Multiple sequence alignment - TraesCS6A01G324000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G324000 chr6A 100.000 2534 0 0 1 2534 557793859 557791326 0.000000e+00 4680
1 TraesCS6A01G324000 chr6A 91.898 901 73 0 936 1836 557365666 557364766 0.000000e+00 1260
2 TraesCS6A01G324000 chr6A 84.625 839 125 3 917 1753 557398597 557397761 0.000000e+00 832
3 TraesCS6A01G324000 chr6A 89.730 185 15 3 1834 2016 557142491 557142309 1.520000e-57 233
4 TraesCS6A01G324000 chr6D 94.277 2027 99 11 1 2016 412627668 412629688 0.000000e+00 3085
5 TraesCS6A01G324000 chr6D 87.282 1549 139 18 290 1835 412179190 412177697 0.000000e+00 1716
6 TraesCS6A01G324000 chr6D 84.881 840 121 5 917 1753 412006679 412005843 0.000000e+00 843
7 TraesCS6A01G324000 chr6D 88.485 330 25 9 2215 2534 328576898 328576572 1.100000e-103 387
8 TraesCS6A01G324000 chr6B 93.859 1775 100 6 3 1772 620282850 620281080 0.000000e+00 2665
9 TraesCS6A01G324000 chr6B 92.050 239 18 1 1778 2016 620273471 620273234 4.040000e-88 335
10 TraesCS6A01G324000 chr6B 94.203 207 11 1 2013 2218 478330566 478330772 5.260000e-82 315
11 TraesCS6A01G324000 chr6B 83.957 187 24 5 1833 2016 677621123 677621306 9.320000e-40 174
12 TraesCS6A01G324000 chrUn 85.495 717 99 4 911 1623 295470517 295471232 0.000000e+00 743
13 TraesCS6A01G324000 chrUn 93.269 208 13 1 2012 2218 314207116 314206909 3.170000e-79 305
14 TraesCS6A01G324000 chrUn 84.524 168 23 1 1671 1835 295471236 295471403 2.020000e-36 163
15 TraesCS6A01G324000 chr4A 85.154 714 103 3 911 1623 743868059 743868770 0.000000e+00 728
16 TraesCS6A01G324000 chr4A 89.032 310 24 9 2215 2522 531687616 531687315 2.380000e-100 375
17 TraesCS6A01G324000 chr4A 87.382 317 29 8 2215 2529 462227526 462227833 1.120000e-93 353
18 TraesCS6A01G324000 chr4A 93.720 207 12 1 2013 2218 591698467 591698673 2.450000e-80 309
19 TraesCS6A01G324000 chr7D 84.485 709 106 3 911 1619 1414456 1413752 0.000000e+00 697
20 TraesCS6A01G324000 chr7D 93.750 208 12 1 2012 2218 161930706 161930913 6.810000e-81 311
21 TraesCS6A01G324000 chr7D 93.720 207 12 1 2013 2218 326052763 326052557 2.450000e-80 309
22 TraesCS6A01G324000 chr5B 89.490 314 26 4 2217 2529 179047622 179047315 8.500000e-105 390
23 TraesCS6A01G324000 chr5B 83.957 187 25 4 1833 2016 602197300 602197116 9.320000e-40 174
24 TraesCS6A01G324000 chr5B 83.511 188 28 3 1831 2016 647581644 647581830 3.350000e-39 172
25 TraesCS6A01G324000 chr3A 89.062 320 21 8 2212 2529 219439499 219439806 3.950000e-103 385
26 TraesCS6A01G324000 chr3A 88.889 315 24 8 2215 2527 196165395 196165700 6.620000e-101 377
27 TraesCS6A01G324000 chr3A 87.461 319 29 7 2215 2529 198993238 198993549 8.620000e-95 357
28 TraesCS6A01G324000 chr3A 93.720 207 12 1 2013 2218 589907863 589907657 2.450000e-80 309
29 TraesCS6A01G324000 chr5A 88.199 322 29 7 2215 2534 680765569 680765883 2.380000e-100 375
30 TraesCS6A01G324000 chr3B 87.423 326 27 10 2213 2529 566257902 566258222 1.850000e-96 363
31 TraesCS6A01G324000 chr2D 93.151 219 11 4 2001 2218 284560184 284559969 4.070000e-83 318
32 TraesCS6A01G324000 chr5D 93.720 207 12 1 2013 2218 421982585 421982379 2.450000e-80 309
33 TraesCS6A01G324000 chr1D 93.237 207 13 1 2013 2218 422682902 422682696 1.140000e-78 303
34 TraesCS6A01G324000 chr4D 83.957 187 27 3 1832 2016 72164662 72164847 2.590000e-40 176
35 TraesCS6A01G324000 chr4D 83.770 191 26 5 1829 2016 93454589 93454777 2.590000e-40 176
36 TraesCS6A01G324000 chr4B 85.143 175 23 2 1865 2037 363652899 363653072 2.590000e-40 176


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G324000 chr6A 557791326 557793859 2533 True 4680 4680 100.0000 1 2534 1 chr6A.!!$R4 2533
1 TraesCS6A01G324000 chr6A 557364766 557365666 900 True 1260 1260 91.8980 936 1836 1 chr6A.!!$R2 900
2 TraesCS6A01G324000 chr6A 557397761 557398597 836 True 832 832 84.6250 917 1753 1 chr6A.!!$R3 836
3 TraesCS6A01G324000 chr6D 412627668 412629688 2020 False 3085 3085 94.2770 1 2016 1 chr6D.!!$F1 2015
4 TraesCS6A01G324000 chr6D 412177697 412179190 1493 True 1716 1716 87.2820 290 1835 1 chr6D.!!$R3 1545
5 TraesCS6A01G324000 chr6D 412005843 412006679 836 True 843 843 84.8810 917 1753 1 chr6D.!!$R2 836
6 TraesCS6A01G324000 chr6B 620281080 620282850 1770 True 2665 2665 93.8590 3 1772 1 chr6B.!!$R2 1769
7 TraesCS6A01G324000 chrUn 295470517 295471403 886 False 453 743 85.0095 911 1835 2 chrUn.!!$F1 924
8 TraesCS6A01G324000 chr4A 743868059 743868770 711 False 728 728 85.1540 911 1623 1 chr4A.!!$F3 712
9 TraesCS6A01G324000 chr7D 1413752 1414456 704 True 697 697 84.4850 911 1619 1 chr7D.!!$R1 708

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
940 961 0.531974 TGTCTTCGGTGTGGCACTTC 60.532 55.0 19.83 11.58 34.4 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2498 2529 0.038892 ACGACTACATCAACCGCGTT 60.039 50.0 4.92 0.0 0.0 4.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
181 185 6.884832 TGATCTCTTGATGTATTTTACCGGT 58.115 36.000 13.98 13.98 32.19 5.28
205 209 2.694628 TGCCCCATTCATTTGCTATGTC 59.305 45.455 0.00 0.00 0.00 3.06
288 292 6.082338 CAGAATGAGTCAAACCTTTTCGATG 58.918 40.000 0.00 0.00 39.69 3.84
312 316 6.126449 TGTTAGCTAGGAGAGAAGAGATGGTA 60.126 42.308 0.00 0.00 0.00 3.25
327 331 4.048600 AGATGGTACCCTAGTCAGAGAGA 58.951 47.826 10.07 0.00 0.00 3.10
367 371 2.747446 CGATAAAAAGGTGGGGTGTGAG 59.253 50.000 0.00 0.00 0.00 3.51
439 443 7.114953 GCTGTTTTGCCTGTTTTACTATTTCTC 59.885 37.037 0.00 0.00 0.00 2.87
527 537 3.066064 GGATGTGTTGTTGTAGTTGCACA 59.934 43.478 0.00 0.00 40.42 4.57
812 833 8.282592 TCACGTTATGTCTTCTCTTTTCATTTG 58.717 33.333 0.00 0.00 0.00 2.32
845 866 5.880887 TCTGTAACTCGAGATGTCACATAGT 59.119 40.000 21.68 0.00 0.00 2.12
940 961 0.531974 TGTCTTCGGTGTGGCACTTC 60.532 55.000 19.83 11.58 34.40 3.01
961 982 8.035394 CACTTCACACCACAACTACTATTCTAT 58.965 37.037 0.00 0.00 0.00 1.98
987 1008 1.599542 GCGATGGCTGAACTAATGACC 59.400 52.381 0.00 0.00 35.83 4.02
1070 1091 3.511934 ACAGTACAAGAGGCCTCACTAAG 59.488 47.826 33.90 18.33 0.00 2.18
1180 1201 4.081420 ACTGCAAGATTCAAGGATACGACT 60.081 41.667 0.00 0.00 39.08 4.18
1260 1281 5.813513 ATTGGAATGAGCCAGAAAAGTTT 57.186 34.783 0.00 0.00 39.52 2.66
1290 1311 3.624861 AGAGATTTGAATGCGATGGTGTC 59.375 43.478 0.00 0.00 0.00 3.67
1366 1387 3.517500 GGTTTGCCCTGGGATTGATTTTA 59.482 43.478 19.27 0.00 0.00 1.52
1484 1505 1.748493 GGTGTTTGGAGCAACTGTTCA 59.252 47.619 0.00 0.00 0.00 3.18
1689 1717 3.594603 ACAAGAAGATCCCTACACACG 57.405 47.619 0.00 0.00 0.00 4.49
1776 1807 4.081087 TGCTCCTGTCTACAATTCCCTTAC 60.081 45.833 0.00 0.00 0.00 2.34
1836 1867 5.266709 TGGTTCTAGTGTACTCCCTAAGT 57.733 43.478 0.00 0.00 42.33 2.24
1842 1873 2.043252 AGTGTACTCCCTAAGTCTGGCT 59.957 50.000 0.00 0.00 39.55 4.75
1846 1877 5.832060 GTGTACTCCCTAAGTCTGGCTATAA 59.168 44.000 0.00 0.00 39.55 0.98
1856 1887 8.812972 CCTAAGTCTGGCTATAATTGTGGTATA 58.187 37.037 0.00 0.00 0.00 1.47
1872 1903 6.627243 TGTGGTATATTAGTCGGTATCATGC 58.373 40.000 0.00 0.00 0.00 4.06
1881 1912 1.686587 TCGGTATCATGCACTCGGAAT 59.313 47.619 0.00 0.00 0.00 3.01
1891 1922 3.081061 TGCACTCGGAATTAGCAAACAT 58.919 40.909 0.00 0.00 31.42 2.71
1893 1924 3.429085 CACTCGGAATTAGCAAACATGC 58.571 45.455 0.00 0.00 0.00 4.06
1904 1935 1.990799 CAAACATGCTGATGTGGCAG 58.009 50.000 0.00 0.00 42.30 4.85
1915 1946 4.860907 GCTGATGTGGCAGACAATTAAAAG 59.139 41.667 0.00 0.00 38.36 2.27
1916 1947 5.335897 GCTGATGTGGCAGACAATTAAAAGA 60.336 40.000 0.00 0.00 38.36 2.52
1917 1948 6.647334 TGATGTGGCAGACAATTAAAAGAA 57.353 33.333 0.00 0.00 38.36 2.52
1967 1998 9.304731 GTAGATACCGTGTCATAACAAATGTAA 57.695 33.333 0.00 0.00 37.08 2.41
2006 2037 6.381481 TGCATGACATGAAATAAGATCACC 57.619 37.500 19.76 0.00 0.00 4.02
2018 2049 8.816894 TGAAATAAGATCACCTATGATACTCCC 58.183 37.037 0.00 0.00 46.01 4.30
2019 2050 8.980832 AAATAAGATCACCTATGATACTCCCT 57.019 34.615 0.00 0.00 46.01 4.20
2020 2051 8.602472 AATAAGATCACCTATGATACTCCCTC 57.398 38.462 0.00 0.00 46.01 4.30
2021 2052 5.876691 AGATCACCTATGATACTCCCTCT 57.123 43.478 0.00 0.00 46.01 3.69
2022 2053 5.826643 AGATCACCTATGATACTCCCTCTC 58.173 45.833 0.00 0.00 46.01 3.20
2023 2054 5.555542 AGATCACCTATGATACTCCCTCTCT 59.444 44.000 0.00 0.00 46.01 3.10
2024 2055 5.249780 TCACCTATGATACTCCCTCTCTC 57.750 47.826 0.00 0.00 0.00 3.20
2025 2056 4.917040 TCACCTATGATACTCCCTCTCTCT 59.083 45.833 0.00 0.00 0.00 3.10
2026 2057 5.013704 TCACCTATGATACTCCCTCTCTCTC 59.986 48.000 0.00 0.00 0.00 3.20
2027 2058 4.917040 ACCTATGATACTCCCTCTCTCTCA 59.083 45.833 0.00 0.00 0.00 3.27
2028 2059 5.014123 ACCTATGATACTCCCTCTCTCTCAG 59.986 48.000 0.00 0.00 0.00 3.35
2029 2060 5.014123 CCTATGATACTCCCTCTCTCTCAGT 59.986 48.000 0.00 0.00 0.00 3.41
2030 2061 4.871871 TGATACTCCCTCTCTCTCAGTT 57.128 45.455 0.00 0.00 0.00 3.16
2031 2062 5.199982 TGATACTCCCTCTCTCTCAGTTT 57.800 43.478 0.00 0.00 0.00 2.66
2032 2063 6.328782 TGATACTCCCTCTCTCTCAGTTTA 57.671 41.667 0.00 0.00 0.00 2.01
2033 2064 6.916909 TGATACTCCCTCTCTCTCAGTTTAT 58.083 40.000 0.00 0.00 0.00 1.40
2034 2065 8.046867 TGATACTCCCTCTCTCTCAGTTTATA 57.953 38.462 0.00 0.00 0.00 0.98
2035 2066 8.160765 TGATACTCCCTCTCTCTCAGTTTATAG 58.839 40.741 0.00 0.00 0.00 1.31
2036 2067 5.701224 ACTCCCTCTCTCTCAGTTTATAGG 58.299 45.833 0.00 0.00 0.00 2.57
2037 2068 5.068215 TCCCTCTCTCTCAGTTTATAGGG 57.932 47.826 0.00 0.00 43.23 3.53
2038 2069 3.576550 CCCTCTCTCTCAGTTTATAGGGC 59.423 52.174 0.00 0.00 36.30 5.19
2039 2070 4.219115 CCTCTCTCTCAGTTTATAGGGCA 58.781 47.826 0.00 0.00 0.00 5.36
2040 2071 4.837860 CCTCTCTCTCAGTTTATAGGGCAT 59.162 45.833 0.00 0.00 0.00 4.40
2041 2072 5.279406 CCTCTCTCTCAGTTTATAGGGCATG 60.279 48.000 0.00 0.00 0.00 4.06
2042 2073 4.039730 TCTCTCTCAGTTTATAGGGCATGC 59.960 45.833 9.90 9.90 0.00 4.06
2043 2074 3.062763 CTCTCAGTTTATAGGGCATGCG 58.937 50.000 12.44 0.00 0.00 4.73
2044 2075 1.532868 CTCAGTTTATAGGGCATGCGC 59.467 52.381 26.04 26.04 37.44 6.09
2045 2076 1.140852 TCAGTTTATAGGGCATGCGCT 59.859 47.619 35.54 35.54 42.05 5.92
2046 2077 1.949525 CAGTTTATAGGGCATGCGCTT 59.050 47.619 37.82 26.65 39.89 4.68
2047 2078 3.138304 CAGTTTATAGGGCATGCGCTTA 58.862 45.455 37.82 25.75 39.89 3.09
2048 2079 3.058914 CAGTTTATAGGGCATGCGCTTAC 60.059 47.826 37.82 27.73 39.89 2.34
2049 2080 2.178912 TTATAGGGCATGCGCTTACC 57.821 50.000 37.82 20.88 39.89 2.85
2050 2081 0.323629 TATAGGGCATGCGCTTACCC 59.676 55.000 37.82 21.38 43.17 3.69
2051 2082 2.411765 ATAGGGCATGCGCTTACCCC 62.412 60.000 37.82 21.06 43.96 4.95
2052 2083 4.506255 GGGCATGCGCTTACCCCT 62.506 66.667 26.07 0.00 36.24 4.79
2053 2084 2.508928 GGCATGCGCTTACCCCTA 59.491 61.111 12.44 0.00 38.60 3.53
2054 2085 1.598130 GGCATGCGCTTACCCCTAG 60.598 63.158 12.44 0.00 38.60 3.02
2055 2086 1.598130 GCATGCGCTTACCCCTAGG 60.598 63.158 9.73 0.06 35.25 3.02
2056 2087 2.325393 GCATGCGCTTACCCCTAGGT 62.325 60.000 9.73 0.00 42.26 3.08
2057 2088 0.249911 CATGCGCTTACCCCTAGGTC 60.250 60.000 9.73 0.00 46.45 3.85
2058 2089 0.689745 ATGCGCTTACCCCTAGGTCA 60.690 55.000 9.73 0.00 46.45 4.02
2059 2090 0.689745 TGCGCTTACCCCTAGGTCAT 60.690 55.000 9.73 0.00 46.45 3.06
2060 2091 0.033642 GCGCTTACCCCTAGGTCATC 59.966 60.000 8.29 0.00 46.45 2.92
2061 2092 1.410004 CGCTTACCCCTAGGTCATCA 58.590 55.000 8.29 0.00 46.45 3.07
2062 2093 1.760613 CGCTTACCCCTAGGTCATCAA 59.239 52.381 8.29 0.00 46.45 2.57
2063 2094 2.368875 CGCTTACCCCTAGGTCATCAAT 59.631 50.000 8.29 0.00 46.45 2.57
2064 2095 3.181454 CGCTTACCCCTAGGTCATCAATT 60.181 47.826 8.29 0.00 46.45 2.32
2065 2096 4.686122 CGCTTACCCCTAGGTCATCAATTT 60.686 45.833 8.29 0.00 46.45 1.82
2066 2097 4.580580 GCTTACCCCTAGGTCATCAATTTG 59.419 45.833 8.29 0.00 46.45 2.32
2067 2098 5.631481 GCTTACCCCTAGGTCATCAATTTGA 60.631 44.000 8.29 0.75 46.45 2.69
2068 2099 4.236527 ACCCCTAGGTCATCAATTTGAC 57.763 45.455 8.29 2.20 46.45 3.18
2078 2109 6.325919 GTCATCAATTTGACCAACCTAACA 57.674 37.500 0.15 0.00 40.11 2.41
2079 2110 6.149633 GTCATCAATTTGACCAACCTAACAC 58.850 40.000 0.15 0.00 40.11 3.32
2080 2111 5.830457 TCATCAATTTGACCAACCTAACACA 59.170 36.000 0.15 0.00 0.00 3.72
2081 2112 6.322456 TCATCAATTTGACCAACCTAACACAA 59.678 34.615 0.15 0.00 0.00 3.33
2082 2113 6.531503 TCAATTTGACCAACCTAACACAAA 57.468 33.333 0.00 0.00 0.00 2.83
2083 2114 7.118496 TCAATTTGACCAACCTAACACAAAT 57.882 32.000 0.00 0.00 38.83 2.32
2084 2115 7.206687 TCAATTTGACCAACCTAACACAAATC 58.793 34.615 0.00 0.00 37.10 2.17
2085 2116 6.723298 ATTTGACCAACCTAACACAAATCA 57.277 33.333 0.00 0.00 34.38 2.57
2086 2117 6.723298 TTTGACCAACCTAACACAAATCAT 57.277 33.333 0.00 0.00 0.00 2.45
2087 2118 7.825331 TTTGACCAACCTAACACAAATCATA 57.175 32.000 0.00 0.00 0.00 2.15
2088 2119 8.415950 TTTGACCAACCTAACACAAATCATAT 57.584 30.769 0.00 0.00 0.00 1.78
2089 2120 9.521841 TTTGACCAACCTAACACAAATCATATA 57.478 29.630 0.00 0.00 0.00 0.86
2090 2121 9.693739 TTGACCAACCTAACACAAATCATATAT 57.306 29.630 0.00 0.00 0.00 0.86
2091 2122 9.337396 TGACCAACCTAACACAAATCATATATC 57.663 33.333 0.00 0.00 0.00 1.63
2092 2123 9.337396 GACCAACCTAACACAAATCATATATCA 57.663 33.333 0.00 0.00 0.00 2.15
2093 2124 9.693739 ACCAACCTAACACAAATCATATATCAA 57.306 29.630 0.00 0.00 0.00 2.57
2137 2168 9.450807 AAACTTCAGATGTTCTATTTTCAAACG 57.549 29.630 2.28 0.00 0.00 3.60
2138 2169 7.584987 ACTTCAGATGTTCTATTTTCAAACGG 58.415 34.615 0.00 0.00 0.00 4.44
2139 2170 7.228706 ACTTCAGATGTTCTATTTTCAAACGGT 59.771 33.333 0.00 0.00 0.00 4.83
2140 2171 8.610248 TTCAGATGTTCTATTTTCAAACGGTA 57.390 30.769 0.00 0.00 0.00 4.02
2141 2172 8.786826 TCAGATGTTCTATTTTCAAACGGTAT 57.213 30.769 0.00 0.00 0.00 2.73
2142 2173 9.878667 TCAGATGTTCTATTTTCAAACGGTATA 57.121 29.630 0.00 0.00 0.00 1.47
2184 2215 8.860088 AGTTCATATTAGGGTGATAAAATTGGC 58.140 33.333 0.00 0.00 0.00 4.52
2185 2216 8.637986 GTTCATATTAGGGTGATAAAATTGGCA 58.362 33.333 0.00 0.00 0.00 4.92
2186 2217 8.774546 TCATATTAGGGTGATAAAATTGGCAA 57.225 30.769 0.68 0.68 0.00 4.52
2187 2218 8.637986 TCATATTAGGGTGATAAAATTGGCAAC 58.362 33.333 0.00 0.00 0.00 4.17
2188 2219 5.669164 TTAGGGTGATAAAATTGGCAACC 57.331 39.130 0.00 0.00 38.39 3.77
2189 2220 3.790126 AGGGTGATAAAATTGGCAACCT 58.210 40.909 0.00 0.00 43.35 3.50
2190 2221 4.941713 AGGGTGATAAAATTGGCAACCTA 58.058 39.130 0.00 0.00 46.13 3.08
2191 2222 4.956075 AGGGTGATAAAATTGGCAACCTAG 59.044 41.667 0.00 0.00 46.13 3.02
2192 2223 4.099419 GGGTGATAAAATTGGCAACCTAGG 59.901 45.833 7.41 7.41 35.26 3.02
2193 2224 4.709886 GGTGATAAAATTGGCAACCTAGGT 59.290 41.667 9.21 9.21 0.00 3.08
2194 2225 5.889289 GGTGATAAAATTGGCAACCTAGGTA 59.111 40.000 16.67 0.00 0.00 3.08
2195 2226 6.549736 GGTGATAAAATTGGCAACCTAGGTAT 59.450 38.462 16.67 0.83 0.00 2.73
2196 2227 7.722285 GGTGATAAAATTGGCAACCTAGGTATA 59.278 37.037 16.67 0.00 0.00 1.47
2197 2228 8.565416 GTGATAAAATTGGCAACCTAGGTATAC 58.435 37.037 16.67 8.74 0.00 1.47
2198 2229 7.442969 TGATAAAATTGGCAACCTAGGTATACG 59.557 37.037 16.67 5.52 0.00 3.06
2199 2230 2.607631 TTGGCAACCTAGGTATACGC 57.392 50.000 16.67 15.11 0.00 4.42
2200 2231 0.386476 TGGCAACCTAGGTATACGCG 59.614 55.000 16.67 3.53 0.00 6.01
2201 2232 0.942884 GGCAACCTAGGTATACGCGC 60.943 60.000 16.67 10.85 0.00 6.86
2202 2233 0.249155 GCAACCTAGGTATACGCGCA 60.249 55.000 16.67 0.00 0.00 6.09
2203 2234 1.767289 CAACCTAGGTATACGCGCAG 58.233 55.000 16.67 2.42 0.00 5.18
2204 2235 0.672342 AACCTAGGTATACGCGCAGG 59.328 55.000 16.67 6.39 0.00 4.85
2205 2236 0.179009 ACCTAGGTATACGCGCAGGA 60.179 55.000 14.41 0.00 0.00 3.86
2206 2237 0.240411 CCTAGGTATACGCGCAGGAC 59.760 60.000 5.73 0.00 0.00 3.85
2207 2238 1.236628 CTAGGTATACGCGCAGGACT 58.763 55.000 5.73 1.68 0.00 3.85
2208 2239 1.607628 CTAGGTATACGCGCAGGACTT 59.392 52.381 5.73 0.00 0.00 3.01
2209 2240 0.102481 AGGTATACGCGCAGGACTTG 59.898 55.000 5.73 0.00 0.00 3.16
2210 2241 0.179119 GGTATACGCGCAGGACTTGT 60.179 55.000 5.73 0.00 0.00 3.16
2211 2242 1.066002 GGTATACGCGCAGGACTTGTA 59.934 52.381 5.73 0.00 0.00 2.41
2212 2243 2.480073 GGTATACGCGCAGGACTTGTAA 60.480 50.000 5.73 0.00 0.00 2.41
2213 2244 2.373540 ATACGCGCAGGACTTGTAAA 57.626 45.000 5.73 0.00 0.00 2.01
2214 2245 2.373540 TACGCGCAGGACTTGTAAAT 57.626 45.000 5.73 0.00 0.00 1.40
2215 2246 0.796312 ACGCGCAGGACTTGTAAATG 59.204 50.000 5.73 0.00 0.00 2.32
2216 2247 1.075542 CGCGCAGGACTTGTAAATGA 58.924 50.000 8.75 0.00 0.00 2.57
2217 2248 1.463056 CGCGCAGGACTTGTAAATGAA 59.537 47.619 8.75 0.00 0.00 2.57
2218 2249 2.474526 CGCGCAGGACTTGTAAATGAAG 60.475 50.000 8.75 0.00 0.00 3.02
2219 2250 2.159517 GCGCAGGACTTGTAAATGAAGG 60.160 50.000 0.30 0.00 0.00 3.46
2220 2251 3.334691 CGCAGGACTTGTAAATGAAGGA 58.665 45.455 0.00 0.00 0.00 3.36
2221 2252 3.751175 CGCAGGACTTGTAAATGAAGGAA 59.249 43.478 0.00 0.00 0.00 3.36
2222 2253 4.215399 CGCAGGACTTGTAAATGAAGGAAA 59.785 41.667 0.00 0.00 0.00 3.13
2223 2254 5.106157 CGCAGGACTTGTAAATGAAGGAAAT 60.106 40.000 0.00 0.00 0.00 2.17
2224 2255 6.093495 CGCAGGACTTGTAAATGAAGGAAATA 59.907 38.462 0.00 0.00 0.00 1.40
2225 2256 7.201732 CGCAGGACTTGTAAATGAAGGAAATAT 60.202 37.037 0.00 0.00 0.00 1.28
2226 2257 7.917505 GCAGGACTTGTAAATGAAGGAAATATG 59.082 37.037 0.00 0.00 0.00 1.78
2227 2258 7.917505 CAGGACTTGTAAATGAAGGAAATATGC 59.082 37.037 0.00 0.00 0.00 3.14
2228 2259 7.068716 AGGACTTGTAAATGAAGGAAATATGCC 59.931 37.037 0.00 0.00 0.00 4.40
2229 2260 7.112452 ACTTGTAAATGAAGGAAATATGCCC 57.888 36.000 0.00 0.00 0.00 5.36
2230 2261 6.897413 ACTTGTAAATGAAGGAAATATGCCCT 59.103 34.615 0.00 0.00 0.00 5.19
2231 2262 8.058847 ACTTGTAAATGAAGGAAATATGCCCTA 58.941 33.333 0.00 0.00 31.36 3.53
2232 2263 8.463930 TTGTAAATGAAGGAAATATGCCCTAG 57.536 34.615 0.00 0.00 31.36 3.02
2233 2264 7.811282 TGTAAATGAAGGAAATATGCCCTAGA 58.189 34.615 0.00 0.00 31.36 2.43
2234 2265 7.939039 TGTAAATGAAGGAAATATGCCCTAGAG 59.061 37.037 0.00 0.00 31.36 2.43
2235 2266 4.982241 TGAAGGAAATATGCCCTAGAGG 57.018 45.455 0.00 0.00 39.47 3.69
2253 2284 9.574516 CCCTAGAGGCAATAATAAGTTGTTATT 57.425 33.333 10.79 10.79 41.05 1.40
2312 2343 8.902540 ATTCATGCTAGAATTGTATTAACCGA 57.097 30.769 0.00 0.00 34.70 4.69
2313 2344 8.725405 TTCATGCTAGAATTGTATTAACCGAA 57.275 30.769 0.00 0.00 0.00 4.30
2314 2345 8.725405 TCATGCTAGAATTGTATTAACCGAAA 57.275 30.769 0.00 0.00 0.00 3.46
2315 2346 9.168451 TCATGCTAGAATTGTATTAACCGAAAA 57.832 29.630 0.00 0.00 0.00 2.29
2316 2347 9.221775 CATGCTAGAATTGTATTAACCGAAAAC 57.778 33.333 0.00 0.00 0.00 2.43
2317 2348 8.556213 TGCTAGAATTGTATTAACCGAAAACT 57.444 30.769 0.00 0.00 0.00 2.66
2318 2349 9.005777 TGCTAGAATTGTATTAACCGAAAACTT 57.994 29.630 0.00 0.00 0.00 2.66
2319 2350 9.274065 GCTAGAATTGTATTAACCGAAAACTTG 57.726 33.333 0.00 0.00 0.00 3.16
2327 2358 9.221933 TGTATTAACCGAAAACTTGATACATGT 57.778 29.630 2.69 2.69 28.92 3.21
2328 2359 9.485591 GTATTAACCGAAAACTTGATACATGTG 57.514 33.333 9.11 0.00 0.00 3.21
2329 2360 7.499321 TTAACCGAAAACTTGATACATGTGT 57.501 32.000 9.11 0.10 0.00 3.72
2330 2361 5.356882 ACCGAAAACTTGATACATGTGTG 57.643 39.130 9.11 0.00 0.00 3.82
2331 2362 4.215399 ACCGAAAACTTGATACATGTGTGG 59.785 41.667 9.11 0.00 0.00 4.17
2332 2363 4.454161 CCGAAAACTTGATACATGTGTGGA 59.546 41.667 9.11 0.00 0.00 4.02
2333 2364 5.123820 CCGAAAACTTGATACATGTGTGGAT 59.876 40.000 9.11 0.00 0.00 3.41
2334 2365 6.315144 CCGAAAACTTGATACATGTGTGGATA 59.685 38.462 9.11 0.00 0.00 2.59
2335 2366 7.180079 CGAAAACTTGATACATGTGTGGATAC 58.820 38.462 9.11 0.00 0.00 2.24
2336 2367 6.662414 AAACTTGATACATGTGTGGATACG 57.338 37.500 9.11 0.00 42.51 3.06
2337 2368 5.339008 ACTTGATACATGTGTGGATACGT 57.661 39.130 9.11 0.00 42.51 3.57
2338 2369 6.459670 ACTTGATACATGTGTGGATACGTA 57.540 37.500 9.11 0.00 42.51 3.57
2339 2370 6.504398 ACTTGATACATGTGTGGATACGTAG 58.496 40.000 9.11 0.00 42.51 3.51
2340 2371 6.320418 ACTTGATACATGTGTGGATACGTAGA 59.680 38.462 9.11 0.00 42.51 2.59
2341 2372 6.068473 TGATACATGTGTGGATACGTAGAC 57.932 41.667 9.11 0.00 42.51 2.59
2342 2373 5.591067 TGATACATGTGTGGATACGTAGACA 59.409 40.000 9.11 1.09 42.51 3.41
2343 2374 4.794278 ACATGTGTGGATACGTAGACAA 57.206 40.909 0.00 0.00 42.51 3.18
2344 2375 5.142061 ACATGTGTGGATACGTAGACAAA 57.858 39.130 0.00 0.00 42.51 2.83
2345 2376 5.543714 ACATGTGTGGATACGTAGACAAAA 58.456 37.500 0.00 0.00 42.51 2.44
2346 2377 5.407387 ACATGTGTGGATACGTAGACAAAAC 59.593 40.000 0.00 5.63 42.51 2.43
2347 2378 4.946445 TGTGTGGATACGTAGACAAAACA 58.054 39.130 0.08 7.91 42.51 2.83
2348 2379 5.543714 TGTGTGGATACGTAGACAAAACAT 58.456 37.500 0.08 0.00 42.51 2.71
2349 2380 5.992829 TGTGTGGATACGTAGACAAAACATT 59.007 36.000 0.08 0.00 42.51 2.71
2350 2381 6.073494 TGTGTGGATACGTAGACAAAACATTG 60.073 38.462 0.08 0.00 42.51 2.82
2351 2382 5.992829 TGTGGATACGTAGACAAAACATTGT 59.007 36.000 0.08 0.00 42.51 2.71
2352 2383 6.073494 TGTGGATACGTAGACAAAACATTGTG 60.073 38.462 0.08 0.00 42.51 3.33
2353 2384 5.992829 TGGATACGTAGACAAAACATTGTGT 59.007 36.000 0.08 0.00 42.51 3.72
2354 2385 6.146510 TGGATACGTAGACAAAACATTGTGTC 59.853 38.462 6.80 6.80 41.78 3.67
2355 2386 4.806342 ACGTAGACAAAACATTGTGTCC 57.194 40.909 10.69 0.00 44.30 4.02
2356 2387 3.562557 ACGTAGACAAAACATTGTGTCCC 59.437 43.478 10.69 2.66 44.30 4.46
2357 2388 3.813166 CGTAGACAAAACATTGTGTCCCT 59.187 43.478 10.69 0.00 44.30 4.20
2358 2389 4.992319 CGTAGACAAAACATTGTGTCCCTA 59.008 41.667 10.69 0.00 44.30 3.53
2359 2390 5.120208 CGTAGACAAAACATTGTGTCCCTAG 59.880 44.000 10.69 0.00 44.30 3.02
2360 2391 5.048846 AGACAAAACATTGTGTCCCTAGT 57.951 39.130 10.69 0.00 44.30 2.57
2361 2392 6.182507 AGACAAAACATTGTGTCCCTAGTA 57.817 37.500 10.69 0.00 44.30 1.82
2362 2393 6.597562 AGACAAAACATTGTGTCCCTAGTAA 58.402 36.000 10.69 0.00 44.30 2.24
2363 2394 6.710744 AGACAAAACATTGTGTCCCTAGTAAG 59.289 38.462 10.69 0.00 44.30 2.34
2364 2395 5.240844 ACAAAACATTGTGTCCCTAGTAAGC 59.759 40.000 0.00 0.00 33.23 3.09
2365 2396 3.629142 ACATTGTGTCCCTAGTAAGCC 57.371 47.619 0.00 0.00 0.00 4.35
2366 2397 3.182152 ACATTGTGTCCCTAGTAAGCCT 58.818 45.455 0.00 0.00 0.00 4.58
2367 2398 3.197983 ACATTGTGTCCCTAGTAAGCCTC 59.802 47.826 0.00 0.00 0.00 4.70
2368 2399 2.921834 TGTGTCCCTAGTAAGCCTCT 57.078 50.000 0.00 0.00 0.00 3.69
2369 2400 4.326600 TTGTGTCCCTAGTAAGCCTCTA 57.673 45.455 0.00 0.00 0.00 2.43
2370 2401 3.629087 TGTGTCCCTAGTAAGCCTCTAC 58.371 50.000 0.00 0.00 0.00 2.59
2371 2402 3.268856 TGTGTCCCTAGTAAGCCTCTACT 59.731 47.826 0.00 0.00 36.16 2.57
2372 2403 4.264262 TGTGTCCCTAGTAAGCCTCTACTT 60.264 45.833 0.00 0.00 34.03 2.24
2373 2404 4.098196 GTGTCCCTAGTAAGCCTCTACTTG 59.902 50.000 0.00 0.00 34.03 3.16
2374 2405 4.264262 TGTCCCTAGTAAGCCTCTACTTGT 60.264 45.833 0.00 0.00 34.03 3.16
2375 2406 4.710865 GTCCCTAGTAAGCCTCTACTTGTT 59.289 45.833 0.00 0.00 34.03 2.83
2376 2407 4.710375 TCCCTAGTAAGCCTCTACTTGTTG 59.290 45.833 0.00 0.00 34.03 3.33
2377 2408 4.141914 CCCTAGTAAGCCTCTACTTGTTGG 60.142 50.000 0.00 0.00 34.03 3.77
2378 2409 3.983044 AGTAAGCCTCTACTTGTTGGG 57.017 47.619 0.00 0.00 0.00 4.12
2379 2410 2.572104 AGTAAGCCTCTACTTGTTGGGG 59.428 50.000 0.00 0.00 0.00 4.96
2380 2411 1.742308 AAGCCTCTACTTGTTGGGGA 58.258 50.000 5.34 0.00 0.00 4.81
2381 2412 1.742308 AGCCTCTACTTGTTGGGGAA 58.258 50.000 5.34 0.00 0.00 3.97
2382 2413 1.351350 AGCCTCTACTTGTTGGGGAAC 59.649 52.381 5.34 0.00 0.00 3.62
2383 2414 1.351350 GCCTCTACTTGTTGGGGAACT 59.649 52.381 5.34 0.00 0.00 3.01
2384 2415 2.570302 GCCTCTACTTGTTGGGGAACTA 59.430 50.000 5.34 0.00 0.00 2.24
2385 2416 3.008704 GCCTCTACTTGTTGGGGAACTAA 59.991 47.826 5.34 0.00 0.00 2.24
2386 2417 4.833390 CCTCTACTTGTTGGGGAACTAAG 58.167 47.826 0.00 0.00 0.00 2.18
2387 2418 4.286291 CCTCTACTTGTTGGGGAACTAAGT 59.714 45.833 0.00 0.00 35.86 2.24
2388 2419 5.482878 CCTCTACTTGTTGGGGAACTAAGTA 59.517 44.000 0.00 0.00 33.93 2.24
2389 2420 6.013984 CCTCTACTTGTTGGGGAACTAAGTAA 60.014 42.308 0.00 0.00 34.54 2.24
2390 2421 7.311109 CCTCTACTTGTTGGGGAACTAAGTAAT 60.311 40.741 0.00 0.00 34.54 1.89
2391 2422 7.981142 TCTACTTGTTGGGGAACTAAGTAATT 58.019 34.615 0.00 0.00 34.54 1.40
2392 2423 8.442374 TCTACTTGTTGGGGAACTAAGTAATTT 58.558 33.333 0.00 0.00 34.54 1.82
2393 2424 7.520451 ACTTGTTGGGGAACTAAGTAATTTC 57.480 36.000 0.00 0.00 30.45 2.17
2394 2425 7.064229 ACTTGTTGGGGAACTAAGTAATTTCA 58.936 34.615 0.00 0.00 30.45 2.69
2395 2426 7.562088 ACTTGTTGGGGAACTAAGTAATTTCAA 59.438 33.333 0.00 0.00 30.45 2.69
2396 2427 7.899648 TGTTGGGGAACTAAGTAATTTCAAA 57.100 32.000 0.00 0.00 0.00 2.69
2397 2428 8.307582 TGTTGGGGAACTAAGTAATTTCAAAA 57.692 30.769 0.00 0.00 0.00 2.44
2398 2429 8.759782 TGTTGGGGAACTAAGTAATTTCAAAAA 58.240 29.630 0.00 0.00 0.00 1.94
2416 2447 2.939460 AAATTTCCCTACGCACATGC 57.061 45.000 0.00 0.00 37.78 4.06
2417 2448 1.832883 AATTTCCCTACGCACATGCA 58.167 45.000 4.49 0.00 42.21 3.96
2418 2449 1.832883 ATTTCCCTACGCACATGCAA 58.167 45.000 4.49 0.00 42.21 4.08
2419 2450 1.164411 TTTCCCTACGCACATGCAAG 58.836 50.000 4.49 0.69 42.21 4.01
2420 2451 0.323302 TTCCCTACGCACATGCAAGA 59.677 50.000 4.49 0.00 42.21 3.02
2421 2452 0.541392 TCCCTACGCACATGCAAGAT 59.459 50.000 4.49 0.00 42.21 2.40
2422 2453 0.940126 CCCTACGCACATGCAAGATC 59.060 55.000 4.49 0.00 42.21 2.75
2423 2454 0.578683 CCTACGCACATGCAAGATCG 59.421 55.000 4.49 0.95 42.21 3.69
2424 2455 1.280982 CTACGCACATGCAAGATCGT 58.719 50.000 14.73 14.73 42.21 3.73
2425 2456 0.998669 TACGCACATGCAAGATCGTG 59.001 50.000 17.94 4.06 42.21 4.35
2426 2457 1.061411 CGCACATGCAAGATCGTGG 59.939 57.895 10.74 0.00 42.21 4.94
2427 2458 1.638388 CGCACATGCAAGATCGTGGT 61.638 55.000 10.74 0.00 42.21 4.16
2428 2459 0.179181 GCACATGCAAGATCGTGGTG 60.179 55.000 10.74 10.64 41.59 4.17
2429 2460 1.441738 CACATGCAAGATCGTGGTGA 58.558 50.000 10.74 0.00 0.00 4.02
2430 2461 2.011947 CACATGCAAGATCGTGGTGAT 58.988 47.619 10.74 0.00 41.06 3.06
2431 2462 2.011947 ACATGCAAGATCGTGGTGATG 58.988 47.619 10.74 1.61 37.47 3.07
2432 2463 1.019673 ATGCAAGATCGTGGTGATGC 58.980 50.000 10.74 3.86 37.47 3.91
2433 2464 0.321475 TGCAAGATCGTGGTGATGCA 60.321 50.000 10.74 6.19 37.68 3.96
2434 2465 1.019673 GCAAGATCGTGGTGATGCAT 58.980 50.000 10.74 0.00 37.47 3.96
2435 2466 2.212652 GCAAGATCGTGGTGATGCATA 58.787 47.619 10.74 0.00 37.47 3.14
2436 2467 2.222678 GCAAGATCGTGGTGATGCATAG 59.777 50.000 10.74 0.00 37.47 2.23
2437 2468 3.461061 CAAGATCGTGGTGATGCATAGT 58.539 45.455 0.00 0.00 37.47 2.12
2438 2469 4.620982 CAAGATCGTGGTGATGCATAGTA 58.379 43.478 0.00 0.00 37.47 1.82
2439 2470 4.937201 AGATCGTGGTGATGCATAGTAA 57.063 40.909 0.00 0.00 37.47 2.24
2440 2471 4.621991 AGATCGTGGTGATGCATAGTAAC 58.378 43.478 0.00 0.00 37.47 2.50
2441 2472 2.804647 TCGTGGTGATGCATAGTAACG 58.195 47.619 14.78 14.78 0.00 3.18
2442 2473 2.424246 TCGTGGTGATGCATAGTAACGA 59.576 45.455 17.93 17.93 36.55 3.85
2443 2474 2.789339 CGTGGTGATGCATAGTAACGAG 59.211 50.000 15.50 0.00 31.76 4.18
2444 2475 3.488553 CGTGGTGATGCATAGTAACGAGA 60.489 47.826 15.50 0.00 31.76 4.04
2445 2476 4.045104 GTGGTGATGCATAGTAACGAGAG 58.955 47.826 0.00 0.00 0.00 3.20
2446 2477 3.068165 TGGTGATGCATAGTAACGAGAGG 59.932 47.826 0.00 0.00 0.00 3.69
2447 2478 3.553096 GGTGATGCATAGTAACGAGAGGG 60.553 52.174 0.00 0.00 0.00 4.30
2448 2479 2.628178 TGATGCATAGTAACGAGAGGGG 59.372 50.000 0.00 0.00 0.00 4.79
2449 2480 2.447408 TGCATAGTAACGAGAGGGGA 57.553 50.000 0.00 0.00 0.00 4.81
2450 2481 2.307768 TGCATAGTAACGAGAGGGGAG 58.692 52.381 0.00 0.00 0.00 4.30
2451 2482 2.092049 TGCATAGTAACGAGAGGGGAGA 60.092 50.000 0.00 0.00 0.00 3.71
2452 2483 2.554893 GCATAGTAACGAGAGGGGAGAG 59.445 54.545 0.00 0.00 0.00 3.20
2453 2484 3.822940 CATAGTAACGAGAGGGGAGAGT 58.177 50.000 0.00 0.00 0.00 3.24
2454 2485 2.131776 AGTAACGAGAGGGGAGAGTG 57.868 55.000 0.00 0.00 0.00 3.51
2455 2486 1.355043 AGTAACGAGAGGGGAGAGTGT 59.645 52.381 0.00 0.00 0.00 3.55
2456 2487 2.169330 GTAACGAGAGGGGAGAGTGTT 58.831 52.381 0.00 0.00 0.00 3.32
2457 2488 0.969894 AACGAGAGGGGAGAGTGTTG 59.030 55.000 0.00 0.00 0.00 3.33
2458 2489 0.178958 ACGAGAGGGGAGAGTGTTGT 60.179 55.000 0.00 0.00 0.00 3.32
2459 2490 0.528470 CGAGAGGGGAGAGTGTTGTC 59.472 60.000 0.00 0.00 0.00 3.18
2460 2491 1.888826 CGAGAGGGGAGAGTGTTGTCT 60.889 57.143 0.00 0.00 0.00 3.41
2461 2492 2.618302 CGAGAGGGGAGAGTGTTGTCTA 60.618 54.545 0.00 0.00 0.00 2.59
2462 2493 2.756207 GAGAGGGGAGAGTGTTGTCTAC 59.244 54.545 0.00 0.00 0.00 2.59
2463 2494 1.473278 GAGGGGAGAGTGTTGTCTACG 59.527 57.143 0.00 0.00 0.00 3.51
2464 2495 1.203025 AGGGGAGAGTGTTGTCTACGT 60.203 52.381 0.00 0.00 0.00 3.57
2465 2496 2.040813 AGGGGAGAGTGTTGTCTACGTA 59.959 50.000 0.00 0.00 0.00 3.57
2466 2497 2.163211 GGGGAGAGTGTTGTCTACGTAC 59.837 54.545 0.00 0.00 0.00 3.67
2467 2498 2.163211 GGGAGAGTGTTGTCTACGTACC 59.837 54.545 0.00 0.00 0.00 3.34
2468 2499 2.163211 GGAGAGTGTTGTCTACGTACCC 59.837 54.545 0.00 0.00 0.00 3.69
2469 2500 3.080319 GAGAGTGTTGTCTACGTACCCT 58.920 50.000 0.00 0.00 0.00 4.34
2470 2501 3.080319 AGAGTGTTGTCTACGTACCCTC 58.920 50.000 0.00 0.00 0.00 4.30
2471 2502 1.808945 AGTGTTGTCTACGTACCCTCG 59.191 52.381 0.00 0.00 0.00 4.63
2472 2503 1.537202 GTGTTGTCTACGTACCCTCGT 59.463 52.381 0.00 0.00 45.97 4.18
2473 2504 2.742053 GTGTTGTCTACGTACCCTCGTA 59.258 50.000 0.00 0.00 43.80 3.43
2478 2509 3.362581 TACGTACCCTCGTAGACCG 57.637 57.895 0.00 0.00 43.80 4.79
2479 2510 0.179084 TACGTACCCTCGTAGACCGG 60.179 60.000 0.00 0.00 43.80 5.28
2480 2511 1.153369 CGTACCCTCGTAGACCGGA 60.153 63.158 9.46 0.00 37.11 5.14
2481 2512 0.744414 CGTACCCTCGTAGACCGGAA 60.744 60.000 9.46 0.00 37.11 4.30
2482 2513 1.020437 GTACCCTCGTAGACCGGAAG 58.980 60.000 9.46 0.00 37.11 3.46
2483 2514 0.749454 TACCCTCGTAGACCGGAAGC 60.749 60.000 9.46 0.00 37.11 3.86
2484 2515 2.408022 CCTCGTAGACCGGAAGCG 59.592 66.667 9.46 7.33 37.11 4.68
2485 2516 2.408022 CTCGTAGACCGGAAGCGG 59.592 66.667 9.46 0.00 37.11 5.52
2486 2517 2.046023 TCGTAGACCGGAAGCGGA 60.046 61.111 9.46 0.00 37.11 5.54
2487 2518 1.651240 CTCGTAGACCGGAAGCGGAA 61.651 60.000 9.46 0.00 37.11 4.30
2488 2519 1.226603 CGTAGACCGGAAGCGGAAG 60.227 63.158 9.46 0.00 0.00 3.46
2508 2539 1.823260 CGTTAGCACAACGCGGTTGA 61.823 55.000 22.26 3.38 45.28 3.18
2509 2540 0.515564 GTTAGCACAACGCGGTTGAT 59.484 50.000 22.26 13.46 45.28 2.57
2510 2541 0.515127 TTAGCACAACGCGGTTGATG 59.485 50.000 22.26 17.39 45.28 3.07
2511 2542 0.601576 TAGCACAACGCGGTTGATGT 60.602 50.000 22.26 11.72 45.28 3.06
2512 2543 0.601576 AGCACAACGCGGTTGATGTA 60.602 50.000 22.26 0.00 45.28 2.29
2513 2544 0.179225 GCACAACGCGGTTGATGTAG 60.179 55.000 22.26 1.41 45.28 2.74
2514 2545 1.144969 CACAACGCGGTTGATGTAGT 58.855 50.000 22.26 2.04 45.28 2.73
2515 2546 1.126113 CACAACGCGGTTGATGTAGTC 59.874 52.381 22.26 0.00 45.28 2.59
2516 2547 0.365523 CAACGCGGTTGATGTAGTCG 59.634 55.000 12.47 0.00 45.28 4.18
2517 2548 0.038892 AACGCGGTTGATGTAGTCGT 60.039 50.000 12.47 0.00 0.00 4.34
2518 2549 0.804364 ACGCGGTTGATGTAGTCGTA 59.196 50.000 12.47 0.00 0.00 3.43
2519 2550 1.186030 CGCGGTTGATGTAGTCGTAC 58.814 55.000 0.00 0.00 0.00 3.67
2520 2551 1.186030 GCGGTTGATGTAGTCGTACG 58.814 55.000 9.53 9.53 30.95 3.67
2521 2552 1.466360 GCGGTTGATGTAGTCGTACGT 60.466 52.381 16.05 0.00 30.95 3.57
2522 2553 2.434761 CGGTTGATGTAGTCGTACGTC 58.565 52.381 16.05 10.06 43.16 4.34
2523 2554 2.094894 CGGTTGATGTAGTCGTACGTCT 59.905 50.000 18.54 18.54 43.23 4.18
2524 2555 3.425359 CGGTTGATGTAGTCGTACGTCTT 60.425 47.826 19.61 2.66 43.23 3.01
2525 2556 4.094212 GGTTGATGTAGTCGTACGTCTTC 58.906 47.826 19.61 15.02 43.23 2.87
2526 2557 4.378770 GGTTGATGTAGTCGTACGTCTTCA 60.379 45.833 19.61 19.79 43.23 3.02
2527 2558 4.332186 TGATGTAGTCGTACGTCTTCAC 57.668 45.455 19.61 13.19 43.23 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
177 181 0.106719 AATGAATGGGGCACTACCGG 60.107 55.000 0.00 0.00 40.62 5.28
181 185 2.530460 AGCAAATGAATGGGGCACTA 57.470 45.000 0.00 0.00 0.00 2.74
205 209 3.568007 CGGAAGGGTCTTCTCTAGATCTG 59.432 52.174 5.18 0.00 34.21 2.90
288 292 5.137551 ACCATCTCTTCTCTCCTAGCTAAC 58.862 45.833 0.00 0.00 0.00 2.34
312 316 0.260523 GGCCTCTCTCTGACTAGGGT 59.739 60.000 0.00 0.00 0.00 4.34
446 450 5.856455 CGTTGGCCATAGAGTAAAACAAAAG 59.144 40.000 6.09 0.00 0.00 2.27
527 537 0.970937 ACACATCCCTCATCGGTCGT 60.971 55.000 0.00 0.00 0.00 4.34
684 704 4.386867 AATCATCTCTTTACGCGGAGAA 57.613 40.909 12.47 0.00 41.16 2.87
753 774 8.880878 GGGAACCGCATAATTTTACATATTTT 57.119 30.769 0.00 0.00 40.86 1.82
812 833 2.089980 TCGAGTTACAGAGGGCTACAC 58.910 52.381 0.00 0.00 0.00 2.90
845 866 5.713792 GAAGGATTCGATCTAGATGGACA 57.286 43.478 16.17 8.92 34.17 4.02
932 953 0.034574 AGTTGTGGTGTGAAGTGCCA 60.035 50.000 0.00 0.00 0.00 4.92
940 961 9.261180 CCATTATAGAATAGTAGTTGTGGTGTG 57.739 37.037 0.00 0.00 0.00 3.82
961 982 0.546122 AGTTCAGCCATCGCCCATTA 59.454 50.000 0.00 0.00 34.57 1.90
987 1008 0.524862 GCTGCATGACTCTTGGGTTG 59.475 55.000 0.00 0.00 0.00 3.77
1070 1091 3.705043 CCTTGAGGTATTGCATGCTTC 57.295 47.619 20.33 6.36 0.00 3.86
1180 1201 2.669781 CATAGTAGTCCCCCGTGGTAA 58.330 52.381 0.00 0.00 34.77 2.85
1260 1281 3.811497 CGCATTCAAATCTCTCTGGCATA 59.189 43.478 0.00 0.00 0.00 3.14
1290 1311 1.291877 CCAAACCTCTGAAGTCGGCG 61.292 60.000 0.00 0.00 0.00 6.46
1431 1452 1.068121 CTTCCCTTGGGTCCACTCTT 58.932 55.000 5.51 0.00 0.00 2.85
1484 1505 2.849318 AGGAATAGCTCAGCCTTCCTTT 59.151 45.455 20.67 5.26 43.80 3.11
1759 1790 6.670464 TGTCATAGGTAAGGGAATTGTAGACA 59.330 38.462 0.00 0.00 0.00 3.41
1846 1877 7.764443 GCATGATACCGACTAATATACCACAAT 59.236 37.037 0.00 0.00 0.00 2.71
1856 1887 3.305403 CCGAGTGCATGATACCGACTAAT 60.305 47.826 0.00 0.00 0.00 1.73
1872 1903 3.429085 GCATGTTTGCTAATTCCGAGTG 58.571 45.455 0.00 0.00 45.77 3.51
1891 1922 1.913778 AATTGTCTGCCACATCAGCA 58.086 45.000 0.00 0.00 38.82 4.41
1893 1924 6.258230 TCTTTTAATTGTCTGCCACATCAG 57.742 37.500 0.00 0.00 33.90 2.90
1915 1946 9.921637 CCTATGTTATTCTAACCATCTCTCTTC 57.078 37.037 0.00 0.00 0.00 2.87
1916 1947 9.440761 ACCTATGTTATTCTAACCATCTCTCTT 57.559 33.333 0.00 0.00 0.00 2.85
1959 1990 7.588854 GCATGACACATAGTAGCATTACATTTG 59.411 37.037 0.00 0.00 31.96 2.32
1967 1998 4.964593 TCATGCATGACACATAGTAGCAT 58.035 39.130 25.42 0.00 41.24 3.79
1992 2023 8.816894 GGGAGTATCATAGGTGATCTTATTTCA 58.183 37.037 0.00 0.00 43.87 2.69
1993 2024 9.041354 AGGGAGTATCATAGGTGATCTTATTTC 57.959 37.037 0.00 0.00 43.87 2.17
2004 2035 4.917040 TGAGAGAGAGGGAGTATCATAGGT 59.083 45.833 0.00 0.00 36.25 3.08
2006 2037 6.126863 ACTGAGAGAGAGGGAGTATCATAG 57.873 45.833 0.00 0.00 36.25 2.23
2016 2047 3.576550 GCCCTATAAACTGAGAGAGAGGG 59.423 52.174 7.90 7.90 44.52 4.30
2017 2048 4.219115 TGCCCTATAAACTGAGAGAGAGG 58.781 47.826 0.00 0.00 0.00 3.69
2018 2049 5.782047 CATGCCCTATAAACTGAGAGAGAG 58.218 45.833 0.00 0.00 0.00 3.20
2019 2050 4.039730 GCATGCCCTATAAACTGAGAGAGA 59.960 45.833 6.36 0.00 0.00 3.10
2020 2051 4.314121 GCATGCCCTATAAACTGAGAGAG 58.686 47.826 6.36 0.00 0.00 3.20
2021 2052 3.243873 CGCATGCCCTATAAACTGAGAGA 60.244 47.826 13.15 0.00 0.00 3.10
2022 2053 3.062763 CGCATGCCCTATAAACTGAGAG 58.937 50.000 13.15 0.00 0.00 3.20
2023 2054 2.806745 GCGCATGCCCTATAAACTGAGA 60.807 50.000 13.15 0.00 33.98 3.27
2024 2055 1.532868 GCGCATGCCCTATAAACTGAG 59.467 52.381 13.15 0.00 33.98 3.35
2025 2056 1.140852 AGCGCATGCCCTATAAACTGA 59.859 47.619 13.15 0.00 44.31 3.41
2026 2057 1.597742 AGCGCATGCCCTATAAACTG 58.402 50.000 13.15 0.00 44.31 3.16
2027 2058 2.348411 AAGCGCATGCCCTATAAACT 57.652 45.000 13.15 0.00 44.31 2.66
2028 2059 2.225727 GGTAAGCGCATGCCCTATAAAC 59.774 50.000 13.15 5.45 44.31 2.01
2029 2060 2.500229 GGTAAGCGCATGCCCTATAAA 58.500 47.619 13.15 0.00 44.31 1.40
2030 2061 1.271163 GGGTAAGCGCATGCCCTATAA 60.271 52.381 28.59 0.00 41.65 0.98
2031 2062 0.323629 GGGTAAGCGCATGCCCTATA 59.676 55.000 28.59 1.45 41.65 1.31
2032 2063 1.073199 GGGTAAGCGCATGCCCTAT 59.927 57.895 28.59 2.42 41.65 2.57
2033 2064 2.508928 GGGTAAGCGCATGCCCTA 59.491 61.111 28.59 0.00 41.65 3.53
2034 2065 4.506255 GGGGTAAGCGCATGCCCT 62.506 66.667 32.81 5.35 44.12 5.19
2035 2066 3.114825 TAGGGGTAAGCGCATGCCC 62.115 63.158 28.10 28.10 43.96 5.36
2036 2067 1.598130 CTAGGGGTAAGCGCATGCC 60.598 63.158 11.58 11.58 44.31 4.40
2037 2068 1.598130 CCTAGGGGTAAGCGCATGC 60.598 63.158 11.47 7.91 43.24 4.06
2038 2069 1.830145 ACCTAGGGGTAAGCGCATG 59.170 57.895 14.81 0.00 45.32 4.06
2039 2070 4.394102 ACCTAGGGGTAAGCGCAT 57.606 55.556 14.81 0.00 45.32 4.73
2056 2087 5.830457 TGTGTTAGGTTGGTCAAATTGATGA 59.170 36.000 0.00 0.00 0.00 2.92
2057 2088 6.083098 TGTGTTAGGTTGGTCAAATTGATG 57.917 37.500 0.00 0.00 0.00 3.07
2058 2089 6.723298 TTGTGTTAGGTTGGTCAAATTGAT 57.277 33.333 0.00 0.00 0.00 2.57
2059 2090 6.531503 TTTGTGTTAGGTTGGTCAAATTGA 57.468 33.333 0.00 0.00 0.00 2.57
2060 2091 6.983307 TGATTTGTGTTAGGTTGGTCAAATTG 59.017 34.615 0.00 0.00 36.22 2.32
2061 2092 7.118496 TGATTTGTGTTAGGTTGGTCAAATT 57.882 32.000 0.00 0.00 36.22 1.82
2062 2093 6.723298 TGATTTGTGTTAGGTTGGTCAAAT 57.277 33.333 0.00 0.00 37.92 2.32
2063 2094 6.723298 ATGATTTGTGTTAGGTTGGTCAAA 57.277 33.333 0.00 0.00 0.00 2.69
2064 2095 9.693739 ATATATGATTTGTGTTAGGTTGGTCAA 57.306 29.630 0.00 0.00 0.00 3.18
2065 2096 9.337396 GATATATGATTTGTGTTAGGTTGGTCA 57.663 33.333 0.00 0.00 0.00 4.02
2066 2097 9.337396 TGATATATGATTTGTGTTAGGTTGGTC 57.663 33.333 0.00 0.00 0.00 4.02
2067 2098 9.693739 TTGATATATGATTTGTGTTAGGTTGGT 57.306 29.630 0.00 0.00 0.00 3.67
2111 2142 9.450807 CGTTTGAAAATAGAACATCTGAAGTTT 57.549 29.630 0.00 0.00 0.00 2.66
2112 2143 8.076178 CCGTTTGAAAATAGAACATCTGAAGTT 58.924 33.333 0.00 0.00 0.00 2.66
2113 2144 7.228706 ACCGTTTGAAAATAGAACATCTGAAGT 59.771 33.333 0.00 0.00 0.00 3.01
2114 2145 7.584987 ACCGTTTGAAAATAGAACATCTGAAG 58.415 34.615 0.00 0.00 0.00 3.02
2115 2146 7.504924 ACCGTTTGAAAATAGAACATCTGAA 57.495 32.000 0.00 0.00 0.00 3.02
2116 2147 8.786826 ATACCGTTTGAAAATAGAACATCTGA 57.213 30.769 0.00 0.00 0.00 3.27
2158 2189 8.860088 GCCAATTTTATCACCCTAATATGAACT 58.140 33.333 0.00 0.00 0.00 3.01
2159 2190 8.637986 TGCCAATTTTATCACCCTAATATGAAC 58.362 33.333 0.00 0.00 0.00 3.18
2160 2191 8.774546 TGCCAATTTTATCACCCTAATATGAA 57.225 30.769 0.00 0.00 0.00 2.57
2161 2192 8.637986 GTTGCCAATTTTATCACCCTAATATGA 58.362 33.333 0.00 0.00 0.00 2.15
2162 2193 7.872483 GGTTGCCAATTTTATCACCCTAATATG 59.128 37.037 0.00 0.00 0.00 1.78
2163 2194 7.789349 AGGTTGCCAATTTTATCACCCTAATAT 59.211 33.333 0.00 0.00 0.00 1.28
2164 2195 7.129425 AGGTTGCCAATTTTATCACCCTAATA 58.871 34.615 0.00 0.00 0.00 0.98
2165 2196 5.963865 AGGTTGCCAATTTTATCACCCTAAT 59.036 36.000 0.00 0.00 0.00 1.73
2166 2197 5.337788 AGGTTGCCAATTTTATCACCCTAA 58.662 37.500 0.00 0.00 0.00 2.69
2167 2198 4.941713 AGGTTGCCAATTTTATCACCCTA 58.058 39.130 0.00 0.00 0.00 3.53
2168 2199 3.790126 AGGTTGCCAATTTTATCACCCT 58.210 40.909 0.00 0.00 0.00 4.34
2169 2200 4.099419 CCTAGGTTGCCAATTTTATCACCC 59.901 45.833 0.00 0.00 0.00 4.61
2170 2201 4.709886 ACCTAGGTTGCCAATTTTATCACC 59.290 41.667 9.21 0.00 0.00 4.02
2171 2202 5.914898 ACCTAGGTTGCCAATTTTATCAC 57.085 39.130 9.21 0.00 0.00 3.06
2172 2203 7.442969 CGTATACCTAGGTTGCCAATTTTATCA 59.557 37.037 22.11 0.00 0.00 2.15
2173 2204 7.572539 GCGTATACCTAGGTTGCCAATTTTATC 60.573 40.741 22.11 0.00 0.00 1.75
2174 2205 6.206048 GCGTATACCTAGGTTGCCAATTTTAT 59.794 38.462 22.11 5.71 0.00 1.40
2175 2206 5.528320 GCGTATACCTAGGTTGCCAATTTTA 59.472 40.000 22.11 0.00 0.00 1.52
2176 2207 4.337274 GCGTATACCTAGGTTGCCAATTTT 59.663 41.667 22.11 0.00 0.00 1.82
2177 2208 3.881089 GCGTATACCTAGGTTGCCAATTT 59.119 43.478 22.11 0.00 0.00 1.82
2178 2209 3.473625 GCGTATACCTAGGTTGCCAATT 58.526 45.455 22.11 0.00 0.00 2.32
2179 2210 2.547218 CGCGTATACCTAGGTTGCCAAT 60.547 50.000 22.11 9.64 0.00 3.16
2180 2211 1.202440 CGCGTATACCTAGGTTGCCAA 60.202 52.381 22.11 0.75 0.00 4.52
2181 2212 0.386476 CGCGTATACCTAGGTTGCCA 59.614 55.000 22.11 1.21 0.00 4.92
2182 2213 0.942884 GCGCGTATACCTAGGTTGCC 60.943 60.000 22.11 7.02 0.00 4.52
2183 2214 0.249155 TGCGCGTATACCTAGGTTGC 60.249 55.000 22.11 17.41 0.00 4.17
2184 2215 1.602165 CCTGCGCGTATACCTAGGTTG 60.602 57.143 22.11 9.15 0.00 3.77
2185 2216 0.672342 CCTGCGCGTATACCTAGGTT 59.328 55.000 22.11 10.62 0.00 3.50
2186 2217 0.179009 TCCTGCGCGTATACCTAGGT 60.179 55.000 20.57 20.57 0.00 3.08
2187 2218 0.240411 GTCCTGCGCGTATACCTAGG 59.760 60.000 7.41 7.41 0.00 3.02
2188 2219 1.236628 AGTCCTGCGCGTATACCTAG 58.763 55.000 8.43 0.00 0.00 3.02
2189 2220 1.335810 CAAGTCCTGCGCGTATACCTA 59.664 52.381 8.43 0.00 0.00 3.08
2190 2221 0.102481 CAAGTCCTGCGCGTATACCT 59.898 55.000 8.43 0.00 0.00 3.08
2191 2222 0.179119 ACAAGTCCTGCGCGTATACC 60.179 55.000 8.43 0.00 0.00 2.73
2192 2223 2.480224 TACAAGTCCTGCGCGTATAC 57.520 50.000 8.43 4.74 0.00 1.47
2193 2224 3.507103 TTTACAAGTCCTGCGCGTATA 57.493 42.857 8.43 0.00 0.00 1.47
2194 2225 2.373540 TTTACAAGTCCTGCGCGTAT 57.626 45.000 8.43 0.00 0.00 3.06
2195 2226 1.996898 CATTTACAAGTCCTGCGCGTA 59.003 47.619 8.43 0.71 0.00 4.42
2196 2227 0.796312 CATTTACAAGTCCTGCGCGT 59.204 50.000 8.43 0.00 0.00 6.01
2197 2228 1.075542 TCATTTACAAGTCCTGCGCG 58.924 50.000 0.00 0.00 0.00 6.86
2198 2229 2.159517 CCTTCATTTACAAGTCCTGCGC 60.160 50.000 0.00 0.00 0.00 6.09
2199 2230 3.334691 TCCTTCATTTACAAGTCCTGCG 58.665 45.455 0.00 0.00 0.00 5.18
2200 2231 5.705609 TTTCCTTCATTTACAAGTCCTGC 57.294 39.130 0.00 0.00 0.00 4.85
2201 2232 7.917505 GCATATTTCCTTCATTTACAAGTCCTG 59.082 37.037 0.00 0.00 0.00 3.86
2202 2233 7.068716 GGCATATTTCCTTCATTTACAAGTCCT 59.931 37.037 0.00 0.00 0.00 3.85
2203 2234 7.203218 GGCATATTTCCTTCATTTACAAGTCC 58.797 38.462 0.00 0.00 0.00 3.85
2204 2235 7.068716 AGGGCATATTTCCTTCATTTACAAGTC 59.931 37.037 0.00 0.00 0.00 3.01
2205 2236 6.897413 AGGGCATATTTCCTTCATTTACAAGT 59.103 34.615 0.00 0.00 0.00 3.16
2206 2237 7.352079 AGGGCATATTTCCTTCATTTACAAG 57.648 36.000 0.00 0.00 0.00 3.16
2207 2238 8.278639 TCTAGGGCATATTTCCTTCATTTACAA 58.721 33.333 0.00 0.00 34.75 2.41
2208 2239 7.811282 TCTAGGGCATATTTCCTTCATTTACA 58.189 34.615 0.00 0.00 34.75 2.41
2209 2240 7.391833 CCTCTAGGGCATATTTCCTTCATTTAC 59.608 40.741 0.00 0.00 34.75 2.01
2210 2241 7.461749 CCTCTAGGGCATATTTCCTTCATTTA 58.538 38.462 0.00 0.00 34.75 1.40
2211 2242 6.310149 CCTCTAGGGCATATTTCCTTCATTT 58.690 40.000 0.00 0.00 34.75 2.32
2212 2243 5.885465 CCTCTAGGGCATATTTCCTTCATT 58.115 41.667 0.00 0.00 34.75 2.57
2213 2244 5.511386 CCTCTAGGGCATATTTCCTTCAT 57.489 43.478 0.00 0.00 34.75 2.57
2214 2245 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
2227 2258 9.574516 AATAACAACTTATTATTGCCTCTAGGG 57.425 33.333 0.00 0.00 31.80 3.53
2286 2317 9.990360 TCGGTTAATACAATTCTAGCATGAATA 57.010 29.630 0.00 0.00 35.82 1.75
2287 2318 8.902540 TCGGTTAATACAATTCTAGCATGAAT 57.097 30.769 0.00 0.00 38.19 2.57
2288 2319 8.725405 TTCGGTTAATACAATTCTAGCATGAA 57.275 30.769 0.00 0.00 0.00 2.57
2289 2320 8.725405 TTTCGGTTAATACAATTCTAGCATGA 57.275 30.769 0.00 0.00 0.00 3.07
2290 2321 9.221775 GTTTTCGGTTAATACAATTCTAGCATG 57.778 33.333 0.00 0.00 0.00 4.06
2291 2322 9.174166 AGTTTTCGGTTAATACAATTCTAGCAT 57.826 29.630 0.00 0.00 0.00 3.79
2292 2323 8.556213 AGTTTTCGGTTAATACAATTCTAGCA 57.444 30.769 0.00 0.00 0.00 3.49
2293 2324 9.274065 CAAGTTTTCGGTTAATACAATTCTAGC 57.726 33.333 0.00 0.00 0.00 3.42
2301 2332 9.221933 ACATGTATCAAGTTTTCGGTTAATACA 57.778 29.630 0.00 0.00 34.10 2.29
2302 2333 9.485591 CACATGTATCAAGTTTTCGGTTAATAC 57.514 33.333 0.00 0.00 0.00 1.89
2303 2334 9.221933 ACACATGTATCAAGTTTTCGGTTAATA 57.778 29.630 0.00 0.00 0.00 0.98
2304 2335 8.020819 CACACATGTATCAAGTTTTCGGTTAAT 58.979 33.333 0.00 0.00 0.00 1.40
2305 2336 7.356540 CACACATGTATCAAGTTTTCGGTTAA 58.643 34.615 0.00 0.00 0.00 2.01
2306 2337 6.072948 CCACACATGTATCAAGTTTTCGGTTA 60.073 38.462 0.00 0.00 0.00 2.85
2307 2338 5.278266 CCACACATGTATCAAGTTTTCGGTT 60.278 40.000 0.00 0.00 0.00 4.44
2308 2339 4.215399 CCACACATGTATCAAGTTTTCGGT 59.785 41.667 0.00 0.00 0.00 4.69
2309 2340 4.454161 TCCACACATGTATCAAGTTTTCGG 59.546 41.667 0.00 0.00 0.00 4.30
2310 2341 5.605564 TCCACACATGTATCAAGTTTTCG 57.394 39.130 0.00 0.00 0.00 3.46
2311 2342 7.148474 ACGTATCCACACATGTATCAAGTTTTC 60.148 37.037 0.00 0.00 0.00 2.29
2312 2343 6.653320 ACGTATCCACACATGTATCAAGTTTT 59.347 34.615 0.00 0.00 0.00 2.43
2313 2344 6.170506 ACGTATCCACACATGTATCAAGTTT 58.829 36.000 0.00 0.00 0.00 2.66
2314 2345 5.730550 ACGTATCCACACATGTATCAAGTT 58.269 37.500 0.00 0.00 0.00 2.66
2315 2346 5.339008 ACGTATCCACACATGTATCAAGT 57.661 39.130 0.00 0.00 0.00 3.16
2316 2347 6.637254 GTCTACGTATCCACACATGTATCAAG 59.363 42.308 0.00 0.00 0.00 3.02
2317 2348 6.095720 TGTCTACGTATCCACACATGTATCAA 59.904 38.462 0.00 0.00 0.00 2.57
2318 2349 5.591067 TGTCTACGTATCCACACATGTATCA 59.409 40.000 0.00 0.00 0.00 2.15
2319 2350 6.068473 TGTCTACGTATCCACACATGTATC 57.932 41.667 0.00 0.00 0.00 2.24
2320 2351 6.459670 TTGTCTACGTATCCACACATGTAT 57.540 37.500 0.00 0.00 0.00 2.29
2321 2352 5.900865 TTGTCTACGTATCCACACATGTA 57.099 39.130 0.00 0.00 0.00 2.29
2322 2353 4.794278 TTGTCTACGTATCCACACATGT 57.206 40.909 0.00 0.00 0.00 3.21
2323 2354 5.407084 TGTTTTGTCTACGTATCCACACATG 59.593 40.000 0.00 0.00 0.00 3.21
2324 2355 5.543714 TGTTTTGTCTACGTATCCACACAT 58.456 37.500 0.00 0.00 0.00 3.21
2325 2356 4.946445 TGTTTTGTCTACGTATCCACACA 58.054 39.130 0.00 0.00 0.00 3.72
2326 2357 6.073440 ACAATGTTTTGTCTACGTATCCACAC 60.073 38.462 0.00 0.00 42.43 3.82
2327 2358 5.992829 ACAATGTTTTGTCTACGTATCCACA 59.007 36.000 0.00 0.00 42.43 4.17
2328 2359 6.073440 ACACAATGTTTTGTCTACGTATCCAC 60.073 38.462 0.00 0.00 44.24 4.02
2329 2360 5.992829 ACACAATGTTTTGTCTACGTATCCA 59.007 36.000 0.00 0.00 44.24 3.41
2330 2361 6.401796 GGACACAATGTTTTGTCTACGTATCC 60.402 42.308 10.73 0.00 44.24 2.59
2331 2362 6.401796 GGGACACAATGTTTTGTCTACGTATC 60.402 42.308 10.73 0.00 44.24 2.24
2332 2363 5.410439 GGGACACAATGTTTTGTCTACGTAT 59.590 40.000 10.73 0.00 44.24 3.06
2333 2364 4.751098 GGGACACAATGTTTTGTCTACGTA 59.249 41.667 10.73 0.00 44.24 3.57
2334 2365 3.562557 GGGACACAATGTTTTGTCTACGT 59.437 43.478 10.73 0.00 44.24 3.57
2335 2366 3.813166 AGGGACACAATGTTTTGTCTACG 59.187 43.478 10.73 0.00 44.24 3.51
2336 2367 5.995897 ACTAGGGACACAATGTTTTGTCTAC 59.004 40.000 10.73 5.88 44.24 2.59
2337 2368 6.182507 ACTAGGGACACAATGTTTTGTCTA 57.817 37.500 10.73 0.00 44.24 2.59
2338 2369 5.048846 ACTAGGGACACAATGTTTTGTCT 57.951 39.130 10.73 0.00 44.24 3.41
2339 2370 6.567891 GCTTACTAGGGACACAATGTTTTGTC 60.568 42.308 3.97 3.97 44.24 3.18
2341 2372 5.335661 GGCTTACTAGGGACACAATGTTTTG 60.336 44.000 0.00 0.00 38.86 2.44
2342 2373 4.765339 GGCTTACTAGGGACACAATGTTTT 59.235 41.667 0.00 0.00 0.00 2.43
2343 2374 4.042934 AGGCTTACTAGGGACACAATGTTT 59.957 41.667 0.00 0.00 0.00 2.83
2344 2375 3.587506 AGGCTTACTAGGGACACAATGTT 59.412 43.478 0.00 0.00 0.00 2.71
2345 2376 3.182152 AGGCTTACTAGGGACACAATGT 58.818 45.455 0.00 0.00 0.00 2.71
2346 2377 3.452627 AGAGGCTTACTAGGGACACAATG 59.547 47.826 0.00 0.00 0.00 2.82
2347 2378 3.725634 AGAGGCTTACTAGGGACACAAT 58.274 45.455 0.00 0.00 0.00 2.71
2348 2379 3.185880 AGAGGCTTACTAGGGACACAA 57.814 47.619 0.00 0.00 0.00 3.33
2349 2380 2.921834 AGAGGCTTACTAGGGACACA 57.078 50.000 0.00 0.00 0.00 3.72
2350 2381 3.900971 AGTAGAGGCTTACTAGGGACAC 58.099 50.000 7.35 0.00 32.25 3.67
2351 2382 4.264262 ACAAGTAGAGGCTTACTAGGGACA 60.264 45.833 8.95 0.00 33.62 4.02
2352 2383 4.279982 ACAAGTAGAGGCTTACTAGGGAC 58.720 47.826 8.95 0.00 33.62 4.46
2353 2384 4.604784 ACAAGTAGAGGCTTACTAGGGA 57.395 45.455 8.95 0.00 33.62 4.20
2354 2385 4.141914 CCAACAAGTAGAGGCTTACTAGGG 60.142 50.000 8.95 6.04 33.62 3.53
2355 2386 4.141914 CCCAACAAGTAGAGGCTTACTAGG 60.142 50.000 8.95 7.73 33.62 3.02
2356 2387 4.141914 CCCCAACAAGTAGAGGCTTACTAG 60.142 50.000 8.95 0.00 33.62 2.57
2357 2388 3.773119 CCCCAACAAGTAGAGGCTTACTA 59.227 47.826 8.95 0.00 33.62 1.82
2358 2389 2.572104 CCCCAACAAGTAGAGGCTTACT 59.428 50.000 0.00 0.00 35.44 2.24
2359 2390 2.570302 TCCCCAACAAGTAGAGGCTTAC 59.430 50.000 0.00 0.00 0.00 2.34
2360 2391 2.910544 TCCCCAACAAGTAGAGGCTTA 58.089 47.619 0.00 0.00 0.00 3.09
2361 2392 1.742308 TCCCCAACAAGTAGAGGCTT 58.258 50.000 0.00 0.00 0.00 4.35
2362 2393 1.351350 GTTCCCCAACAAGTAGAGGCT 59.649 52.381 0.00 0.00 32.14 4.58
2363 2394 1.351350 AGTTCCCCAACAAGTAGAGGC 59.649 52.381 0.00 0.00 34.60 4.70
2364 2395 4.286291 ACTTAGTTCCCCAACAAGTAGAGG 59.714 45.833 0.00 0.00 34.66 3.69
2365 2396 5.485209 ACTTAGTTCCCCAACAAGTAGAG 57.515 43.478 0.00 0.00 34.66 2.43
2366 2397 6.999705 TTACTTAGTTCCCCAACAAGTAGA 57.000 37.500 0.00 0.00 37.39 2.59
2367 2398 8.631480 AAATTACTTAGTTCCCCAACAAGTAG 57.369 34.615 0.00 0.00 37.39 2.57
2368 2399 8.219178 TGAAATTACTTAGTTCCCCAACAAGTA 58.781 33.333 0.00 0.00 36.32 2.24
2369 2400 7.064229 TGAAATTACTTAGTTCCCCAACAAGT 58.936 34.615 0.00 0.00 37.49 3.16
2370 2401 7.519032 TGAAATTACTTAGTTCCCCAACAAG 57.481 36.000 0.00 0.00 34.60 3.16
2371 2402 7.899648 TTGAAATTACTTAGTTCCCCAACAA 57.100 32.000 0.00 0.00 34.60 2.83
2372 2403 7.899648 TTTGAAATTACTTAGTTCCCCAACA 57.100 32.000 0.00 0.00 34.60 3.33
2395 2426 3.006323 TGCATGTGCGTAGGGAAATTTTT 59.994 39.130 0.01 0.00 45.83 1.94
2396 2427 2.560542 TGCATGTGCGTAGGGAAATTTT 59.439 40.909 0.01 0.00 45.83 1.82
2397 2428 2.166829 TGCATGTGCGTAGGGAAATTT 58.833 42.857 0.01 0.00 45.83 1.82
2398 2429 1.832883 TGCATGTGCGTAGGGAAATT 58.167 45.000 0.01 0.00 45.83 1.82
2399 2430 1.745087 CTTGCATGTGCGTAGGGAAAT 59.255 47.619 0.01 0.00 45.83 2.17
2400 2431 1.164411 CTTGCATGTGCGTAGGGAAA 58.836 50.000 0.01 0.00 45.83 3.13
2401 2432 0.323302 TCTTGCATGTGCGTAGGGAA 59.677 50.000 0.01 0.00 45.83 3.97
2402 2433 0.541392 ATCTTGCATGTGCGTAGGGA 59.459 50.000 0.01 0.00 45.83 4.20
2403 2434 0.940126 GATCTTGCATGTGCGTAGGG 59.060 55.000 0.01 0.00 45.83 3.53
2404 2435 0.578683 CGATCTTGCATGTGCGTAGG 59.421 55.000 0.01 0.00 45.83 3.18
2405 2436 1.005662 CACGATCTTGCATGTGCGTAG 60.006 52.381 16.90 1.03 45.83 3.51
2406 2437 0.998669 CACGATCTTGCATGTGCGTA 59.001 50.000 16.90 0.00 45.83 4.42
2407 2438 1.638388 CCACGATCTTGCATGTGCGT 61.638 55.000 13.49 13.49 45.83 5.24
2408 2439 1.061411 CCACGATCTTGCATGTGCG 59.939 57.895 12.52 12.52 45.83 5.34
2409 2440 0.179181 CACCACGATCTTGCATGTGC 60.179 55.000 0.00 0.00 42.50 4.57
2410 2441 1.441738 TCACCACGATCTTGCATGTG 58.558 50.000 0.00 0.00 0.00 3.21
2411 2442 2.011947 CATCACCACGATCTTGCATGT 58.988 47.619 0.00 0.00 29.21 3.21
2412 2443 1.268386 GCATCACCACGATCTTGCATG 60.268 52.381 0.00 0.00 29.21 4.06
2413 2444 1.019673 GCATCACCACGATCTTGCAT 58.980 50.000 0.00 0.00 29.21 3.96
2414 2445 0.321475 TGCATCACCACGATCTTGCA 60.321 50.000 0.00 0.00 30.39 4.08
2415 2446 1.019673 ATGCATCACCACGATCTTGC 58.980 50.000 0.00 0.00 29.21 4.01
2416 2447 3.461061 ACTATGCATCACCACGATCTTG 58.539 45.455 0.19 0.00 29.21 3.02
2417 2448 3.827008 ACTATGCATCACCACGATCTT 57.173 42.857 0.19 0.00 29.21 2.40
2418 2449 4.621991 GTTACTATGCATCACCACGATCT 58.378 43.478 0.19 0.00 29.21 2.75
2419 2450 3.425525 CGTTACTATGCATCACCACGATC 59.574 47.826 0.19 0.00 29.21 3.69
2420 2451 3.067601 TCGTTACTATGCATCACCACGAT 59.932 43.478 15.99 0.00 30.86 3.73
2421 2452 2.424246 TCGTTACTATGCATCACCACGA 59.576 45.455 15.99 15.99 33.27 4.35
2422 2453 2.789339 CTCGTTACTATGCATCACCACG 59.211 50.000 0.19 8.74 0.00 4.94
2423 2454 4.041740 TCTCGTTACTATGCATCACCAC 57.958 45.455 0.19 0.00 0.00 4.16
2424 2455 3.068165 CCTCTCGTTACTATGCATCACCA 59.932 47.826 0.19 0.00 0.00 4.17
2425 2456 3.553096 CCCTCTCGTTACTATGCATCACC 60.553 52.174 0.19 0.00 0.00 4.02
2426 2457 3.553096 CCCCTCTCGTTACTATGCATCAC 60.553 52.174 0.19 0.00 0.00 3.06
2427 2458 2.628178 CCCCTCTCGTTACTATGCATCA 59.372 50.000 0.19 0.00 0.00 3.07
2428 2459 2.891580 TCCCCTCTCGTTACTATGCATC 59.108 50.000 0.19 0.00 0.00 3.91
2429 2460 2.894126 CTCCCCTCTCGTTACTATGCAT 59.106 50.000 3.79 3.79 0.00 3.96
2430 2461 2.092049 TCTCCCCTCTCGTTACTATGCA 60.092 50.000 0.00 0.00 0.00 3.96
2431 2462 2.554893 CTCTCCCCTCTCGTTACTATGC 59.445 54.545 0.00 0.00 0.00 3.14
2432 2463 3.566322 CACTCTCCCCTCTCGTTACTATG 59.434 52.174 0.00 0.00 0.00 2.23
2433 2464 3.202595 ACACTCTCCCCTCTCGTTACTAT 59.797 47.826 0.00 0.00 0.00 2.12
2434 2465 2.575279 ACACTCTCCCCTCTCGTTACTA 59.425 50.000 0.00 0.00 0.00 1.82
2435 2466 1.355043 ACACTCTCCCCTCTCGTTACT 59.645 52.381 0.00 0.00 0.00 2.24
2436 2467 1.836802 ACACTCTCCCCTCTCGTTAC 58.163 55.000 0.00 0.00 0.00 2.50
2437 2468 2.168496 CAACACTCTCCCCTCTCGTTA 58.832 52.381 0.00 0.00 0.00 3.18
2438 2469 0.969894 CAACACTCTCCCCTCTCGTT 59.030 55.000 0.00 0.00 0.00 3.85
2439 2470 0.178958 ACAACACTCTCCCCTCTCGT 60.179 55.000 0.00 0.00 0.00 4.18
2440 2471 0.528470 GACAACACTCTCCCCTCTCG 59.472 60.000 0.00 0.00 0.00 4.04
2441 2472 1.931635 AGACAACACTCTCCCCTCTC 58.068 55.000 0.00 0.00 0.00 3.20
2442 2473 2.810164 GTAGACAACACTCTCCCCTCT 58.190 52.381 0.00 0.00 0.00 3.69
2443 2474 1.473278 CGTAGACAACACTCTCCCCTC 59.527 57.143 0.00 0.00 0.00 4.30
2444 2475 1.203025 ACGTAGACAACACTCTCCCCT 60.203 52.381 0.00 0.00 0.00 4.79
2445 2476 1.254954 ACGTAGACAACACTCTCCCC 58.745 55.000 0.00 0.00 0.00 4.81
2446 2477 2.163211 GGTACGTAGACAACACTCTCCC 59.837 54.545 0.00 0.00 0.00 4.30
2447 2478 2.163211 GGGTACGTAGACAACACTCTCC 59.837 54.545 0.00 0.00 0.00 3.71
2448 2479 3.080319 AGGGTACGTAGACAACACTCTC 58.920 50.000 0.00 0.00 0.00 3.20
2449 2480 3.080319 GAGGGTACGTAGACAACACTCT 58.920 50.000 9.87 0.00 39.95 3.24
2450 2481 2.159599 CGAGGGTACGTAGACAACACTC 60.160 54.545 7.48 7.48 39.74 3.51
2451 2482 1.808945 CGAGGGTACGTAGACAACACT 59.191 52.381 0.00 0.00 0.00 3.55
2452 2483 1.537202 ACGAGGGTACGTAGACAACAC 59.463 52.381 0.00 0.00 44.72 3.32
2453 2484 1.896220 ACGAGGGTACGTAGACAACA 58.104 50.000 0.00 0.00 44.72 3.33
2477 2508 2.799540 GCTAACGCTTCCGCTTCCG 61.800 63.158 0.00 0.00 38.22 4.30
2478 2509 1.740296 TGCTAACGCTTCCGCTTCC 60.740 57.895 0.00 0.00 38.22 3.46
2479 2510 1.289109 TGTGCTAACGCTTCCGCTTC 61.289 55.000 0.00 0.00 38.22 3.86
2480 2511 0.882927 TTGTGCTAACGCTTCCGCTT 60.883 50.000 0.00 0.00 38.22 4.68
2481 2512 1.301401 TTGTGCTAACGCTTCCGCT 60.301 52.632 0.00 0.00 38.22 5.52
2482 2513 1.154469 GTTGTGCTAACGCTTCCGC 60.154 57.895 0.00 0.00 38.22 5.54
2483 2514 1.129809 CGTTGTGCTAACGCTTCCG 59.870 57.895 12.46 0.00 36.82 4.30
2489 2520 1.438059 CAACCGCGTTGTGCTAACG 60.438 57.895 18.25 18.25 45.56 3.18
2490 2521 0.515564 ATCAACCGCGTTGTGCTAAC 59.484 50.000 16.97 0.00 43.23 2.34
2491 2522 0.515127 CATCAACCGCGTTGTGCTAA 59.485 50.000 16.97 2.99 43.23 3.09
2492 2523 0.601576 ACATCAACCGCGTTGTGCTA 60.602 50.000 16.97 3.28 43.23 3.49
2493 2524 0.601576 TACATCAACCGCGTTGTGCT 60.602 50.000 16.97 6.88 43.23 4.40
2494 2525 0.179225 CTACATCAACCGCGTTGTGC 60.179 55.000 16.97 0.00 43.23 4.57
2495 2526 1.126113 GACTACATCAACCGCGTTGTG 59.874 52.381 16.97 15.92 43.23 3.33
2496 2527 1.425412 GACTACATCAACCGCGTTGT 58.575 50.000 16.97 9.99 43.23 3.32
2497 2528 0.365523 CGACTACATCAACCGCGTTG 59.634 55.000 4.92 10.14 43.99 4.10
2498 2529 0.038892 ACGACTACATCAACCGCGTT 60.039 50.000 4.92 0.00 0.00 4.84
2499 2530 0.804364 TACGACTACATCAACCGCGT 59.196 50.000 4.92 0.00 0.00 6.01
2500 2531 1.186030 GTACGACTACATCAACCGCG 58.814 55.000 0.00 0.00 0.00 6.46
2501 2532 1.186030 CGTACGACTACATCAACCGC 58.814 55.000 10.44 0.00 0.00 5.68
2502 2533 2.094894 AGACGTACGACTACATCAACCG 59.905 50.000 24.41 0.00 0.00 4.44
2503 2534 3.754188 AGACGTACGACTACATCAACC 57.246 47.619 24.41 0.00 0.00 3.77
2504 2535 4.552660 GTGAAGACGTACGACTACATCAAC 59.447 45.833 24.41 11.90 0.00 3.18
2505 2536 4.667415 CGTGAAGACGTACGACTACATCAA 60.667 45.833 24.41 4.49 42.54 2.57
2506 2537 3.181527 CGTGAAGACGTACGACTACATCA 60.182 47.826 24.41 18.00 42.54 3.07
2507 2538 3.340552 CGTGAAGACGTACGACTACATC 58.659 50.000 24.41 15.62 42.54 3.06
2508 2539 2.094894 CCGTGAAGACGTACGACTACAT 59.905 50.000 24.41 6.17 44.54 2.29
2509 2540 1.460743 CCGTGAAGACGTACGACTACA 59.539 52.381 24.41 13.28 44.54 2.74
2510 2541 1.788344 GCCGTGAAGACGTACGACTAC 60.788 57.143 24.41 15.53 44.54 2.73
2511 2542 0.443869 GCCGTGAAGACGTACGACTA 59.556 55.000 24.41 3.99 44.54 2.59
2512 2543 1.208614 GCCGTGAAGACGTACGACT 59.791 57.895 24.41 19.11 44.54 4.18
2513 2544 1.799121 GGCCGTGAAGACGTACGAC 60.799 63.158 24.41 16.77 44.54 4.34
2514 2545 2.562912 GGCCGTGAAGACGTACGA 59.437 61.111 24.41 0.00 44.54 3.43
2515 2546 2.505557 GGGCCGTGAAGACGTACG 60.506 66.667 15.01 15.01 44.54 3.67
2516 2547 2.505557 CGGGCCGTGAAGACGTAC 60.506 66.667 19.97 0.00 44.54 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.