AutoCloner

Multiple sequence alignment - TraesCS6A01G323100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G323100	chr6A	100.000	3120	0	0	1	3120	556679807	556676688	0.000000e+00	5762.0
1	TraesCS6A01G323100	chr6A	80.088	914	118	42	1638	2534	99973631	99974497	3.420000e-174	621.0
2	TraesCS6A01G323100	chr6A	92.329	365	17	5	2623	2985	556669959	556669604	2.780000e-140	508.0
3	TraesCS6A01G323100	chr6A	85.030	167	22	3	408	573	595480467	595480303	1.920000e-37	167.0
4	TraesCS6A01G323100	chr6A	81.982	111	9	2	303	402	115345453	115345563	1.990000e-12	84.2
5	TraesCS6A01G323100	chr6B	89.333	1650	99	28	733	2327	619494303	619492676	0.000000e+00	2001.0
6	TraesCS6A01G323100	chr6B	90.965	819	40	11	2329	3120	619484624	619483813	0.000000e+00	1072.0
7	TraesCS6A01G323100	chr6B	87.384	539	35	15	2590	3106	619405093	619404566	3.470000e-164	588.0
8	TraesCS6A01G323100	chr6B	80.249	562	74	21	73	632	619494880	619494354	3.770000e-104	388.0
9	TraesCS6A01G323100	chr6B	76.393	610	94	30	1685	2287	158066893	158067459	1.830000e-72	283.0
10	TraesCS6A01G323100	chr6D	85.366	1845	190	49	1316	3120	411768809	411767005	0.000000e+00	1838.0
11	TraesCS6A01G323100	chr6D	85.212	1224	83	24	148	1308	411770039	411768851	0.000000e+00	1168.0
12	TraesCS6A01G323100	chr6D	87.843	510	34	17	2590	3088	411726395	411725903	9.710000e-160	573.0
13	TraesCS6A01G323100	chr6D	78.194	720	98	30	1829	2534	83042019	83042693	3.750000e-109	405.0
14	TraesCS6A01G323100	chr6D	94.872	78	4	0	1	78	411770141	411770064	4.230000e-24	122.0
15	TraesCS6A01G323100	chr5D	85.518	801	83	15	1536	2327	358668932	358668156	0.000000e+00	806.0
16	TraesCS6A01G323100	chr5D	84.667	150	22	1	420	569	565676786	565676638	6.970000e-32	148.0
17	TraesCS6A01G323100	chr7D	86.643	277	18	10	1625	1899	32581460	32581201	3.940000e-74	289.0
18	TraesCS6A01G323100	chr3A	81.073	354	43	12	2611	2962	541226283	541225952	8.580000e-66	261.0
19	TraesCS6A01G323100	chr3A	81.019	216	24	6	354	569	635393910	635394108	4.170000e-34	156.0
20	TraesCS6A01G323100	chr3A	82.099	162	23	4	414	572	530501983	530501825	1.950000e-27	134.0
21	TraesCS6A01G323100	chr2D	83.398	259	22	11	1974	2232	178526986	178526749	1.460000e-53	220.0
22	TraesCS6A01G323100	chr2D	83.077	260	21	14	1974	2232	178694751	178694514	6.780000e-52	215.0
23	TraesCS6A01G323100	chr2B	81.181	271	27	11	1959	2226	235902575	235902326	2.450000e-46	196.0
24	TraesCS6A01G323100	chr2B	88.312	154	15	1	1955	2105	235899911	235899758	6.870000e-42	182.0
25	TraesCS6A01G323100	chr3D	81.279	219	23	7	352	569	394056195	394055994	8.950000e-36	161.0
26	TraesCS6A01G323100	chr3D	74.825	143	26	8	57	193	606075441	606075303	4.350000e-04	56.5
27	TraesCS6A01G323100	chr4D	83.951	162	22	4	421	581	503360949	503360791	5.390000e-33	152.0
28	TraesCS6A01G323100	chr2A	82.530	166	27	2	409	573	700542610	700542774	9.020000e-31	145.0
29	TraesCS6A01G323100	chrUn	78.125	256	33	13	305	556	239737729	239737493	1.170000e-29	141.0
30	TraesCS6A01G323100	chrUn	78.125	256	33	13	305	556	383689887	383689651	1.170000e-29	141.0
31	TraesCS6A01G323100	chrUn	82.424	165	21	6	419	579	291907630	291907470	1.510000e-28	137.0
32	TraesCS6A01G323100	chr5B	79.186	221	28	9	354	572	546533289	546533493	1.510000e-28	137.0
33	TraesCS6A01G323100	chr5B	79.263	217	28	7	354	569	707453919	707454119	5.430000e-28	135.0
34	TraesCS6A01G323100	chr5B	80.368	163	30	1	411	573	712468701	712468541	4.230000e-24	122.0
35	TraesCS6A01G323100	chr7B	84.167	120	15	4	476	593	519551961	519552078	2.540000e-21	113.0
36	TraesCS6A01G323100	chr1B	81.667	120	20	2	458	577	41264623	41264506	7.120000e-17	99.0
37	TraesCS6A01G323100	chr7A	100.000	28	0	0	17	44	719413663	719413690	6.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G323100	chr6A	556676688	556679807	3119	True	5762.000000	5762	100.000000	1	3120	1	chr6A.!!$R2	3119
1	TraesCS6A01G323100	chr6A	99973631	99974497	866	False	621.000000	621	80.088000	1638	2534	1	chr6A.!!$F1	896
2	TraesCS6A01G323100	chr6B	619492676	619494880	2204	True	1194.500000	2001	84.791000	73	2327	2	chr6B.!!$R3	2254
3	TraesCS6A01G323100	chr6B	619483813	619484624	811	True	1072.000000	1072	90.965000	2329	3120	1	chr6B.!!$R2	791
4	TraesCS6A01G323100	chr6B	619404566	619405093	527	True	588.000000	588	87.384000	2590	3106	1	chr6B.!!$R1	516
5	TraesCS6A01G323100	chr6B	158066893	158067459	566	False	283.000000	283	76.393000	1685	2287	1	chr6B.!!$F1	602
6	TraesCS6A01G323100	chr6D	411767005	411770141	3136	True	1042.666667	1838	88.483333	1	3120	3	chr6D.!!$R2	3119
7	TraesCS6A01G323100	chr6D	83042019	83042693	674	False	405.000000	405	78.194000	1829	2534	1	chr6D.!!$F1	705
8	TraesCS6A01G323100	chr5D	358668156	358668932	776	True	806.000000	806	85.518000	1536	2327	1	chr5D.!!$R1	791

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
733	772	0.042731	AGCCCTTACAGCTAGGTCCA	59.957	55.0	0.37	0.0	39.29	4.02	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2627	2811	0.607112	TGAGCAGCTTGGAGTCAGAG	59.393	55.0	0.0	0.0	0.0	3.35	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
328	330	3.861840	ACTCCGTCTGTTCCATAATGTG	58.138	45.455	0.00	0.00	0.00	3.21
529	541	6.470235	GGTCAAAATTTATGATGCTCGACTTG	59.530	38.462	0.00	0.00	0.00	3.16
644	659	2.799126	TATGGACGTTGATTTGGGCT	57.201	45.000	0.00	0.00	0.00	5.19
670	709	2.680352	TGGAGGGAGCGGTGACTC	60.680	66.667	0.00	0.00	35.86	3.36
692	731	2.332654	GCCCATGTTCACCGGTCAC	61.333	63.158	2.59	5.10	0.00	3.67
733	772	0.042731	AGCCCTTACAGCTAGGTCCA	59.957	55.000	0.37	0.00	39.29	4.02
734	773	0.909623	GCCCTTACAGCTAGGTCCAA	59.090	55.000	0.37	0.00	0.00	3.53
735	774	1.490910	GCCCTTACAGCTAGGTCCAAT	59.509	52.381	0.37	0.00	0.00	3.16
736	775	2.485657	GCCCTTACAGCTAGGTCCAATC	60.486	54.545	0.37	0.00	0.00	2.67
737	776	2.104963	CCCTTACAGCTAGGTCCAATCC	59.895	54.545	0.37	0.00	0.00	3.01
824	863	2.244000	ACGCTTTTGTCCCGTCATG	58.756	52.632	0.00	0.00	0.00	3.07
844	883	3.991242	GGATAAGCCTCTCCGGTTC	57.009	57.895	0.00	0.00	34.25	3.62
1159	1225	4.436998	GTGTGGCGAGGACGGGAG	62.437	72.222	0.00	0.00	40.15	4.30
1312	1378	2.283298	TCGACTGGTACGACACTATCC	58.717	52.381	0.00	0.00	34.85	2.59
1314	1380	2.031807	CGACTGGTACGACACTATCCTG	59.968	54.545	0.00	0.00	0.00	3.86
1324	1424	3.123804	GACACTATCCTGTACCAATGCG	58.876	50.000	0.00	0.00	0.00	4.73
1373	1473	2.490903	CTGCCTTGCTGCTCTGTATTTT	59.509	45.455	0.00	0.00	0.00	1.82
1376	1476	4.082787	TGCCTTGCTGCTCTGTATTTTAAC	60.083	41.667	0.00	0.00	0.00	2.01
1388	1488	7.494625	GCTCTGTATTTTAACCAGCATGTAGTA	59.505	37.037	0.00	0.00	0.00	1.82
1389	1489	8.942338	TCTGTATTTTAACCAGCATGTAGTAG	57.058	34.615	0.00	0.00	0.00	2.57
1390	1490	8.537016	TCTGTATTTTAACCAGCATGTAGTAGT	58.463	33.333	0.00	0.00	0.00	2.73
1560	1664	5.473039	GTTGGTCTGAATTCCTTGAAATGG	58.527	41.667	2.27	0.00	0.00	3.16
1569	1678	1.611491	TCCTTGAAATGGTTTCGTGCC	59.389	47.619	0.00	0.00	42.55	5.01
1570	1679	1.665735	CCTTGAAATGGTTTCGTGCCG	60.666	52.381	0.00	0.00	42.55	5.69
1571	1680	1.001815	CTTGAAATGGTTTCGTGCCGT	60.002	47.619	0.00	0.00	42.55	5.68
1572	1681	0.309302	TGAAATGGTTTCGTGCCGTG	59.691	50.000	0.00	0.00	42.55	4.94
1573	1682	0.309612	GAAATGGTTTCGTGCCGTGT	59.690	50.000	0.00	0.00	0.00	4.49
1612	1721	5.181009	TCATGATTCTTCGCACTGAGATTT	58.819	37.500	0.00	0.00	0.00	2.17
1630	1755	8.217131	TGAGATTTGATATCCACAACAATCAG	57.783	34.615	0.00	0.00	30.53	2.90
1672	1797	3.380004	AGCAATCTCTTGACTCGGACTAG	59.620	47.826	0.00	0.00	34.04	2.57
1707	1832	4.096382	TGTTTCTTTTGCAGAGTCAGGTTC	59.904	41.667	0.00	0.00	31.12	3.62
1782	1912	2.350522	AGCGTAAGTCAGCAGATTTGG	58.649	47.619	0.00	0.00	41.68	3.28
1787	1917	3.439857	AAGTCAGCAGATTTGGGCTTA	57.560	42.857	0.00	0.00	38.56	3.09
1788	1918	2.996631	AGTCAGCAGATTTGGGCTTAG	58.003	47.619	0.00	0.00	38.56	2.18
1790	1920	0.379669	CAGCAGATTTGGGCTTAGCG	59.620	55.000	0.00	0.00	38.56	4.26
1820	1953	7.229106	CCACTTCAATTTGAATGGGAAATTTGT	59.771	33.333	21.06	8.90	35.59	2.83
1825	1958	7.659390	TCAATTTGAATGGGAAATTTGTGTACC	59.341	33.333	0.00	0.00	31.96	3.34
1826	1959	4.775058	TGAATGGGAAATTTGTGTACCG	57.225	40.909	0.00	0.00	0.00	4.02
1858	1995	6.264067	TCACAACGACTCTGATATCATCTGAT	59.736	38.462	5.72	0.00	36.78	2.90
1904	2045	3.008330	CTCCCATTTGTCTCTGCTTCTG	58.992	50.000	0.00	0.00	0.00	3.02
1923	2064	0.968405	GCCTTCAGAAAATGCCCACA	59.032	50.000	0.00	0.00	0.00	4.17
1939	2080	2.482721	CCCACAATTCAGGTAACGTCAC	59.517	50.000	0.00	0.00	46.39	3.67
1953	2099	7.744715	CAGGTAACGTCACATTTATTTCTGAAC	59.255	37.037	0.00	0.00	46.39	3.18
1957	2103	6.899114	ACGTCACATTTATTTCTGAACTTCC	58.101	36.000	0.00	0.00	0.00	3.46
1959	2105	6.347402	CGTCACATTTATTTCTGAACTTCCGT	60.347	38.462	0.00	0.00	0.00	4.69
1963	2109	7.746475	CACATTTATTTCTGAACTTCCGTCTTC	59.254	37.037	0.00	0.00	0.00	2.87
1983	2129	7.410485	GTCTTCGTCCCTTTATGATTGAAATC	58.590	38.462	0.00	0.00	35.97	2.17
2098	2251	3.963374	TGGTGATGGATGAGGTTAGAGAG	59.037	47.826	0.00	0.00	0.00	3.20
2197	2352	6.713450	ACACTGTAACCCGATCAATAAAACTT	59.287	34.615	0.00	0.00	0.00	2.66
2264	2424	6.395426	TCTGTTGCAAGATTTCACTTGAAT	57.605	33.333	0.00	0.00	46.85	2.57
2265	2425	7.509141	TCTGTTGCAAGATTTCACTTGAATA	57.491	32.000	0.00	2.82	46.85	1.75
2479	2653	6.000246	TCAATGAACATATCTACAAGGCCA	58.000	37.500	5.01	0.00	0.00	5.36
2506	2685	9.755804	CAGCTAATCTGATTTACATGAGAGTTA	57.244	33.333	8.38	0.00	45.72	2.24
2557	2736	3.566742	GTCAAACCACGATAACAAACCCT	59.433	43.478	0.00	0.00	0.00	4.34
2577	2761	4.324563	CCCTGGACAGTTCAGAATTACCAT	60.325	45.833	10.87	0.00	34.36	3.55
2579	2763	5.241403	TGGACAGTTCAGAATTACCATGT	57.759	39.130	0.00	0.00	0.00	3.21
2627	2811	0.438830	CGTCAGAACTAAGCAACCGC	59.561	55.000	0.00	0.00	38.99	5.68
2695	2883	1.066002	ACGACCACGAAGAAGACGAAA	59.934	47.619	0.00	0.00	42.66	3.46
2700	2888	2.348591	CCACGAAGAAGACGAAAACAGC	60.349	50.000	0.00	0.00	34.70	4.40
2701	2889	1.521423	ACGAAGAAGACGAAAACAGCG	59.479	47.619	0.00	0.00	34.70	5.18
2702	2890	1.784856	CGAAGAAGACGAAAACAGCGA	59.215	47.619	0.00	0.00	0.00	4.93
2703	2891	2.217847	CGAAGAAGACGAAAACAGCGAA	59.782	45.455	0.00	0.00	0.00	4.70
2704	2892	3.659364	CGAAGAAGACGAAAACAGCGAAG	60.659	47.826	0.00	0.00	0.00	3.79
2705	2893	2.135933	AGAAGACGAAAACAGCGAAGG	58.864	47.619	0.00	0.00	0.00	3.46
2709	2897	1.130613	CGAAAACAGCGAAGGCGAG	59.869	57.895	0.00	0.00	46.35	5.03
2943	3134	3.543536	GATGAGCGCCTCCCCCATC	62.544	68.421	2.29	4.35	0.00	3.51
2945	3136	3.564218	GAGCGCCTCCCCCATCAT	61.564	66.667	2.29	0.00	0.00	2.45
2980	3171	1.341531	AGGGGTCGATCGATCAATCAC	59.658	52.381	28.32	13.12	0.00	3.06
2990	3181	5.551760	ATCGATCAATCACTCAACCAAAC	57.448	39.130	0.00	0.00	0.00	2.93
2991	3182	3.431912	TCGATCAATCACTCAACCAAACG	59.568	43.478	0.00	0.00	0.00	3.60
2992	3183	3.431912	CGATCAATCACTCAACCAAACGA	59.568	43.478	0.00	0.00	0.00	3.85
3058	3278	0.533755	CGATCTGGATGGTGGCCTTC	60.534	60.000	3.32	0.00	0.00	3.46

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
132	133	6.465781	CACGTGTTTCAGAAATATGTATGTGC	59.534	38.462	15.07	0.00	31.62	4.57
135	136	8.227119	TGTTCACGTGTTTCAGAAATATGTATG	58.773	33.333	16.51	6.64	31.62	2.39
219	220	6.037940	TGTTAACACGGTGTACAAAATTAGCA	59.962	34.615	15.11	6.75	0.00	3.49
341	344	7.929941	TTGGCCAAAGTTTGACTTTAAAAAT	57.070	28.000	17.98	0.00	45.84	1.82
538	550	9.710900	TCTGTTTCATAATGTAGTGCATATAGG	57.289	33.333	0.00	0.00	36.67	2.57
613	628	4.998672	TCAACGTCCATATTTCCGTTCTTT	59.001	37.500	0.00	0.00	41.14	2.52
616	631	5.479716	AATCAACGTCCATATTTCCGTTC	57.520	39.130	0.00	0.00	41.14	3.95
644	659	2.367377	CTCCCTCCAGATGGGCCA	60.367	66.667	9.61	9.61	44.23	5.36
663	702	4.489771	CATGGGCCCCGAGTCACC	62.490	72.222	22.27	0.00	0.00	4.02
692	731	2.681778	ACTGTCTCCGGCCCAGAG	60.682	66.667	18.04	11.46	0.00	3.35
733	772	1.163420	TGTTGCGTGCGAGTTGGATT	61.163	50.000	0.00	0.00	0.00	3.01
734	773	1.596752	TGTTGCGTGCGAGTTGGAT	60.597	52.632	0.00	0.00	0.00	3.41
735	774	2.202946	TGTTGCGTGCGAGTTGGA	60.203	55.556	0.00	0.00	0.00	3.53
736	775	2.052237	GTGTTGCGTGCGAGTTGG	60.052	61.111	0.00	0.00	0.00	3.77
737	776	0.522286	TTTGTGTTGCGTGCGAGTTG	60.522	50.000	0.00	0.00	0.00	3.16
979	1030	1.287503	GCTCGATAGCTTCCCGGAG	59.712	63.158	0.73	0.00	45.85	4.63
990	1041	1.595109	CAGCGGCATTGGCTCGATA	60.595	57.895	8.71	0.00	39.08	2.92
1145	1208	4.689549	TTCCTCCCGTCCTCGCCA	62.690	66.667	0.00	0.00	35.54	5.69
1155	1221	1.690985	CCTCACCCCTCTTCCTCCC	60.691	68.421	0.00	0.00	0.00	4.30
1159	1225	3.787001	CGCCCTCACCCCTCTTCC	61.787	72.222	0.00	0.00	0.00	3.46
1312	1378	3.975992	GCAACTCGCATTGGTACAG	57.024	52.632	0.00	0.00	39.82	2.74
1324	1424	1.578423	GGAAGCTGCACTGCAACTC	59.422	57.895	7.39	3.27	38.41	3.01
1373	1473	6.627243	CAACAGTACTACTACATGCTGGTTA	58.373	40.000	0.00	0.00	0.00	2.85
1376	1476	3.865745	GCAACAGTACTACTACATGCTGG	59.134	47.826	0.00	0.00	31.54	4.85
1388	1488	5.238583	GTTGAATACCAGAGCAACAGTACT	58.761	41.667	0.00	0.00	40.11	2.73
1389	1489	4.392138	GGTTGAATACCAGAGCAACAGTAC	59.608	45.833	0.00	0.00	46.92	2.73
1390	1490	4.575885	GGTTGAATACCAGAGCAACAGTA	58.424	43.478	0.00	0.00	46.92	2.74
1424	1524	2.069465	CTCAGCGTCTGATCCGAGGG	62.069	65.000	9.47	0.00	39.92	4.30
1569	1678	5.150342	TGAAACTGTATCAACACAACACG	57.850	39.130	0.00	0.00	0.00	4.49
1570	1679	6.724263	TCATGAAACTGTATCAACACAACAC	58.276	36.000	0.00	0.00	0.00	3.32
1571	1680	6.934048	TCATGAAACTGTATCAACACAACA	57.066	33.333	0.00	0.00	0.00	3.33
1572	1681	8.292448	AGAATCATGAAACTGTATCAACACAAC	58.708	33.333	0.00	0.00	0.00	3.32
1573	1682	8.394971	AGAATCATGAAACTGTATCAACACAA	57.605	30.769	0.00	0.00	0.00	3.33
1612	1721	5.084818	ACGACTGATTGTTGTGGATATCA	57.915	39.130	4.83	0.00	41.49	2.15
1630	1755	1.225855	TCTGCACATTCCACAACGAC	58.774	50.000	0.00	0.00	0.00	4.34
1663	1788	1.779569	AACGTTGTTGCTAGTCCGAG	58.220	50.000	0.00	0.00	0.00	4.63
1707	1832	8.237267	GGAACTTTATTGACATCCACAAAGTAG	58.763	37.037	0.00	0.00	35.71	2.57
1787	1917	2.778299	TCAAATTGAAGTGGCTACGCT	58.222	42.857	0.00	0.00	39.64	5.07
1788	1918	3.552604	TTCAAATTGAAGTGGCTACGC	57.447	42.857	4.03	0.00	31.83	4.42
1790	1920	4.462483	TCCCATTCAAATTGAAGTGGCTAC	59.538	41.667	21.24	0.00	40.05	3.58
1809	1942	3.508012	CCAATCGGTACACAAATTTCCCA	59.492	43.478	0.00	0.00	0.00	4.37
1825	1958	2.155732	CAGAGTCGTTGTGAACCAATCG	59.844	50.000	0.00	0.00	35.02	3.34
1826	1959	3.390135	TCAGAGTCGTTGTGAACCAATC	58.610	45.455	0.00	0.00	35.02	2.67
1858	1995	9.023962	AGCCATGACAGAATCAAAATAAACTTA	57.976	29.630	0.00	0.00	41.93	2.24
1904	2045	0.968405	TGTGGGCATTTTCTGAAGGC	59.032	50.000	0.00	0.00	0.00	4.35
1923	2064	9.010029	AGAAATAAATGTGACGTTACCTGAATT	57.990	29.630	8.11	0.00	0.00	2.17
1953	2099	3.119245	TCATAAAGGGACGAAGACGGAAG	60.119	47.826	0.00	0.00	44.46	3.46
1957	2103	4.430007	TCAATCATAAAGGGACGAAGACG	58.570	43.478	0.00	0.00	45.75	4.18
1959	2105	7.109501	TGATTTCAATCATAAAGGGACGAAGA	58.890	34.615	0.00	0.00	40.32	2.87
1983	2129	5.747675	AGAGCATCGCGATAAGATATTCATG	59.252	40.000	23.22	7.46	42.67	3.07
1990	2139	8.709386	AATTAATAAGAGCATCGCGATAAGAT	57.291	30.769	23.22	9.38	42.67	2.40
1997	2146	5.050091	ACTGGAAATTAATAAGAGCATCGCG	60.050	40.000	0.00	0.00	42.67	5.87
1998	2147	6.305693	ACTGGAAATTAATAAGAGCATCGC	57.694	37.500	0.00	0.00	42.67	4.58
2098	2251	5.809562	CAGTCACTTGTACTTCTGGATCATC	59.190	44.000	0.00	0.00	0.00	2.92
2197	2352	7.564793	TCTGCTGTATTAAGGAGCTGAAATAA	58.435	34.615	0.00	0.00	37.63	1.40
2233	2392	6.471519	GTGAAATCTTGCAACAGATCAATAGC	59.528	38.462	0.00	0.00	31.87	2.97
2287	2447	2.093500	TCTGATCAGTGCACCATGTACC	60.093	50.000	21.92	1.39	33.24	3.34
2288	2448	3.251479	TCTGATCAGTGCACCATGTAC	57.749	47.619	21.92	5.89	32.95	2.90
2350	2524	5.989551	AATTTGTTTCCATTGACTTGTGC	57.010	34.783	0.00	0.00	0.00	4.57
2373	2547	3.750371	TGTGGATTGTTCGGTTCTTCAT	58.250	40.909	0.00	0.00	0.00	2.57
2479	2653	7.790027	ACTCTCATGTAAATCAGATTAGCTGT	58.210	34.615	0.00	0.00	45.14	4.40
2557	2736	5.241403	ACATGGTAATTCTGAACTGTCCA	57.759	39.130	0.00	0.40	0.00	4.02
2577	2761	5.053145	GGTAGCTACTAGTACTAGCGAACA	58.947	45.833	26.54	9.40	41.40	3.18
2579	2763	4.101585	TGGGTAGCTACTAGTACTAGCGAA	59.898	45.833	26.54	13.35	41.40	4.70
2627	2811	0.607112	TGAGCAGCTTGGAGTCAGAG	59.393	55.000	0.00	0.00	0.00	3.35
2628	2812	1.051008	TTGAGCAGCTTGGAGTCAGA	58.949	50.000	0.00	0.00	0.00	3.27
2938	3126	2.516930	GCCGGTGACCATGATGGG	60.517	66.667	17.04	0.00	43.37	4.00
2980	3171	2.744202	CAAGGGATCTCGTTTGGTTGAG	59.256	50.000	0.00	0.00	0.00	3.02
2990	3181	0.467384	ATCAGCCACAAGGGATCTCG	59.533	55.000	0.00	0.00	40.01	4.04
2991	3182	1.487976	TCATCAGCCACAAGGGATCTC	59.512	52.381	0.00	0.00	40.01	2.75
2992	3183	1.588239	TCATCAGCCACAAGGGATCT	58.412	50.000	0.00	0.00	40.01	2.75
3090	3310	3.982241	AAGCACAAGCCAAGCGCC	61.982	61.111	2.29	0.00	43.56	6.53

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.