 651 1.639298 GATGGAAGTCTGCGGTGTGC 61.639 60.000 0.00 0.00 46.70 4.57
661 664 4.812476 CTGCGCGGGTCGATGGAA 62.812 66.667 8.83 0.00 41.67 3.53
967 1016 3.036959 TCCCTCTCCCCTCCCCTC 61.037 72.222 0.00 0.00 0.00 4.30
968 1017 3.039526 CTCCCTCTCCCCTCCCCT 61.040 72.222 0.00 0.00 0.00 4.79
969 1018 4.179599 CCTCCCTCTCCCCTCCCC 62.180 77.778 0.00 0.00 0.00 4.81
970 1019 4.179599 CCCTCCCTCTCCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
971 1020 4.179599 CCCCTCCCTCTCCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
1098 1154 5.272283 TCCTTAAATAGCACCGGAAGTAG 57.728 43.478 9.46 0.00 0.00 2.57
1099 1155 4.100498 CCTCCTTAAATAGCACCGGAAGTA 59.900 45.833 9.46 0.00 0.00 2.24
1100 1156 3.118371 CCTCCTTAAATAGCACCGGAAGT 60.118 47.826 9.46 0.00 0.00 3.01
1101 1157 3.134081 TCCTCCTTAAATAGCACCGGAAG 59.866 47.826 9.46 0.15 0.00 3.46
1102 1158 3.109151 TCCTCCTTAAATAGCACCGGAA 58.891 45.455 9.46 0.00 0.00 4.30
1103 1159 2.698797 CTCCTCCTTAAATAGCACCGGA 59.301 50.000 9.46 0.00 0.00 5.14
1104 1160 2.224305 CCTCCTCCTTAAATAGCACCGG 60.224 54.545 0.00 0.00 0.00 5.28
1105 1161 2.698797 TCCTCCTCCTTAAATAGCACCG 59.301 50.000 0.00 0.00 0.00 4.94
1106 1162 3.071747 CCTCCTCCTCCTTAAATAGCACC 59.928 52.174 0.00 0.00 0.00 5.01
1107 1163 3.495276 GCCTCCTCCTCCTTAAATAGCAC 60.495 52.174 0.00 0.00 0.00 4.40
1108 1164 2.706190 GCCTCCTCCTCCTTAAATAGCA 59.294 50.000 0.00 0.00 0.00 3.49
1199 1260 1.919600 AATGGCAGCTCCCCAGAGTC 61.920 60.000 8.48 0.00 42.59 3.36
1200 1261 0.621571 TAATGGCAGCTCCCCAGAGT 60.622 55.000 8.48 0.40 42.59 3.24
1203 1264 1.097547 CGTTAATGGCAGCTCCCCAG 61.098 60.000 8.48 0.00 35.48 4.45
1204 1265 1.077787 CGTTAATGGCAGCTCCCCA 60.078 57.895 5.16 5.16 36.66 4.96
1205 1266 2.481471 GCGTTAATGGCAGCTCCCC 61.481 63.158 0.00 0.00 0.00 4.81
1338 1404 2.510948 CGAATCGAGCAGAATCGGG 58.489 57.895 0.00 0.00 45.70 5.14
1511 1577 2.419297 CCCCTGAGAATGAAAGACGAGG 60.419 54.545 0.00 0.00 0.00 4.63
1577 1649 0.240945 AGCAAGAAATTTCCACCGCG 59.759 50.000 14.61 0.00 0.00 6.46
1641 1713 4.789012 TGGAGTTTGCTCAAATCAATCC 57.211 40.909 0.00 5.48 43.37 3.01
1660 1732 5.702670 ACTGAACACAGACAATAACAGATGG 59.297 40.000 0.00 0.00 35.80 3.51
1700 1772 5.073311 TCTATTCCAGTACAGCACAAGAC 57.927 43.478 0.00 0.00 0.00 3.01
1724 1796 0.178981 ACCCACAGAAACAGCAGCAT 60.179 50.000 0.00 0.00 0.00 3.79
1725 1797 0.472044 TACCCACAGAAACAGCAGCA 59.528 50.000 0.00 0.00 0.00 4.41
1726 1798 1.604604 TTACCCACAGAAACAGCAGC 58.395 50.000 0.00 0.00 0.00 5.25
1727 1799 2.554032 CCTTTACCCACAGAAACAGCAG 59.446 50.000 0.00 0.00 0.00 4.24
1732 1804 5.601583 TTTTTCCCTTTACCCACAGAAAC 57.398 39.130 0.00 0.00 0.00 2.78
1736 1808 5.799827 TGAATTTTTCCCTTTACCCACAG 57.200 39.130 0.00 0.00 0.00 3.66
1754 1826 6.095440 GTGCCCACTAATGTAACTGAATGAAT 59.905 38.462 0.00 0.00 0.00 2.57
1814 1886 2.392662 TGAGATTCTCGCCATCTTCCT 58.607 47.619 9.07 0.00 30.70 3.36
1825 1897 7.542025 ACAAATGCTACCAATTTGAGATTCTC 58.458 34.615 14.06 6.73 38.32 2.87
1844 1916 4.265282 CCGCAGGCCAAACAAATG 57.735 55.556 5.01 0.00 46.14 2.32
1897 1969 7.928873 TCCTACTTTGGGATATTTCTTGTCTT 58.071 34.615 0.00 0.00 0.00 3.01
1917 1989 4.192317 CAATTCAGCTACCCAACTCCTAC 58.808 47.826 0.00 0.00 0.00 3.18
1982 2055 8.098912 TCTACCCTGTCCAATAAGAAAGTAAAC 58.901 37.037 0.00 0.00 0.00 2.01
2000 2073 6.693315 TCACTGTTTTCTTTTTCTACCCTG 57.307 37.500 0.00 0.00 0.00 4.45
2007 2080 9.387123 GACTACATCATCACTGTTTTCTTTTTC 57.613 33.333 0.00 0.00 0.00 2.29
2012 2085 7.164122 ACATGACTACATCATCACTGTTTTCT 58.836 34.615 0.00 0.00 45.52 2.52
2013 2086 7.369803 ACATGACTACATCATCACTGTTTTC 57.630 36.000 0.00 0.00 45.52 2.29
2025 2098 6.043411 GGTGTCCTTTCTACATGACTACATC 58.957 44.000 0.00 0.00 34.15 3.06
2046 2122 0.536460 AAAACTACCCAGCACCGGTG 60.536 55.000 30.66 30.66 34.66 4.94
2077 2155 2.033299 ACGCAACTTTGTCCATCAACTG 59.967 45.455 0.00 0.00 35.61 3.16
2078 2156 2.297701 ACGCAACTTTGTCCATCAACT 58.702 42.857 0.00 0.00 35.61 3.16
2097 2175 7.429636 TGTATTAACACCTTCACTTTGCTAC 57.570 36.000 0.00 0.00 0.00 3.58
2133 2214 1.985473 ATTGAACAGCTCCAGTGCAA 58.015 45.000 0.00 0.00 38.79 4.08
2224 2689 2.938451 TGCAGAGATCAAAGGTATTGCG 59.062 45.455 0.00 0.00 33.25 4.85
2359 2824 9.323985 CCTTTAACCTTTCTTCTCTCTGATATG 57.676 37.037 0.00 0.00 0.00 1.78
2383 2848 0.106015 AGCTGAAACAAACAGGGCCT 60.106 50.000 0.00 0.00 36.09 5.19
2415 2880 1.522668 CCAGTGAAGCGAATCCACAA 58.477 50.000 0.00 0.00 33.53 3.33
2569 3034 5.814705 CAGCAGATTCTCGTAGGAAAAATCT 59.185 40.000 13.18 13.18 37.20 2.40
3131 3639 5.246203 ACAGTAAGCAAGAGTTATCACAGGA 59.754 40.000 0.00 0.00 0.00 3.86
3231 3739 8.469200 TGGGAATTCTGAAAATACAAGCTTATG 58.531 33.333 5.23 0.00 0.00 1.90
3717 4225 8.379161 CGAGAATAACAAATCTCAGAAGTTCAG 58.621 37.037 5.50 0.00 41.73 3.02
3854 4362 3.558829 CACAATCTCCAGAATCATCACCG 59.441 47.826 0.00 0.00 0.00 4.94
3917 4425 1.062488 AAGGTCCAGAGCAAGGTGGT 61.062 55.000 0.00 0.00 35.14 4.16
4048 4556 3.701205 TGCCACTGTCATTATCACTGT 57.299 42.857 0.00 0.00 0.00 3.55
4276 4784 4.640647 ACATCAAGACGTATAGTGCTCTGA 59.359 41.667 0.00 0.00 0.00 3.27
4325 4835 7.727578 TGGTACATTCTTGTAGAGGTCATAA 57.272 36.000 0.00 0.00 38.98 1.90
4327 4837 6.620877 TTGGTACATTCTTGTAGAGGTCAT 57.379 37.500 0.00 0.00 38.98 3.06
4362 4872 3.181439 GGGCCAAATAATCTAGAGGCAGT 60.181 47.826 17.42 0.00 43.72 4.40
4436 4946 3.243367 TGTTCAGAAAAAGCATGGTTCCG 60.243 43.478 11.16 0.00 0.00 4.30
4438 4948 6.849588 AATTGTTCAGAAAAAGCATGGTTC 57.150 33.333 11.16 0.00 0.00 3.62
4441 4951 5.759273 TGGAAATTGTTCAGAAAAAGCATGG 59.241 36.000 0.00 0.00 35.25 3.66
4481 4991 6.553524 AGTAGCACGTACAATCTTAAGAGAC 58.446 40.000 11.53 5.59 32.21 3.36
4670 5198 1.617322 ATGGCCACATGATCATCTGC 58.383 50.000 8.16 8.52 35.57 4.26
4727 5257 9.166173 CAGATCATTTTGGAGATTACAGTAACA 57.834 33.333 0.00 0.00 0.00 2.41
4743 5273 8.603181 CAAACGGAAAAAGAAACAGATCATTTT 58.397 29.630 0.00 0.00 34.11 1.82
4790 5326 9.696917 ATTGGCTGCAGTAAATAAATTATTAGC 57.303 29.630 16.64 3.49 0.00 3.09
4797 5355 8.480501 AGATTGAATTGGCTGCAGTAAATAAAT 58.519 29.630 16.64 16.20 0.00 1.40
5012 5595 1.565759 CCAGAGTGATCCCCAAATGGA 59.434 52.381 0.00 0.00 39.18 3.41
5060 5643 1.332375 TCACTAGGCGTGCAAACAAAC 59.668 47.619 0.00 0.00 43.46 2.93
5071 5654 5.108385 ACTTGAAAAACAATCACTAGGCG 57.892 39.130 0.00 0.00 37.88 5.52
5279 5866 2.885135 AGCATGGGTGTTCTCATCAA 57.115 45.000 0.00 0.00 0.00 2.57
5280 5867 2.885135 AAGCATGGGTGTTCTCATCA 57.115 45.000 0.00 0.00 0.00 3.07
5281 5868 3.760684 AGAAAAGCATGGGTGTTCTCATC 59.239 43.478 0.00 0.00 32.94 2.92
5282 5869 3.508793 CAGAAAAGCATGGGTGTTCTCAT 59.491 43.478 0.00 0.00 35.71 2.90
5283 5870 2.886523 CAGAAAAGCATGGGTGTTCTCA 59.113 45.455 0.00 0.00 35.71 3.27
5284 5871 3.149196 TCAGAAAAGCATGGGTGTTCTC 58.851 45.455 0.00 0.00 35.71 2.87
5285 5872 3.152341 CTCAGAAAAGCATGGGTGTTCT 58.848 45.455 0.00 0.00 38.01 3.01
5286 5873 2.887152 ACTCAGAAAAGCATGGGTGTTC 59.113 45.455 0.00 0.00 0.00 3.18
5287 5874 2.949447 ACTCAGAAAAGCATGGGTGTT 58.051 42.857 0.00 0.00 0.00 3.32
5288 5875 2.664402 ACTCAGAAAAGCATGGGTGT 57.336 45.000 0.00 0.00 0.00 4.16
5289 5876 2.886523 TGAACTCAGAAAAGCATGGGTG 59.113 45.455 0.00 0.00 28.32 4.61
5290 5877 3.228188 TGAACTCAGAAAAGCATGGGT 57.772 42.857 0.00 0.00 0.00 4.51
5291 5878 4.946157 AGTATGAACTCAGAAAAGCATGGG 59.054 41.667 0.00 0.00 0.00 4.00
5292 5879 6.506500 AAGTATGAACTCAGAAAAGCATGG 57.493 37.500 0.00 0.00 33.75 3.66
5293 5880 7.540055 GGAAAAGTATGAACTCAGAAAAGCATG 59.460 37.037 0.00 0.00 33.75 4.06
5294 5881 7.449704 AGGAAAAGTATGAACTCAGAAAAGCAT 59.550 33.333 0.00 0.00 33.75 3.79
5311 5907 4.953579 ACAAGCCAGTTTGAAGGAAAAGTA 59.046 37.500 0.97 0.00 0.00 2.24
5406 6006 4.578871 TGCAGCATGTAGTCACAATTAGT 58.421 39.130 0.00 0.00 38.42 2.24
5607 6207 6.389869 TGATACAGAGGGGGTATTTCATTTCT 59.610 38.462 0.00 0.00 31.84 2.52
5714 6421 5.592054 CCAGTTCTCAGGGTTTTCTTTTTC 58.408 41.667 0.00 0.00 0.00 2.29
5720 6427 1.981256 TGCCAGTTCTCAGGGTTTTC 58.019 50.000 0.00 0.00 0.00 2.29
5843 6905 6.200100 GCTTGCATAGCTACGACGTATATAT 58.800 40.000 8.39 7.16 46.77 0.86
5844 6906 5.566623 GCTTGCATAGCTACGACGTATATA 58.433 41.667 8.39 5.09 46.77 0.86
5845 6907 4.413087 GCTTGCATAGCTACGACGTATAT 58.587 43.478 8.39 1.81 46.77 0.86
5846 6908 3.818387 GCTTGCATAGCTACGACGTATA 58.182 45.455 8.39 0.00 46.77 1.47
5847 6909 2.662700 GCTTGCATAGCTACGACGTAT 58.337 47.619 8.39 0.00 46.77 3.06
6007 7130 1.717194 TTAACGAGGAATGTGGACGC 58.283 50.000 0.00 0.00 0.00 5.19
6009 7132 6.084277 GTCAATTTTAACGAGGAATGTGGAC 58.916 40.000 0.00 0.00 0.00 4.02
6020 7143 5.987777 TGTTTCCTCGTCAATTTTAACGA 57.012 34.783 7.13 7.13 44.91 3.85
6021 7144 6.140110 ACATGTTTCCTCGTCAATTTTAACG 58.860 36.000 0.00 0.00 40.17 3.18
6022 7145 8.287503 AGTACATGTTTCCTCGTCAATTTTAAC 58.712 33.333 2.30 0.00 0.00 2.01
6023 7146 8.286800 CAGTACATGTTTCCTCGTCAATTTTAA 58.713 33.333 2.30 0.00 0.00 1.52
6024 7147 7.658167 TCAGTACATGTTTCCTCGTCAATTTTA 59.342 33.333 2.30 0.00 0.00 1.52
6025 7148 6.485313 TCAGTACATGTTTCCTCGTCAATTTT 59.515 34.615 2.30 0.00 0.00 1.82
6026 7149 5.995282 TCAGTACATGTTTCCTCGTCAATTT 59.005 36.000 2.30 0.00 0.00 1.82
6027 7150 5.547465 TCAGTACATGTTTCCTCGTCAATT 58.453 37.500 2.30 0.00 0.00 2.32
6028 7151 5.147330 TCAGTACATGTTTCCTCGTCAAT 57.853 39.130 2.30 0.00 0.00 2.57
6031 7154 6.307155 CAAATTCAGTACATGTTTCCTCGTC 58.693 40.000 2.30 0.00 0.00 4.20
6238 7402 3.448301 ACACCGATTACGATTAGGGTTCA 59.552 43.478 0.00 0.00 42.66 3.18
6312 7477 8.589629 CGACTAATGTACATTTACAGTTGTACC 58.410 37.037 25.31 9.99 44.82 3.34
6486 7656 9.341078 AGACGGGAAAACTTTTAATAACACTAA 57.659 29.630 0.00 0.00 0.00 2.24
6492 7662 6.999871 ACCTGAGACGGGAAAACTTTTAATAA 59.000 34.615 3.48 0.00 33.36 1.40
6546 7716 2.632512 TCCTTTTGTTTTGGCCCATCTC 59.367 45.455 0.00 0.00 0.00 2.75
6594 7764 5.278957 GGAGCCAAGCATTTGAGTCTTAAAA 60.279 40.000 0.00 0.00 36.36 1.52
6620 7790 2.573340 CCATCTTTGGGCGTTGGC 59.427 61.111 0.00 0.00 39.56 4.52
6628 7798 3.258872 TCAAACATGAAGCCCATCTTTGG 59.741 43.478 0.00 0.00 39.83 3.28
6643 7819 4.566545 TGTCGTCAGCAAAATCAAACAT 57.433 36.364 0.00 0.00 0.00 2.71
6645 7821 4.148696 CCATTGTCGTCAGCAAAATCAAAC 59.851 41.667 0.00 0.00 0.00 2.93
6664 7840 0.252479 CTGCTGCTCTGACCTCCATT 59.748 55.000 0.00 0.00 0.00 3.16
6667 7843 1.079266 CACTGCTGCTCTGACCTCC 60.079 63.158 0.00 0.00 0.00 4.30
6682 7858 2.788786 CGCAAGAATTTTTCGCAACACT 59.211 40.909 0.00 0.00 43.02 3.55
6692 7868 1.601914 GGACCGCAACGCAAGAATTTT 60.602 47.619 0.00 0.00 43.62 1.82
6696 7872 1.098712 AAAGGACCGCAACGCAAGAA 61.099 50.000 0.00 0.00 43.62 2.52
6709 7885 7.687941 TGTCTCATGGAAAATCTAAAAGGAC 57.312 36.000 0.00 0.00 0.00 3.85
6745 7921 0.112995 ACAGGAAGGCCATTGCTTCA 59.887 50.000 5.01 0.00 37.50 3.02
6783 8051 0.178767 AGCATGCTGGCATAAGACGA 59.821 50.000 21.98 0.00 34.91 4.20
6790 8058 1.211212 TCAGTTCTAGCATGCTGGCAT 59.789 47.619 30.42 13.00 37.08 4.40
6793 8061 3.806380 AGATTCAGTTCTAGCATGCTGG 58.194 45.455 30.42 27.16 0.00 4.85
6803 8071 3.265221 TGGAGGCATGAAGATTCAGTTCT 59.735 43.478 0.00 0.00 41.08 3.01
6827 8095 3.593442 TTCAAGACCACTCCCAATGTT 57.407 42.857 0.00 0.00 0.00 2.71
6856 8124 0.681887 TGGAACGAGATCACCGCCTA 60.682 55.000 7.33 0.00 0.00 3.93
6881 8149 3.695830 TCCAACGTAGATTTTCTGCCT 57.304 42.857 0.00 0.00 0.00 4.75
6893 8161 2.853705 CCCACCTTCTTTTCCAACGTA 58.146 47.619 0.00 0.00 0.00 3.57
6896 8164 1.341209 CTGCCCACCTTCTTTTCCAAC 59.659 52.381 0.00 0.00 0.00 3.77
6963 8231 5.514279 GTTAATTCTTCATTGCCGAGATGG 58.486 41.667 0.00 0.00 42.50 3.51
6964 8232 5.006649 TCGTTAATTCTTCATTGCCGAGATG 59.993 40.000 0.00 0.00 0.00 2.90
6965 8233 5.116180 TCGTTAATTCTTCATTGCCGAGAT 58.884 37.500 0.00 0.00 0.00 2.75
6966 8234 4.500127 TCGTTAATTCTTCATTGCCGAGA 58.500 39.130 0.00 0.00 0.00 4.04
6967 8235 4.260375 CCTCGTTAATTCTTCATTGCCGAG 60.260 45.833 0.00 0.00 41.50 4.63
6968 8236 3.621268 CCTCGTTAATTCTTCATTGCCGA 59.379 43.478 0.00 0.00 31.41 5.54
6972 8260 6.611381 TCTTTGCCTCGTTAATTCTTCATTG 58.389 36.000 0.00 0.00 0.00 2.82
6973 8261 6.817765 TCTTTGCCTCGTTAATTCTTCATT 57.182 33.333 0.00 0.00 0.00 2.57
6986 8274 4.164822 ACAACATCAATTCTTTGCCTCG 57.835 40.909 0.00 0.00 32.61 4.63
6987 8275 5.098211 GCTACAACATCAATTCTTTGCCTC 58.902 41.667 0.00 0.00 32.61 4.70
7019 8307 4.986034 CAGAAATGTTGATGTGTGCAATGT 59.014 37.500 0.00 0.00 0.00 2.71
7022 8310 3.181478 TGCAGAAATGTTGATGTGTGCAA 60.181 39.130 0.00 0.00 41.85 4.08
7135 8424 5.412594 CGAGAGGGAATTCAAAAGTTGATCA 59.587 40.000 7.93 0.00 39.84 2.92
7141 8430 3.077359 CAGCGAGAGGGAATTCAAAAGT 58.923 45.455 7.93 0.00 0.00 2.66
7149 8438 0.392336 GATCTGCAGCGAGAGGGAAT 59.608 55.000 9.47 0.00 0.00 3.01
7159 8448 3.699411 AGAATAGATGGGATCTGCAGC 57.301 47.619 9.47 0.00 40.51 5.25
7160 8449 5.002516 GGAAAGAATAGATGGGATCTGCAG 58.997 45.833 7.63 7.63 40.51 4.41
7189 8478 1.982938 AGCAGGAGTACCGGACACC 60.983 63.158 9.46 10.43 41.83 4.16
7195 8484 0.102481 ATTACGCAGCAGGAGTACCG 59.898 55.000 0.00 0.00 41.83 4.02
7196 8485 1.409427 AGATTACGCAGCAGGAGTACC 59.591 52.381 0.00 0.00 31.11 3.34
7198 8487 1.202417 GCAGATTACGCAGCAGGAGTA 60.202 52.381 0.00 0.00 0.00 2.59
7199 8488 0.460987 GCAGATTACGCAGCAGGAGT 60.461 55.000 0.00 0.00 0.00 3.85
7200 8489 0.460811 TGCAGATTACGCAGCAGGAG 60.461 55.000 0.00 0.00 33.55 3.69
7202 8491 1.020861 TGTGCAGATTACGCAGCAGG 61.021 55.000 0.00 0.00 40.78 4.85
7203 8492 1.012086 ATGTGCAGATTACGCAGCAG 58.988 50.000 0.00 0.00 40.78 4.24
7205 8494 0.028505 CCATGTGCAGATTACGCAGC 59.971 55.000 0.00 0.00 40.78 5.25
7208 8497 2.487934 AGATCCATGTGCAGATTACGC 58.512 47.619 0.00 0.00 0.00 4.42
7210 8499 5.468072 CACCTTAGATCCATGTGCAGATTAC 59.532 44.000 0.00 0.00 0.00 1.89
7211 8500 5.455183 CCACCTTAGATCCATGTGCAGATTA 60.455 44.000 0.00 0.00 0.00 1.75
7212 8501 4.458397 CACCTTAGATCCATGTGCAGATT 58.542 43.478 0.00 0.00 0.00 2.40
7213 8502 3.181447 CCACCTTAGATCCATGTGCAGAT 60.181 47.826 0.00 0.00 0.00 2.90
7214 8503 2.171237 CCACCTTAGATCCATGTGCAGA 59.829 50.000 0.00 0.00 0.00 4.26
7215 8504 2.569059 CCACCTTAGATCCATGTGCAG 58.431 52.381 0.00 0.00 0.00 4.41
7226 8518 0.323302 TGATGCAACGCCACCTTAGA 59.677 50.000 0.00 0.00 0.00 2.10
7227 8519 0.447801 GTGATGCAACGCCACCTTAG 59.552 55.000 0.00 0.00 0.00 2.18
7257 8549 3.179925 CATATGCATATGCCCGGCT 57.820 52.632 28.81 7.08 41.18 5.52
7300 8594 2.581409 CGCGTGGATCCGTGTACC 60.581 66.667 7.39 0.00 33.84 3.34
7327 8621 1.452651 ATGATGCCTGGACCTTGCG 60.453 57.895 0.00 0.00 0.00 4.85
7333 8629 0.034186 TGGAACCATGATGCCTGGAC 60.034 55.000 0.00 0.00 37.22 4.02
7336 8632 1.843368 ACTTGGAACCATGATGCCTG 58.157 50.000 12.54 0.00 0.00 4.85
7352 8648 4.314740 TTGTTTCGCCATGCTAAAACTT 57.685 36.364 12.99 0.00 34.93 2.66
7353 8649 4.022416 TGATTGTTTCGCCATGCTAAAACT 60.022 37.500 12.99 0.00 34.93 2.66
7356 8652 3.832276 GTGATTGTTTCGCCATGCTAAA 58.168 40.909 0.00 0.00 0.00 1.85
7357 8653 3.485947 GTGATTGTTTCGCCATGCTAA 57.514 42.857 0.00 0.00 0.00 3.09
7365 8661 2.927477 TCTGTATCGGTGATTGTTTCGC 59.073 45.455 0.00 0.00 0.00 4.70
7366 8662 4.625742 ACTTCTGTATCGGTGATTGTTTCG 59.374 41.667 0.00 0.00 0.00 3.46
7369 8665 5.547465 TGAACTTCTGTATCGGTGATTGTT 58.453 37.500 0.00 0.00 0.00 2.83
7371 8667 5.171476 ACTGAACTTCTGTATCGGTGATTG 58.829 41.667 0.00 0.00 31.67 2.67
7372 8668 5.407407 ACTGAACTTCTGTATCGGTGATT 57.593 39.130 0.00 0.00 31.67 2.57
7377 8691 3.927142 GGTTCACTGAACTTCTGTATCGG 59.073 47.826 19.14 0.00 41.70 4.18
7383 8697 3.679980 CGTATGGGTTCACTGAACTTCTG 59.320 47.826 19.14 4.18 41.70 3.02
7387 8703 1.346395 TGCGTATGGGTTCACTGAACT 59.654 47.619 19.14 4.93 41.70 3.01
7393 8709 0.673644 ACAGCTGCGTATGGGTTCAC 60.674 55.000 15.27 0.00 0.00 3.18
7404 8720 0.438830 GTCGGTTTCTAACAGCTGCG 59.561 55.000 15.27 6.70 0.00 5.18
7405 8721 0.438830 CGTCGGTTTCTAACAGCTGC 59.561 55.000 15.27 0.00 0.00 5.25
7406 8722 1.068474 CCGTCGGTTTCTAACAGCTG 58.932 55.000 13.48 13.48 0.00 4.24
7407 8723 0.963962 TCCGTCGGTTTCTAACAGCT 59.036 50.000 11.88 0.00 0.00 4.24
7408 8724 2.005971 ATCCGTCGGTTTCTAACAGC 57.994 50.000 11.88 0.00 0.00 4.40
7409 8725 3.103738 CGTATCCGTCGGTTTCTAACAG 58.896 50.000 11.88 0.00 0.00 3.16
7410 8726 2.731968 GCGTATCCGTCGGTTTCTAACA 60.732 50.000 11.88 0.00 36.15 2.41
7411 8727 1.848608 GCGTATCCGTCGGTTTCTAAC 59.151 52.381 11.88 0.00 36.15 2.34
7412 8728 1.202290 GGCGTATCCGTCGGTTTCTAA 60.202 52.381 11.88 0.00 36.15 2.10
7413 8729 0.381801 GGCGTATCCGTCGGTTTCTA 59.618 55.000 11.88 0.00 36.15 2.10
7414 8730 1.140375 GGCGTATCCGTCGGTTTCT 59.860 57.895 11.88 0.00 36.15 2.52
7445 8761 4.557942 AAAAATCGGCAGCGCAAG 57.442 50.000 11.47 2.01 43.44 4.01
7464 8780 0.097499 TGCCGACTCGTACATACACG 59.903 55.000 0.00 0.00 43.28 4.49
7465 8781 1.399440 TCTGCCGACTCGTACATACAC 59.601 52.381 0.00 0.00 0.00 2.90
7466 8782 1.741528 TCTGCCGACTCGTACATACA 58.258 50.000 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.