Multiple sequence alignment - TraesCS6A01G324300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G324300 chr6A 100.000 2714 0 0 1 2714 558175822 558173109 0.000000e+00 5012
1 TraesCS6A01G324300 chr6A 90.603 564 46 4 2156 2714 451130233 451129672 0.000000e+00 741
2 TraesCS6A01G324300 chr6A 91.150 452 27 11 1 445 154058001 154057556 3.870000e-168 601
3 TraesCS6A01G324300 chr6A 84.322 472 56 10 1 459 404358459 404357993 1.920000e-121 446
4 TraesCS6A01G324300 chr6A 100.000 90 0 0 370 459 558175364 558175275 1.670000e-37 167
5 TraesCS6A01G324300 chr6A 100.000 90 0 0 459 548 558175453 558175364 1.670000e-37 167
6 TraesCS6A01G324300 chr6A 98.824 85 0 1 1 84 154058042 154057958 1.680000e-32 150
7 TraesCS6A01G324300 chr6A 97.368 76 2 0 459 534 154057631 154057556 2.190000e-26 130
8 TraesCS6A01G324300 chr6D 91.318 1578 89 14 585 2155 412768503 412766967 0.000000e+00 2111
9 TraesCS6A01G324300 chr6B 89.621 896 63 10 765 1660 621187431 621186566 0.000000e+00 1112
10 TraesCS6A01G324300 chr6B 93.058 677 42 1 1153 1824 621042961 621042285 0.000000e+00 985
11 TraesCS6A01G324300 chr6B 94.695 509 20 1 1654 2155 621180178 621179670 0.000000e+00 784
12 TraesCS6A01G324300 chr6B 96.309 298 11 0 1858 2155 621084027 621083730 8.730000e-135 490
13 TraesCS6A01G324300 chr6B 93.694 111 4 2 461 568 7127280 7127390 2.160000e-36 163
14 TraesCS6A01G324300 chr6B 91.597 119 7 2 344 459 7127252 7127370 7.780000e-36 161
15 TraesCS6A01G324300 chr6B 84.211 171 7 6 587 750 621046547 621046390 6.050000e-32 148
16 TraesCS6A01G324300 chr5A 92.199 564 36 7 2156 2714 9593205 9592645 0.000000e+00 791
17 TraesCS6A01G324300 chr5A 93.333 105 4 2 465 567 441522732 441522629 4.680000e-33 152
18 TraesCS6A01G324300 chr7A 78.174 1205 235 23 965 2149 35206034 35204838 0.000000e+00 743
19 TraesCS6A01G324300 chr7A 91.818 110 6 2 461 567 19800878 19800987 1.680000e-32 150
20 TraesCS6A01G324300 chr5D 92.075 530 35 6 2156 2681 400401338 400401864 0.000000e+00 739
21 TraesCS6A01G324300 chr5D 84.468 470 57 9 1 459 412196170 412195706 1.480000e-122 449
22 TraesCS6A01G324300 chr3A 89.735 565 46 10 2156 2714 728583606 728583048 0.000000e+00 712
23 TraesCS6A01G324300 chr3A 89.539 564 49 8 2156 2714 728605642 728605084 0.000000e+00 706
24 TraesCS6A01G324300 chr3A 89.381 565 48 10 2156 2714 728562996 728562438 0.000000e+00 701
25 TraesCS6A01G324300 chr3A 89.184 564 51 8 2156 2714 728533776 728533218 0.000000e+00 695
26 TraesCS6A01G324300 chr3A 90.075 534 43 9 2156 2685 728554034 728553507 0.000000e+00 684
27 TraesCS6A01G324300 chr3D 90.056 533 38 12 2155 2675 464113124 464113653 0.000000e+00 676
28 TraesCS6A01G324300 chr3D 91.743 109 6 2 461 567 275581570 275581463 6.050000e-32 148
29 TraesCS6A01G324300 chr7D 76.740 1221 236 27 962 2149 34973252 34974457 2.950000e-179 638
30 TraesCS6A01G324300 chrUn 77.788 1085 206 25 1100 2157 394898907 394899983 1.060000e-178 636
31 TraesCS6A01G324300 chr4A 87.215 438 34 11 1 425 577763871 577763443 1.890000e-131 479
32 TraesCS6A01G324300 chr4A 95.238 84 3 1 1 84 577763910 577763828 6.100000e-27 132
33 TraesCS6A01G324300 chr7B 84.034 476 53 14 1 459 547179074 547178605 1.150000e-118 436
34 TraesCS6A01G324300 chr7B 83.122 474 51 17 1 459 51902601 51903060 3.250000e-109 405
35 TraesCS6A01G324300 chr7B 91.892 111 6 2 461 568 547178695 547178585 4.680000e-33 152
36 TraesCS6A01G324300 chr7B 92.771 83 4 1 487 567 51902997 51903079 4.750000e-23 119
37 TraesCS6A01G324300 chr5B 85.814 430 40 10 1 414 127542443 127542019 1.150000e-118 436
38 TraesCS6A01G324300 chr5B 80.408 490 43 13 4 459 64630266 64629796 9.370000e-85 324
39 TraesCS6A01G324300 chr5B 92.593 108 5 2 463 567 64629884 64629777 4.680000e-33 152
40 TraesCS6A01G324300 chr1D 83.439 471 44 20 1 459 407701959 407701511 9.050000e-110 407
41 TraesCS6A01G324300 chr1A 85.460 337 36 7 1 330 455601357 455601027 3.350000e-89 339
42 TraesCS6A01G324300 chr3B 77.597 308 50 17 116 416 475654658 475654953 4.650000e-38 169


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G324300 chr6A 558173109 558175822 2713 True 1782.0 5012 100.0000 1 2714 3 chr6A.!!$R4 2713
1 TraesCS6A01G324300 chr6A 451129672 451130233 561 True 741.0 741 90.6030 2156 2714 1 chr6A.!!$R2 558
2 TraesCS6A01G324300 chr6D 412766967 412768503 1536 True 2111.0 2111 91.3180 585 2155 1 chr6D.!!$R1 1570
3 TraesCS6A01G324300 chr6B 621186566 621187431 865 True 1112.0 1112 89.6210 765 1660 1 chr6B.!!$R3 895
4 TraesCS6A01G324300 chr6B 621179670 621180178 508 True 784.0 784 94.6950 1654 2155 1 chr6B.!!$R2 501
5 TraesCS6A01G324300 chr6B 621042285 621046547 4262 True 566.5 985 88.6345 587 1824 2 chr6B.!!$R4 1237
6 TraesCS6A01G324300 chr5A 9592645 9593205 560 True 791.0 791 92.1990 2156 2714 1 chr5A.!!$R1 558
7 TraesCS6A01G324300 chr7A 35204838 35206034 1196 True 743.0 743 78.1740 965 2149 1 chr7A.!!$R1 1184
8 TraesCS6A01G324300 chr5D 400401338 400401864 526 False 739.0 739 92.0750 2156 2681 1 chr5D.!!$F1 525
9 TraesCS6A01G324300 chr3A 728583048 728583606 558 True 712.0 712 89.7350 2156 2714 1 chr3A.!!$R4 558
10 TraesCS6A01G324300 chr3A 728605084 728605642 558 True 706.0 706 89.5390 2156 2714 1 chr3A.!!$R5 558
11 TraesCS6A01G324300 chr3A 728562438 728562996 558 True 701.0 701 89.3810 2156 2714 1 chr3A.!!$R3 558
12 TraesCS6A01G324300 chr3A 728533218 728533776 558 True 695.0 695 89.1840 2156 2714 1 chr3A.!!$R1 558
13 TraesCS6A01G324300 chr3A 728553507 728554034 527 True 684.0 684 90.0750 2156 2685 1 chr3A.!!$R2 529
14 TraesCS6A01G324300 chr3D 464113124 464113653 529 False 676.0 676 90.0560 2155 2675 1 chr3D.!!$F1 520
15 TraesCS6A01G324300 chr7D 34973252 34974457 1205 False 638.0 638 76.7400 962 2149 1 chr7D.!!$F1 1187
16 TraesCS6A01G324300 chrUn 394898907 394899983 1076 False 636.0 636 77.7880 1100 2157 1 chrUn.!!$F1 1057

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
463 464 0.027979 CAACCGGCGCATAAGTCATG 59.972 55.0 10.83 0.0 37.73 3.07 F
496 497 0.037303 ACTGACCTGCTGTTCATGGG 59.963 55.0 0.00 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1711 4766 0.894835 TGCGAGTGTGCCTCAATCTA 59.105 50.000 0.0 0.0 40.48 1.98 R
1918 4973 2.367202 GCCCTCCCACGAAGATGGA 61.367 63.158 0.0 0.0 43.02 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 9.804547 TTCAAAAACGATGAACTTTTTCAAAAG 57.195 25.926 9.98 9.98 45.01 2.27
63 64 9.971744 CTTTTTCAAAAGTCGATGAATGTTTTT 57.028 25.926 4.15 0.00 40.31 1.94
102 103 5.584253 TTTTTGAAAACCGATGAACTCCA 57.416 34.783 0.00 0.00 0.00 3.86
103 104 5.584253 TTTTGAAAACCGATGAACTCCAA 57.416 34.783 0.00 0.00 0.00 3.53
104 105 5.782893 TTTGAAAACCGATGAACTCCAAT 57.217 34.783 0.00 0.00 0.00 3.16
105 106 5.782893 TTGAAAACCGATGAACTCCAATT 57.217 34.783 0.00 0.00 0.00 2.32
106 107 5.782893 TGAAAACCGATGAACTCCAATTT 57.217 34.783 0.00 0.00 0.00 1.82
107 108 6.155475 TGAAAACCGATGAACTCCAATTTT 57.845 33.333 0.00 0.00 0.00 1.82
108 109 6.578023 TGAAAACCGATGAACTCCAATTTTT 58.422 32.000 0.00 0.00 0.00 1.94
109 110 7.717568 TGAAAACCGATGAACTCCAATTTTTA 58.282 30.769 0.00 0.00 0.00 1.52
110 111 8.364142 TGAAAACCGATGAACTCCAATTTTTAT 58.636 29.630 0.00 0.00 0.00 1.40
111 112 8.532977 AAAACCGATGAACTCCAATTTTTATG 57.467 30.769 0.00 0.00 0.00 1.90
112 113 7.461182 AACCGATGAACTCCAATTTTTATGA 57.539 32.000 0.00 0.00 0.00 2.15
113 114 7.461182 ACCGATGAACTCCAATTTTTATGAA 57.539 32.000 0.00 0.00 0.00 2.57
114 115 7.312899 ACCGATGAACTCCAATTTTTATGAAC 58.687 34.615 0.00 0.00 0.00 3.18
115 116 7.176690 ACCGATGAACTCCAATTTTTATGAACT 59.823 33.333 0.00 0.00 0.00 3.01
116 117 8.028938 CCGATGAACTCCAATTTTTATGAACTT 58.971 33.333 0.00 0.00 0.00 2.66
117 118 9.410556 CGATGAACTCCAATTTTTATGAACTTT 57.589 29.630 0.00 0.00 0.00 2.66
159 160 9.810545 TTTTTCCTTCTAATTCGTGATGTTTTT 57.189 25.926 0.00 0.00 0.00 1.94
181 182 8.511604 TTTTTAAAATCTGTGGGCATTCAAAA 57.488 26.923 0.55 0.00 0.00 2.44
182 183 8.688747 TTTTAAAATCTGTGGGCATTCAAAAT 57.311 26.923 0.00 0.00 0.00 1.82
183 184 8.688747 TTTAAAATCTGTGGGCATTCAAAATT 57.311 26.923 0.00 0.00 0.00 1.82
184 185 8.688747 TTAAAATCTGTGGGCATTCAAAATTT 57.311 26.923 0.00 0.00 0.00 1.82
185 186 6.563222 AAATCTGTGGGCATTCAAAATTTG 57.437 33.333 0.00 0.00 0.00 2.32
186 187 4.686191 TCTGTGGGCATTCAAAATTTGT 57.314 36.364 5.56 0.00 0.00 2.83
187 188 5.033589 TCTGTGGGCATTCAAAATTTGTT 57.966 34.783 5.56 0.00 0.00 2.83
188 189 5.055812 TCTGTGGGCATTCAAAATTTGTTC 58.944 37.500 5.56 0.00 0.00 3.18
189 190 4.774124 TGTGGGCATTCAAAATTTGTTCA 58.226 34.783 5.56 0.00 0.00 3.18
190 191 4.815308 TGTGGGCATTCAAAATTTGTTCAG 59.185 37.500 5.56 0.00 0.00 3.02
191 192 5.055812 GTGGGCATTCAAAATTTGTTCAGA 58.944 37.500 5.56 0.00 0.00 3.27
192 193 5.702209 GTGGGCATTCAAAATTTGTTCAGAT 59.298 36.000 5.56 0.00 0.00 2.90
193 194 6.205270 GTGGGCATTCAAAATTTGTTCAGATT 59.795 34.615 5.56 0.00 0.00 2.40
194 195 6.771749 TGGGCATTCAAAATTTGTTCAGATTT 59.228 30.769 5.56 0.00 0.00 2.17
195 196 7.041235 TGGGCATTCAAAATTTGTTCAGATTTC 60.041 33.333 5.56 0.00 0.00 2.17
196 197 7.173735 GGGCATTCAAAATTTGTTCAGATTTCT 59.826 33.333 5.56 0.00 0.00 2.52
197 198 8.562052 GGCATTCAAAATTTGTTCAGATTTCTT 58.438 29.630 5.56 0.00 0.00 2.52
198 199 9.940166 GCATTCAAAATTTGTTCAGATTTCTTT 57.060 25.926 5.56 0.00 0.00 2.52
220 221 9.904198 TCTTTTCAAAAGAAATCCCATTTTTCT 57.096 25.926 10.29 0.00 43.47 2.52
227 228 9.494271 AAAAGAAATCCCATTTTTCTAAAGAGC 57.506 29.630 0.00 0.00 41.38 4.09
228 229 6.856895 AGAAATCCCATTTTTCTAAAGAGCG 58.143 36.000 0.00 0.00 40.66 5.03
229 230 4.639135 ATCCCATTTTTCTAAAGAGCGC 57.361 40.909 0.00 0.00 0.00 5.92
230 231 2.418628 TCCCATTTTTCTAAAGAGCGCG 59.581 45.455 0.00 0.00 0.00 6.86
231 232 2.477863 CCCATTTTTCTAAAGAGCGCGG 60.478 50.000 8.83 0.00 0.00 6.46
232 233 2.177173 CATTTTTCTAAAGAGCGCGGC 58.823 47.619 8.83 0.00 0.00 6.53
233 234 1.519408 TTTTTCTAAAGAGCGCGGCT 58.481 45.000 8.83 5.31 43.88 5.52
234 235 2.373540 TTTTCTAAAGAGCGCGGCTA 57.626 45.000 8.83 0.00 39.88 3.93
235 236 2.373540 TTTCTAAAGAGCGCGGCTAA 57.626 45.000 8.83 0.00 39.88 3.09
236 237 2.373540 TTCTAAAGAGCGCGGCTAAA 57.626 45.000 8.83 0.00 39.88 1.85
237 238 2.373540 TCTAAAGAGCGCGGCTAAAA 57.626 45.000 8.83 0.00 39.88 1.52
238 239 2.901249 TCTAAAGAGCGCGGCTAAAAT 58.099 42.857 8.83 0.00 39.88 1.82
239 240 4.049546 TCTAAAGAGCGCGGCTAAAATA 57.950 40.909 8.83 0.00 39.88 1.40
240 241 4.628074 TCTAAAGAGCGCGGCTAAAATAT 58.372 39.130 8.83 0.00 39.88 1.28
241 242 5.775686 TCTAAAGAGCGCGGCTAAAATATA 58.224 37.500 8.83 0.00 39.88 0.86
242 243 4.992381 AAAGAGCGCGGCTAAAATATAG 57.008 40.909 8.83 0.00 39.88 1.31
243 244 3.662247 AGAGCGCGGCTAAAATATAGT 57.338 42.857 8.83 0.00 39.88 2.12
244 245 3.991367 AGAGCGCGGCTAAAATATAGTT 58.009 40.909 8.83 0.00 39.88 2.24
245 246 3.741344 AGAGCGCGGCTAAAATATAGTTG 59.259 43.478 8.83 0.00 39.88 3.16
246 247 3.463944 AGCGCGGCTAAAATATAGTTGT 58.536 40.909 8.83 0.00 36.99 3.32
247 248 3.875134 AGCGCGGCTAAAATATAGTTGTT 59.125 39.130 8.83 0.00 36.99 2.83
248 249 5.051816 AGCGCGGCTAAAATATAGTTGTTA 58.948 37.500 8.83 0.00 36.99 2.41
249 250 5.176958 AGCGCGGCTAAAATATAGTTGTTAG 59.823 40.000 8.83 0.00 36.99 2.34
250 251 5.176223 GCGCGGCTAAAATATAGTTGTTAGA 59.824 40.000 8.83 0.00 0.00 2.10
251 252 6.578691 CGCGGCTAAAATATAGTTGTTAGAC 58.421 40.000 0.00 0.00 0.00 2.59
252 253 6.199531 CGCGGCTAAAATATAGTTGTTAGACA 59.800 38.462 0.00 0.00 32.09 3.41
253 254 7.095774 CGCGGCTAAAATATAGTTGTTAGACAT 60.096 37.037 0.00 0.00 32.09 3.06
254 255 8.557029 GCGGCTAAAATATAGTTGTTAGACATT 58.443 33.333 0.00 0.00 32.09 2.71
260 261 7.766219 AATATAGTTGTTAGACATTTCGCGT 57.234 32.000 5.77 0.00 0.00 6.01
261 262 7.766219 ATATAGTTGTTAGACATTTCGCGTT 57.234 32.000 5.77 0.00 0.00 4.84
262 263 4.128554 AGTTGTTAGACATTTCGCGTTG 57.871 40.909 5.77 5.42 0.00 4.10
263 264 2.587612 TGTTAGACATTTCGCGTTGC 57.412 45.000 5.77 0.05 0.00 4.17
264 265 1.867865 TGTTAGACATTTCGCGTTGCA 59.132 42.857 5.77 0.00 0.00 4.08
265 266 2.288186 TGTTAGACATTTCGCGTTGCAA 59.712 40.909 5.77 0.00 0.00 4.08
266 267 3.058570 TGTTAGACATTTCGCGTTGCAAT 60.059 39.130 5.77 0.00 0.00 3.56
267 268 2.247311 AGACATTTCGCGTTGCAATC 57.753 45.000 5.77 0.00 0.00 2.67
268 269 1.806542 AGACATTTCGCGTTGCAATCT 59.193 42.857 5.77 0.64 0.00 2.40
269 270 2.226437 AGACATTTCGCGTTGCAATCTT 59.774 40.909 5.77 0.00 0.00 2.40
270 271 2.979813 GACATTTCGCGTTGCAATCTTT 59.020 40.909 5.77 0.00 0.00 2.52
271 272 3.380142 ACATTTCGCGTTGCAATCTTTT 58.620 36.364 5.77 0.00 0.00 2.27
272 273 3.425193 ACATTTCGCGTTGCAATCTTTTC 59.575 39.130 5.77 0.00 0.00 2.29
273 274 1.669184 TTCGCGTTGCAATCTTTTCG 58.331 45.000 5.77 0.79 0.00 3.46
274 275 0.110419 TCGCGTTGCAATCTTTTCGG 60.110 50.000 5.77 0.00 0.00 4.30
275 276 0.110419 CGCGTTGCAATCTTTTCGGA 60.110 50.000 0.59 0.00 0.00 4.55
276 277 1.661743 CGCGTTGCAATCTTTTCGGAA 60.662 47.619 0.59 0.00 0.00 4.30
277 278 1.978782 GCGTTGCAATCTTTTCGGAAG 59.021 47.619 0.59 0.00 0.00 3.46
278 279 2.584791 CGTTGCAATCTTTTCGGAAGG 58.415 47.619 0.59 0.00 0.00 3.46
279 280 2.668279 CGTTGCAATCTTTTCGGAAGGG 60.668 50.000 0.59 0.00 0.00 3.95
280 281 0.887933 TGCAATCTTTTCGGAAGGGC 59.112 50.000 0.00 0.00 0.00 5.19
281 282 1.177401 GCAATCTTTTCGGAAGGGCT 58.823 50.000 0.00 0.00 0.00 5.19
282 283 1.135286 GCAATCTTTTCGGAAGGGCTG 60.135 52.381 0.00 0.00 0.00 4.85
283 284 2.162681 CAATCTTTTCGGAAGGGCTGT 58.837 47.619 0.00 0.00 0.00 4.40
284 285 3.343617 CAATCTTTTCGGAAGGGCTGTA 58.656 45.455 0.00 0.00 0.00 2.74
285 286 3.933861 ATCTTTTCGGAAGGGCTGTAT 57.066 42.857 0.00 0.00 0.00 2.29
286 287 3.713826 TCTTTTCGGAAGGGCTGTATT 57.286 42.857 0.00 0.00 0.00 1.89
287 288 3.343617 TCTTTTCGGAAGGGCTGTATTG 58.656 45.455 0.00 0.00 0.00 1.90
288 289 2.122783 TTTCGGAAGGGCTGTATTGG 57.877 50.000 0.00 0.00 0.00 3.16
289 290 0.988832 TTCGGAAGGGCTGTATTGGT 59.011 50.000 0.00 0.00 0.00 3.67
290 291 0.251916 TCGGAAGGGCTGTATTGGTG 59.748 55.000 0.00 0.00 0.00 4.17
291 292 0.035439 CGGAAGGGCTGTATTGGTGT 60.035 55.000 0.00 0.00 0.00 4.16
292 293 1.208535 CGGAAGGGCTGTATTGGTGTA 59.791 52.381 0.00 0.00 0.00 2.90
293 294 2.640184 GGAAGGGCTGTATTGGTGTAC 58.360 52.381 0.00 0.00 0.00 2.90
294 295 2.238898 GGAAGGGCTGTATTGGTGTACT 59.761 50.000 0.00 0.00 0.00 2.73
295 296 3.270877 GAAGGGCTGTATTGGTGTACTG 58.729 50.000 0.00 0.00 0.00 2.74
296 297 1.559682 AGGGCTGTATTGGTGTACTGG 59.440 52.381 0.00 0.00 0.00 4.00
297 298 1.280998 GGGCTGTATTGGTGTACTGGT 59.719 52.381 0.00 0.00 0.00 4.00
298 299 2.290705 GGGCTGTATTGGTGTACTGGTT 60.291 50.000 0.00 0.00 0.00 3.67
299 300 3.054948 GGGCTGTATTGGTGTACTGGTTA 60.055 47.826 0.00 0.00 0.00 2.85
300 301 4.189231 GGCTGTATTGGTGTACTGGTTAG 58.811 47.826 0.00 0.00 0.00 2.34
301 302 4.189231 GCTGTATTGGTGTACTGGTTAGG 58.811 47.826 0.00 0.00 0.00 2.69
302 303 4.189231 CTGTATTGGTGTACTGGTTAGGC 58.811 47.826 0.00 0.00 0.00 3.93
303 304 3.583526 TGTATTGGTGTACTGGTTAGGCA 59.416 43.478 0.00 0.00 0.00 4.75
304 305 3.799432 ATTGGTGTACTGGTTAGGCAA 57.201 42.857 0.00 0.00 0.00 4.52
305 306 2.554370 TGGTGTACTGGTTAGGCAAC 57.446 50.000 0.00 0.00 0.00 4.17
318 319 4.487412 GCAACCATGCGCAGGAGC 62.487 66.667 25.72 22.69 43.83 4.70
325 326 4.146058 TGCGCAGGAGCATAATGG 57.854 55.556 5.66 0.00 42.92 3.16
326 327 1.224315 TGCGCAGGAGCATAATGGT 59.776 52.632 5.66 0.00 42.92 3.55
327 328 1.096967 TGCGCAGGAGCATAATGGTG 61.097 55.000 5.66 0.00 42.92 4.17
328 329 1.650912 CGCAGGAGCATAATGGTGC 59.349 57.895 0.00 0.00 45.38 5.01
335 336 1.355210 GCATAATGGTGCGGGTTCG 59.645 57.895 0.00 0.00 35.10 3.95
336 337 1.092921 GCATAATGGTGCGGGTTCGA 61.093 55.000 0.00 0.00 39.00 3.71
337 338 1.374560 CATAATGGTGCGGGTTCGAA 58.625 50.000 0.00 0.00 39.00 3.71
338 339 1.946768 CATAATGGTGCGGGTTCGAAT 59.053 47.619 0.00 0.00 39.00 3.34
339 340 1.658994 TAATGGTGCGGGTTCGAATC 58.341 50.000 0.00 0.00 39.00 2.52
340 341 1.029947 AATGGTGCGGGTTCGAATCC 61.030 55.000 18.00 18.00 39.00 3.01
345 346 3.564027 CGGGTTCGAATCCGCAGC 61.564 66.667 34.62 4.94 46.84 5.25
346 347 2.125106 GGGTTCGAATCCGCAGCT 60.125 61.111 12.63 0.00 35.37 4.24
347 348 1.745489 GGGTTCGAATCCGCAGCTT 60.745 57.895 12.63 0.00 35.37 3.74
348 349 1.706287 GGGTTCGAATCCGCAGCTTC 61.706 60.000 12.63 0.00 35.37 3.86
349 350 1.019278 GGTTCGAATCCGCAGCTTCA 61.019 55.000 0.00 0.00 35.37 3.02
350 351 1.009829 GTTCGAATCCGCAGCTTCAT 58.990 50.000 0.00 0.00 35.37 2.57
351 352 1.398390 GTTCGAATCCGCAGCTTCATT 59.602 47.619 0.00 0.00 35.37 2.57
352 353 1.737838 TCGAATCCGCAGCTTCATTT 58.262 45.000 0.00 0.00 35.37 2.32
353 354 1.398041 TCGAATCCGCAGCTTCATTTG 59.602 47.619 0.00 0.00 35.37 2.32
354 355 1.553308 GAATCCGCAGCTTCATTTGC 58.447 50.000 0.00 0.00 36.97 3.68
360 361 1.490621 GCAGCTTCATTTGCGTTTGT 58.509 45.000 0.00 0.00 35.28 2.83
361 362 1.860326 GCAGCTTCATTTGCGTTTGTT 59.140 42.857 0.00 0.00 35.28 2.83
362 363 2.284952 GCAGCTTCATTTGCGTTTGTTT 59.715 40.909 0.00 0.00 35.28 2.83
363 364 3.242381 GCAGCTTCATTTGCGTTTGTTTT 60.242 39.130 0.00 0.00 35.28 2.43
364 365 4.727448 GCAGCTTCATTTGCGTTTGTTTTT 60.727 37.500 0.00 0.00 35.28 1.94
386 387 8.741101 TTTTTCCTGTCATGAATACATTTTCG 57.259 30.769 0.00 0.00 34.15 3.46
387 388 5.484173 TCCTGTCATGAATACATTTTCGC 57.516 39.130 0.00 0.00 34.15 4.70
388 389 4.940654 TCCTGTCATGAATACATTTTCGCA 59.059 37.500 0.00 0.00 34.15 5.10
389 390 5.030295 CCTGTCATGAATACATTTTCGCAC 58.970 41.667 0.00 0.00 34.15 5.34
390 391 5.163723 CCTGTCATGAATACATTTTCGCACT 60.164 40.000 0.00 0.00 34.15 4.40
391 392 5.630061 TGTCATGAATACATTTTCGCACTG 58.370 37.500 0.00 0.00 34.15 3.66
392 393 5.411053 TGTCATGAATACATTTTCGCACTGA 59.589 36.000 0.00 0.00 34.15 3.41
393 394 5.734498 GTCATGAATACATTTTCGCACTGAC 59.266 40.000 0.00 0.00 34.15 3.51
394 395 4.678509 TGAATACATTTTCGCACTGACC 57.321 40.909 0.00 0.00 0.00 4.02
395 396 4.323417 TGAATACATTTTCGCACTGACCT 58.677 39.130 0.00 0.00 0.00 3.85
396 397 4.154015 TGAATACATTTTCGCACTGACCTG 59.846 41.667 0.00 0.00 0.00 4.00
397 398 0.593128 ACATTTTCGCACTGACCTGC 59.407 50.000 0.00 0.00 0.00 4.85
398 399 0.877071 CATTTTCGCACTGACCTGCT 59.123 50.000 0.00 0.00 34.77 4.24
399 400 0.877071 ATTTTCGCACTGACCTGCTG 59.123 50.000 0.00 0.00 34.77 4.41
400 401 0.463654 TTTTCGCACTGACCTGCTGT 60.464 50.000 0.00 0.00 34.77 4.40
401 402 0.463654 TTTCGCACTGACCTGCTGTT 60.464 50.000 0.00 0.00 34.77 3.16
402 403 0.880278 TTCGCACTGACCTGCTGTTC 60.880 55.000 0.00 0.00 34.77 3.18
403 404 1.595109 CGCACTGACCTGCTGTTCA 60.595 57.895 0.00 0.00 34.77 3.18
404 405 0.952497 CGCACTGACCTGCTGTTCAT 60.952 55.000 0.00 0.00 34.77 2.57
405 406 0.520404 GCACTGACCTGCTGTTCATG 59.480 55.000 0.00 0.00 34.06 3.07
406 407 1.162698 CACTGACCTGCTGTTCATGG 58.837 55.000 0.00 0.00 0.00 3.66
407 408 0.037303 ACTGACCTGCTGTTCATGGG 59.963 55.000 0.00 0.00 0.00 4.00
408 409 1.303561 TGACCTGCTGTTCATGGGC 60.304 57.895 0.00 0.00 0.00 5.36
409 410 2.036256 ACCTGCTGTTCATGGGCC 59.964 61.111 0.00 0.00 0.00 5.80
410 411 3.136123 CCTGCTGTTCATGGGCCG 61.136 66.667 0.00 0.00 0.00 6.13
411 412 3.136123 CTGCTGTTCATGGGCCGG 61.136 66.667 0.00 0.00 0.00 6.13
426 427 4.183686 CGGCCCATTCGCAAGCTG 62.184 66.667 0.00 0.00 37.18 4.24
427 428 4.503314 GGCCCATTCGCAAGCTGC 62.503 66.667 0.00 0.00 40.69 5.25
428 429 3.446570 GCCCATTCGCAAGCTGCT 61.447 61.111 0.00 0.00 42.25 4.24
429 430 2.488355 CCCATTCGCAAGCTGCTG 59.512 61.111 1.35 0.00 42.25 4.41
430 431 2.202570 CCATTCGCAAGCTGCTGC 60.203 61.111 1.35 7.62 42.25 5.25
437 438 4.400109 CAAGCTGCTGCGTGCCAG 62.400 66.667 17.44 0.00 45.42 4.85
438 439 4.943252 AAGCTGCTGCGTGCCAGT 62.943 61.111 1.35 0.00 43.71 4.00
439 440 4.943252 AGCTGCTGCGTGCCAGTT 62.943 61.111 10.14 0.00 43.71 3.16
440 441 4.695231 GCTGCTGCGTGCCAGTTG 62.695 66.667 0.00 0.00 43.71 3.16
441 442 4.695231 CTGCTGCGTGCCAGTTGC 62.695 66.667 0.00 0.00 43.71 4.17
448 449 4.645921 GTGCCAGTTGCGCCAACC 62.646 66.667 4.18 0.00 44.49 3.77
460 461 3.098555 CCAACCGGCGCATAAGTC 58.901 61.111 10.83 0.00 0.00 3.01
461 462 1.743623 CCAACCGGCGCATAAGTCA 60.744 57.895 10.83 0.00 0.00 3.41
462 463 1.095228 CCAACCGGCGCATAAGTCAT 61.095 55.000 10.83 0.00 0.00 3.06
463 464 0.027979 CAACCGGCGCATAAGTCATG 59.972 55.000 10.83 0.00 37.73 3.07
464 465 0.107897 AACCGGCGCATAAGTCATGA 60.108 50.000 10.83 0.00 36.69 3.07
465 466 0.107897 ACCGGCGCATAAGTCATGAA 60.108 50.000 10.83 0.00 36.69 2.57
466 467 1.229428 CCGGCGCATAAGTCATGAAT 58.771 50.000 10.83 0.00 36.69 2.57
467 468 2.224185 ACCGGCGCATAAGTCATGAATA 60.224 45.455 10.83 0.00 36.69 1.75
468 469 2.157668 CCGGCGCATAAGTCATGAATAC 59.842 50.000 10.83 0.00 36.69 1.89
469 470 2.799978 CGGCGCATAAGTCATGAATACA 59.200 45.455 10.83 0.00 36.69 2.29
470 471 3.433274 CGGCGCATAAGTCATGAATACAT 59.567 43.478 10.83 0.00 36.69 2.29
471 472 4.083855 CGGCGCATAAGTCATGAATACATT 60.084 41.667 10.83 0.00 36.69 2.71
472 473 5.560760 CGGCGCATAAGTCATGAATACATTT 60.561 40.000 10.83 0.00 36.69 2.32
473 474 6.208644 GGCGCATAAGTCATGAATACATTTT 58.791 36.000 10.83 0.00 36.69 1.82
474 475 6.360681 GGCGCATAAGTCATGAATACATTTTC 59.639 38.462 10.83 0.00 36.69 2.29
475 476 6.085458 GCGCATAAGTCATGAATACATTTTCG 59.915 38.462 0.30 0.00 36.69 3.46
476 477 6.085458 CGCATAAGTCATGAATACATTTTCGC 59.915 38.462 0.00 0.00 36.69 4.70
477 478 6.912051 GCATAAGTCATGAATACATTTTCGCA 59.088 34.615 0.00 0.00 36.69 5.10
478 479 7.096885 GCATAAGTCATGAATACATTTTCGCAC 60.097 37.037 0.00 0.00 36.69 5.34
479 480 6.500684 AAGTCATGAATACATTTTCGCACT 57.499 33.333 0.00 0.00 34.15 4.40
480 481 5.872635 AGTCATGAATACATTTTCGCACTG 58.127 37.500 0.00 0.00 34.15 3.66
481 482 5.643348 AGTCATGAATACATTTTCGCACTGA 59.357 36.000 0.00 0.00 34.15 3.41
482 483 5.734498 GTCATGAATACATTTTCGCACTGAC 59.266 40.000 0.00 0.00 34.15 3.51
483 484 4.678509 TGAATACATTTTCGCACTGACC 57.321 40.909 0.00 0.00 0.00 4.02
484 485 4.323417 TGAATACATTTTCGCACTGACCT 58.677 39.130 0.00 0.00 0.00 3.85
485 486 4.154015 TGAATACATTTTCGCACTGACCTG 59.846 41.667 0.00 0.00 0.00 4.00
486 487 0.593128 ACATTTTCGCACTGACCTGC 59.407 50.000 0.00 0.00 0.00 4.85
487 488 0.877071 CATTTTCGCACTGACCTGCT 59.123 50.000 0.00 0.00 34.77 4.24
488 489 0.877071 ATTTTCGCACTGACCTGCTG 59.123 50.000 0.00 0.00 34.77 4.41
489 490 0.463654 TTTTCGCACTGACCTGCTGT 60.464 50.000 0.00 0.00 34.77 4.40
490 491 0.463654 TTTCGCACTGACCTGCTGTT 60.464 50.000 0.00 0.00 34.77 3.16
491 492 0.880278 TTCGCACTGACCTGCTGTTC 60.880 55.000 0.00 0.00 34.77 3.18
492 493 1.595109 CGCACTGACCTGCTGTTCA 60.595 57.895 0.00 0.00 34.77 3.18
493 494 0.952497 CGCACTGACCTGCTGTTCAT 60.952 55.000 0.00 0.00 34.77 2.57
494 495 0.520404 GCACTGACCTGCTGTTCATG 59.480 55.000 0.00 0.00 34.06 3.07
495 496 1.162698 CACTGACCTGCTGTTCATGG 58.837 55.000 0.00 0.00 0.00 3.66
496 497 0.037303 ACTGACCTGCTGTTCATGGG 59.963 55.000 0.00 0.00 0.00 4.00
497 498 1.303561 TGACCTGCTGTTCATGGGC 60.304 57.895 0.00 0.00 0.00 5.36
498 499 2.036256 ACCTGCTGTTCATGGGCC 59.964 61.111 0.00 0.00 0.00 5.80
499 500 3.136123 CCTGCTGTTCATGGGCCG 61.136 66.667 0.00 0.00 0.00 6.13
500 501 3.136123 CTGCTGTTCATGGGCCGG 61.136 66.667 0.00 0.00 0.00 6.13
515 516 4.183686 CGGCCCATTCGCAAGCTG 62.184 66.667 0.00 0.00 37.18 4.24
516 517 4.503314 GGCCCATTCGCAAGCTGC 62.503 66.667 0.00 0.00 40.69 5.25
517 518 3.446570 GCCCATTCGCAAGCTGCT 61.447 61.111 0.00 0.00 42.25 4.24
518 519 2.488355 CCCATTCGCAAGCTGCTG 59.512 61.111 1.35 0.00 42.25 4.41
519 520 2.202570 CCATTCGCAAGCTGCTGC 60.203 61.111 1.35 7.62 42.25 5.25
526 527 4.400109 CAAGCTGCTGCGTGCCAG 62.400 66.667 17.44 0.00 45.42 4.85
527 528 4.943252 AAGCTGCTGCGTGCCAGT 62.943 61.111 1.35 0.00 43.71 4.00
528 529 4.943252 AGCTGCTGCGTGCCAGTT 62.943 61.111 10.14 0.00 43.71 3.16
529 530 4.695231 GCTGCTGCGTGCCAGTTG 62.695 66.667 0.00 0.00 43.71 3.16
530 531 4.695231 CTGCTGCGTGCCAGTTGC 62.695 66.667 0.00 0.00 43.71 4.17
537 538 4.645921 GTGCCAGTTGCGCCAACC 62.646 66.667 4.18 0.00 44.49 3.77
549 550 3.887868 CCAACCGGCGCATAAGGC 61.888 66.667 10.83 0.00 39.90 4.35
558 559 3.324035 GCATAAGGCGCCGAAGAG 58.676 61.111 23.20 12.61 0.00 2.85
559 560 2.247437 GCATAAGGCGCCGAAGAGG 61.247 63.158 23.20 10.48 44.97 3.69
560 561 1.441729 CATAAGGCGCCGAAGAGGA 59.558 57.895 23.20 2.36 45.00 3.71
561 562 0.598680 CATAAGGCGCCGAAGAGGAG 60.599 60.000 23.20 2.97 45.00 3.69
562 563 1.749334 ATAAGGCGCCGAAGAGGAGG 61.749 60.000 23.20 0.00 45.00 4.30
564 565 4.516195 GGCGCCGAAGAGGAGGTC 62.516 72.222 12.58 0.00 45.00 3.85
565 566 3.453679 GCGCCGAAGAGGAGGTCT 61.454 66.667 0.00 0.00 45.00 3.85
566 567 2.802106 CGCCGAAGAGGAGGTCTC 59.198 66.667 0.00 0.00 45.00 3.36
567 568 2.802106 GCCGAAGAGGAGGTCTCG 59.198 66.667 0.00 0.00 46.82 4.04
568 569 2.802106 CCGAAGAGGAGGTCTCGC 59.198 66.667 0.00 0.00 46.82 5.03
569 570 2.776913 CCGAAGAGGAGGTCTCGCC 61.777 68.421 0.00 0.00 46.82 5.54
570 571 2.776913 CGAAGAGGAGGTCTCGCCC 61.777 68.421 0.00 0.00 46.82 6.13
571 572 2.756283 AAGAGGAGGTCTCGCCCG 60.756 66.667 0.00 0.00 46.82 6.13
572 573 3.587170 AAGAGGAGGTCTCGCCCGT 62.587 63.158 0.00 0.00 46.82 5.28
573 574 2.124403 GAGGAGGTCTCGCCCGTA 60.124 66.667 0.00 0.00 38.26 4.02
574 575 2.124236 AGGAGGTCTCGCCCGTAG 60.124 66.667 0.00 0.00 38.26 3.51
575 576 3.902086 GGAGGTCTCGCCCGTAGC 61.902 72.222 0.00 0.00 38.26 3.58
576 577 2.829458 GAGGTCTCGCCCGTAGCT 60.829 66.667 0.00 0.00 40.39 3.32
577 578 3.127352 GAGGTCTCGCCCGTAGCTG 62.127 68.421 0.00 0.00 40.39 4.24
578 579 3.450115 GGTCTCGCCCGTAGCTGT 61.450 66.667 0.00 0.00 40.39 4.40
579 580 2.117156 GGTCTCGCCCGTAGCTGTA 61.117 63.158 0.00 0.00 40.39 2.74
580 581 1.355916 GTCTCGCCCGTAGCTGTAG 59.644 63.158 0.00 0.00 40.39 2.74
581 582 2.026301 CTCGCCCGTAGCTGTAGC 59.974 66.667 0.00 0.00 40.39 3.58
582 583 2.752640 TCGCCCGTAGCTGTAGCA 60.753 61.111 6.65 0.00 45.16 3.49
583 584 2.183300 CGCCCGTAGCTGTAGCAA 59.817 61.111 6.65 0.00 45.16 3.91
611 612 1.750399 GTCTGATTGGGCCACGCAT 60.750 57.895 5.23 0.00 0.00 4.73
763 964 7.133891 TGCTGCTTCTTCTTATACAAAAGAC 57.866 36.000 0.00 0.00 35.25 3.01
806 1014 5.335583 CGAGGTAAAGTTTTTGATGCATCCA 60.336 40.000 23.67 10.57 0.00 3.41
896 1106 5.460419 CGTCTTCTTCTACCATGCATTCTAC 59.540 44.000 0.00 0.00 0.00 2.59
897 1107 6.578023 GTCTTCTTCTACCATGCATTCTACT 58.422 40.000 0.00 0.00 0.00 2.57
898 1108 7.468768 CGTCTTCTTCTACCATGCATTCTACTA 60.469 40.741 0.00 0.00 0.00 1.82
899 1109 7.865385 GTCTTCTTCTACCATGCATTCTACTAG 59.135 40.741 0.00 0.00 0.00 2.57
935 1147 2.801342 GCCCTTCTCGATCTAGTGCTTG 60.801 54.545 0.00 0.00 0.00 4.01
940 2831 5.163913 CCTTCTCGATCTAGTGCTTGTTTTG 60.164 44.000 0.00 0.00 0.00 2.44
943 2834 5.862323 TCTCGATCTAGTGCTTGTTTTGTAC 59.138 40.000 0.00 0.00 0.00 2.90
945 2836 5.404366 TCGATCTAGTGCTTGTTTTGTACAC 59.596 40.000 0.00 0.00 36.21 2.90
1110 4057 0.248539 GCGACCTGACGGACTATGTC 60.249 60.000 0.00 0.00 36.88 3.06
1185 4220 1.382522 GTGGCATCATTGATCCACGT 58.617 50.000 21.73 0.00 39.46 4.49
1293 4328 3.460340 TCAACCTTGACTCTGGGGTTTTA 59.540 43.478 0.00 0.00 39.67 1.52
1380 4415 2.202362 CAGCGAGACGAGGACACG 60.202 66.667 0.00 0.00 39.31 4.49
1801 4856 6.808321 ACCCTGTCTATTTAGTAGAATGCA 57.192 37.500 0.00 0.00 41.00 3.96
1864 4919 2.210116 CACACCTCGCAGTTTACAAGT 58.790 47.619 0.00 0.00 0.00 3.16
1882 4937 8.988064 TTACAAGTTTGCAGATGTTGTTTTAA 57.012 26.923 11.59 1.18 33.50 1.52
1899 4954 8.306038 GTTGTTTTAAATAGGTTTATCCGGGTT 58.694 33.333 0.00 0.00 41.99 4.11
1918 4973 4.157840 GGGTTAAAAGCATCGGAGACAAAT 59.842 41.667 0.00 0.00 42.51 2.32
2030 5088 7.279981 ACGAGAGCAACATTTTATGCAATACTA 59.720 33.333 0.00 0.00 44.95 1.82
2119 5190 4.322080 TGTAGCCTTATTCTCCATGTCG 57.678 45.455 0.00 0.00 0.00 4.35
2149 5220 2.233676 TGCTCACGTGATCACTGGTATT 59.766 45.455 20.40 0.00 0.00 1.89
2548 5626 4.558226 ACAAGTGGTATCATGAGCAAGA 57.442 40.909 0.09 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 9.804547 CTTTTGAAAAAGTTCATCGTTTTTGAA 57.195 25.926 7.27 0.00 43.29 2.69
80 81 5.584253 TGGAGTTCATCGGTTTTCAAAAA 57.416 34.783 0.00 0.00 0.00 1.94
81 82 5.584253 TTGGAGTTCATCGGTTTTCAAAA 57.416 34.783 0.00 0.00 0.00 2.44
82 83 5.782893 ATTGGAGTTCATCGGTTTTCAAA 57.217 34.783 0.00 0.00 0.00 2.69
83 84 5.782893 AATTGGAGTTCATCGGTTTTCAA 57.217 34.783 0.00 0.00 0.00 2.69
84 85 5.782893 AAATTGGAGTTCATCGGTTTTCA 57.217 34.783 0.00 0.00 0.00 2.69
85 86 8.647226 CATAAAAATTGGAGTTCATCGGTTTTC 58.353 33.333 0.00 0.00 0.00 2.29
86 87 8.364142 TCATAAAAATTGGAGTTCATCGGTTTT 58.636 29.630 0.00 0.00 0.00 2.43
87 88 7.891561 TCATAAAAATTGGAGTTCATCGGTTT 58.108 30.769 0.00 0.00 0.00 3.27
88 89 7.461182 TCATAAAAATTGGAGTTCATCGGTT 57.539 32.000 0.00 0.00 0.00 4.44
89 90 7.176690 AGTTCATAAAAATTGGAGTTCATCGGT 59.823 33.333 0.00 0.00 0.00 4.69
90 91 7.538575 AGTTCATAAAAATTGGAGTTCATCGG 58.461 34.615 0.00 0.00 0.00 4.18
91 92 8.970691 AAGTTCATAAAAATTGGAGTTCATCG 57.029 30.769 0.00 0.00 0.00 3.84
133 134 9.810545 AAAAACATCACGAATTAGAAGGAAAAA 57.189 25.926 0.00 0.00 0.00 1.94
156 157 8.511604 TTTTGAATGCCCACAGATTTTAAAAA 57.488 26.923 4.44 0.00 0.00 1.94
157 158 8.688747 ATTTTGAATGCCCACAGATTTTAAAA 57.311 26.923 2.51 2.51 0.00 1.52
158 159 8.688747 AATTTTGAATGCCCACAGATTTTAAA 57.311 26.923 0.00 0.00 0.00 1.52
159 160 8.566260 CAAATTTTGAATGCCCACAGATTTTAA 58.434 29.630 2.88 0.00 0.00 1.52
160 161 7.718753 ACAAATTTTGAATGCCCACAGATTTTA 59.281 29.630 15.81 0.00 0.00 1.52
161 162 6.546772 ACAAATTTTGAATGCCCACAGATTTT 59.453 30.769 15.81 0.00 0.00 1.82
162 163 6.063404 ACAAATTTTGAATGCCCACAGATTT 58.937 32.000 15.81 0.00 0.00 2.17
163 164 5.623169 ACAAATTTTGAATGCCCACAGATT 58.377 33.333 15.81 0.00 0.00 2.40
164 165 5.231702 ACAAATTTTGAATGCCCACAGAT 57.768 34.783 15.81 0.00 0.00 2.90
165 166 4.686191 ACAAATTTTGAATGCCCACAGA 57.314 36.364 15.81 0.00 0.00 3.41
166 167 4.815308 TGAACAAATTTTGAATGCCCACAG 59.185 37.500 15.81 0.00 0.00 3.66
167 168 4.774124 TGAACAAATTTTGAATGCCCACA 58.226 34.783 15.81 2.05 0.00 4.17
168 169 5.055812 TCTGAACAAATTTTGAATGCCCAC 58.944 37.500 15.81 0.00 0.00 4.61
169 170 5.287674 TCTGAACAAATTTTGAATGCCCA 57.712 34.783 15.81 3.79 0.00 5.36
170 171 6.806388 AATCTGAACAAATTTTGAATGCCC 57.194 33.333 15.81 0.00 0.00 5.36
171 172 8.091385 AGAAATCTGAACAAATTTTGAATGCC 57.909 30.769 15.81 1.33 0.00 4.40
172 173 9.940166 AAAGAAATCTGAACAAATTTTGAATGC 57.060 25.926 15.81 3.02 0.00 3.56
201 202 9.494271 GCTCTTTAGAAAAATGGGATTTCTTTT 57.506 29.630 6.81 0.00 42.85 2.27
202 203 7.814587 CGCTCTTTAGAAAAATGGGATTTCTTT 59.185 33.333 6.81 0.00 42.85 2.52
203 204 7.315890 CGCTCTTTAGAAAAATGGGATTTCTT 58.684 34.615 6.81 0.00 42.85 2.52
204 205 6.625960 GCGCTCTTTAGAAAAATGGGATTTCT 60.626 38.462 0.00 6.73 46.11 2.52
205 206 5.516696 GCGCTCTTTAGAAAAATGGGATTTC 59.483 40.000 0.00 0.00 37.11 2.17
206 207 5.410924 GCGCTCTTTAGAAAAATGGGATTT 58.589 37.500 0.00 0.00 0.00 2.17
207 208 4.438744 CGCGCTCTTTAGAAAAATGGGATT 60.439 41.667 5.56 0.00 0.00 3.01
208 209 3.065371 CGCGCTCTTTAGAAAAATGGGAT 59.935 43.478 5.56 0.00 0.00 3.85
209 210 2.418628 CGCGCTCTTTAGAAAAATGGGA 59.581 45.455 5.56 0.00 0.00 4.37
210 211 2.477863 CCGCGCTCTTTAGAAAAATGGG 60.478 50.000 5.56 0.00 0.00 4.00
211 212 2.785679 CCGCGCTCTTTAGAAAAATGG 58.214 47.619 5.56 0.00 0.00 3.16
212 213 2.159517 AGCCGCGCTCTTTAGAAAAATG 60.160 45.455 5.56 0.00 30.62 2.32
213 214 2.084546 AGCCGCGCTCTTTAGAAAAAT 58.915 42.857 5.56 0.00 30.62 1.82
214 215 1.519408 AGCCGCGCTCTTTAGAAAAA 58.481 45.000 5.56 0.00 30.62 1.94
215 216 2.373540 TAGCCGCGCTCTTTAGAAAA 57.626 45.000 5.56 0.00 40.44 2.29
216 217 2.373540 TTAGCCGCGCTCTTTAGAAA 57.626 45.000 5.56 0.00 40.44 2.52
217 218 2.373540 TTTAGCCGCGCTCTTTAGAA 57.626 45.000 5.56 0.00 40.44 2.10
218 219 2.373540 TTTTAGCCGCGCTCTTTAGA 57.626 45.000 5.56 0.00 40.44 2.10
219 220 4.992381 ATATTTTAGCCGCGCTCTTTAG 57.008 40.909 5.56 0.00 40.44 1.85
220 221 5.535333 ACTATATTTTAGCCGCGCTCTTTA 58.465 37.500 5.56 0.00 40.44 1.85
221 222 4.377897 ACTATATTTTAGCCGCGCTCTTT 58.622 39.130 5.56 0.00 40.44 2.52
222 223 3.991367 ACTATATTTTAGCCGCGCTCTT 58.009 40.909 5.56 0.00 40.44 2.85
223 224 3.662247 ACTATATTTTAGCCGCGCTCT 57.338 42.857 5.56 4.92 40.44 4.09
224 225 3.493503 ACAACTATATTTTAGCCGCGCTC 59.506 43.478 5.56 0.00 40.44 5.03
225 226 3.463944 ACAACTATATTTTAGCCGCGCT 58.536 40.909 5.56 4.15 43.41 5.92
226 227 3.872560 ACAACTATATTTTAGCCGCGC 57.127 42.857 0.00 0.00 0.00 6.86
227 228 6.199531 TGTCTAACAACTATATTTTAGCCGCG 59.800 38.462 0.00 0.00 0.00 6.46
228 229 7.473027 TGTCTAACAACTATATTTTAGCCGC 57.527 36.000 0.00 0.00 0.00 6.53
234 235 8.662141 ACGCGAAATGTCTAACAACTATATTTT 58.338 29.630 15.93 0.00 0.00 1.82
235 236 8.193250 ACGCGAAATGTCTAACAACTATATTT 57.807 30.769 15.93 0.00 0.00 1.40
236 237 7.766219 ACGCGAAATGTCTAACAACTATATT 57.234 32.000 15.93 0.00 0.00 1.28
237 238 7.618442 CAACGCGAAATGTCTAACAACTATAT 58.382 34.615 15.93 0.00 0.00 0.86
238 239 6.454583 GCAACGCGAAATGTCTAACAACTATA 60.455 38.462 15.93 0.00 0.00 1.31
239 240 5.670341 GCAACGCGAAATGTCTAACAACTAT 60.670 40.000 15.93 0.00 0.00 2.12
240 241 4.376615 GCAACGCGAAATGTCTAACAACTA 60.377 41.667 15.93 0.00 0.00 2.24
241 242 3.606153 GCAACGCGAAATGTCTAACAACT 60.606 43.478 15.93 0.00 0.00 3.16
242 243 2.650297 GCAACGCGAAATGTCTAACAAC 59.350 45.455 15.93 0.00 0.00 3.32
243 244 2.288186 TGCAACGCGAAATGTCTAACAA 59.712 40.909 15.93 0.00 0.00 2.83
244 245 1.867865 TGCAACGCGAAATGTCTAACA 59.132 42.857 15.93 0.00 0.00 2.41
245 246 2.587612 TGCAACGCGAAATGTCTAAC 57.412 45.000 15.93 0.00 0.00 2.34
246 247 3.435327 AGATTGCAACGCGAAATGTCTAA 59.565 39.130 15.93 6.67 0.00 2.10
247 248 3.000041 AGATTGCAACGCGAAATGTCTA 59.000 40.909 15.93 3.19 0.00 2.59
248 249 1.806542 AGATTGCAACGCGAAATGTCT 59.193 42.857 15.93 5.97 0.00 3.41
249 250 2.247311 AGATTGCAACGCGAAATGTC 57.753 45.000 15.93 3.45 0.00 3.06
250 251 2.704725 AAGATTGCAACGCGAAATGT 57.295 40.000 15.93 2.70 0.00 2.71
251 252 3.478598 CGAAAAGATTGCAACGCGAAATG 60.479 43.478 15.93 10.19 0.00 2.32
252 253 2.656422 CGAAAAGATTGCAACGCGAAAT 59.344 40.909 15.93 6.97 0.00 2.17
253 254 2.040524 CGAAAAGATTGCAACGCGAAA 58.959 42.857 15.93 1.40 0.00 3.46
254 255 1.661743 CCGAAAAGATTGCAACGCGAA 60.662 47.619 15.93 0.00 0.00 4.70
255 256 0.110419 CCGAAAAGATTGCAACGCGA 60.110 50.000 15.93 0.00 0.00 5.87
256 257 0.110419 TCCGAAAAGATTGCAACGCG 60.110 50.000 3.53 3.53 0.00 6.01
257 258 1.978782 CTTCCGAAAAGATTGCAACGC 59.021 47.619 0.00 0.00 0.00 4.84
258 259 2.584791 CCTTCCGAAAAGATTGCAACG 58.415 47.619 0.00 0.00 0.00 4.10
259 260 2.926586 GCCCTTCCGAAAAGATTGCAAC 60.927 50.000 0.00 0.00 0.00 4.17
260 261 1.272212 GCCCTTCCGAAAAGATTGCAA 59.728 47.619 0.00 0.00 0.00 4.08
261 262 0.887933 GCCCTTCCGAAAAGATTGCA 59.112 50.000 0.00 0.00 0.00 4.08
262 263 1.135286 CAGCCCTTCCGAAAAGATTGC 60.135 52.381 0.00 0.00 0.00 3.56
263 264 2.162681 ACAGCCCTTCCGAAAAGATTG 58.837 47.619 0.00 0.00 0.00 2.67
264 265 2.586648 ACAGCCCTTCCGAAAAGATT 57.413 45.000 0.00 0.00 0.00 2.40
265 266 3.933861 ATACAGCCCTTCCGAAAAGAT 57.066 42.857 0.00 0.00 0.00 2.40
266 267 3.343617 CAATACAGCCCTTCCGAAAAGA 58.656 45.455 0.00 0.00 0.00 2.52
267 268 2.423538 CCAATACAGCCCTTCCGAAAAG 59.576 50.000 0.00 0.00 0.00 2.27
268 269 2.224917 ACCAATACAGCCCTTCCGAAAA 60.225 45.455 0.00 0.00 0.00 2.29
269 270 1.353022 ACCAATACAGCCCTTCCGAAA 59.647 47.619 0.00 0.00 0.00 3.46
270 271 0.988832 ACCAATACAGCCCTTCCGAA 59.011 50.000 0.00 0.00 0.00 4.30
271 272 0.251916 CACCAATACAGCCCTTCCGA 59.748 55.000 0.00 0.00 0.00 4.55
272 273 0.035439 ACACCAATACAGCCCTTCCG 60.035 55.000 0.00 0.00 0.00 4.30
273 274 2.238898 AGTACACCAATACAGCCCTTCC 59.761 50.000 0.00 0.00 0.00 3.46
274 275 3.270877 CAGTACACCAATACAGCCCTTC 58.729 50.000 0.00 0.00 0.00 3.46
275 276 2.026262 CCAGTACACCAATACAGCCCTT 60.026 50.000 0.00 0.00 0.00 3.95
276 277 1.559682 CCAGTACACCAATACAGCCCT 59.440 52.381 0.00 0.00 0.00 5.19
277 278 1.280998 ACCAGTACACCAATACAGCCC 59.719 52.381 0.00 0.00 0.00 5.19
278 279 2.781681 ACCAGTACACCAATACAGCC 57.218 50.000 0.00 0.00 0.00 4.85
279 280 4.189231 CCTAACCAGTACACCAATACAGC 58.811 47.826 0.00 0.00 0.00 4.40
280 281 4.189231 GCCTAACCAGTACACCAATACAG 58.811 47.826 0.00 0.00 0.00 2.74
281 282 3.583526 TGCCTAACCAGTACACCAATACA 59.416 43.478 0.00 0.00 0.00 2.29
282 283 4.210724 TGCCTAACCAGTACACCAATAC 57.789 45.455 0.00 0.00 0.00 1.89
283 284 4.581868 GTTGCCTAACCAGTACACCAATA 58.418 43.478 0.00 0.00 0.00 1.90
284 285 3.418047 GTTGCCTAACCAGTACACCAAT 58.582 45.455 0.00 0.00 0.00 3.16
285 286 2.853705 GTTGCCTAACCAGTACACCAA 58.146 47.619 0.00 0.00 0.00 3.67
286 287 2.554370 GTTGCCTAACCAGTACACCA 57.446 50.000 0.00 0.00 0.00 4.17
296 297 1.137404 CTGCGCATGGTTGCCTAAC 59.863 57.895 12.24 0.00 46.57 2.34
297 298 2.045708 CCTGCGCATGGTTGCCTAA 61.046 57.895 12.24 0.00 46.57 2.69
298 299 2.438254 CCTGCGCATGGTTGCCTA 60.438 61.111 12.24 0.00 46.57 3.93
299 300 4.349503 TCCTGCGCATGGTTGCCT 62.350 61.111 12.24 0.00 46.57 4.75
300 301 3.818787 CTCCTGCGCATGGTTGCC 61.819 66.667 12.24 0.00 46.57 4.52
301 302 4.487412 GCTCCTGCGCATGGTTGC 62.487 66.667 12.24 17.85 45.78 4.17
302 303 3.057548 TGCTCCTGCGCATGGTTG 61.058 61.111 12.24 12.66 43.34 3.77
308 309 1.096967 CACCATTATGCTCCTGCGCA 61.097 55.000 10.98 10.98 45.10 6.09
309 310 1.650912 CACCATTATGCTCCTGCGC 59.349 57.895 0.00 0.00 43.34 6.09
310 311 1.650912 GCACCATTATGCTCCTGCG 59.349 57.895 0.00 0.00 42.62 5.18
311 312 1.650912 CGCACCATTATGCTCCTGC 59.349 57.895 0.00 0.00 43.80 4.85
312 313 1.168407 CCCGCACCATTATGCTCCTG 61.168 60.000 0.00 0.00 43.80 3.86
313 314 1.149174 CCCGCACCATTATGCTCCT 59.851 57.895 0.00 0.00 43.80 3.69
314 315 0.751643 AACCCGCACCATTATGCTCC 60.752 55.000 0.00 0.00 43.80 4.70
315 316 0.663153 GAACCCGCACCATTATGCTC 59.337 55.000 0.00 0.00 43.80 4.26
316 317 1.095228 CGAACCCGCACCATTATGCT 61.095 55.000 0.00 0.00 43.80 3.79
317 318 1.092921 TCGAACCCGCACCATTATGC 61.093 55.000 0.00 0.00 42.48 3.14
318 319 1.374560 TTCGAACCCGCACCATTATG 58.625 50.000 0.00 0.00 35.37 1.90
319 320 2.218603 GATTCGAACCCGCACCATTAT 58.781 47.619 0.00 0.00 35.37 1.28
320 321 1.658994 GATTCGAACCCGCACCATTA 58.341 50.000 0.00 0.00 35.37 1.90
321 322 1.029947 GGATTCGAACCCGCACCATT 61.030 55.000 0.00 0.00 35.37 3.16
322 323 1.451387 GGATTCGAACCCGCACCAT 60.451 57.895 0.00 0.00 35.37 3.55
323 324 2.046700 GGATTCGAACCCGCACCA 60.047 61.111 0.00 0.00 35.37 4.17
324 325 3.192922 CGGATTCGAACCCGCACC 61.193 66.667 19.94 5.73 39.22 5.01
329 330 1.706287 GAAGCTGCGGATTCGAACCC 61.706 60.000 7.94 0.00 39.00 4.11
330 331 1.019278 TGAAGCTGCGGATTCGAACC 61.019 55.000 18.10 3.22 40.35 3.62
331 332 1.009829 ATGAAGCTGCGGATTCGAAC 58.990 50.000 18.10 0.00 40.35 3.95
332 333 1.737838 AATGAAGCTGCGGATTCGAA 58.262 45.000 18.10 0.00 40.35 3.71
333 334 1.398041 CAAATGAAGCTGCGGATTCGA 59.602 47.619 18.10 8.35 40.35 3.71
334 335 1.818850 CAAATGAAGCTGCGGATTCG 58.181 50.000 18.10 0.56 40.35 3.34
335 336 1.553308 GCAAATGAAGCTGCGGATTC 58.447 50.000 16.64 16.64 38.23 2.52
336 337 3.727419 GCAAATGAAGCTGCGGATT 57.273 47.368 0.00 0.00 0.00 3.01
341 342 1.490621 ACAAACGCAAATGAAGCTGC 58.509 45.000 0.00 0.00 35.14 5.25
342 343 4.519191 AAAACAAACGCAAATGAAGCTG 57.481 36.364 0.00 0.00 0.00 4.24
361 362 7.328249 GCGAAAATGTATTCATGACAGGAAAAA 59.672 33.333 6.63 0.00 34.19 1.94
362 363 6.806249 GCGAAAATGTATTCATGACAGGAAAA 59.194 34.615 6.63 0.00 34.19 2.29
363 364 6.072230 TGCGAAAATGTATTCATGACAGGAAA 60.072 34.615 6.63 0.00 34.19 3.13
364 365 5.414144 TGCGAAAATGTATTCATGACAGGAA 59.586 36.000 4.82 4.82 34.19 3.36
365 366 4.940654 TGCGAAAATGTATTCATGACAGGA 59.059 37.500 0.00 0.00 34.19 3.86
366 367 5.030295 GTGCGAAAATGTATTCATGACAGG 58.970 41.667 0.00 0.00 34.19 4.00
367 368 5.735892 CAGTGCGAAAATGTATTCATGACAG 59.264 40.000 0.00 0.00 34.19 3.51
368 369 5.411053 TCAGTGCGAAAATGTATTCATGACA 59.589 36.000 0.00 0.00 34.19 3.58
369 370 5.734498 GTCAGTGCGAAAATGTATTCATGAC 59.266 40.000 0.00 0.00 34.19 3.06
370 371 5.163764 GGTCAGTGCGAAAATGTATTCATGA 60.164 40.000 0.00 0.00 34.19 3.07
371 372 5.030295 GGTCAGTGCGAAAATGTATTCATG 58.970 41.667 0.00 0.00 34.19 3.07
372 373 4.943705 AGGTCAGTGCGAAAATGTATTCAT 59.056 37.500 0.00 0.00 35.59 2.57
373 374 4.154015 CAGGTCAGTGCGAAAATGTATTCA 59.846 41.667 0.00 0.00 0.00 2.57
374 375 4.651994 CAGGTCAGTGCGAAAATGTATTC 58.348 43.478 0.00 0.00 0.00 1.75
375 376 3.119849 GCAGGTCAGTGCGAAAATGTATT 60.120 43.478 0.00 0.00 32.74 1.89
376 377 2.420022 GCAGGTCAGTGCGAAAATGTAT 59.580 45.455 0.00 0.00 32.74 2.29
377 378 1.804151 GCAGGTCAGTGCGAAAATGTA 59.196 47.619 0.00 0.00 32.74 2.29
378 379 0.593128 GCAGGTCAGTGCGAAAATGT 59.407 50.000 0.00 0.00 32.74 2.71
379 380 3.389741 GCAGGTCAGTGCGAAAATG 57.610 52.632 0.00 0.00 32.74 2.32
386 387 0.520404 CATGAACAGCAGGTCAGTGC 59.480 55.000 2.44 0.00 44.35 4.40
387 388 1.162698 CCATGAACAGCAGGTCAGTG 58.837 55.000 2.44 1.80 0.00 3.66
388 389 0.037303 CCCATGAACAGCAGGTCAGT 59.963 55.000 2.44 0.00 0.00 3.41
389 390 1.310933 GCCCATGAACAGCAGGTCAG 61.311 60.000 2.44 0.00 0.00 3.51
390 391 1.303561 GCCCATGAACAGCAGGTCA 60.304 57.895 0.00 0.00 0.00 4.02
391 392 2.048603 GGCCCATGAACAGCAGGTC 61.049 63.158 0.00 0.00 0.00 3.85
392 393 2.036256 GGCCCATGAACAGCAGGT 59.964 61.111 0.00 0.00 0.00 4.00
393 394 3.136123 CGGCCCATGAACAGCAGG 61.136 66.667 0.00 0.00 0.00 4.85
394 395 3.136123 CCGGCCCATGAACAGCAG 61.136 66.667 0.00 0.00 0.00 4.24
409 410 4.183686 CAGCTTGCGAATGGGCCG 62.184 66.667 0.00 0.00 0.00 6.13
410 411 4.503314 GCAGCTTGCGAATGGGCC 62.503 66.667 0.00 0.00 31.71 5.80
430 431 4.980903 GTTGGCGCAACTGGCACG 62.981 66.667 10.83 0.00 44.88 5.34
431 432 4.645921 GGTTGGCGCAACTGGCAC 62.646 66.667 10.83 0.00 44.88 5.01
443 444 1.095228 ATGACTTATGCGCCGGTTGG 61.095 55.000 4.18 0.00 38.77 3.77
444 445 0.027979 CATGACTTATGCGCCGGTTG 59.972 55.000 4.18 0.00 0.00 3.77
445 446 0.107897 TCATGACTTATGCGCCGGTT 60.108 50.000 4.18 0.00 36.70 4.44
446 447 0.107897 TTCATGACTTATGCGCCGGT 60.108 50.000 4.18 0.00 36.70 5.28
447 448 1.229428 ATTCATGACTTATGCGCCGG 58.771 50.000 4.18 0.00 36.70 6.13
448 449 2.799978 TGTATTCATGACTTATGCGCCG 59.200 45.455 4.18 0.00 36.70 6.46
449 450 5.362556 AATGTATTCATGACTTATGCGCC 57.637 39.130 4.18 0.00 36.70 6.53
450 451 6.085458 CGAAAATGTATTCATGACTTATGCGC 59.915 38.462 0.00 0.00 36.70 6.09
451 452 6.085458 GCGAAAATGTATTCATGACTTATGCG 59.915 38.462 0.00 0.00 36.70 4.73
452 453 6.912051 TGCGAAAATGTATTCATGACTTATGC 59.088 34.615 0.00 0.00 36.70 3.14
453 454 8.124823 AGTGCGAAAATGTATTCATGACTTATG 58.875 33.333 0.00 0.00 38.17 1.90
454 455 8.124823 CAGTGCGAAAATGTATTCATGACTTAT 58.875 33.333 0.00 0.00 34.19 1.73
455 456 7.333174 TCAGTGCGAAAATGTATTCATGACTTA 59.667 33.333 0.00 0.00 34.19 2.24
456 457 6.149308 TCAGTGCGAAAATGTATTCATGACTT 59.851 34.615 0.00 0.00 34.19 3.01
457 458 5.643348 TCAGTGCGAAAATGTATTCATGACT 59.357 36.000 0.00 0.00 34.19 3.41
458 459 5.734498 GTCAGTGCGAAAATGTATTCATGAC 59.266 40.000 0.00 0.00 34.19 3.06
459 460 5.163764 GGTCAGTGCGAAAATGTATTCATGA 60.164 40.000 0.00 0.00 34.19 3.07
460 461 5.030295 GGTCAGTGCGAAAATGTATTCATG 58.970 41.667 0.00 0.00 34.19 3.07
461 462 4.943705 AGGTCAGTGCGAAAATGTATTCAT 59.056 37.500 0.00 0.00 35.59 2.57
462 463 4.154015 CAGGTCAGTGCGAAAATGTATTCA 59.846 41.667 0.00 0.00 0.00 2.57
463 464 4.651994 CAGGTCAGTGCGAAAATGTATTC 58.348 43.478 0.00 0.00 0.00 1.75
464 465 3.119849 GCAGGTCAGTGCGAAAATGTATT 60.120 43.478 0.00 0.00 32.74 1.89
465 466 2.420022 GCAGGTCAGTGCGAAAATGTAT 59.580 45.455 0.00 0.00 32.74 2.29
466 467 1.804151 GCAGGTCAGTGCGAAAATGTA 59.196 47.619 0.00 0.00 32.74 2.29
467 468 0.593128 GCAGGTCAGTGCGAAAATGT 59.407 50.000 0.00 0.00 32.74 2.71
468 469 3.389741 GCAGGTCAGTGCGAAAATG 57.610 52.632 0.00 0.00 32.74 2.32
475 476 0.520404 CATGAACAGCAGGTCAGTGC 59.480 55.000 2.44 0.00 44.35 4.40
476 477 1.162698 CCATGAACAGCAGGTCAGTG 58.837 55.000 2.44 1.80 0.00 3.66
477 478 0.037303 CCCATGAACAGCAGGTCAGT 59.963 55.000 2.44 0.00 0.00 3.41
478 479 1.310933 GCCCATGAACAGCAGGTCAG 61.311 60.000 2.44 0.00 0.00 3.51
479 480 1.303561 GCCCATGAACAGCAGGTCA 60.304 57.895 0.00 0.00 0.00 4.02
480 481 2.048603 GGCCCATGAACAGCAGGTC 61.049 63.158 0.00 0.00 0.00 3.85
481 482 2.036256 GGCCCATGAACAGCAGGT 59.964 61.111 0.00 0.00 0.00 4.00
482 483 3.136123 CGGCCCATGAACAGCAGG 61.136 66.667 0.00 0.00 0.00 4.85
483 484 3.136123 CCGGCCCATGAACAGCAG 61.136 66.667 0.00 0.00 0.00 4.24
498 499 4.183686 CAGCTTGCGAATGGGCCG 62.184 66.667 0.00 0.00 0.00 6.13
499 500 4.503314 GCAGCTTGCGAATGGGCC 62.503 66.667 0.00 0.00 31.71 5.80
519 520 4.980903 GTTGGCGCAACTGGCACG 62.981 66.667 10.83 0.00 44.88 5.34
520 521 4.645921 GGTTGGCGCAACTGGCAC 62.646 66.667 10.83 0.00 44.88 5.01
532 533 3.887868 GCCTTATGCGCCGGTTGG 61.888 66.667 4.18 1.69 38.77 3.77
541 542 2.247437 CCTCTTCGGCGCCTTATGC 61.247 63.158 26.68 0.00 0.00 3.14
542 543 0.598680 CTCCTCTTCGGCGCCTTATG 60.599 60.000 26.68 14.41 0.00 1.90
543 544 1.742768 CTCCTCTTCGGCGCCTTAT 59.257 57.895 26.68 0.00 0.00 1.73
544 545 2.423898 CCTCCTCTTCGGCGCCTTA 61.424 63.158 26.68 9.93 0.00 2.69
545 546 3.775654 CCTCCTCTTCGGCGCCTT 61.776 66.667 26.68 0.00 0.00 4.35
547 548 4.516195 GACCTCCTCTTCGGCGCC 62.516 72.222 19.07 19.07 0.00 6.53
548 549 3.418744 GAGACCTCCTCTTCGGCGC 62.419 68.421 0.00 0.00 38.86 6.53
549 550 2.802106 GAGACCTCCTCTTCGGCG 59.198 66.667 0.00 0.00 38.86 6.46
550 551 2.802106 CGAGACCTCCTCTTCGGC 59.198 66.667 0.00 0.00 39.78 5.54
551 552 2.776913 GGCGAGACCTCCTCTTCGG 61.777 68.421 0.00 0.00 39.78 4.30
552 553 2.776913 GGGCGAGACCTCCTCTTCG 61.777 68.421 0.00 0.00 39.78 3.79
553 554 2.776913 CGGGCGAGACCTCCTCTTC 61.777 68.421 0.00 0.00 39.78 2.87
554 555 2.207501 TACGGGCGAGACCTCCTCTT 62.208 60.000 0.00 0.00 39.78 2.85
555 556 2.612095 CTACGGGCGAGACCTCCTCT 62.612 65.000 0.00 0.00 39.78 3.69
556 557 2.124403 TACGGGCGAGACCTCCTC 60.124 66.667 0.00 0.00 39.10 3.71
557 558 2.124236 CTACGGGCGAGACCTCCT 60.124 66.667 0.00 0.00 39.10 3.69
558 559 3.902086 GCTACGGGCGAGACCTCC 61.902 72.222 0.00 0.00 39.10 4.30
567 568 0.672401 TGTTTGCTACAGCTACGGGC 60.672 55.000 2.44 0.00 42.66 6.13
568 569 1.076332 GTGTTTGCTACAGCTACGGG 58.924 55.000 2.44 0.00 42.66 5.28
569 570 1.726791 CAGTGTTTGCTACAGCTACGG 59.273 52.381 2.44 0.00 42.66 4.02
570 571 1.726791 CCAGTGTTTGCTACAGCTACG 59.273 52.381 2.44 0.00 42.66 3.51
571 572 1.464997 GCCAGTGTTTGCTACAGCTAC 59.535 52.381 2.44 1.97 42.66 3.58
572 573 1.347707 AGCCAGTGTTTGCTACAGCTA 59.652 47.619 2.44 0.00 42.66 3.32
573 574 0.109342 AGCCAGTGTTTGCTACAGCT 59.891 50.000 2.44 0.00 42.66 4.24
574 575 0.239347 CAGCCAGTGTTTGCTACAGC 59.761 55.000 0.00 0.00 37.45 4.40
575 576 1.532868 GACAGCCAGTGTTTGCTACAG 59.467 52.381 0.00 0.00 40.56 2.74
576 577 1.140852 AGACAGCCAGTGTTTGCTACA 59.859 47.619 0.00 0.00 40.56 2.74
577 578 1.532868 CAGACAGCCAGTGTTTGCTAC 59.467 52.381 0.00 0.00 40.56 3.58
578 579 1.416030 TCAGACAGCCAGTGTTTGCTA 59.584 47.619 0.00 0.00 40.39 3.49
579 580 0.181114 TCAGACAGCCAGTGTTTGCT 59.819 50.000 0.00 0.00 40.39 3.91
580 581 1.242076 ATCAGACAGCCAGTGTTTGC 58.758 50.000 0.00 0.00 40.39 3.68
581 582 2.030540 CCAATCAGACAGCCAGTGTTTG 60.031 50.000 0.00 0.00 40.56 2.93
582 583 2.233271 CCAATCAGACAGCCAGTGTTT 58.767 47.619 0.00 0.00 40.56 2.83
583 584 1.546323 CCCAATCAGACAGCCAGTGTT 60.546 52.381 0.00 0.00 40.56 3.32
623 624 0.977395 CCGATTTCCCTAGGGCCTAG 59.023 60.000 30.11 30.11 34.16 3.02
624 625 0.266753 ACCGATTTCCCTAGGGCCTA 59.733 55.000 24.42 13.73 34.68 3.93
625 626 1.004361 ACCGATTTCCCTAGGGCCT 59.996 57.895 24.42 12.58 34.68 5.19
626 627 1.148498 CACCGATTTCCCTAGGGCC 59.852 63.158 24.42 10.71 34.68 5.80
627 628 1.148498 CCACCGATTTCCCTAGGGC 59.852 63.158 24.42 8.08 34.68 5.19
628 629 1.148498 GCCACCGATTTCCCTAGGG 59.852 63.158 23.22 23.22 0.00 3.53
629 630 1.227556 CGCCACCGATTTCCCTAGG 60.228 63.158 0.06 0.06 36.29 3.02
630 631 1.887707 GCGCCACCGATTTCCCTAG 60.888 63.158 0.00 0.00 36.29 3.02
670 674 8.464404 CGTACGATCTATATAGGATGGGAAAAA 58.536 37.037 10.44 0.00 0.00 1.94
675 679 4.083961 CGCGTACGATCTATATAGGATGGG 60.084 50.000 21.65 2.03 43.93 4.00
763 964 4.735822 CCTCGCGTATAAGAAGAAGTCTTG 59.264 45.833 5.77 0.00 46.48 3.02
778 986 4.377635 GCATCAAAAACTTTACCTCGCGTA 60.378 41.667 5.77 0.00 0.00 4.42
806 1014 2.040544 CGGCGGCAGGAAGAATGTT 61.041 57.895 10.53 0.00 0.00 2.71
896 1106 7.830739 AGAAGGGCAACAAAAATCAATACTAG 58.169 34.615 0.00 0.00 39.74 2.57
897 1107 7.361713 CGAGAAGGGCAACAAAAATCAATACTA 60.362 37.037 0.00 0.00 39.74 1.82
898 1108 6.570378 CGAGAAGGGCAACAAAAATCAATACT 60.570 38.462 0.00 0.00 39.74 2.12
899 1109 5.572896 CGAGAAGGGCAACAAAAATCAATAC 59.427 40.000 0.00 0.00 39.74 1.89
940 2831 4.900664 ACGTGCAACTTTTGTTAGTGTAC 58.099 39.130 0.00 0.00 41.35 2.90
943 2834 4.034048 AGAGACGTGCAACTTTTGTTAGTG 59.966 41.667 0.00 0.00 41.35 2.74
945 2836 4.795970 AGAGACGTGCAACTTTTGTTAG 57.204 40.909 0.00 0.00 41.35 2.34
1124 4071 2.990967 ACCGCCAATTGGTGCAGG 60.991 61.111 29.15 24.40 44.11 4.85
1151 4186 3.991051 CACGGCCACACGGAGACT 61.991 66.667 2.24 0.00 38.39 3.24
1171 4206 3.443681 GGGTGAAAACGTGGATCAATGAT 59.556 43.478 0.00 0.00 0.00 2.45
1711 4766 0.894835 TGCGAGTGTGCCTCAATCTA 59.105 50.000 0.00 0.00 40.48 1.98
1801 4856 2.683867 CGACCACTAAGATCTCCGAGTT 59.316 50.000 0.00 0.00 0.00 3.01
1864 4919 9.606631 AAACCTATTTAAAACAACATCTGCAAA 57.393 25.926 0.00 0.00 0.00 3.68
1882 4937 6.189133 TGCTTTTAACCCGGATAAACCTATT 58.811 36.000 0.73 0.00 36.31 1.73
1895 4950 2.706890 TGTCTCCGATGCTTTTAACCC 58.293 47.619 0.00 0.00 0.00 4.11
1899 4954 4.584874 TGGATTTGTCTCCGATGCTTTTA 58.415 39.130 0.00 0.00 38.21 1.52
1918 4973 2.367202 GCCCTCCCACGAAGATGGA 61.367 63.158 0.00 0.00 43.02 3.41
2030 5088 4.097418 AGACCAACTGCTAGTATTGAGGT 58.903 43.478 0.00 0.00 0.00 3.85
2119 5190 3.431912 TGATCACGTGAGCAACATGTAAC 59.568 43.478 32.36 0.48 45.61 2.50
2548 5626 1.821216 ACCGCAACCTCAAATCGAAT 58.179 45.000 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.