Multiple sequence alignment - TraesCS6A01G323000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G323000 chr6A 100.000 2330 0 0 1 2330 556675862 556678191 0.000000e+00 4303.0
1 TraesCS6A01G323000 chr6A 80.088 914 118 42 1413 2309 99974497 99973631 2.540000e-174 621.0
2 TraesCS6A01G323000 chr6A 80.946 782 69 37 561 1324 556669240 556669959 1.570000e-151 545.0
3 TraesCS6A01G323000 chr6D 86.405 2192 179 65 191 2330 411766371 411768495 0.000000e+00 2287.0
4 TraesCS6A01G323000 chr6D 85.248 644 40 24 726 1357 411725795 411726395 1.530000e-171 612.0
5 TraesCS6A01G323000 chr6D 78.194 720 98 30 1413 2118 83042693 83042019 2.790000e-109 405.0
6 TraesCS6A01G323000 chr6D 76.730 159 15 13 561 712 411725653 411725796 4.150000e-08 69.4
7 TraesCS6A01G323000 chr6B 89.409 1473 78 30 191 1618 619483185 619484624 0.000000e+00 1784.0
8 TraesCS6A01G323000 chr6B 88.661 732 54 13 1620 2330 619492676 619493399 0.000000e+00 865.0
9 TraesCS6A01G323000 chr6B 85.518 656 37 20 724 1357 619404474 619405093 1.170000e-177 632.0
10 TraesCS6A01G323000 chr6B 76.393 610 94 30 1660 2262 158067459 158066893 1.360000e-72 283.0
11 TraesCS6A01G323000 chr5D 87.042 710 71 11 1620 2322 358668156 358668851 0.000000e+00 782.0
12 TraesCS6A01G323000 chr7D 86.643 277 18 10 2048 2322 32581201 32581460 2.930000e-74 289.0
13 TraesCS6A01G323000 chr3A 81.073 354 43 12 985 1336 541225952 541226283 6.390000e-66 261.0
14 TraesCS6A01G323000 chr2D 83.398 259 22 11 1715 1973 178526749 178526986 1.080000e-53 220.0
15 TraesCS6A01G323000 chr2D 83.077 260 21 14 1715 1973 178694514 178694751 5.040000e-52 215.0
16 TraesCS6A01G323000 chr2D 92.126 127 7 3 72 198 431734031 431734154 2.380000e-40 176.0
17 TraesCS6A01G323000 chr2B 81.181 271 27 11 1721 1988 235902326 235902575 1.830000e-46 196.0
18 TraesCS6A01G323000 chr2B 88.312 154 15 1 1842 1992 235899758 235899911 5.110000e-42 182.0
19 TraesCS6A01G323000 chr2B 94.068 118 7 0 72 189 571949478 571949595 1.840000e-41 180.0
20 TraesCS6A01G323000 chr2B 93.220 118 8 0 72 189 15736596 15736713 8.560000e-40 174.0
21 TraesCS6A01G323000 chr2B 93.220 118 8 0 72 189 15799223 15799340 8.560000e-40 174.0
22 TraesCS6A01G323000 chr2B 93.220 118 8 0 72 189 15897262 15897379 8.560000e-40 174.0
23 TraesCS6A01G323000 chr1A 98.182 110 2 0 72 181 282551952 282551843 2.360000e-45 193.0
24 TraesCS6A01G323000 chr1A 94.017 117 6 1 72 188 388684998 388684883 2.380000e-40 176.0
25 TraesCS6A01G323000 chr1B 92.683 123 7 2 72 193 169937770 169937649 2.380000e-40 176.0
26 TraesCS6A01G323000 chr5B 91.270 126 10 1 72 196 44454466 44454341 1.110000e-38 171.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G323000 chr6A 556675862 556678191 2329 False 4303.0 4303 100.000 1 2330 1 chr6A.!!$F2 2329
1 TraesCS6A01G323000 chr6A 99973631 99974497 866 True 621.0 621 80.088 1413 2309 1 chr6A.!!$R1 896
2 TraesCS6A01G323000 chr6A 556669240 556669959 719 False 545.0 545 80.946 561 1324 1 chr6A.!!$F1 763
3 TraesCS6A01G323000 chr6D 411766371 411768495 2124 False 2287.0 2287 86.405 191 2330 1 chr6D.!!$F1 2139
4 TraesCS6A01G323000 chr6D 83042019 83042693 674 True 405.0 405 78.194 1413 2118 1 chr6D.!!$R1 705
5 TraesCS6A01G323000 chr6D 411725653 411726395 742 False 340.7 612 80.989 561 1357 2 chr6D.!!$F2 796
6 TraesCS6A01G323000 chr6B 619483185 619484624 1439 False 1784.0 1784 89.409 191 1618 1 chr6B.!!$F2 1427
7 TraesCS6A01G323000 chr6B 619492676 619493399 723 False 865.0 865 88.661 1620 2330 1 chr6B.!!$F3 710
8 TraesCS6A01G323000 chr6B 619404474 619405093 619 False 632.0 632 85.518 724 1357 1 chr6B.!!$F1 633
9 TraesCS6A01G323000 chr6B 158066893 158067459 566 True 283.0 283 76.393 1660 2262 1 chr6B.!!$R1 602
10 TraesCS6A01G323000 chr5D 358668156 358668851 695 False 782.0 782 87.042 1620 2322 1 chr5D.!!$F1 702

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
56 57 0.034616 ACAGCTTGCAGGACTGTCTC 59.965 55.0 16.32 0.0 40.56 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2022 2157 0.968405 GCCTTCAGAAAATGCCCACA 59.032 50.0 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.492673 GATGGTCAAAACACACATATTCTAGA 57.507 34.615 0.00 0.00 0.00 2.43
26 27 8.862325 ATGGTCAAAACACACATATTCTAGAA 57.138 30.769 7.82 7.82 0.00 2.10
27 28 8.684386 TGGTCAAAACACACATATTCTAGAAA 57.316 30.769 9.71 0.00 0.00 2.52
28 29 8.783093 TGGTCAAAACACACATATTCTAGAAAG 58.217 33.333 9.71 5.40 0.00 2.62
29 30 8.999431 GGTCAAAACACACATATTCTAGAAAGA 58.001 33.333 9.71 0.83 0.00 2.52
31 32 9.996554 TCAAAACACACATATTCTAGAAAGAGA 57.003 29.630 9.71 0.00 31.96 3.10
34 35 8.430801 AACACACATATTCTAGAAAGAGATGC 57.569 34.615 9.71 0.00 33.36 3.91
35 36 7.790027 ACACACATATTCTAGAAAGAGATGCT 58.210 34.615 9.71 0.00 33.36 3.79
36 37 8.918116 ACACACATATTCTAGAAAGAGATGCTA 58.082 33.333 9.71 0.00 33.36 3.49
37 38 9.755804 CACACATATTCTAGAAAGAGATGCTAA 57.244 33.333 9.71 0.00 33.36 3.09
38 39 9.757227 ACACATATTCTAGAAAGAGATGCTAAC 57.243 33.333 9.71 0.00 33.36 2.34
39 40 9.755804 CACATATTCTAGAAAGAGATGCTAACA 57.244 33.333 9.71 0.00 33.36 2.41
40 41 9.979578 ACATATTCTAGAAAGAGATGCTAACAG 57.020 33.333 9.71 0.00 33.36 3.16
41 42 8.924691 CATATTCTAGAAAGAGATGCTAACAGC 58.075 37.037 9.71 0.00 35.80 4.40
43 44 6.537453 TCTAGAAAGAGATGCTAACAGCTT 57.463 37.500 0.00 0.00 44.20 3.74
44 45 6.336566 TCTAGAAAGAGATGCTAACAGCTTG 58.663 40.000 0.00 0.00 44.20 4.01
45 46 3.688673 AGAAAGAGATGCTAACAGCTTGC 59.311 43.478 0.00 0.00 44.20 4.01
46 47 2.775911 AGAGATGCTAACAGCTTGCA 57.224 45.000 0.00 3.47 44.20 4.08
47 48 2.630158 AGAGATGCTAACAGCTTGCAG 58.370 47.619 0.00 0.00 44.20 4.41
48 49 1.669779 GAGATGCTAACAGCTTGCAGG 59.330 52.381 0.00 0.00 44.20 4.85
49 50 1.280133 AGATGCTAACAGCTTGCAGGA 59.720 47.619 0.00 0.00 40.37 3.86
50 51 1.399791 GATGCTAACAGCTTGCAGGAC 59.600 52.381 0.00 0.00 42.97 3.85
51 52 0.397941 TGCTAACAGCTTGCAGGACT 59.602 50.000 0.00 0.00 42.97 3.85
52 53 0.801251 GCTAACAGCTTGCAGGACTG 59.199 55.000 15.28 15.28 38.45 3.51
53 54 1.879796 GCTAACAGCTTGCAGGACTGT 60.880 52.381 16.32 16.32 46.27 3.55
54 55 2.072298 CTAACAGCTTGCAGGACTGTC 58.928 52.381 20.27 0.00 43.63 3.51
55 56 0.471617 AACAGCTTGCAGGACTGTCT 59.528 50.000 20.27 11.52 43.63 3.41
56 57 0.034616 ACAGCTTGCAGGACTGTCTC 59.965 55.000 16.32 0.00 40.56 3.36
57 58 0.673022 CAGCTTGCAGGACTGTCTCC 60.673 60.000 7.85 0.00 39.81 3.71
58 59 1.739562 GCTTGCAGGACTGTCTCCG 60.740 63.158 7.85 0.00 45.10 4.63
59 60 1.668294 CTTGCAGGACTGTCTCCGT 59.332 57.895 7.85 0.00 45.10 4.69
60 61 0.888619 CTTGCAGGACTGTCTCCGTA 59.111 55.000 7.85 0.00 45.10 4.02
61 62 0.601558 TTGCAGGACTGTCTCCGTAC 59.398 55.000 7.85 0.00 45.10 3.67
62 63 1.136984 GCAGGACTGTCTCCGTACG 59.863 63.158 8.69 8.69 45.10 3.67
63 64 1.303799 GCAGGACTGTCTCCGTACGA 61.304 60.000 18.76 1.79 45.10 3.43
64 65 0.727970 CAGGACTGTCTCCGTACGAG 59.272 60.000 18.76 12.27 45.10 4.18
65 66 0.392729 AGGACTGTCTCCGTACGAGG 60.393 60.000 18.76 8.95 45.10 4.63
66 67 1.428620 GACTGTCTCCGTACGAGGC 59.571 63.158 18.76 13.98 44.07 4.70
68 69 1.136984 CTGTCTCCGTACGAGGCAC 59.863 63.158 18.76 8.15 46.35 5.01
69 70 1.303074 TGTCTCCGTACGAGGCACT 60.303 57.895 18.76 0.00 46.35 4.40
70 71 1.303799 TGTCTCCGTACGAGGCACTC 61.304 60.000 18.76 1.15 46.35 3.51
85 86 5.886960 AGGCACTCAAAATACTTGTCATC 57.113 39.130 0.00 0.00 0.00 2.92
86 87 5.316167 AGGCACTCAAAATACTTGTCATCA 58.684 37.500 0.00 0.00 0.00 3.07
87 88 5.769662 AGGCACTCAAAATACTTGTCATCAA 59.230 36.000 0.00 0.00 0.00 2.57
88 89 6.265196 AGGCACTCAAAATACTTGTCATCAAA 59.735 34.615 0.00 0.00 32.87 2.69
89 90 6.922957 GGCACTCAAAATACTTGTCATCAAAA 59.077 34.615 0.00 0.00 32.87 2.44
90 91 7.599998 GGCACTCAAAATACTTGTCATCAAAAT 59.400 33.333 0.00 0.00 32.87 1.82
91 92 8.430063 GCACTCAAAATACTTGTCATCAAAATG 58.570 33.333 0.00 0.00 32.87 2.32
92 93 8.918658 CACTCAAAATACTTGTCATCAAAATGG 58.081 33.333 0.00 0.00 33.42 3.16
93 94 8.859090 ACTCAAAATACTTGTCATCAAAATGGA 58.141 29.630 0.00 0.00 33.42 3.41
94 95 9.865321 CTCAAAATACTTGTCATCAAAATGGAT 57.135 29.630 0.00 0.00 33.42 3.41
153 154 8.693542 GGATACATCCTCTTTTGTTCATTTTG 57.306 34.615 0.72 0.00 43.73 2.44
154 155 8.522830 GGATACATCCTCTTTTGTTCATTTTGA 58.477 33.333 0.72 0.00 43.73 2.69
156 157 9.865321 ATACATCCTCTTTTGTTCATTTTGATG 57.135 29.630 0.00 0.00 33.80 3.07
157 158 7.954835 ACATCCTCTTTTGTTCATTTTGATGA 58.045 30.769 0.00 0.00 32.39 2.92
158 159 7.869429 ACATCCTCTTTTGTTCATTTTGATGAC 59.131 33.333 0.00 0.00 32.39 3.06
159 160 7.345422 TCCTCTTTTGTTCATTTTGATGACA 57.655 32.000 0.00 0.00 0.00 3.58
160 161 7.780064 TCCTCTTTTGTTCATTTTGATGACAA 58.220 30.769 0.00 0.00 0.00 3.18
161 162 7.922278 TCCTCTTTTGTTCATTTTGATGACAAG 59.078 33.333 0.00 0.00 37.32 3.16
162 163 7.707893 CCTCTTTTGTTCATTTTGATGACAAGT 59.292 33.333 0.00 0.00 37.32 3.16
163 164 9.734620 CTCTTTTGTTCATTTTGATGACAAGTA 57.265 29.630 0.00 0.00 37.32 2.24
168 169 9.474920 TTGTTCATTTTGATGACAAGTATTTCC 57.525 29.630 0.00 0.00 37.32 3.13
169 170 8.637099 TGTTCATTTTGATGACAAGTATTTCCA 58.363 29.630 0.00 0.00 37.32 3.53
170 171 9.132521 GTTCATTTTGATGACAAGTATTTCCAG 57.867 33.333 0.00 0.00 37.32 3.86
171 172 8.634335 TCATTTTGATGACAAGTATTTCCAGA 57.366 30.769 0.00 0.00 37.32 3.86
172 173 8.514594 TCATTTTGATGACAAGTATTTCCAGAC 58.485 33.333 0.00 0.00 37.32 3.51
173 174 6.480524 TTTGATGACAAGTATTTCCAGACG 57.519 37.500 0.00 0.00 37.32 4.18
174 175 4.503910 TGATGACAAGTATTTCCAGACGG 58.496 43.478 0.00 0.00 0.00 4.79
175 176 4.221924 TGATGACAAGTATTTCCAGACGGA 59.778 41.667 0.00 0.00 40.60 4.69
176 177 4.188247 TGACAAGTATTTCCAGACGGAG 57.812 45.455 0.00 0.00 44.10 4.63
177 178 3.056107 TGACAAGTATTTCCAGACGGAGG 60.056 47.826 0.00 0.00 44.10 4.30
178 179 2.236395 ACAAGTATTTCCAGACGGAGGG 59.764 50.000 0.00 0.00 44.10 4.30
179 180 2.500098 CAAGTATTTCCAGACGGAGGGA 59.500 50.000 0.00 0.00 44.10 4.20
180 181 2.389715 AGTATTTCCAGACGGAGGGAG 58.610 52.381 0.00 0.00 44.10 4.30
181 182 2.108970 GTATTTCCAGACGGAGGGAGT 58.891 52.381 0.00 0.00 44.10 3.85
182 183 2.544844 ATTTCCAGACGGAGGGAGTA 57.455 50.000 0.00 0.00 44.10 2.59
183 184 1.553706 TTTCCAGACGGAGGGAGTAC 58.446 55.000 0.00 0.00 44.10 2.73
184 185 0.679002 TTCCAGACGGAGGGAGTACG 60.679 60.000 0.00 0.00 44.10 3.67
185 186 1.378250 CCAGACGGAGGGAGTACGT 60.378 63.158 0.00 0.00 44.35 3.57
186 187 0.107508 CCAGACGGAGGGAGTACGTA 60.108 60.000 0.00 0.00 41.40 3.57
187 188 1.012841 CAGACGGAGGGAGTACGTAC 58.987 60.000 18.10 18.10 41.40 3.67
188 189 0.908198 AGACGGAGGGAGTACGTACT 59.092 55.000 27.71 27.71 41.40 2.73
227 228 2.846206 ACAGGGAAGATTAGCCACATGA 59.154 45.455 0.00 0.00 0.00 3.07
228 229 3.209410 CAGGGAAGATTAGCCACATGAC 58.791 50.000 0.00 0.00 0.00 3.06
229 230 2.846206 AGGGAAGATTAGCCACATGACA 59.154 45.455 0.00 0.00 0.00 3.58
230 231 3.461085 AGGGAAGATTAGCCACATGACAT 59.539 43.478 0.00 0.00 0.00 3.06
231 232 3.567164 GGGAAGATTAGCCACATGACATG 59.433 47.826 14.02 14.02 0.00 3.21
300 301 2.632544 GCTTTACCAACCACGCCCC 61.633 63.158 0.00 0.00 0.00 5.80
303 304 2.700407 TTTACCAACCACGCCCCTGG 62.700 60.000 0.00 0.00 37.33 4.45
358 360 0.168128 AGCGAATTAAACTGGCACGC 59.832 50.000 6.73 6.73 43.84 5.34
374 381 0.461961 ACGCAGAGTGCTCCCTAATC 59.538 55.000 0.00 0.00 42.25 1.75
375 382 0.461548 CGCAGAGTGCTCCCTAATCA 59.538 55.000 0.00 0.00 42.25 2.57
376 383 1.804372 CGCAGAGTGCTCCCTAATCAC 60.804 57.143 0.00 0.00 42.25 3.06
377 384 1.804372 GCAGAGTGCTCCCTAATCACG 60.804 57.143 0.00 0.00 40.96 4.35
386 393 1.402968 TCCCTAATCACGTACGTCTGC 59.597 52.381 19.94 0.00 0.00 4.26
401 408 2.904866 TGCGTGCTGGAAACCACC 60.905 61.111 0.00 0.00 0.00 4.61
417 424 1.135527 CCACCGCTTCCAGAATACGTA 59.864 52.381 0.00 0.00 0.00 3.57
418 425 2.190981 CACCGCTTCCAGAATACGTAC 58.809 52.381 0.00 0.00 0.00 3.67
419 426 1.202222 ACCGCTTCCAGAATACGTACG 60.202 52.381 15.01 15.01 0.00 3.67
420 427 1.202222 CCGCTTCCAGAATACGTACGT 60.202 52.381 25.98 25.98 0.00 3.57
436 443 5.333513 ACGTACGTTCTGATGAGATTTCTC 58.666 41.667 16.72 0.46 43.15 2.87
450 457 5.061920 AGATTTCTCGGACAAGTGTAGAC 57.938 43.478 0.00 0.00 0.00 2.59
451 458 3.655276 TTTCTCGGACAAGTGTAGACC 57.345 47.619 0.00 0.00 0.00 3.85
468 475 4.555348 AGACCGATGAGATAAGTCGTTC 57.445 45.455 0.00 0.00 33.77 3.95
493 501 3.203161 TCTGTCTCGAGAATCACAACG 57.797 47.619 18.55 0.98 33.17 4.10
501 509 0.249699 AGAATCACAACGCCACGTCA 60.250 50.000 0.00 0.00 39.99 4.35
502 510 0.110823 GAATCACAACGCCACGTCAC 60.111 55.000 0.00 0.00 39.99 3.67
503 511 0.531974 AATCACAACGCCACGTCACT 60.532 50.000 0.00 0.00 39.99 3.41
504 512 0.944311 ATCACAACGCCACGTCACTC 60.944 55.000 0.00 0.00 39.99 3.51
522 530 1.137872 CTCACTCATCTCTTTCCCCCG 59.862 57.143 0.00 0.00 0.00 5.73
540 548 0.876342 CGAGCCGGCCAAGTAATCTC 60.876 60.000 26.15 9.86 0.00 2.75
579 591 2.357034 CGACACACGTCCCCCAAG 60.357 66.667 0.00 0.00 39.11 3.61
580 592 2.668550 GACACACGTCCCCCAAGC 60.669 66.667 0.00 0.00 36.02 4.01
581 593 4.265056 ACACACGTCCCCCAAGCC 62.265 66.667 0.00 0.00 0.00 4.35
593 611 1.595093 CCCAAGCCGGTCAAACCATC 61.595 60.000 1.90 0.00 38.47 3.51
676 702 2.542178 GGGGAAAAACATGAAAACGTGC 59.458 45.455 0.00 0.00 0.00 5.34
684 710 4.503741 ACATGAAAACGTGCAGCTAAAT 57.496 36.364 0.00 0.00 0.00 1.40
700 726 1.148310 AAATGACTCGTTCCACAGCG 58.852 50.000 0.00 0.00 0.00 5.18
855 899 3.982241 AAGCACAAGCCAAGCGCC 61.982 61.111 2.29 0.00 43.56 6.53
965 1048 2.744202 CAAGGGATCTCGTTTGGTTGAG 59.256 50.000 0.00 0.00 0.00 3.02
1007 1093 2.516930 GCCGGTGACCATGATGGG 60.517 66.667 17.04 0.00 43.37 4.00
1366 1458 4.101585 TGGGTAGCTACTAGTACTAGCGAA 59.898 45.833 26.54 13.35 41.40 4.70
1368 1460 5.053145 GGTAGCTACTAGTACTAGCGAACA 58.947 45.833 26.54 9.40 41.40 3.18
1388 1485 5.241403 ACATGGTAATTCTGAACTGTCCA 57.759 39.130 0.00 0.40 0.00 4.02
1466 1568 7.790027 ACTCTCATGTAAATCAGATTAGCTGT 58.210 34.615 0.00 0.00 45.14 4.40
1572 1674 3.750371 TGTGGATTGTTCGGTTCTTCAT 58.250 40.909 0.00 0.00 0.00 2.57
1595 1697 5.989551 AATTTGTTTCCATTGACTTGTGC 57.010 34.783 0.00 0.00 0.00 4.57
1657 1773 3.251479 TCTGATCAGTGCACCATGTAC 57.749 47.619 21.92 5.89 32.95 2.90
1712 1829 6.471519 GTGAAATCTTGCAACAGATCAATAGC 59.528 38.462 0.00 0.00 31.87 2.97
1748 1869 7.564793 TCTGCTGTATTAAGGAGCTGAAATAA 58.435 34.615 0.00 0.00 37.63 1.40
1847 1970 5.809562 CAGTCACTTGTACTTCTGGATCATC 59.190 44.000 0.00 0.00 0.00 2.92
1947 2074 6.305693 ACTGGAAATTAATAAGAGCATCGC 57.694 37.500 0.00 0.00 42.67 4.58
1948 2075 5.050091 ACTGGAAATTAATAAGAGCATCGCG 60.050 40.000 0.00 0.00 42.67 5.87
1955 2082 8.709386 AATTAATAAGAGCATCGCGATAAGAT 57.291 30.769 23.22 9.38 42.67 2.40
1962 2089 5.747675 AGAGCATCGCGATAAGATATTCATG 59.252 40.000 23.22 7.46 42.67 3.07
1986 2116 7.109501 TGATTTCAATCATAAAGGGACGAAGA 58.890 34.615 0.00 0.00 40.32 2.87
1988 2118 4.430007 TCAATCATAAAGGGACGAAGACG 58.570 43.478 0.00 0.00 45.75 4.18
1992 2122 3.119245 TCATAAAGGGACGAAGACGGAAG 60.119 47.826 0.00 0.00 44.46 3.46
2022 2157 9.010029 AGAAATAAATGTGACGTTACCTGAATT 57.990 29.630 8.11 0.00 0.00 2.17
2041 2176 0.968405 TGTGGGCATTTTCTGAAGGC 59.032 50.000 0.00 0.00 0.00 4.35
2087 2226 9.023962 AGCCATGACAGAATCAAAATAAACTTA 57.976 29.630 0.00 0.00 41.93 2.24
2119 2258 3.390135 TCAGAGTCGTTGTGAACCAATC 58.610 45.455 0.00 0.00 35.02 2.67
2136 2279 3.508012 CCAATCGGTACACAAATTTCCCA 59.492 43.478 0.00 0.00 0.00 4.37
2155 2301 4.462483 TCCCATTCAAATTGAAGTGGCTAC 59.538 41.667 21.24 0.00 40.05 3.58
2157 2303 3.552604 TTCAAATTGAAGTGGCTACGC 57.447 42.857 4.03 0.00 31.83 4.42
2158 2304 2.778299 TCAAATTGAAGTGGCTACGCT 58.222 42.857 0.00 0.00 39.64 5.07
2238 2389 8.237267 GGAACTTTATTGACATCCACAAAGTAG 58.763 37.037 0.00 0.00 35.71 2.57
2282 2433 1.779569 AACGTTGTTGCTAGTCCGAG 58.220 50.000 0.00 0.00 0.00 4.63
2315 2466 1.225855 TCTGCACATTCCACAACGAC 58.774 50.000 0.00 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.492673 TCTAGAATATGTGTGTTTTGACCATC 57.507 34.615 0.00 0.00 0.00 3.51
3 4 8.999431 TCTTTCTAGAATATGTGTGTTTTGACC 58.001 33.333 5.89 0.00 0.00 4.02
8 9 8.887717 GCATCTCTTTCTAGAATATGTGTGTTT 58.112 33.333 5.89 0.00 31.29 2.83
9 10 8.263640 AGCATCTCTTTCTAGAATATGTGTGTT 58.736 33.333 5.89 0.00 31.29 3.32
10 11 7.790027 AGCATCTCTTTCTAGAATATGTGTGT 58.210 34.615 5.89 0.00 31.29 3.72
11 12 9.755804 TTAGCATCTCTTTCTAGAATATGTGTG 57.244 33.333 5.89 3.41 31.29 3.82
12 13 9.757227 GTTAGCATCTCTTTCTAGAATATGTGT 57.243 33.333 5.89 3.86 31.29 3.72
13 14 9.755804 TGTTAGCATCTCTTTCTAGAATATGTG 57.244 33.333 5.89 3.89 31.29 3.21
14 15 9.979578 CTGTTAGCATCTCTTTCTAGAATATGT 57.020 33.333 5.89 3.20 31.29 2.29
15 16 8.924691 GCTGTTAGCATCTCTTTCTAGAATATG 58.075 37.037 5.89 9.11 41.89 1.78
16 17 8.869109 AGCTGTTAGCATCTCTTTCTAGAATAT 58.131 33.333 5.89 0.00 45.56 1.28
17 18 8.243961 AGCTGTTAGCATCTCTTTCTAGAATA 57.756 34.615 5.89 0.00 45.56 1.75
18 19 7.123355 AGCTGTTAGCATCTCTTTCTAGAAT 57.877 36.000 5.89 0.00 45.56 2.40
19 20 6.537453 AGCTGTTAGCATCTCTTTCTAGAA 57.463 37.500 0.00 0.00 45.56 2.10
20 21 6.336566 CAAGCTGTTAGCATCTCTTTCTAGA 58.663 40.000 3.43 0.00 45.56 2.43
21 22 5.006552 GCAAGCTGTTAGCATCTCTTTCTAG 59.993 44.000 3.43 0.00 45.56 2.43
22 23 4.872691 GCAAGCTGTTAGCATCTCTTTCTA 59.127 41.667 3.43 0.00 45.56 2.10
23 24 3.688673 GCAAGCTGTTAGCATCTCTTTCT 59.311 43.478 3.43 0.00 45.56 2.52
24 25 3.438087 TGCAAGCTGTTAGCATCTCTTTC 59.562 43.478 3.43 0.00 45.56 2.62
25 26 3.415212 TGCAAGCTGTTAGCATCTCTTT 58.585 40.909 3.43 0.00 45.56 2.52
26 27 3.008330 CTGCAAGCTGTTAGCATCTCTT 58.992 45.455 3.43 0.00 45.56 2.85
27 28 2.630158 CTGCAAGCTGTTAGCATCTCT 58.370 47.619 3.43 0.00 45.56 3.10
28 29 1.669779 CCTGCAAGCTGTTAGCATCTC 59.330 52.381 3.43 0.00 45.56 2.75
29 30 1.280133 TCCTGCAAGCTGTTAGCATCT 59.720 47.619 3.43 0.00 45.56 2.90
30 31 1.399791 GTCCTGCAAGCTGTTAGCATC 59.600 52.381 3.43 0.00 45.56 3.91
31 32 1.004044 AGTCCTGCAAGCTGTTAGCAT 59.996 47.619 3.43 0.00 45.56 3.79
32 33 0.397941 AGTCCTGCAAGCTGTTAGCA 59.602 50.000 3.43 0.00 45.56 3.49
33 34 0.801251 CAGTCCTGCAAGCTGTTAGC 59.199 55.000 0.00 0.00 42.84 3.09
34 35 2.072298 GACAGTCCTGCAAGCTGTTAG 58.928 52.381 15.56 0.00 42.71 2.34
35 36 1.694150 AGACAGTCCTGCAAGCTGTTA 59.306 47.619 15.56 0.00 42.71 2.41
36 37 0.471617 AGACAGTCCTGCAAGCTGTT 59.528 50.000 15.56 6.45 42.71 3.16
37 38 0.034616 GAGACAGTCCTGCAAGCTGT 59.965 55.000 14.70 14.70 44.97 4.40
38 39 0.673022 GGAGACAGTCCTGCAAGCTG 60.673 60.000 9.43 9.43 42.99 4.24
39 40 1.676384 GGAGACAGTCCTGCAAGCT 59.324 57.895 0.00 0.00 42.99 3.74
40 41 1.739562 CGGAGACAGTCCTGCAAGC 60.740 63.158 0.00 0.00 44.35 4.01
41 42 0.888619 TACGGAGACAGTCCTGCAAG 59.111 55.000 0.00 0.00 44.35 4.01
42 43 0.601558 GTACGGAGACAGTCCTGCAA 59.398 55.000 0.00 0.00 44.35 4.08
43 44 1.583495 CGTACGGAGACAGTCCTGCA 61.583 60.000 7.57 0.00 44.35 4.41
44 45 1.136984 CGTACGGAGACAGTCCTGC 59.863 63.158 7.57 0.00 44.35 4.85
45 46 0.727970 CTCGTACGGAGACAGTCCTG 59.272 60.000 16.52 0.00 46.23 3.86
46 47 0.392729 CCTCGTACGGAGACAGTCCT 60.393 60.000 16.52 0.00 46.23 3.85
47 48 1.991099 GCCTCGTACGGAGACAGTCC 61.991 65.000 16.52 0.00 46.23 3.85
48 49 1.303799 TGCCTCGTACGGAGACAGTC 61.304 60.000 16.52 0.00 46.23 3.51
49 50 1.303074 TGCCTCGTACGGAGACAGT 60.303 57.895 16.52 0.00 46.23 3.55
50 51 1.136984 GTGCCTCGTACGGAGACAG 59.863 63.158 16.52 4.60 46.23 3.51
51 52 1.303074 AGTGCCTCGTACGGAGACA 60.303 57.895 16.52 7.47 46.23 3.41
52 53 1.303799 TGAGTGCCTCGTACGGAGAC 61.304 60.000 16.52 7.41 46.23 3.36
53 54 0.607217 TTGAGTGCCTCGTACGGAGA 60.607 55.000 16.52 0.00 46.23 3.71
54 55 0.242825 TTTGAGTGCCTCGTACGGAG 59.757 55.000 16.52 11.17 42.75 4.63
55 56 0.675083 TTTTGAGTGCCTCGTACGGA 59.325 50.000 16.52 1.19 32.35 4.69
56 57 1.722011 ATTTTGAGTGCCTCGTACGG 58.278 50.000 16.52 6.09 32.35 4.02
57 58 3.508762 AGTATTTTGAGTGCCTCGTACG 58.491 45.455 9.53 9.53 32.35 3.67
58 59 4.689345 ACAAGTATTTTGAGTGCCTCGTAC 59.311 41.667 0.00 0.00 32.35 3.67
59 60 4.890088 ACAAGTATTTTGAGTGCCTCGTA 58.110 39.130 0.00 0.00 32.35 3.43
60 61 3.740115 ACAAGTATTTTGAGTGCCTCGT 58.260 40.909 0.00 0.00 32.35 4.18
61 62 3.745975 TGACAAGTATTTTGAGTGCCTCG 59.254 43.478 0.00 0.00 32.35 4.63
62 63 5.412594 TGATGACAAGTATTTTGAGTGCCTC 59.587 40.000 0.00 0.00 0.00 4.70
63 64 5.316167 TGATGACAAGTATTTTGAGTGCCT 58.684 37.500 0.00 0.00 0.00 4.75
64 65 5.627499 TGATGACAAGTATTTTGAGTGCC 57.373 39.130 0.00 0.00 0.00 5.01
65 66 7.928908 TTTTGATGACAAGTATTTTGAGTGC 57.071 32.000 0.00 0.00 37.32 4.40
66 67 8.918658 CCATTTTGATGACAAGTATTTTGAGTG 58.081 33.333 0.00 0.00 37.32 3.51
67 68 8.859090 TCCATTTTGATGACAAGTATTTTGAGT 58.141 29.630 0.00 0.00 37.32 3.41
68 69 9.865321 ATCCATTTTGATGACAAGTATTTTGAG 57.135 29.630 0.00 0.00 37.32 3.02
130 131 9.865321 CATCAAAATGAACAAAAGAGGATGTAT 57.135 29.630 0.00 0.00 34.61 2.29
131 132 9.076781 TCATCAAAATGAACAAAAGAGGATGTA 57.923 29.630 0.00 0.00 38.97 2.29
132 133 7.869429 GTCATCAAAATGAACAAAAGAGGATGT 59.131 33.333 0.00 0.00 43.42 3.06
133 134 7.868922 TGTCATCAAAATGAACAAAAGAGGATG 59.131 33.333 0.00 0.00 43.42 3.51
134 135 7.954835 TGTCATCAAAATGAACAAAAGAGGAT 58.045 30.769 0.00 0.00 43.42 3.24
135 136 7.345422 TGTCATCAAAATGAACAAAAGAGGA 57.655 32.000 0.00 0.00 43.42 3.71
136 137 7.707893 ACTTGTCATCAAAATGAACAAAAGAGG 59.292 33.333 0.00 0.00 43.42 3.69
137 138 8.638685 ACTTGTCATCAAAATGAACAAAAGAG 57.361 30.769 0.00 0.00 43.42 2.85
142 143 9.474920 GGAAATACTTGTCATCAAAATGAACAA 57.525 29.630 0.00 0.00 43.42 2.83
143 144 8.637099 TGGAAATACTTGTCATCAAAATGAACA 58.363 29.630 0.00 0.00 43.42 3.18
144 145 9.132521 CTGGAAATACTTGTCATCAAAATGAAC 57.867 33.333 0.00 0.00 43.42 3.18
145 146 9.076781 TCTGGAAATACTTGTCATCAAAATGAA 57.923 29.630 0.00 0.00 43.42 2.57
146 147 8.514594 GTCTGGAAATACTTGTCATCAAAATGA 58.485 33.333 0.00 0.00 39.63 2.57
147 148 7.482743 CGTCTGGAAATACTTGTCATCAAAATG 59.517 37.037 0.00 0.00 32.87 2.32
148 149 7.362056 CCGTCTGGAAATACTTGTCATCAAAAT 60.362 37.037 0.00 0.00 37.49 1.82
149 150 6.072728 CCGTCTGGAAATACTTGTCATCAAAA 60.073 38.462 0.00 0.00 37.49 2.44
150 151 5.411361 CCGTCTGGAAATACTTGTCATCAAA 59.589 40.000 0.00 0.00 37.49 2.69
151 152 4.935205 CCGTCTGGAAATACTTGTCATCAA 59.065 41.667 0.00 0.00 37.49 2.57
152 153 4.221924 TCCGTCTGGAAATACTTGTCATCA 59.778 41.667 0.00 0.00 42.85 3.07
153 154 4.755411 TCCGTCTGGAAATACTTGTCATC 58.245 43.478 0.00 0.00 42.85 2.92
154 155 4.383118 CCTCCGTCTGGAAATACTTGTCAT 60.383 45.833 0.00 0.00 45.87 3.06
155 156 3.056107 CCTCCGTCTGGAAATACTTGTCA 60.056 47.826 0.00 0.00 45.87 3.58
156 157 3.522553 CCTCCGTCTGGAAATACTTGTC 58.477 50.000 0.00 0.00 45.87 3.18
157 158 2.236395 CCCTCCGTCTGGAAATACTTGT 59.764 50.000 0.00 0.00 45.87 3.16
158 159 2.500098 TCCCTCCGTCTGGAAATACTTG 59.500 50.000 0.00 0.00 45.87 3.16
159 160 2.766828 CTCCCTCCGTCTGGAAATACTT 59.233 50.000 0.00 0.00 45.87 2.24
160 161 2.292323 ACTCCCTCCGTCTGGAAATACT 60.292 50.000 0.00 0.00 45.87 2.12
161 162 2.108970 ACTCCCTCCGTCTGGAAATAC 58.891 52.381 0.00 0.00 45.87 1.89
162 163 2.544844 ACTCCCTCCGTCTGGAAATA 57.455 50.000 0.00 0.00 45.87 1.40
163 164 2.108970 GTACTCCCTCCGTCTGGAAAT 58.891 52.381 0.00 0.00 45.87 2.17
164 165 1.553706 GTACTCCCTCCGTCTGGAAA 58.446 55.000 0.00 0.00 45.87 3.13
165 166 0.679002 CGTACTCCCTCCGTCTGGAA 60.679 60.000 0.00 0.00 45.87 3.53
166 167 1.077930 CGTACTCCCTCCGTCTGGA 60.078 63.158 0.00 0.00 43.88 3.86
167 168 0.107508 TACGTACTCCCTCCGTCTGG 60.108 60.000 0.00 0.00 36.12 3.86
168 169 1.012841 GTACGTACTCCCTCCGTCTG 58.987 60.000 18.47 0.00 36.12 3.51
169 170 0.908198 AGTACGTACTCCCTCCGTCT 59.092 55.000 22.45 0.00 36.12 4.18
170 171 1.294857 GAGTACGTACTCCCTCCGTC 58.705 60.000 35.45 15.99 45.33 4.79
171 172 3.467776 GAGTACGTACTCCCTCCGT 57.532 57.895 35.45 11.53 45.33 4.69
179 180 5.285651 CGCTAAGTAGTAGGAGTACGTACT 58.714 45.833 27.71 27.71 45.54 2.73
180 181 4.084797 GCGCTAAGTAGTAGGAGTACGTAC 60.085 50.000 18.10 18.10 37.56 3.67
181 182 4.051922 GCGCTAAGTAGTAGGAGTACGTA 58.948 47.826 0.00 0.00 33.97 3.57
182 183 2.869192 GCGCTAAGTAGTAGGAGTACGT 59.131 50.000 0.00 0.00 33.97 3.57
183 184 2.097007 CGCGCTAAGTAGTAGGAGTACG 60.097 54.545 5.56 0.00 33.97 3.67
184 185 2.869192 ACGCGCTAAGTAGTAGGAGTAC 59.131 50.000 5.73 0.00 0.00 2.73
185 186 3.185246 ACGCGCTAAGTAGTAGGAGTA 57.815 47.619 5.73 0.00 0.00 2.59
186 187 2.035530 ACGCGCTAAGTAGTAGGAGT 57.964 50.000 5.73 0.00 0.00 3.85
187 188 2.868583 TGTACGCGCTAAGTAGTAGGAG 59.131 50.000 5.73 0.00 0.00 3.69
188 189 2.868583 CTGTACGCGCTAAGTAGTAGGA 59.131 50.000 5.73 0.00 0.00 2.94
189 190 2.032204 CCTGTACGCGCTAAGTAGTAGG 60.032 54.545 5.73 7.66 0.00 3.18
227 228 1.346395 TCGGTTTGACCAGCTACATGT 59.654 47.619 2.69 2.69 38.47 3.21
228 229 2.093306 TCGGTTTGACCAGCTACATG 57.907 50.000 0.00 0.00 38.47 3.21
229 230 2.301870 TCTTCGGTTTGACCAGCTACAT 59.698 45.455 0.00 0.00 38.47 2.29
230 231 1.689813 TCTTCGGTTTGACCAGCTACA 59.310 47.619 0.00 0.00 38.47 2.74
231 232 2.450609 TCTTCGGTTTGACCAGCTAC 57.549 50.000 0.00 0.00 38.47 3.58
300 301 6.144078 GTTATTAATTAACCACAGGGCCAG 57.856 41.667 6.18 0.00 37.90 4.85
358 360 1.478510 ACGTGATTAGGGAGCACTCTG 59.521 52.381 0.00 0.00 42.43 3.35
401 408 2.184385 ACGTACGTATTCTGGAAGCG 57.816 50.000 21.41 0.00 0.00 4.68
417 424 3.444034 TCCGAGAAATCTCATCAGAACGT 59.556 43.478 10.79 0.00 43.00 3.99
418 425 3.794028 GTCCGAGAAATCTCATCAGAACG 59.206 47.826 10.79 0.00 43.00 3.95
419 426 4.748892 TGTCCGAGAAATCTCATCAGAAC 58.251 43.478 10.79 0.73 43.00 3.01
420 427 5.047021 ACTTGTCCGAGAAATCTCATCAGAA 60.047 40.000 10.79 0.00 43.00 3.02
436 443 1.471287 TCATCGGTCTACACTTGTCCG 59.529 52.381 2.37 2.37 42.12 4.79
450 457 3.315470 TGGAGAACGACTTATCTCATCGG 59.685 47.826 5.28 0.00 43.10 4.18
451 458 4.553756 TGGAGAACGACTTATCTCATCG 57.446 45.455 5.28 0.00 43.10 3.84
468 475 3.379688 TGTGATTCTCGAGACAGATGGAG 59.620 47.826 16.36 0.00 0.00 3.86
493 501 0.244994 AGATGAGTGAGTGACGTGGC 59.755 55.000 0.00 0.00 0.00 5.01
501 509 2.192263 GGGGGAAAGAGATGAGTGAGT 58.808 52.381 0.00 0.00 0.00 3.41
502 510 1.137872 CGGGGGAAAGAGATGAGTGAG 59.862 57.143 0.00 0.00 0.00 3.51
503 511 1.195115 CGGGGGAAAGAGATGAGTGA 58.805 55.000 0.00 0.00 0.00 3.41
504 512 1.137872 CTCGGGGGAAAGAGATGAGTG 59.862 57.143 0.00 0.00 36.65 3.51
522 530 0.178068 TGAGATTACTTGGCCGGCTC 59.822 55.000 28.56 17.27 0.00 4.70
540 548 1.301244 ACTCGTGTGAAGGCTGCTG 60.301 57.895 0.00 0.00 0.00 4.41
578 590 2.355115 GGGATGGTTTGACCGGCT 59.645 61.111 0.00 0.00 42.58 5.52
579 591 2.034999 TGGGATGGTTTGACCGGC 59.965 61.111 0.00 0.00 42.58 6.13
580 592 2.046285 GCTGGGATGGTTTGACCGG 61.046 63.158 0.00 0.00 42.58 5.28
581 593 2.398554 CGCTGGGATGGTTTGACCG 61.399 63.158 0.00 0.00 42.58 4.79
593 611 4.183686 CATCTTTGCGCCGCTGGG 62.184 66.667 11.67 0.00 0.00 4.45
664 690 4.321745 GTCATTTAGCTGCACGTTTTCATG 59.678 41.667 1.02 0.00 0.00 3.07
676 702 3.325870 TGTGGAACGAGTCATTTAGCTG 58.674 45.455 0.00 0.00 42.39 4.24
684 710 2.338620 CCGCTGTGGAACGAGTCA 59.661 61.111 0.00 0.00 42.39 3.41
755 798 0.531090 ACGCAAGCGGTGAAGTGTTA 60.531 50.000 19.30 0.00 44.69 2.41
887 932 0.533755 CGATCTGGATGGTGGCCTTC 60.534 60.000 3.32 0.00 0.00 3.46
965 1048 1.341531 AGGGGTCGATCGATCAATCAC 59.658 52.381 28.32 13.12 0.00 3.06
1000 1083 3.564218 GAGCGCCTCCCCCATCAT 61.564 66.667 2.29 0.00 0.00 2.45
1236 1322 1.130613 CGAAAACAGCGAAGGCGAG 59.869 57.895 0.00 0.00 46.35 5.03
1366 1458 5.241403 TGGACAGTTCAGAATTACCATGT 57.759 39.130 0.00 0.00 0.00 3.21
1368 1460 4.324563 CCCTGGACAGTTCAGAATTACCAT 60.325 45.833 10.87 0.00 34.36 3.55
1388 1485 3.566742 GTCAAACCACGATAACAAACCCT 59.433 43.478 0.00 0.00 0.00 4.34
1439 1536 9.755804 CAGCTAATCTGATTTACATGAGAGTTA 57.244 33.333 8.38 0.00 45.72 2.24
1466 1568 6.000246 TCAATGAACATATCTACAAGGCCA 58.000 37.500 5.01 0.00 0.00 5.36
1680 1796 7.509141 TCTGTTGCAAGATTTCACTTGAATA 57.491 32.000 0.00 2.82 46.85 1.75
1681 1797 6.395426 TCTGTTGCAAGATTTCACTTGAAT 57.605 33.333 0.00 0.00 46.85 2.57
1748 1869 6.713450 ACACTGTAACCCGATCAATAAAACTT 59.287 34.615 0.00 0.00 0.00 2.66
1847 1970 3.963374 TGGTGATGGATGAGGTTAGAGAG 59.037 47.826 0.00 0.00 0.00 3.20
1962 2089 7.410485 GTCTTCGTCCCTTTATGATTGAAATC 58.590 38.462 0.00 0.00 35.97 2.17
1982 2112 7.746475 CACATTTATTTCTGAACTTCCGTCTTC 59.254 37.037 0.00 0.00 0.00 2.87
1986 2116 6.347402 CGTCACATTTATTTCTGAACTTCCGT 60.347 38.462 0.00 0.00 0.00 4.69
1988 2118 6.899114 ACGTCACATTTATTTCTGAACTTCC 58.101 36.000 0.00 0.00 0.00 3.46
1992 2122 7.744715 CAGGTAACGTCACATTTATTTCTGAAC 59.255 37.037 0.00 0.00 46.39 3.18
2006 2141 2.482721 CCCACAATTCAGGTAACGTCAC 59.517 50.000 0.00 0.00 46.39 3.67
2022 2157 0.968405 GCCTTCAGAAAATGCCCACA 59.032 50.000 0.00 0.00 0.00 4.17
2041 2176 3.008330 CTCCCATTTGTCTCTGCTTCTG 58.992 50.000 0.00 0.00 0.00 3.02
2087 2226 6.264067 TCACAACGACTCTGATATCATCTGAT 59.736 38.462 5.72 0.00 36.78 2.90
2119 2258 4.775058 TGAATGGGAAATTTGTGTACCG 57.225 40.909 0.00 0.00 0.00 4.02
2125 2268 7.229106 CCACTTCAATTTGAATGGGAAATTTGT 59.771 33.333 21.06 8.90 35.59 2.83
2155 2301 0.379669 CAGCAGATTTGGGCTTAGCG 59.620 55.000 0.00 0.00 38.56 4.26
2157 2303 2.996631 AGTCAGCAGATTTGGGCTTAG 58.003 47.619 0.00 0.00 38.56 2.18
2158 2304 3.439857 AAGTCAGCAGATTTGGGCTTA 57.560 42.857 0.00 0.00 38.56 3.09
2163 2309 2.350522 AGCGTAAGTCAGCAGATTTGG 58.649 47.619 0.00 0.00 41.68 3.28
2238 2389 4.096382 TGTTTCTTTTGCAGAGTCAGGTTC 59.904 41.667 0.00 0.00 31.12 3.62
2273 2424 3.380004 AGCAATCTCTTGACTCGGACTAG 59.620 47.826 0.00 0.00 34.04 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.