Multiple sequence alignment - TraesCS6A01G324600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G324600 chr6A 100.000 2441 0 0 1 2441 558794870 558797310 0.000000e+00 4508.0
1 TraesCS6A01G324600 chr6B 90.050 1799 142 10 116 1883 623171894 623173686 0.000000e+00 2296.0
2 TraesCS6A01G324600 chr6B 91.028 457 39 2 1963 2418 623175995 623176450 1.240000e-172 616.0
3 TraesCS6A01G324600 chr6B 94.318 88 5 0 1 88 623088931 623089018 4.230000e-28 135.0
4 TraesCS6A01G324600 chr6B 87.879 66 8 0 1562 1627 514285605 514285540 7.240000e-11 78.7
5 TraesCS6A01G324600 chr6D 82.124 772 101 25 895 1638 413319168 413319930 5.730000e-176 627.0
6 TraesCS6A01G324600 chr6D 88.060 201 22 2 694 894 413318924 413319122 1.130000e-58 237.0
7 TraesCS6A01G324600 chr6D 88.571 105 7 2 1 100 413276199 413276303 3.300000e-24 122.0
8 TraesCS6A01G324600 chr1D 85.909 220 29 2 2091 2309 494941159 494940941 1.460000e-57 233.0
9 TraesCS6A01G324600 chr5D 85.333 225 29 4 2091 2312 259534552 259534329 1.890000e-56 230.0
10 TraesCS6A01G324600 chr5D 88.333 60 7 0 1561 1620 453889221 453889280 3.370000e-09 73.1
11 TraesCS6A01G324600 chr5A 84.444 225 31 4 2091 2312 346192953 346193176 4.090000e-53 219.0
12 TraesCS6A01G324600 chr4D 85.714 203 26 2 2091 2293 301747361 301747162 6.840000e-51 211.0
13 TraesCS6A01G324600 chr3A 84.163 221 30 3 2091 2309 648305659 648305442 2.460000e-50 209.0
14 TraesCS6A01G324600 chr7D 84.018 219 30 5 2090 2306 638681351 638681566 3.180000e-49 206.0
15 TraesCS6A01G324600 chr2D 83.251 203 28 5 2091 2290 555499986 555499787 5.360000e-42 182.0
16 TraesCS6A01G324600 chr3D 77.737 274 45 8 1554 1825 40789151 40789410 1.170000e-33 154.0
17 TraesCS6A01G324600 chr4A 88.889 99 11 0 2177 2275 179071439 179071537 3.300000e-24 122.0
18 TraesCS6A01G324600 chr5B 100.000 30 0 0 1591 1620 366029652 366029623 3.390000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G324600 chr6A 558794870 558797310 2440 False 4508 4508 100.000 1 2441 1 chr6A.!!$F1 2440
1 TraesCS6A01G324600 chr6B 623171894 623176450 4556 False 1456 2296 90.539 116 2418 2 chr6B.!!$F2 2302
2 TraesCS6A01G324600 chr6D 413318924 413319930 1006 False 432 627 85.092 694 1638 2 chr6D.!!$F2 944

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 97 0.038067 TACCGTGGTTGACCGTGATG 60.038 55.0 0.0 0.0 39.43 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1776 1873 0.03582 TTACATCTGTGGCCCGGTTC 60.036 55.0 0.0 0.0 0.0 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.461773 CTGCGGGGTGAGACGGAT 61.462 66.667 0.00 0.00 0.00 4.18
32 33 3.432051 CTGCGGGGTGAGACGGATC 62.432 68.421 0.00 0.00 0.00 3.36
33 34 4.570663 GCGGGGTGAGACGGATCG 62.571 72.222 0.00 0.00 0.00 3.69
34 35 3.900892 CGGGGTGAGACGGATCGG 61.901 72.222 0.00 0.00 0.00 4.18
35 36 2.441532 GGGGTGAGACGGATCGGA 60.442 66.667 7.35 0.00 0.00 4.55
36 37 2.491022 GGGGTGAGACGGATCGGAG 61.491 68.421 7.35 0.00 0.00 4.63
37 38 2.491022 GGGTGAGACGGATCGGAGG 61.491 68.421 7.35 0.00 0.00 4.30
38 39 1.453379 GGTGAGACGGATCGGAGGA 60.453 63.158 7.35 0.00 0.00 3.71
39 40 1.035932 GGTGAGACGGATCGGAGGAA 61.036 60.000 7.35 0.00 0.00 3.36
40 41 0.382515 GTGAGACGGATCGGAGGAAG 59.617 60.000 7.35 0.00 0.00 3.46
41 42 0.752009 TGAGACGGATCGGAGGAAGG 60.752 60.000 7.35 0.00 0.00 3.46
42 43 2.077821 GAGACGGATCGGAGGAAGGC 62.078 65.000 7.35 0.00 0.00 4.35
43 44 3.486252 GACGGATCGGAGGAAGGCG 62.486 68.421 7.35 0.00 0.00 5.52
44 45 3.528370 CGGATCGGAGGAAGGCGT 61.528 66.667 0.00 0.00 0.00 5.68
45 46 2.107141 GGATCGGAGGAAGGCGTG 59.893 66.667 0.00 0.00 0.00 5.34
46 47 2.107141 GATCGGAGGAAGGCGTGG 59.893 66.667 0.00 0.00 0.00 4.94
47 48 3.447025 GATCGGAGGAAGGCGTGGG 62.447 68.421 0.00 0.00 0.00 4.61
77 78 4.235762 AGGCGTGCCTGTGTCGTT 62.236 61.111 13.68 0.00 46.22 3.85
78 79 2.356553 GGCGTGCCTGTGTCGTTA 60.357 61.111 2.98 0.00 0.00 3.18
79 80 2.664436 GGCGTGCCTGTGTCGTTAC 61.664 63.158 2.98 0.00 0.00 2.50
80 81 2.664436 GCGTGCCTGTGTCGTTACC 61.664 63.158 0.00 0.00 0.00 2.85
81 82 2.369629 CGTGCCTGTGTCGTTACCG 61.370 63.158 0.00 0.00 0.00 4.02
82 83 1.300388 GTGCCTGTGTCGTTACCGT 60.300 57.895 0.00 0.00 35.01 4.83
83 84 1.300311 TGCCTGTGTCGTTACCGTG 60.300 57.895 0.00 0.00 35.01 4.94
84 85 2.025418 GCCTGTGTCGTTACCGTGG 61.025 63.158 0.00 0.00 35.01 4.94
85 86 1.364901 CCTGTGTCGTTACCGTGGT 59.635 57.895 0.00 0.00 35.01 4.16
86 87 0.249573 CCTGTGTCGTTACCGTGGTT 60.250 55.000 0.00 0.00 35.01 3.67
87 88 0.856641 CTGTGTCGTTACCGTGGTTG 59.143 55.000 0.00 0.00 35.01 3.77
88 89 0.459078 TGTGTCGTTACCGTGGTTGA 59.541 50.000 0.00 0.00 35.01 3.18
89 90 0.854705 GTGTCGTTACCGTGGTTGAC 59.145 55.000 0.00 4.49 35.01 3.18
90 91 0.249405 TGTCGTTACCGTGGTTGACC 60.249 55.000 0.00 0.00 35.01 4.02
91 92 1.007502 TCGTTACCGTGGTTGACCG 60.008 57.895 0.00 0.00 39.43 4.79
92 93 1.300080 CGTTACCGTGGTTGACCGT 60.300 57.895 0.00 0.00 39.43 4.83
93 94 1.550659 CGTTACCGTGGTTGACCGTG 61.551 60.000 0.00 0.00 39.43 4.94
94 95 0.249405 GTTACCGTGGTTGACCGTGA 60.249 55.000 0.00 0.00 39.43 4.35
95 96 0.680618 TTACCGTGGTTGACCGTGAT 59.319 50.000 0.00 0.00 39.43 3.06
96 97 0.038067 TACCGTGGTTGACCGTGATG 60.038 55.000 0.00 0.00 39.43 3.07
97 98 2.677003 CCGTGGTTGACCGTGATGC 61.677 63.158 0.00 0.00 39.43 3.91
98 99 1.958715 CGTGGTTGACCGTGATGCA 60.959 57.895 0.00 0.00 39.43 3.96
99 100 1.574428 GTGGTTGACCGTGATGCAC 59.426 57.895 0.00 0.00 39.43 4.57
108 109 4.494811 GTGATGCACGATGGACGA 57.505 55.556 0.00 0.00 45.77 4.20
109 110 2.291843 GTGATGCACGATGGACGAG 58.708 57.895 0.00 0.00 45.77 4.18
110 111 0.458543 GTGATGCACGATGGACGAGT 60.459 55.000 0.00 0.00 45.77 4.18
111 112 0.458370 TGATGCACGATGGACGAGTG 60.458 55.000 0.00 0.00 45.77 3.51
114 115 2.880879 CACGATGGACGAGTGCCG 60.881 66.667 0.00 0.00 45.77 5.69
124 125 2.844146 GAGTGCCGAACGACGTTG 59.156 61.111 19.60 10.25 40.78 4.10
140 141 1.223187 GTTGGTCCAACGGTACACTG 58.777 55.000 18.84 0.00 34.63 3.66
145 146 2.663520 CAACGGTACACTGCGCCA 60.664 61.111 4.18 0.00 0.00 5.69
178 179 2.109799 CAGTAGGCGCCTCCATGG 59.890 66.667 36.73 15.65 37.29 3.66
221 222 2.397754 TGCACGGGTTGATGCATCG 61.398 57.895 21.34 12.31 46.63 3.84
297 311 4.578928 GGGTGTATTTGGTTACCTGCATAG 59.421 45.833 2.07 0.00 33.71 2.23
303 317 1.905894 TGGTTACCTGCATAGCACTCA 59.094 47.619 2.07 0.00 33.79 3.41
314 328 2.586648 TAGCACTCAGTCAGGTCTGA 57.413 50.000 0.00 0.00 41.40 3.27
321 335 2.533916 TCAGTCAGGTCTGAGCTTCAT 58.466 47.619 6.64 0.00 40.75 2.57
324 338 3.194329 CAGTCAGGTCTGAGCTTCATACA 59.806 47.826 6.64 0.00 40.75 2.29
325 339 3.446873 AGTCAGGTCTGAGCTTCATACAG 59.553 47.826 6.64 0.00 40.75 2.74
329 343 2.189342 GTCTGAGCTTCATACAGCGAC 58.811 52.381 0.00 0.00 45.24 5.19
332 346 3.313803 TCTGAGCTTCATACAGCGACTAG 59.686 47.826 0.00 0.00 45.24 2.57
341 355 5.430886 TCATACAGCGACTAGTTACCTGTA 58.569 41.667 22.41 22.41 41.54 2.74
342 356 5.882000 TCATACAGCGACTAGTTACCTGTAA 59.118 40.000 23.27 12.87 40.92 2.41
390 404 0.539051 TCAAAGCAGCCTAGAGCCTC 59.461 55.000 0.00 0.00 45.47 4.70
403 417 1.375268 AGCCTCGCTCTGCAGAAAC 60.375 57.895 18.85 11.91 30.62 2.78
405 419 1.633852 GCCTCGCTCTGCAGAAACAG 61.634 60.000 18.85 12.47 39.12 3.16
406 420 1.633852 CCTCGCTCTGCAGAAACAGC 61.634 60.000 18.85 16.14 37.59 4.40
412 426 2.351111 GCTCTGCAGAAACAGCTGTATC 59.649 50.000 22.01 8.16 38.17 2.24
429 443 4.769688 TGTATCAGCCATTTTCATCGAGT 58.230 39.130 0.00 0.00 0.00 4.18
438 452 0.177141 TTTCATCGAGTTAGGCCCGG 59.823 55.000 0.00 0.00 0.00 5.73
440 454 2.842936 ATCGAGTTAGGCCCGGGG 60.843 66.667 25.28 9.31 0.00 5.73
461 475 3.920817 ACCAAGGAGGGCACATGA 58.079 55.556 0.00 0.00 43.89 3.07
475 489 3.058160 ATGACTGCAGGCGGTTGC 61.058 61.111 19.93 0.00 44.33 4.17
493 507 3.282157 ACGTGCAGGCACAAGCAG 61.282 61.111 22.69 9.50 46.47 4.24
505 519 1.462283 CACAAGCAGGAGACGTCAATG 59.538 52.381 19.50 13.70 0.00 2.82
534 548 2.705127 TCAAAGCCAAGGCAAAAATCCT 59.295 40.909 14.40 0.00 44.88 3.24
538 552 1.895131 GCCAAGGCAAAAATCCTCTCA 59.105 47.619 6.14 0.00 41.49 3.27
541 555 2.222227 AGGCAAAAATCCTCTCACCC 57.778 50.000 0.00 0.00 0.00 4.61
550 564 0.333312 TCCTCTCACCCCTCTCTCAC 59.667 60.000 0.00 0.00 0.00 3.51
561 575 0.732571 CTCTCTCACGGCTCACTCTC 59.267 60.000 0.00 0.00 0.00 3.20
569 583 1.101049 CGGCTCACTCTCCCTCTCTC 61.101 65.000 0.00 0.00 0.00 3.20
581 595 2.311841 TCCCTCTCTCCATAGTGACACA 59.688 50.000 8.59 0.00 0.00 3.72
582 596 2.428890 CCCTCTCTCCATAGTGACACAC 59.571 54.545 8.59 0.00 34.10 3.82
584 598 3.380004 CCTCTCTCCATAGTGACACACTC 59.620 52.174 8.59 0.00 41.21 3.51
596 610 1.466950 GACACACTCTCTCTCTCACCG 59.533 57.143 0.00 0.00 0.00 4.94
599 613 1.747367 ACTCTCTCTCTCACCGGCG 60.747 63.158 0.00 0.00 0.00 6.46
600 614 2.438614 TCTCTCTCTCACCGGCGG 60.439 66.667 27.06 27.06 0.00 6.13
624 638 2.480555 GCACCGGCTTCATCAACG 59.519 61.111 0.00 0.00 36.96 4.10
655 669 2.290071 CCCTTCGTCAATGGTGGTAAGT 60.290 50.000 0.00 0.00 0.00 2.24
715 729 6.601613 TCGATTTAAGCATGGATTTACACCTT 59.398 34.615 0.00 0.00 0.00 3.50
724 738 4.513442 TGGATTTACACCTTGAGGATTCG 58.487 43.478 3.59 0.00 38.94 3.34
745 759 4.155826 TCGATTTAGGGTTTGATGCAACTG 59.844 41.667 0.00 0.00 0.00 3.16
761 775 4.837860 TGCAACTGGATTAAGGGTTTCATT 59.162 37.500 0.00 0.00 0.00 2.57
762 776 5.047377 TGCAACTGGATTAAGGGTTTCATTC 60.047 40.000 0.00 0.00 0.00 2.67
793 807 2.152016 GGGTGTTGACTAAGGCTTGAC 58.848 52.381 10.69 1.71 0.00 3.18
795 809 3.412386 GGTGTTGACTAAGGCTTGACAT 58.588 45.455 10.69 0.00 0.00 3.06
811 825 1.398390 GACATGCTCGATTTGGGTGTC 59.602 52.381 0.00 0.00 0.00 3.67
853 867 2.901192 TCGAATTGGGTGTCTAAGTCCA 59.099 45.455 0.00 0.00 0.00 4.02
865 879 5.351740 GTGTCTAAGTCCAGTCAAATTAGGC 59.648 44.000 0.00 0.00 0.00 3.93
904 963 2.044946 GGGTGTCCAGTCCATGCC 60.045 66.667 0.00 0.00 0.00 4.40
1052 1130 0.761187 ATCAGGTGCCATATGCGTCT 59.239 50.000 0.00 0.00 45.60 4.18
1053 1131 1.408969 TCAGGTGCCATATGCGTCTA 58.591 50.000 0.00 0.00 45.60 2.59
1062 1140 0.598562 ATATGCGTCTAGTCAGGCCG 59.401 55.000 0.00 0.00 0.00 6.13
1116 1194 4.202284 GGTCCAACACACTTCTACAAGGTA 60.202 45.833 0.00 0.00 33.37 3.08
1124 1202 6.724905 ACACACTTCTACAAGGTAATCCTAGT 59.275 38.462 0.00 0.00 44.35 2.57
1126 1204 8.915036 CACACTTCTACAAGGTAATCCTAGTAT 58.085 37.037 0.00 0.00 44.35 2.12
1153 1231 1.204146 GGAGTTACTGCTGATCCCCA 58.796 55.000 0.00 0.00 0.00 4.96
1163 1241 1.688772 CTGATCCCCAATGGCTTCTG 58.311 55.000 0.00 0.00 0.00 3.02
1187 1265 1.887956 GCACATGACCAACATCCCACT 60.888 52.381 0.00 0.00 37.07 4.00
1188 1266 2.617788 GCACATGACCAACATCCCACTA 60.618 50.000 0.00 0.00 37.07 2.74
1284 1366 4.541250 TGATAAAGGATGGGCTGGATTT 57.459 40.909 0.00 0.00 0.00 2.17
1308 1390 6.718294 TGCCATAGCTCATCATATTCAGATT 58.282 36.000 0.00 0.00 40.80 2.40
1322 1404 4.713824 TTCAGATTGATTACCTCGTCGT 57.286 40.909 0.00 0.00 0.00 4.34
1323 1405 4.028852 TCAGATTGATTACCTCGTCGTG 57.971 45.455 0.00 0.00 0.00 4.35
1337 1419 1.864711 CGTCGTGTTCAAGGTGTTGAT 59.135 47.619 0.00 0.00 42.41 2.57
1365 1447 5.817816 GGACACCTTCAAGATGATCGTATTT 59.182 40.000 0.00 0.00 0.00 1.40
1430 1512 1.677576 TGAAGCACTTGCCTTGTTCTG 59.322 47.619 0.00 0.00 43.38 3.02
1465 1548 8.706322 ATGTGTTTTCCTTATTTTGTCTACCT 57.294 30.769 0.00 0.00 0.00 3.08
1532 1629 9.204570 CTTAATGTAGTACCCATAATGTAGTGC 57.795 37.037 0.00 0.00 0.00 4.40
1533 1630 6.740944 ATGTAGTACCCATAATGTAGTGCA 57.259 37.500 0.00 0.00 38.19 4.57
1631 1728 6.086222 GTCTTGCACGTAATCAAACATCAAT 58.914 36.000 0.00 0.00 0.00 2.57
1649 1746 4.136796 TCAATATGTTGCATCTGGGTAGC 58.863 43.478 0.00 0.00 35.26 3.58
1662 1759 0.811281 GGGTAGCAGATGTTTGCCAC 59.189 55.000 0.00 0.00 45.18 5.01
1668 1765 1.818060 GCAGATGTTTGCCACCATACA 59.182 47.619 0.00 0.00 38.13 2.29
1685 1782 2.432628 AGCGTGCTAGTGGTTCGC 60.433 61.111 8.70 8.70 45.82 4.70
1700 1797 4.508124 GTGGTTCGCCTCTAATGTAGATTG 59.492 45.833 0.00 0.00 38.36 2.67
1711 1808 7.390440 CCTCTAATGTAGATTGGTGTTTTGTGA 59.610 37.037 0.00 0.00 33.66 3.58
1712 1809 8.322906 TCTAATGTAGATTGGTGTTTTGTGAG 57.677 34.615 0.00 0.00 0.00 3.51
1727 1824 7.973944 GTGTTTTGTGAGAAATCAAACTAGGTT 59.026 33.333 0.00 0.00 34.05 3.50
1733 1830 8.208224 TGTGAGAAATCAAACTAGGTTCAGTAA 58.792 33.333 0.00 0.00 0.00 2.24
1734 1831 9.220767 GTGAGAAATCAAACTAGGTTCAGTAAT 57.779 33.333 0.00 0.00 0.00 1.89
1761 1858 1.208052 TGAGTCCATGTTAGCTCAGCC 59.792 52.381 0.00 0.00 33.62 4.85
1767 1864 1.065926 CATGTTAGCTCAGCCTGACCA 60.066 52.381 0.00 0.00 0.00 4.02
1774 1871 1.731720 CTCAGCCTGACCAAGCTAAC 58.268 55.000 0.00 0.00 37.18 2.34
1776 1873 1.002430 TCAGCCTGACCAAGCTAACTG 59.998 52.381 0.00 0.00 37.18 3.16
1779 1876 1.807142 GCCTGACCAAGCTAACTGAAC 59.193 52.381 0.00 0.00 0.00 3.18
1780 1877 2.427506 CCTGACCAAGCTAACTGAACC 58.572 52.381 0.00 0.00 0.00 3.62
1788 1885 1.373435 CTAACTGAACCGGGCCACA 59.627 57.895 6.32 0.00 0.00 4.17
1803 1900 1.340017 GCCACAGATGTAAGGAGGCAA 60.340 52.381 6.43 0.00 40.29 4.52
1836 1933 5.423886 CAAGTAACCAAACACACCCAAAAT 58.576 37.500 0.00 0.00 0.00 1.82
1878 1975 2.237392 AGTGCCATGGAACTAGAAGGAC 59.763 50.000 25.12 0.00 30.90 3.85
1883 1980 3.515502 CCATGGAACTAGAAGGACACTCA 59.484 47.826 5.56 0.00 0.00 3.41
1884 1981 4.499183 CATGGAACTAGAAGGACACTCAC 58.501 47.826 0.00 0.00 0.00 3.51
1885 1982 2.897969 TGGAACTAGAAGGACACTCACC 59.102 50.000 0.00 0.00 0.00 4.02
1887 1984 3.515901 GGAACTAGAAGGACACTCACCAT 59.484 47.826 0.00 0.00 0.00 3.55
1889 1986 2.755655 ACTAGAAGGACACTCACCATCG 59.244 50.000 0.00 0.00 31.53 3.84
1890 1987 1.633774 AGAAGGACACTCACCATCGT 58.366 50.000 0.00 0.00 31.53 3.73
1891 1988 1.273606 AGAAGGACACTCACCATCGTG 59.726 52.381 0.00 0.00 41.72 4.35
1892 1989 0.321671 AAGGACACTCACCATCGTGG 59.678 55.000 2.92 2.92 45.02 4.94
1893 1990 1.741770 GGACACTCACCATCGTGGC 60.742 63.158 4.23 0.00 42.67 5.01
1894 1991 2.048222 ACACTCACCATCGTGGCG 60.048 61.111 4.23 0.00 42.67 5.69
1895 1992 2.815211 CACTCACCATCGTGGCGG 60.815 66.667 4.23 0.00 42.67 6.13
1896 1993 2.994995 ACTCACCATCGTGGCGGA 60.995 61.111 4.23 2.56 42.67 5.54
1897 1994 2.359169 ACTCACCATCGTGGCGGAT 61.359 57.895 4.23 0.00 42.67 4.18
1911 2008 1.675310 CGGATGCCTCAAACCAGCA 60.675 57.895 0.00 0.00 41.50 4.41
1912 2009 1.885871 GGATGCCTCAAACCAGCAC 59.114 57.895 0.00 0.00 39.77 4.40
1913 2010 1.503542 GATGCCTCAAACCAGCACG 59.496 57.895 0.00 0.00 39.77 5.34
1914 2011 2.533391 GATGCCTCAAACCAGCACGC 62.533 60.000 0.00 0.00 39.77 5.34
1915 2012 3.286751 GCCTCAAACCAGCACGCA 61.287 61.111 0.00 0.00 0.00 5.24
1917 2014 1.008538 CCTCAAACCAGCACGCAAC 60.009 57.895 0.00 0.00 0.00 4.17
1918 2015 1.369209 CTCAAACCAGCACGCAACG 60.369 57.895 0.00 0.00 0.00 4.10
1919 2016 2.353376 CAAACCAGCACGCAACGG 60.353 61.111 0.00 0.00 0.00 4.44
1920 2017 4.264638 AAACCAGCACGCAACGGC 62.265 61.111 0.00 0.00 0.00 5.68
1950 2939 3.118956 CCTGGTGCGAAGAAGAGTAAGAT 60.119 47.826 0.00 0.00 0.00 2.40
1952 2941 3.109619 GGTGCGAAGAAGAGTAAGATCG 58.890 50.000 0.00 0.00 0.00 3.69
1953 2942 3.181499 GGTGCGAAGAAGAGTAAGATCGA 60.181 47.826 0.00 0.00 32.38 3.59
1957 2946 5.527951 TGCGAAGAAGAGTAAGATCGACTAT 59.472 40.000 3.59 0.00 32.38 2.12
1958 2947 5.849081 GCGAAGAAGAGTAAGATCGACTATG 59.151 44.000 3.59 0.00 32.38 2.23
1959 2948 6.367421 CGAAGAAGAGTAAGATCGACTATGG 58.633 44.000 3.59 0.00 32.38 2.74
1960 2949 6.203145 CGAAGAAGAGTAAGATCGACTATGGA 59.797 42.308 3.59 0.00 32.38 3.41
1961 2950 7.504924 AAGAAGAGTAAGATCGACTATGGAG 57.495 40.000 3.59 0.00 0.00 3.86
2031 4357 2.268298 CCCTACCGATTTCGTCTTGTG 58.732 52.381 0.00 0.00 37.74 3.33
2036 4362 3.259064 ACCGATTTCGTCTTGTGTATGG 58.741 45.455 0.00 0.00 37.74 2.74
2040 4366 4.860352 CGATTTCGTCTTGTGTATGGTACA 59.140 41.667 0.00 0.00 37.39 2.90
2067 4393 6.304624 TGATGGACCGACTGAGTATATAAGT 58.695 40.000 0.00 0.00 0.00 2.24
2117 4443 5.262009 ACCTTCTTTCTGGTTTATAAGGCC 58.738 41.667 0.00 0.00 36.33 5.19
2131 4457 4.833478 ATAAGGCCTGCATGTATCCTAG 57.167 45.455 5.69 0.00 0.00 3.02
2134 4460 3.254960 AGGCCTGCATGTATCCTAGATT 58.745 45.455 3.11 0.00 0.00 2.40
2168 4494 9.952030 TGACCAAACATAAGATGAGTTATACAA 57.048 29.630 0.00 0.00 0.00 2.41
2248 4574 9.755804 TTTTTGTGATATGTAACTTGAATTGCA 57.244 25.926 0.00 0.00 0.00 4.08
2302 4628 9.788960 GTTTAAGCCTTATAAACATGAAAGGAG 57.211 33.333 0.00 0.00 40.85 3.69
2330 4656 8.423906 AGTACTTCCTACCATATGTCAATAGG 57.576 38.462 1.24 7.44 34.80 2.57
2379 4705 8.298854 TGTCATTTAATTACATGCCATGATAGC 58.701 33.333 12.53 0.00 0.00 2.97
2396 4722 5.560724 TGATAGCAATATAAGAAGGTGGGC 58.439 41.667 0.00 0.00 0.00 5.36
2397 4723 3.229697 AGCAATATAAGAAGGTGGGCC 57.770 47.619 0.00 0.00 0.00 5.80
2398 4724 1.880027 GCAATATAAGAAGGTGGGCCG 59.120 52.381 0.00 0.00 40.50 6.13
2418 4745 4.890306 GGAGGAGGAGGGGGAGGC 62.890 77.778 0.00 0.00 0.00 4.70
2419 4746 4.095400 GAGGAGGAGGGGGAGGCA 62.095 72.222 0.00 0.00 0.00 4.75
2420 4747 3.381049 AGGAGGAGGGGGAGGCAT 61.381 66.667 0.00 0.00 0.00 4.40
2421 4748 2.851588 GGAGGAGGGGGAGGCATC 60.852 72.222 0.00 0.00 0.00 3.91
2422 4749 3.237741 GAGGAGGGGGAGGCATCG 61.238 72.222 0.00 0.00 0.00 3.84
2423 4750 4.888325 AGGAGGGGGAGGCATCGG 62.888 72.222 0.00 0.00 0.00 4.18
2425 4752 3.866582 GAGGGGGAGGCATCGGTG 61.867 72.222 0.00 0.00 0.00 4.94
2426 4753 4.414956 AGGGGGAGGCATCGGTGA 62.415 66.667 0.00 0.00 0.00 4.02
2427 4754 3.866582 GGGGGAGGCATCGGTGAG 61.867 72.222 0.00 0.00 0.00 3.51
2428 4755 3.083997 GGGGAGGCATCGGTGAGT 61.084 66.667 0.00 0.00 0.00 3.41
2429 4756 1.760875 GGGGAGGCATCGGTGAGTA 60.761 63.158 0.00 0.00 0.00 2.59
2430 4757 1.742768 GGGAGGCATCGGTGAGTAG 59.257 63.158 0.00 0.00 0.00 2.57
2431 4758 0.755698 GGGAGGCATCGGTGAGTAGA 60.756 60.000 0.00 0.00 0.00 2.59
2432 4759 0.671251 GGAGGCATCGGTGAGTAGAG 59.329 60.000 0.00 0.00 0.00 2.43
2433 4760 1.681538 GAGGCATCGGTGAGTAGAGA 58.318 55.000 0.00 0.00 0.00 3.10
2434 4761 1.606668 GAGGCATCGGTGAGTAGAGAG 59.393 57.143 0.00 0.00 0.00 3.20
2435 4762 0.671251 GGCATCGGTGAGTAGAGAGG 59.329 60.000 0.00 0.00 0.00 3.69
2436 4763 0.031449 GCATCGGTGAGTAGAGAGGC 59.969 60.000 0.00 0.00 33.39 4.70
2437 4764 1.686355 CATCGGTGAGTAGAGAGGCT 58.314 55.000 0.00 0.00 0.00 4.58
2438 4765 1.336440 CATCGGTGAGTAGAGAGGCTG 59.664 57.143 0.00 0.00 0.00 4.85
2439 4766 0.618981 TCGGTGAGTAGAGAGGCTGA 59.381 55.000 0.00 0.00 0.00 4.26
2440 4767 1.021202 CGGTGAGTAGAGAGGCTGAG 58.979 60.000 0.00 0.00 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 3.432051 GATCCGTCTCACCCCGCAG 62.432 68.421 0.00 0.00 0.00 5.18
15 16 3.458163 GATCCGTCTCACCCCGCA 61.458 66.667 0.00 0.00 0.00 5.69
16 17 4.570663 CGATCCGTCTCACCCCGC 62.571 72.222 0.00 0.00 0.00 6.13
17 18 3.900892 CCGATCCGTCTCACCCCG 61.901 72.222 0.00 0.00 0.00 5.73
18 19 2.441532 TCCGATCCGTCTCACCCC 60.442 66.667 0.00 0.00 0.00 4.95
19 20 2.491022 CCTCCGATCCGTCTCACCC 61.491 68.421 0.00 0.00 0.00 4.61
20 21 1.035932 TTCCTCCGATCCGTCTCACC 61.036 60.000 0.00 0.00 0.00 4.02
21 22 0.382515 CTTCCTCCGATCCGTCTCAC 59.617 60.000 0.00 0.00 0.00 3.51
22 23 0.752009 CCTTCCTCCGATCCGTCTCA 60.752 60.000 0.00 0.00 0.00 3.27
23 24 2.034607 CCTTCCTCCGATCCGTCTC 58.965 63.158 0.00 0.00 0.00 3.36
24 25 2.128507 GCCTTCCTCCGATCCGTCT 61.129 63.158 0.00 0.00 0.00 4.18
25 26 2.417936 GCCTTCCTCCGATCCGTC 59.582 66.667 0.00 0.00 0.00 4.79
26 27 3.528370 CGCCTTCCTCCGATCCGT 61.528 66.667 0.00 0.00 0.00 4.69
27 28 3.528370 ACGCCTTCCTCCGATCCG 61.528 66.667 0.00 0.00 0.00 4.18
28 29 2.107141 CACGCCTTCCTCCGATCC 59.893 66.667 0.00 0.00 0.00 3.36
29 30 2.107141 CCACGCCTTCCTCCGATC 59.893 66.667 0.00 0.00 0.00 3.69
30 31 3.470888 CCCACGCCTTCCTCCGAT 61.471 66.667 0.00 0.00 0.00 4.18
57 58 4.664677 GACACAGGCACGCCTCGT 62.665 66.667 7.85 8.52 46.28 4.18
59 60 2.758770 TAACGACACAGGCACGCCTC 62.759 60.000 7.85 0.00 46.28 4.70
61 62 2.356553 TAACGACACAGGCACGCC 60.357 61.111 0.00 0.00 0.00 5.68
62 63 2.664436 GGTAACGACACAGGCACGC 61.664 63.158 0.00 0.00 0.00 5.34
63 64 3.545911 GGTAACGACACAGGCACG 58.454 61.111 0.00 0.00 0.00 5.34
75 76 0.249405 TCACGGTCAACCACGGTAAC 60.249 55.000 0.00 0.00 36.44 2.50
76 77 0.680618 ATCACGGTCAACCACGGTAA 59.319 50.000 0.00 0.00 36.44 2.85
77 78 0.038067 CATCACGGTCAACCACGGTA 60.038 55.000 0.00 0.00 36.44 4.02
78 79 1.301401 CATCACGGTCAACCACGGT 60.301 57.895 0.00 0.00 39.07 4.83
79 80 2.677003 GCATCACGGTCAACCACGG 61.677 63.158 0.00 0.00 35.14 4.94
80 81 1.958715 TGCATCACGGTCAACCACG 60.959 57.895 0.00 0.00 35.14 4.94
81 82 1.574428 GTGCATCACGGTCAACCAC 59.426 57.895 0.00 0.00 35.14 4.16
82 83 4.057224 GTGCATCACGGTCAACCA 57.943 55.556 0.00 0.00 35.14 3.67
91 92 0.458543 ACTCGTCCATCGTGCATCAC 60.459 55.000 0.00 0.00 40.80 3.06
92 93 0.458370 CACTCGTCCATCGTGCATCA 60.458 55.000 0.00 0.00 40.80 3.07
93 94 2.291843 CACTCGTCCATCGTGCATC 58.708 57.895 0.00 0.00 40.80 3.91
94 95 4.502263 CACTCGTCCATCGTGCAT 57.498 55.556 0.00 0.00 40.80 3.96
97 98 2.812542 TTCGGCACTCGTCCATCGTG 62.813 60.000 0.00 0.00 40.80 4.35
98 99 2.632544 TTCGGCACTCGTCCATCGT 61.633 57.895 0.00 0.00 40.80 3.73
99 100 2.158959 GTTCGGCACTCGTCCATCG 61.159 63.158 0.00 0.00 40.32 3.84
100 101 2.158959 CGTTCGGCACTCGTCCATC 61.159 63.158 0.00 0.00 40.32 3.51
101 102 2.126071 CGTTCGGCACTCGTCCAT 60.126 61.111 0.00 0.00 40.32 3.41
102 103 3.289062 TCGTTCGGCACTCGTCCA 61.289 61.111 0.00 0.00 40.32 4.02
103 104 2.804090 GTCGTTCGGCACTCGTCC 60.804 66.667 0.00 0.00 40.32 4.79
104 105 3.164011 CGTCGTTCGGCACTCGTC 61.164 66.667 0.00 0.00 40.32 4.20
105 106 3.474230 AACGTCGTTCGGCACTCGT 62.474 57.895 4.40 0.00 44.69 4.18
106 107 2.728383 AACGTCGTTCGGCACTCG 60.728 61.111 4.40 0.00 44.69 4.18
107 108 2.654912 CCAACGTCGTTCGGCACTC 61.655 63.158 7.86 0.00 44.69 3.51
108 109 2.660552 CCAACGTCGTTCGGCACT 60.661 61.111 7.86 0.00 44.69 4.40
109 110 2.935446 GACCAACGTCGTTCGGCAC 61.935 63.158 19.84 13.43 44.69 5.01
110 111 2.659244 GACCAACGTCGTTCGGCA 60.659 61.111 19.84 0.00 44.69 5.69
111 112 3.408851 GGACCAACGTCGTTCGGC 61.409 66.667 19.84 12.18 44.69 5.54
112 113 1.592131 TTGGACCAACGTCGTTCGG 60.592 57.895 18.87 18.87 44.69 4.30
113 114 1.561250 GTTGGACCAACGTCGTTCG 59.439 57.895 21.24 4.14 40.17 3.95
124 125 2.025418 CGCAGTGTACCGTTGGACC 61.025 63.158 0.00 0.00 0.00 4.46
140 141 0.736325 ACGTAACATCTCACTGGCGC 60.736 55.000 0.00 0.00 0.00 6.53
145 146 3.119459 CCTACTGCACGTAACATCTCACT 60.119 47.826 0.00 0.00 0.00 3.41
173 174 1.547372 CAGTCCCAAGCTTTTCCATGG 59.453 52.381 4.97 4.97 0.00 3.66
178 179 0.038801 GCAGCAGTCCCAAGCTTTTC 60.039 55.000 0.00 0.00 39.50 2.29
207 208 0.801872 TTTCACGATGCATCAACCCG 59.198 50.000 25.70 14.65 0.00 5.28
221 222 2.090503 GGCGATGCGATTTTTGTTTCAC 59.909 45.455 0.00 0.00 0.00 3.18
303 317 3.435275 TGTATGAAGCTCAGACCTGACT 58.565 45.455 7.98 0.00 37.78 3.41
314 328 4.202030 GGTAACTAGTCGCTGTATGAAGCT 60.202 45.833 0.00 0.00 41.24 3.74
332 346 5.758784 AGACTCAAAAGCACTTACAGGTAAC 59.241 40.000 0.00 0.00 0.00 2.50
341 355 7.391554 TCATGCTATTTAGACTCAAAAGCACTT 59.608 33.333 0.00 0.00 35.92 3.16
342 356 6.881065 TCATGCTATTTAGACTCAAAAGCACT 59.119 34.615 0.00 0.00 35.92 4.40
390 404 1.226686 ACAGCTGTTTCTGCAGAGCG 61.227 55.000 15.25 14.28 38.70 5.03
406 420 4.813161 ACTCGATGAAAATGGCTGATACAG 59.187 41.667 0.00 0.00 34.12 2.74
412 426 3.242870 GCCTAACTCGATGAAAATGGCTG 60.243 47.826 0.00 0.00 35.44 4.85
454 468 3.807538 CCGCCTGCAGTCATGTGC 61.808 66.667 13.81 6.64 44.27 4.57
493 507 3.807622 TGAGAAACAACATTGACGTCTCC 59.192 43.478 17.92 0.00 34.79 3.71
505 519 2.159114 TGCCTTGGCTTTGAGAAACAAC 60.159 45.455 13.18 0.00 38.29 3.32
534 548 1.000771 CCGTGAGAGAGGGGTGAGA 60.001 63.158 0.00 0.00 0.00 3.27
538 552 2.363147 GAGCCGTGAGAGAGGGGT 60.363 66.667 0.00 0.00 43.09 4.95
541 555 0.679640 AGAGTGAGCCGTGAGAGAGG 60.680 60.000 0.00 0.00 0.00 3.69
550 564 1.077068 AGAGAGGGAGAGTGAGCCG 60.077 63.158 0.00 0.00 0.00 5.52
561 575 2.428890 GTGTGTCACTATGGAGAGAGGG 59.571 54.545 4.27 0.00 0.00 4.30
569 583 4.269183 AGAGAGAGAGTGTGTCACTATGG 58.731 47.826 4.27 0.00 45.44 2.74
581 595 1.747367 CGCCGGTGAGAGAGAGAGT 60.747 63.158 10.20 0.00 0.00 3.24
582 596 2.477176 CCGCCGGTGAGAGAGAGAG 61.477 68.421 18.79 0.00 0.00 3.20
583 597 2.438614 CCGCCGGTGAGAGAGAGA 60.439 66.667 18.79 0.00 0.00 3.10
584 598 4.200283 GCCGCCGGTGAGAGAGAG 62.200 72.222 18.79 0.00 0.00 3.20
623 637 1.079127 ACGAAGGGGTGATGAAGCG 60.079 57.895 0.00 0.00 0.00 4.68
624 638 0.036388 TGACGAAGGGGTGATGAAGC 60.036 55.000 0.00 0.00 0.00 3.86
655 669 4.074799 TCCTAAATCTGGGAGACAAGGA 57.925 45.455 0.00 0.00 31.28 3.36
715 729 5.429681 TCAAACCCTAAATCGAATCCTCA 57.570 39.130 0.00 0.00 0.00 3.86
724 738 4.462483 TCCAGTTGCATCAAACCCTAAATC 59.538 41.667 0.00 0.00 0.00 2.17
745 759 3.288092 AGCCGAATGAAACCCTTAATCC 58.712 45.455 0.00 0.00 0.00 3.01
761 775 0.958091 CAACACCCAATTTGAGCCGA 59.042 50.000 0.00 0.00 0.00 5.54
762 776 0.958091 TCAACACCCAATTTGAGCCG 59.042 50.000 0.00 0.00 0.00 5.52
793 807 0.374758 CGACACCCAAATCGAGCATG 59.625 55.000 0.00 0.00 40.86 4.06
795 809 1.668867 TCGACACCCAAATCGAGCA 59.331 52.632 0.00 0.00 42.18 4.26
811 825 6.387465 TCGAGCTATATGAAACCCTTAATCG 58.613 40.000 0.00 0.00 0.00 3.34
853 867 8.220559 ACCATATATTCACAGCCTAATTTGACT 58.779 33.333 0.00 0.00 0.00 3.41
865 879 6.486657 ACCCAAATCGAACCATATATTCACAG 59.513 38.462 0.00 0.00 0.00 3.66
904 963 6.182039 ACAAGATCAATGGACGTACATTTG 57.818 37.500 23.52 19.69 38.94 2.32
1003 1064 0.237498 GCAGTTGCCTTTACGACCAC 59.763 55.000 0.00 0.00 34.31 4.16
1052 1130 5.046448 TGGTAGTAATTTTTCGGCCTGACTA 60.046 40.000 0.00 0.00 0.00 2.59
1053 1131 4.259356 GGTAGTAATTTTTCGGCCTGACT 58.741 43.478 0.00 0.00 0.00 3.41
1116 1194 9.435570 AGTAACTCCAACACATATACTAGGATT 57.564 33.333 0.00 0.00 0.00 3.01
1124 1202 6.538945 TCAGCAGTAACTCCAACACATATA 57.461 37.500 0.00 0.00 0.00 0.86
1126 1204 4.882842 TCAGCAGTAACTCCAACACATA 57.117 40.909 0.00 0.00 0.00 2.29
1163 1241 2.423538 GGGATGTTGGTCATGTGCTTAC 59.576 50.000 0.00 0.00 36.83 2.34
1187 1265 7.088905 GGTGTTCATCTTAAGAACGACTTCTA 58.911 38.462 9.71 0.00 46.34 2.10
1188 1266 5.927115 GGTGTTCATCTTAAGAACGACTTCT 59.073 40.000 9.71 0.00 46.34 2.85
1248 1330 6.097915 CCTTTATCAAGGGCTATCTTACGA 57.902 41.667 0.00 0.00 45.63 3.43
1284 1366 5.750352 TCTGAATATGATGAGCTATGGCA 57.250 39.130 3.10 0.00 41.70 4.92
1308 1390 3.571571 CTTGAACACGACGAGGTAATCA 58.428 45.455 0.00 0.00 0.00 2.57
1322 1404 3.380004 GTCCACAATCAACACCTTGAACA 59.620 43.478 0.00 0.00 39.90 3.18
1323 1405 3.380004 TGTCCACAATCAACACCTTGAAC 59.620 43.478 0.00 0.00 39.90 3.18
1337 1419 3.855255 TCATCTTGAAGGTGTCCACAA 57.145 42.857 5.23 0.00 0.00 3.33
1365 1447 0.597568 CCTCAGCGCCAAAAATGTCA 59.402 50.000 2.29 0.00 0.00 3.58
1430 1512 9.772973 AAATAAGGAAAACACATTAAACTTCCC 57.227 29.630 0.00 0.00 34.15 3.97
1465 1548 3.622612 CAGACATTCATATTGACCACGCA 59.377 43.478 0.00 0.00 0.00 5.24
1631 1728 2.771372 TCTGCTACCCAGATGCAACATA 59.229 45.455 0.00 0.00 45.44 2.29
1641 1738 1.098050 GGCAAACATCTGCTACCCAG 58.902 55.000 0.00 0.00 42.25 4.45
1649 1746 2.159338 GCTGTATGGTGGCAAACATCTG 60.159 50.000 0.00 0.00 0.00 2.90
1662 1759 0.175760 ACCACTAGCACGCTGTATGG 59.824 55.000 13.49 13.49 33.00 2.74
1668 1765 2.432628 GCGAACCACTAGCACGCT 60.433 61.111 0.00 0.00 44.67 5.07
1685 1782 7.390440 TCACAAAACACCAATCTACATTAGAGG 59.610 37.037 0.00 0.00 38.38 3.69
1700 1797 6.918022 CCTAGTTTGATTTCTCACAAAACACC 59.082 38.462 0.00 0.00 37.66 4.16
1711 1808 9.793259 TCAATTACTGAACCTAGTTTGATTTCT 57.207 29.630 0.00 0.00 27.95 2.52
1727 1824 8.408043 AACATGGACTCAAAATCAATTACTGA 57.592 30.769 0.00 0.00 38.81 3.41
1733 1830 6.660521 TGAGCTAACATGGACTCAAAATCAAT 59.339 34.615 0.00 0.00 36.27 2.57
1734 1831 6.003326 TGAGCTAACATGGACTCAAAATCAA 58.997 36.000 0.00 0.00 36.27 2.57
1743 1840 1.209019 CAGGCTGAGCTAACATGGACT 59.791 52.381 9.42 0.00 0.00 3.85
1761 1858 2.069273 CGGTTCAGTTAGCTTGGTCAG 58.931 52.381 0.00 0.00 0.00 3.51
1767 1864 1.002502 GGCCCGGTTCAGTTAGCTT 60.003 57.895 0.00 0.00 0.00 3.74
1774 1871 1.746615 CATCTGTGGCCCGGTTCAG 60.747 63.158 0.00 3.43 0.00 3.02
1776 1873 0.035820 TTACATCTGTGGCCCGGTTC 60.036 55.000 0.00 0.00 0.00 3.62
1779 1876 1.153168 CCTTACATCTGTGGCCCGG 60.153 63.158 0.00 0.00 0.00 5.73
1780 1877 0.179073 CTCCTTACATCTGTGGCCCG 60.179 60.000 0.00 0.00 0.00 6.13
1803 1900 8.608317 GTGTGTTTGGTTACTTGCATAATTTTT 58.392 29.630 0.00 0.00 0.00 1.94
1815 1912 4.712337 TCATTTTGGGTGTGTTTGGTTACT 59.288 37.500 0.00 0.00 0.00 2.24
1817 1914 4.440250 CGTCATTTTGGGTGTGTTTGGTTA 60.440 41.667 0.00 0.00 0.00 2.85
1818 1915 3.677424 CGTCATTTTGGGTGTGTTTGGTT 60.677 43.478 0.00 0.00 0.00 3.67
1819 1916 2.159170 CGTCATTTTGGGTGTGTTTGGT 60.159 45.455 0.00 0.00 0.00 3.67
1892 1989 3.056313 GCTGGTTTGAGGCATCCGC 62.056 63.158 0.00 0.00 37.44 5.54
1893 1990 1.675310 TGCTGGTTTGAGGCATCCG 60.675 57.895 0.00 0.00 0.00 4.18
1894 1991 1.885871 GTGCTGGTTTGAGGCATCC 59.114 57.895 0.00 0.00 38.27 3.51
1895 1992 1.503542 CGTGCTGGTTTGAGGCATC 59.496 57.895 0.00 0.00 38.27 3.91
1896 1993 2.629656 GCGTGCTGGTTTGAGGCAT 61.630 57.895 0.00 0.00 38.27 4.40
1897 1994 3.286751 GCGTGCTGGTTTGAGGCA 61.287 61.111 0.00 0.00 0.00 4.75
1900 1997 1.369209 CGTTGCGTGCTGGTTTGAG 60.369 57.895 0.00 0.00 0.00 3.02
1901 1998 2.712539 CGTTGCGTGCTGGTTTGA 59.287 55.556 0.00 0.00 0.00 2.69
1903 2000 4.264638 GCCGTTGCGTGCTGGTTT 62.265 61.111 0.00 0.00 0.00 3.27
1906 2003 4.980903 GTTGCCGTTGCGTGCTGG 62.981 66.667 0.00 0.00 41.78 4.85
1914 2011 4.368808 CAGGTCGCGTTGCCGTTG 62.369 66.667 5.77 0.00 36.15 4.10
1924 2021 2.357034 TTCTTCGCACCAGGTCGC 60.357 61.111 0.00 0.00 0.00 5.19
1925 2022 0.734253 CTCTTCTTCGCACCAGGTCG 60.734 60.000 0.00 0.00 0.00 4.79
1927 2024 1.629043 TACTCTTCTTCGCACCAGGT 58.371 50.000 0.00 0.00 0.00 4.00
1928 2025 2.231478 TCTTACTCTTCTTCGCACCAGG 59.769 50.000 0.00 0.00 0.00 4.45
1933 2922 3.690139 AGTCGATCTTACTCTTCTTCGCA 59.310 43.478 0.00 0.00 0.00 5.10
1935 2924 6.203145 TCCATAGTCGATCTTACTCTTCTTCG 59.797 42.308 1.23 0.00 0.00 3.79
1936 2925 7.308348 CCTCCATAGTCGATCTTACTCTTCTTC 60.308 44.444 1.23 0.00 0.00 2.87
1950 2939 3.643237 AGATGGTTTCCTCCATAGTCGA 58.357 45.455 0.00 0.00 46.72 4.20
1952 2941 5.104259 ACAAGATGGTTTCCTCCATAGTC 57.896 43.478 0.00 0.00 46.72 2.59
1953 2942 5.520748 AACAAGATGGTTTCCTCCATAGT 57.479 39.130 0.00 0.00 46.72 2.12
1957 2946 4.506625 CCACTAACAAGATGGTTTCCTCCA 60.507 45.833 0.00 0.00 42.01 3.86
1958 2947 4.010349 CCACTAACAAGATGGTTTCCTCC 58.990 47.826 0.00 0.00 32.29 4.30
1959 2948 4.906618 TCCACTAACAAGATGGTTTCCTC 58.093 43.478 0.00 0.00 34.89 3.71
1960 2949 4.993705 TCCACTAACAAGATGGTTTCCT 57.006 40.909 0.00 0.00 34.89 3.36
1961 2950 5.123979 GTCATCCACTAACAAGATGGTTTCC 59.876 44.000 0.00 0.00 38.33 3.13
2009 4335 2.268298 CAAGACGAAATCGGTAGGGTG 58.732 52.381 7.81 0.00 44.95 4.61
2010 4336 1.897802 ACAAGACGAAATCGGTAGGGT 59.102 47.619 7.81 0.00 44.95 4.34
2013 4339 4.503007 CCATACACAAGACGAAATCGGTAG 59.497 45.833 7.81 0.00 44.95 3.18
2017 4343 4.860352 TGTACCATACACAAGACGAAATCG 59.140 41.667 0.48 0.48 38.44 3.34
2018 4344 5.867716 ACTGTACCATACACAAGACGAAATC 59.132 40.000 0.00 0.00 34.46 2.17
2031 4357 3.131577 TCGGTCCATCAACTGTACCATAC 59.868 47.826 0.00 0.00 0.00 2.39
2036 4362 2.230508 TCAGTCGGTCCATCAACTGTAC 59.769 50.000 9.35 0.00 40.01 2.90
2040 4366 1.633774 ACTCAGTCGGTCCATCAACT 58.366 50.000 0.00 0.00 0.00 3.16
2091 4417 7.110810 GCCTTATAAACCAGAAAGAAGGTAGT 58.889 38.462 0.00 0.00 37.07 2.73
2092 4418 6.542735 GGCCTTATAAACCAGAAAGAAGGTAG 59.457 42.308 0.00 0.00 37.07 3.18
2098 4424 4.263727 TGCAGGCCTTATAAACCAGAAAGA 60.264 41.667 0.00 0.00 0.00 2.52
2104 4430 3.380471 ACATGCAGGCCTTATAAACCA 57.620 42.857 0.00 0.00 0.00 3.67
2105 4431 4.459337 GGATACATGCAGGCCTTATAAACC 59.541 45.833 0.00 0.00 0.00 3.27
2231 4557 7.701539 AGACCAATGCAATTCAAGTTACATA 57.298 32.000 0.00 0.00 31.22 2.29
2234 4560 8.863049 CAAATAGACCAATGCAATTCAAGTTAC 58.137 33.333 0.00 0.00 31.22 2.50
2242 4568 6.014327 AGGTTGACAAATAGACCAATGCAATT 60.014 34.615 0.00 0.00 36.63 2.32
2247 4573 9.784531 ATATCTAGGTTGACAAATAGACCAATG 57.215 33.333 11.63 0.00 34.60 2.82
2278 4604 8.113462 ACCTCCTTTCATGTTTATAAGGCTTAA 58.887 33.333 11.59 0.00 37.62 1.85
2289 4615 6.272558 AGGAAGTACTACCTCCTTTCATGTTT 59.727 38.462 8.56 0.00 0.00 2.83
2362 4688 9.910267 TCTTATATTGCTATCATGGCATGTAAT 57.090 29.630 25.62 15.78 39.54 1.89
2379 4705 2.105821 TCCGGCCCACCTTCTTATATTG 59.894 50.000 0.00 0.00 0.00 1.90
2385 4711 3.330720 CCTCCGGCCCACCTTCTT 61.331 66.667 0.00 0.00 0.00 2.52
2396 4722 4.548513 CCCCTCCTCCTCCTCCGG 62.549 77.778 0.00 0.00 0.00 5.14
2397 4723 4.548513 CCCCCTCCTCCTCCTCCG 62.549 77.778 0.00 0.00 0.00 4.63
2398 4724 3.036959 TCCCCCTCCTCCTCCTCC 61.037 72.222 0.00 0.00 0.00 4.30
2412 4739 0.755698 TCTACTCACCGATGCCTCCC 60.756 60.000 0.00 0.00 0.00 4.30
2418 4745 1.336440 CAGCCTCTCTACTCACCGATG 59.664 57.143 0.00 0.00 0.00 3.84
2419 4746 1.213182 TCAGCCTCTCTACTCACCGAT 59.787 52.381 0.00 0.00 0.00 4.18
2420 4747 0.618981 TCAGCCTCTCTACTCACCGA 59.381 55.000 0.00 0.00 0.00 4.69
2421 4748 1.021202 CTCAGCCTCTCTACTCACCG 58.979 60.000 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.