Multiple sequence alignment - TraesCS6A01G322700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G322700 chr6A 100.000 3695 0 0 1 3695 556559797 556556103 0.000000e+00 6824.0
1 TraesCS6A01G322700 chr6A 99.545 220 1 0 1 220 60391566 60391347 5.750000e-108 401.0
2 TraesCS6A01G322700 chr6A 99.091 220 2 0 1 220 564977725 564977944 2.670000e-106 396.0
3 TraesCS6A01G322700 chr6B 92.325 3127 167 27 622 3695 619032988 619029882 0.000000e+00 4377.0
4 TraesCS6A01G322700 chr6B 99.545 220 1 0 1 220 707616307 707616088 5.750000e-108 401.0
5 TraesCS6A01G322700 chr6D 91.346 3097 172 39 616 3635 411674421 411671344 0.000000e+00 4146.0
6 TraesCS6A01G322700 chr6D 91.837 49 2 2 1013 1060 142365658 142365705 2.380000e-07 67.6
7 TraesCS6A01G322700 chr7D 76.902 1472 272 46 1196 2631 628521875 628520436 0.000000e+00 773.0
8 TraesCS6A01G322700 chr7B 76.351 1480 290 34 1196 2643 730399515 730398064 0.000000e+00 739.0
9 TraesCS6A01G322700 chr7B 100.000 220 0 0 1 220 579512358 579512139 1.240000e-109 407.0
10 TraesCS6A01G322700 chr2D 90.984 488 32 1 1017 1492 332508963 332508476 0.000000e+00 647.0
11 TraesCS6A01G322700 chr7A 75.204 1472 294 45 1196 2628 724653177 724654616 6.730000e-177 630.0
12 TraesCS6A01G322700 chr4B 99.545 220 1 0 1 220 71244382 71244163 5.750000e-108 401.0
13 TraesCS6A01G322700 chr3B 99.545 220 1 0 1 220 273234829 273235048 5.750000e-108 401.0
14 TraesCS6A01G322700 chr5B 94.091 220 13 0 1 220 531352709 531352490 5.910000e-88 335.0
15 TraesCS6A01G322700 chr2B 93.607 219 14 0 1 219 798814503 798814721 9.890000e-86 327.0
16 TraesCS6A01G322700 chr4A 93.182 220 15 0 1 220 697974625 697974844 1.280000e-84 324.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G322700 chr6A 556556103 556559797 3694 True 6824 6824 100.000 1 3695 1 chr6A.!!$R2 3694
1 TraesCS6A01G322700 chr6B 619029882 619032988 3106 True 4377 4377 92.325 622 3695 1 chr6B.!!$R1 3073
2 TraesCS6A01G322700 chr6D 411671344 411674421 3077 True 4146 4146 91.346 616 3635 1 chr6D.!!$R1 3019
3 TraesCS6A01G322700 chr7D 628520436 628521875 1439 True 773 773 76.902 1196 2631 1 chr7D.!!$R1 1435
4 TraesCS6A01G322700 chr7B 730398064 730399515 1451 True 739 739 76.351 1196 2643 1 chr7B.!!$R2 1447
5 TraesCS6A01G322700 chr7A 724653177 724654616 1439 False 630 630 75.204 1196 2628 1 chr7A.!!$F1 1432

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
551 552 0.035458 AGGCGGAGGAAGTTCAACAG 59.965 55.0 5.01 0.27 0.00 3.16 F
612 613 0.100861 GCTAGCTACACCTCGTGTCC 59.899 60.0 7.70 0.00 43.92 4.02 F
2131 2211 0.539051 CTCTCCACACTGGGTCCATC 59.461 60.0 0.00 0.00 38.32 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1940 2020 1.685765 TCCACCAGGTCATCCTCGG 60.686 63.158 0.0 0.0 43.07 4.63 R
2610 2693 0.107017 ATCCAAGGCCGAACCATCTG 60.107 55.000 0.0 0.0 43.14 2.90 R
3443 3532 0.322008 CCCCTGTCAGCACTCCTTTC 60.322 60.000 0.0 0.0 0.00 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 6.402981 AGGAACTTTAACATCCCATACCTT 57.597 37.500 0.00 0.00 27.25 3.50
45 46 6.800890 AGGAACTTTAACATCCCATACCTTT 58.199 36.000 0.00 0.00 27.25 3.11
46 47 7.246027 AGGAACTTTAACATCCCATACCTTTT 58.754 34.615 0.00 0.00 27.25 2.27
47 48 7.733047 AGGAACTTTAACATCCCATACCTTTTT 59.267 33.333 0.00 0.00 27.25 1.94
48 49 7.817478 GGAACTTTAACATCCCATACCTTTTTG 59.183 37.037 0.00 0.00 0.00 2.44
49 50 7.239763 ACTTTAACATCCCATACCTTTTTGG 57.760 36.000 0.00 0.00 42.93 3.28
50 51 7.013834 ACTTTAACATCCCATACCTTTTTGGA 58.986 34.615 0.00 0.00 39.71 3.53
51 52 6.844097 TTAACATCCCATACCTTTTTGGAC 57.156 37.500 0.00 0.00 39.71 4.02
52 53 3.352648 ACATCCCATACCTTTTTGGACG 58.647 45.455 0.00 0.00 39.71 4.79
53 54 3.245122 ACATCCCATACCTTTTTGGACGT 60.245 43.478 0.00 0.00 39.71 4.34
54 55 3.512219 TCCCATACCTTTTTGGACGTT 57.488 42.857 0.00 0.00 39.71 3.99
55 56 3.150767 TCCCATACCTTTTTGGACGTTG 58.849 45.455 0.00 0.00 39.71 4.10
56 57 2.230266 CCCATACCTTTTTGGACGTTGG 59.770 50.000 0.00 0.00 39.71 3.77
57 58 3.150767 CCATACCTTTTTGGACGTTGGA 58.849 45.455 0.00 0.00 39.71 3.53
58 59 3.570550 CCATACCTTTTTGGACGTTGGAA 59.429 43.478 0.00 0.00 39.71 3.53
59 60 4.219725 CCATACCTTTTTGGACGTTGGAAT 59.780 41.667 0.00 0.00 39.71 3.01
60 61 5.416326 CCATACCTTTTTGGACGTTGGAATA 59.584 40.000 0.00 0.00 39.71 1.75
61 62 6.404293 CCATACCTTTTTGGACGTTGGAATAG 60.404 42.308 0.00 0.00 39.71 1.73
62 63 4.721132 ACCTTTTTGGACGTTGGAATAGA 58.279 39.130 0.00 0.00 39.71 1.98
63 64 5.134661 ACCTTTTTGGACGTTGGAATAGAA 58.865 37.500 0.00 0.00 39.71 2.10
64 65 5.009310 ACCTTTTTGGACGTTGGAATAGAAC 59.991 40.000 0.00 0.00 39.71 3.01
65 66 5.240844 CCTTTTTGGACGTTGGAATAGAACT 59.759 40.000 0.00 0.00 38.35 3.01
66 67 6.238925 CCTTTTTGGACGTTGGAATAGAACTT 60.239 38.462 0.00 0.00 38.35 2.66
67 68 5.682943 TTTGGACGTTGGAATAGAACTTG 57.317 39.130 0.00 0.00 0.00 3.16
68 69 4.610605 TGGACGTTGGAATAGAACTTGA 57.389 40.909 0.00 0.00 0.00 3.02
69 70 4.566004 TGGACGTTGGAATAGAACTTGAG 58.434 43.478 0.00 0.00 0.00 3.02
70 71 4.039973 TGGACGTTGGAATAGAACTTGAGT 59.960 41.667 0.00 0.00 0.00 3.41
71 72 4.995487 GGACGTTGGAATAGAACTTGAGTT 59.005 41.667 0.00 0.00 41.64 3.01
72 73 6.161381 GGACGTTGGAATAGAACTTGAGTTA 58.839 40.000 0.00 0.00 38.56 2.24
73 74 6.647895 GGACGTTGGAATAGAACTTGAGTTAA 59.352 38.462 0.00 0.00 38.56 2.01
74 75 7.333672 GGACGTTGGAATAGAACTTGAGTTAAT 59.666 37.037 0.00 0.00 38.56 1.40
75 76 9.362539 GACGTTGGAATAGAACTTGAGTTAATA 57.637 33.333 0.00 0.00 38.56 0.98
76 77 9.715121 ACGTTGGAATAGAACTTGAGTTAATAA 57.285 29.630 0.00 0.00 38.56 1.40
77 78 9.968743 CGTTGGAATAGAACTTGAGTTAATAAC 57.031 33.333 0.00 0.00 38.56 1.89
98 99 6.992063 AACATCAAGATACATTGACCTCAC 57.008 37.500 0.00 0.00 41.76 3.51
99 100 6.305272 ACATCAAGATACATTGACCTCACT 57.695 37.500 0.00 0.00 41.76 3.41
100 101 6.111382 ACATCAAGATACATTGACCTCACTG 58.889 40.000 0.00 0.00 41.76 3.66
101 102 5.745312 TCAAGATACATTGACCTCACTGT 57.255 39.130 4.01 4.01 41.62 3.55
102 103 6.850752 TCAAGATACATTGACCTCACTGTA 57.149 37.500 7.68 7.68 43.12 2.74
103 104 7.239763 TCAAGATACATTGACCTCACTGTAA 57.760 36.000 8.95 0.00 42.54 2.41
104 105 7.676004 TCAAGATACATTGACCTCACTGTAAA 58.324 34.615 8.95 0.00 42.54 2.01
105 106 8.321353 TCAAGATACATTGACCTCACTGTAAAT 58.679 33.333 8.95 0.00 42.54 1.40
106 107 9.599866 CAAGATACATTGACCTCACTGTAAATA 57.400 33.333 8.95 0.00 42.54 1.40
107 108 9.601217 AAGATACATTGACCTCACTGTAAATAC 57.399 33.333 8.95 3.60 42.54 1.89
108 109 8.204836 AGATACATTGACCTCACTGTAAATACC 58.795 37.037 8.95 0.13 42.54 2.73
109 110 5.497474 ACATTGACCTCACTGTAAATACCC 58.503 41.667 0.00 0.00 37.87 3.69
110 111 4.563140 TTGACCTCACTGTAAATACCCC 57.437 45.455 0.00 0.00 0.00 4.95
111 112 3.522759 TGACCTCACTGTAAATACCCCA 58.477 45.455 0.00 0.00 0.00 4.96
112 113 4.108570 TGACCTCACTGTAAATACCCCAT 58.891 43.478 0.00 0.00 0.00 4.00
113 114 4.538490 TGACCTCACTGTAAATACCCCATT 59.462 41.667 0.00 0.00 0.00 3.16
114 115 5.112129 ACCTCACTGTAAATACCCCATTC 57.888 43.478 0.00 0.00 0.00 2.67
115 116 4.788617 ACCTCACTGTAAATACCCCATTCT 59.211 41.667 0.00 0.00 0.00 2.40
116 117 5.253096 ACCTCACTGTAAATACCCCATTCTT 59.747 40.000 0.00 0.00 0.00 2.52
117 118 5.590259 CCTCACTGTAAATACCCCATTCTTG 59.410 44.000 0.00 0.00 0.00 3.02
118 119 5.505780 TCACTGTAAATACCCCATTCTTGG 58.494 41.667 0.00 0.00 43.23 3.61
119 120 5.014755 TCACTGTAAATACCCCATTCTTGGT 59.985 40.000 0.00 0.00 41.91 3.67
120 121 5.357032 CACTGTAAATACCCCATTCTTGGTC 59.643 44.000 0.00 0.00 41.91 4.02
121 122 5.014755 ACTGTAAATACCCCATTCTTGGTCA 59.985 40.000 0.00 0.00 41.91 4.02
122 123 5.893500 TGTAAATACCCCATTCTTGGTCAA 58.106 37.500 0.00 0.00 41.91 3.18
123 124 5.712917 TGTAAATACCCCATTCTTGGTCAAC 59.287 40.000 0.00 0.00 41.91 3.18
124 125 4.675063 AATACCCCATTCTTGGTCAACT 57.325 40.909 0.00 0.00 41.91 3.16
125 126 4.675063 ATACCCCATTCTTGGTCAACTT 57.325 40.909 0.00 0.00 41.91 2.66
126 127 2.876581 ACCCCATTCTTGGTCAACTTC 58.123 47.619 0.00 0.00 41.91 3.01
127 128 2.171003 CCCCATTCTTGGTCAACTTCC 58.829 52.381 0.00 0.00 41.91 3.46
128 129 2.490718 CCCCATTCTTGGTCAACTTCCA 60.491 50.000 0.00 0.00 41.91 3.53
129 130 2.821969 CCCATTCTTGGTCAACTTCCAG 59.178 50.000 0.00 0.00 41.91 3.86
130 131 2.229784 CCATTCTTGGTCAACTTCCAGC 59.770 50.000 0.00 0.00 38.30 4.85
131 132 1.593196 TTCTTGGTCAACTTCCAGCG 58.407 50.000 0.00 0.00 36.28 5.18
132 133 0.468226 TCTTGGTCAACTTCCAGCGT 59.532 50.000 0.00 0.00 36.28 5.07
133 134 1.689813 TCTTGGTCAACTTCCAGCGTA 59.310 47.619 0.00 0.00 36.28 4.42
134 135 2.103432 TCTTGGTCAACTTCCAGCGTAA 59.897 45.455 0.00 0.00 36.28 3.18
135 136 2.851263 TGGTCAACTTCCAGCGTAAT 57.149 45.000 0.00 0.00 0.00 1.89
136 137 3.965379 TGGTCAACTTCCAGCGTAATA 57.035 42.857 0.00 0.00 0.00 0.98
137 138 3.592059 TGGTCAACTTCCAGCGTAATAC 58.408 45.455 0.00 0.00 0.00 1.89
138 139 3.007074 TGGTCAACTTCCAGCGTAATACA 59.993 43.478 0.00 0.00 0.00 2.29
139 140 4.189231 GGTCAACTTCCAGCGTAATACAT 58.811 43.478 0.00 0.00 0.00 2.29
140 141 4.270325 GGTCAACTTCCAGCGTAATACATC 59.730 45.833 0.00 0.00 0.00 3.06
141 142 4.868171 GTCAACTTCCAGCGTAATACATCA 59.132 41.667 0.00 0.00 0.00 3.07
142 143 5.005779 GTCAACTTCCAGCGTAATACATCAG 59.994 44.000 0.00 0.00 0.00 2.90
143 144 4.060038 ACTTCCAGCGTAATACATCAGG 57.940 45.455 0.00 0.00 0.00 3.86
144 145 3.451178 ACTTCCAGCGTAATACATCAGGT 59.549 43.478 0.00 0.00 0.00 4.00
145 146 4.081087 ACTTCCAGCGTAATACATCAGGTT 60.081 41.667 0.00 0.00 0.00 3.50
146 147 3.792401 TCCAGCGTAATACATCAGGTTG 58.208 45.455 0.00 0.00 0.00 3.77
147 148 2.872245 CCAGCGTAATACATCAGGTTGG 59.128 50.000 0.00 0.00 0.00 3.77
148 149 3.531538 CAGCGTAATACATCAGGTTGGT 58.468 45.455 0.00 0.00 0.00 3.67
149 150 3.555956 CAGCGTAATACATCAGGTTGGTC 59.444 47.826 0.00 0.00 0.00 4.02
150 151 3.196901 AGCGTAATACATCAGGTTGGTCA 59.803 43.478 0.00 0.00 0.00 4.02
151 152 3.555956 GCGTAATACATCAGGTTGGTCAG 59.444 47.826 0.00 0.00 0.00 3.51
152 153 4.679639 GCGTAATACATCAGGTTGGTCAGA 60.680 45.833 0.00 0.00 0.00 3.27
153 154 5.043903 CGTAATACATCAGGTTGGTCAGAG 58.956 45.833 0.00 0.00 0.00 3.35
154 155 5.163550 CGTAATACATCAGGTTGGTCAGAGA 60.164 44.000 0.00 0.00 0.00 3.10
155 156 5.350504 AATACATCAGGTTGGTCAGAGAG 57.649 43.478 0.00 0.00 0.00 3.20
156 157 2.614259 ACATCAGGTTGGTCAGAGAGT 58.386 47.619 0.00 0.00 0.00 3.24
157 158 2.975489 ACATCAGGTTGGTCAGAGAGTT 59.025 45.455 0.00 0.00 0.00 3.01
158 159 3.244353 ACATCAGGTTGGTCAGAGAGTTG 60.244 47.826 0.00 0.00 0.00 3.16
159 160 1.694150 TCAGGTTGGTCAGAGAGTTGG 59.306 52.381 0.00 0.00 0.00 3.77
160 161 1.694150 CAGGTTGGTCAGAGAGTTGGA 59.306 52.381 0.00 0.00 0.00 3.53
161 162 1.694696 AGGTTGGTCAGAGAGTTGGAC 59.305 52.381 0.00 0.00 0.00 4.02
165 166 0.899019 GGTCAGAGAGTTGGACCTCC 59.101 60.000 0.00 0.00 45.99 4.30
166 167 1.633774 GTCAGAGAGTTGGACCTCCA 58.366 55.000 0.00 0.00 45.94 3.86
167 168 2.183679 GTCAGAGAGTTGGACCTCCAT 58.816 52.381 0.00 0.00 46.97 3.41
168 169 2.569404 GTCAGAGAGTTGGACCTCCATT 59.431 50.000 0.00 0.00 46.97 3.16
169 170 3.769844 GTCAGAGAGTTGGACCTCCATTA 59.230 47.826 0.00 0.00 46.97 1.90
170 171 4.026744 TCAGAGAGTTGGACCTCCATTAG 58.973 47.826 0.00 0.00 46.97 1.73
171 172 3.772025 CAGAGAGTTGGACCTCCATTAGT 59.228 47.826 0.00 0.00 46.97 2.24
172 173 4.027437 AGAGAGTTGGACCTCCATTAGTC 58.973 47.826 0.00 0.00 46.97 2.59
173 174 4.027437 GAGAGTTGGACCTCCATTAGTCT 58.973 47.826 3.82 3.82 46.97 3.24
174 175 4.027437 AGAGTTGGACCTCCATTAGTCTC 58.973 47.826 0.00 0.30 46.97 3.36
175 176 3.108376 AGTTGGACCTCCATTAGTCTCC 58.892 50.000 0.00 0.00 46.97 3.71
176 177 3.108376 GTTGGACCTCCATTAGTCTCCT 58.892 50.000 0.00 0.00 46.97 3.69
177 178 3.491766 TGGACCTCCATTAGTCTCCTT 57.508 47.619 0.00 0.00 42.01 3.36
178 179 4.620086 TGGACCTCCATTAGTCTCCTTA 57.380 45.455 0.00 0.00 42.01 2.69
179 180 4.287552 TGGACCTCCATTAGTCTCCTTAC 58.712 47.826 0.00 0.00 42.01 2.34
180 181 4.016479 TGGACCTCCATTAGTCTCCTTACT 60.016 45.833 0.00 0.00 42.01 2.24
181 182 5.195146 TGGACCTCCATTAGTCTCCTTACTA 59.805 44.000 0.00 0.00 42.01 1.82
182 183 6.134754 GGACCTCCATTAGTCTCCTTACTAA 58.865 44.000 0.00 0.00 43.98 2.24
183 184 6.040729 GGACCTCCATTAGTCTCCTTACTAAC 59.959 46.154 0.00 0.00 42.98 2.34
184 185 6.743788 ACCTCCATTAGTCTCCTTACTAACT 58.256 40.000 0.00 0.00 42.98 2.24
185 186 6.608002 ACCTCCATTAGTCTCCTTACTAACTG 59.392 42.308 0.00 0.00 42.98 3.16
186 187 6.041069 CCTCCATTAGTCTCCTTACTAACTGG 59.959 46.154 13.37 13.37 42.98 4.00
187 188 6.738635 TCCATTAGTCTCCTTACTAACTGGA 58.261 40.000 15.87 15.87 42.98 3.86
188 189 6.834451 TCCATTAGTCTCCTTACTAACTGGAG 59.166 42.308 15.87 0.00 42.98 3.86
189 190 6.461788 CCATTAGTCTCCTTACTAACTGGAGC 60.462 46.154 13.88 0.00 42.98 4.70
190 191 3.367321 AGTCTCCTTACTAACTGGAGCC 58.633 50.000 0.00 0.00 45.04 4.70
191 192 3.097614 GTCTCCTTACTAACTGGAGCCA 58.902 50.000 0.00 0.00 45.04 4.75
192 193 3.514309 GTCTCCTTACTAACTGGAGCCAA 59.486 47.826 0.00 0.00 45.04 4.52
193 194 4.020485 GTCTCCTTACTAACTGGAGCCAAA 60.020 45.833 0.00 0.00 45.04 3.28
194 195 4.020485 TCTCCTTACTAACTGGAGCCAAAC 60.020 45.833 0.00 0.00 45.04 2.93
195 196 3.008704 TCCTTACTAACTGGAGCCAAACC 59.991 47.826 0.00 0.00 0.00 3.27
196 197 3.009143 CCTTACTAACTGGAGCCAAACCT 59.991 47.826 0.00 0.00 0.00 3.50
197 198 2.861147 ACTAACTGGAGCCAAACCTC 57.139 50.000 0.00 0.00 0.00 3.85
202 203 4.097218 GGAGCCAAACCTCCCAAC 57.903 61.111 0.00 0.00 44.60 3.77
203 204 1.971695 GGAGCCAAACCTCCCAACG 60.972 63.158 0.00 0.00 44.60 4.10
204 205 1.072505 GAGCCAAACCTCCCAACGA 59.927 57.895 0.00 0.00 0.00 3.85
205 206 0.322546 GAGCCAAACCTCCCAACGAT 60.323 55.000 0.00 0.00 0.00 3.73
206 207 0.112412 AGCCAAACCTCCCAACGATT 59.888 50.000 0.00 0.00 0.00 3.34
207 208 0.243636 GCCAAACCTCCCAACGATTG 59.756 55.000 0.00 0.00 0.00 2.67
208 209 0.243636 CCAAACCTCCCAACGATTGC 59.756 55.000 0.00 0.00 0.00 3.56
209 210 0.243636 CAAACCTCCCAACGATTGCC 59.756 55.000 0.00 0.00 0.00 4.52
210 211 0.898326 AAACCTCCCAACGATTGCCC 60.898 55.000 0.00 0.00 0.00 5.36
211 212 2.075355 AACCTCCCAACGATTGCCCA 62.075 55.000 0.00 0.00 0.00 5.36
212 213 2.046285 CCTCCCAACGATTGCCCAC 61.046 63.158 0.00 0.00 0.00 4.61
213 214 1.002134 CTCCCAACGATTGCCCACT 60.002 57.895 0.00 0.00 0.00 4.00
214 215 0.251916 CTCCCAACGATTGCCCACTA 59.748 55.000 0.00 0.00 0.00 2.74
215 216 0.693622 TCCCAACGATTGCCCACTAA 59.306 50.000 0.00 0.00 0.00 2.24
216 217 0.808755 CCCAACGATTGCCCACTAAC 59.191 55.000 0.00 0.00 0.00 2.34
217 218 0.446222 CCAACGATTGCCCACTAACG 59.554 55.000 0.00 0.00 0.00 3.18
218 219 1.434555 CAACGATTGCCCACTAACGA 58.565 50.000 0.00 0.00 0.00 3.85
219 220 1.127951 CAACGATTGCCCACTAACGAC 59.872 52.381 0.00 0.00 0.00 4.34
220 221 0.606604 ACGATTGCCCACTAACGACT 59.393 50.000 0.00 0.00 0.00 4.18
221 222 1.820519 ACGATTGCCCACTAACGACTA 59.179 47.619 0.00 0.00 0.00 2.59
222 223 2.190981 CGATTGCCCACTAACGACTAC 58.809 52.381 0.00 0.00 0.00 2.73
223 224 2.190981 GATTGCCCACTAACGACTACG 58.809 52.381 0.00 0.00 45.75 3.51
237 238 3.111098 CGACTACGTAATAACCACCAGC 58.889 50.000 0.00 0.00 34.56 4.85
238 239 3.181493 CGACTACGTAATAACCACCAGCT 60.181 47.826 0.00 0.00 34.56 4.24
239 240 4.357996 GACTACGTAATAACCACCAGCTC 58.642 47.826 0.00 0.00 0.00 4.09
240 241 2.288961 ACGTAATAACCACCAGCTCG 57.711 50.000 0.00 0.00 0.00 5.03
241 242 1.820519 ACGTAATAACCACCAGCTCGA 59.179 47.619 0.00 0.00 0.00 4.04
242 243 2.429610 ACGTAATAACCACCAGCTCGAT 59.570 45.455 0.00 0.00 0.00 3.59
243 244 3.050619 CGTAATAACCACCAGCTCGATC 58.949 50.000 0.00 0.00 0.00 3.69
244 245 2.622064 AATAACCACCAGCTCGATCC 57.378 50.000 0.00 0.00 0.00 3.36
245 246 0.759346 ATAACCACCAGCTCGATCCC 59.241 55.000 0.00 0.00 0.00 3.85
246 247 0.616395 TAACCACCAGCTCGATCCCA 60.616 55.000 0.00 0.00 0.00 4.37
247 248 1.903877 AACCACCAGCTCGATCCCAG 61.904 60.000 0.00 0.00 0.00 4.45
248 249 2.362369 CCACCAGCTCGATCCCAGT 61.362 63.158 0.00 0.00 0.00 4.00
249 250 1.599047 CACCAGCTCGATCCCAGTT 59.401 57.895 0.00 0.00 0.00 3.16
250 251 0.460987 CACCAGCTCGATCCCAGTTC 60.461 60.000 0.00 0.00 0.00 3.01
251 252 1.144936 CCAGCTCGATCCCAGTTCC 59.855 63.158 0.00 0.00 0.00 3.62
252 253 1.144936 CAGCTCGATCCCAGTTCCC 59.855 63.158 0.00 0.00 0.00 3.97
253 254 1.306141 AGCTCGATCCCAGTTCCCA 60.306 57.895 0.00 0.00 0.00 4.37
254 255 0.909610 AGCTCGATCCCAGTTCCCAA 60.910 55.000 0.00 0.00 0.00 4.12
255 256 0.462759 GCTCGATCCCAGTTCCCAAG 60.463 60.000 0.00 0.00 0.00 3.61
256 257 0.179000 CTCGATCCCAGTTCCCAAGG 59.821 60.000 0.00 0.00 0.00 3.61
257 258 0.252513 TCGATCCCAGTTCCCAAGGA 60.253 55.000 0.00 0.00 0.00 3.36
258 259 0.618458 CGATCCCAGTTCCCAAGGAA 59.382 55.000 0.00 0.00 39.66 3.36
259 260 1.407437 CGATCCCAGTTCCCAAGGAAG 60.407 57.143 0.00 0.00 42.88 3.46
260 261 1.002857 ATCCCAGTTCCCAAGGAAGG 58.997 55.000 0.00 0.00 42.88 3.46
261 262 0.402861 TCCCAGTTCCCAAGGAAGGT 60.403 55.000 0.00 0.00 42.88 3.50
262 263 1.132332 TCCCAGTTCCCAAGGAAGGTA 60.132 52.381 0.00 0.00 42.88 3.08
263 264 1.708551 CCCAGTTCCCAAGGAAGGTAA 59.291 52.381 0.00 0.00 42.88 2.85
264 265 2.554564 CCCAGTTCCCAAGGAAGGTAAC 60.555 54.545 0.00 0.00 42.88 2.50
265 266 2.107552 CCAGTTCCCAAGGAAGGTAACA 59.892 50.000 0.00 0.00 42.88 2.41
266 267 3.435890 CCAGTTCCCAAGGAAGGTAACAA 60.436 47.826 0.00 0.00 42.88 2.83
267 268 4.407365 CAGTTCCCAAGGAAGGTAACAAT 58.593 43.478 0.00 0.00 42.88 2.71
268 269 4.459337 CAGTTCCCAAGGAAGGTAACAATC 59.541 45.833 0.00 0.00 42.88 2.67
269 270 4.354087 AGTTCCCAAGGAAGGTAACAATCT 59.646 41.667 0.00 0.00 42.88 2.40
270 271 5.077564 GTTCCCAAGGAAGGTAACAATCTT 58.922 41.667 0.00 0.00 42.88 2.40
271 272 4.662278 TCCCAAGGAAGGTAACAATCTTG 58.338 43.478 0.00 0.00 38.05 3.02
272 273 4.105697 TCCCAAGGAAGGTAACAATCTTGT 59.894 41.667 0.00 0.00 44.72 3.16
273 274 6.865722 TTCCCAAGGAAGGTAACAATCTTGTT 60.866 38.462 12.51 12.51 43.96 2.83
274 275 8.296728 TTCCCAAGGAAGGTAACAATCTTGTTT 61.297 37.037 13.06 0.00 41.46 2.83
299 300 9.973450 TTCAAAATTACAAAATACTTAGCTGCA 57.027 25.926 1.02 0.00 0.00 4.41
300 301 9.624697 TCAAAATTACAAAATACTTAGCTGCAG 57.375 29.630 10.11 10.11 0.00 4.41
301 302 8.375465 CAAAATTACAAAATACTTAGCTGCAGC 58.625 33.333 31.53 31.53 42.49 5.25
311 312 4.959446 GCTGCAGCTTGGAAGTTG 57.041 55.556 31.33 0.00 39.84 3.16
337 338 7.872163 AACTTTTGTTGTGTATATGCATGTG 57.128 32.000 10.16 0.00 41.77 3.21
338 339 6.980593 ACTTTTGTTGTGTATATGCATGTGT 58.019 32.000 10.16 0.00 0.00 3.72
339 340 6.862608 ACTTTTGTTGTGTATATGCATGTGTG 59.137 34.615 10.16 0.00 0.00 3.82
340 341 5.956068 TTGTTGTGTATATGCATGTGTGT 57.044 34.783 10.16 0.00 0.00 3.72
341 342 5.956068 TGTTGTGTATATGCATGTGTGTT 57.044 34.783 10.16 0.00 0.00 3.32
342 343 5.697826 TGTTGTGTATATGCATGTGTGTTG 58.302 37.500 10.16 0.00 0.00 3.33
343 344 4.354071 TGTGTATATGCATGTGTGTTGC 57.646 40.909 10.16 0.00 40.55 4.17
344 345 3.128415 TGTGTATATGCATGTGTGTTGCC 59.872 43.478 10.16 0.00 39.39 4.52
345 346 3.378112 GTGTATATGCATGTGTGTTGCCT 59.622 43.478 10.16 0.00 39.39 4.75
346 347 3.377798 TGTATATGCATGTGTGTTGCCTG 59.622 43.478 10.16 0.00 39.39 4.85
347 348 1.908344 TATGCATGTGTGTTGCCTGT 58.092 45.000 10.16 0.00 39.39 4.00
348 349 1.042229 ATGCATGTGTGTTGCCTGTT 58.958 45.000 0.00 0.00 39.39 3.16
349 350 0.822811 TGCATGTGTGTTGCCTGTTT 59.177 45.000 0.00 0.00 39.39 2.83
350 351 2.027385 TGCATGTGTGTTGCCTGTTTA 58.973 42.857 0.00 0.00 39.39 2.01
351 352 2.428530 TGCATGTGTGTTGCCTGTTTAA 59.571 40.909 0.00 0.00 39.39 1.52
352 353 3.118992 TGCATGTGTGTTGCCTGTTTAAA 60.119 39.130 0.00 0.00 39.39 1.52
353 354 3.245048 GCATGTGTGTTGCCTGTTTAAAC 59.755 43.478 11.54 11.54 33.95 2.01
354 355 3.512033 TGTGTGTTGCCTGTTTAAACC 57.488 42.857 15.59 1.26 0.00 3.27
355 356 2.826128 TGTGTGTTGCCTGTTTAAACCA 59.174 40.909 15.59 3.93 0.00 3.67
356 357 3.258372 TGTGTGTTGCCTGTTTAAACCAA 59.742 39.130 15.59 9.67 0.00 3.67
357 358 4.246458 GTGTGTTGCCTGTTTAAACCAAA 58.754 39.130 15.59 2.51 0.00 3.28
358 359 4.873259 GTGTGTTGCCTGTTTAAACCAAAT 59.127 37.500 15.59 0.00 0.00 2.32
359 360 6.043411 GTGTGTTGCCTGTTTAAACCAAATA 58.957 36.000 15.59 3.69 0.00 1.40
360 361 6.704050 GTGTGTTGCCTGTTTAAACCAAATAT 59.296 34.615 15.59 0.00 0.00 1.28
361 362 7.225734 GTGTGTTGCCTGTTTAAACCAAATATT 59.774 33.333 15.59 0.00 0.00 1.28
362 363 7.439655 TGTGTTGCCTGTTTAAACCAAATATTC 59.560 33.333 15.59 2.28 0.00 1.75
363 364 7.655732 GTGTTGCCTGTTTAAACCAAATATTCT 59.344 33.333 15.59 0.00 0.00 2.40
364 365 7.870445 TGTTGCCTGTTTAAACCAAATATTCTC 59.130 33.333 15.59 1.10 0.00 2.87
365 366 6.930731 TGCCTGTTTAAACCAAATATTCTCC 58.069 36.000 15.59 0.00 0.00 3.71
366 367 6.071051 TGCCTGTTTAAACCAAATATTCTCCC 60.071 38.462 15.59 0.00 0.00 4.30
367 368 6.629515 GCCTGTTTAAACCAAATATTCTCCCC 60.630 42.308 15.59 0.00 0.00 4.81
368 369 6.127168 CCTGTTTAAACCAAATATTCTCCCCC 60.127 42.308 15.59 0.00 0.00 5.40
369 370 6.323737 TGTTTAAACCAAATATTCTCCCCCA 58.676 36.000 15.59 0.00 0.00 4.96
370 371 6.787957 TGTTTAAACCAAATATTCTCCCCCAA 59.212 34.615 15.59 0.00 0.00 4.12
371 372 7.038658 TGTTTAAACCAAATATTCTCCCCCAAG 60.039 37.037 15.59 0.00 0.00 3.61
372 373 3.688049 ACCAAATATTCTCCCCCAAGG 57.312 47.619 0.00 0.00 0.00 3.61
391 392 7.679783 CCCAAGGGAATTTTTAGATTTTCTGT 58.320 34.615 0.00 0.00 37.50 3.41
392 393 7.819415 CCCAAGGGAATTTTTAGATTTTCTGTC 59.181 37.037 0.00 0.00 37.50 3.51
393 394 8.588472 CCAAGGGAATTTTTAGATTTTCTGTCT 58.412 33.333 0.00 0.00 0.00 3.41
394 395 9.631452 CAAGGGAATTTTTAGATTTTCTGTCTC 57.369 33.333 0.00 0.00 0.00 3.36
395 396 8.045176 AGGGAATTTTTAGATTTTCTGTCTCG 57.955 34.615 0.00 0.00 0.00 4.04
396 397 6.747739 GGGAATTTTTAGATTTTCTGTCTCGC 59.252 38.462 0.00 0.00 0.00 5.03
397 398 7.305474 GGAATTTTTAGATTTTCTGTCTCGCA 58.695 34.615 0.00 0.00 0.00 5.10
398 399 7.483059 GGAATTTTTAGATTTTCTGTCTCGCAG 59.517 37.037 0.00 0.00 46.34 5.18
399 400 4.928661 TTTAGATTTTCTGTCTCGCAGC 57.071 40.909 0.00 0.00 44.66 5.25
400 401 2.758736 AGATTTTCTGTCTCGCAGCT 57.241 45.000 0.00 0.00 44.66 4.24
401 402 3.051081 AGATTTTCTGTCTCGCAGCTT 57.949 42.857 0.00 0.00 44.66 3.74
402 403 4.193826 AGATTTTCTGTCTCGCAGCTTA 57.806 40.909 0.00 0.00 44.66 3.09
403 404 4.569943 AGATTTTCTGTCTCGCAGCTTAA 58.430 39.130 0.00 0.00 44.66 1.85
404 405 5.181748 AGATTTTCTGTCTCGCAGCTTAAT 58.818 37.500 0.00 0.00 44.66 1.40
405 406 5.645497 AGATTTTCTGTCTCGCAGCTTAATT 59.355 36.000 0.00 0.00 44.66 1.40
406 407 5.689383 TTTTCTGTCTCGCAGCTTAATTT 57.311 34.783 0.00 0.00 44.66 1.82
407 408 4.928661 TTCTGTCTCGCAGCTTAATTTC 57.071 40.909 0.00 0.00 44.66 2.17
408 409 4.193826 TCTGTCTCGCAGCTTAATTTCT 57.806 40.909 0.00 0.00 44.66 2.52
409 410 4.569943 TCTGTCTCGCAGCTTAATTTCTT 58.430 39.130 0.00 0.00 44.66 2.52
410 411 4.627467 TCTGTCTCGCAGCTTAATTTCTTC 59.373 41.667 0.00 0.00 44.66 2.87
411 412 4.314961 TGTCTCGCAGCTTAATTTCTTCA 58.685 39.130 0.00 0.00 0.00 3.02
412 413 4.937620 TGTCTCGCAGCTTAATTTCTTCAT 59.062 37.500 0.00 0.00 0.00 2.57
413 414 5.063944 TGTCTCGCAGCTTAATTTCTTCATC 59.936 40.000 0.00 0.00 0.00 2.92
414 415 4.572389 TCTCGCAGCTTAATTTCTTCATCC 59.428 41.667 0.00 0.00 0.00 3.51
415 416 4.517285 TCGCAGCTTAATTTCTTCATCCT 58.483 39.130 0.00 0.00 0.00 3.24
416 417 4.943705 TCGCAGCTTAATTTCTTCATCCTT 59.056 37.500 0.00 0.00 0.00 3.36
417 418 5.032863 CGCAGCTTAATTTCTTCATCCTTG 58.967 41.667 0.00 0.00 0.00 3.61
418 419 4.802563 GCAGCTTAATTTCTTCATCCTTGC 59.197 41.667 0.00 0.00 0.00 4.01
419 420 5.622914 GCAGCTTAATTTCTTCATCCTTGCA 60.623 40.000 0.00 0.00 0.00 4.08
420 421 6.392354 CAGCTTAATTTCTTCATCCTTGCAA 58.608 36.000 0.00 0.00 0.00 4.08
421 422 6.869913 CAGCTTAATTTCTTCATCCTTGCAAA 59.130 34.615 0.00 0.00 0.00 3.68
422 423 7.548075 CAGCTTAATTTCTTCATCCTTGCAAAT 59.452 33.333 0.00 0.00 0.00 2.32
423 424 8.752187 AGCTTAATTTCTTCATCCTTGCAAATA 58.248 29.630 0.00 0.00 0.00 1.40
424 425 9.369904 GCTTAATTTCTTCATCCTTGCAAATAA 57.630 29.630 0.00 0.00 0.00 1.40
428 429 8.767478 ATTTCTTCATCCTTGCAAATAAACTG 57.233 30.769 0.00 0.00 0.00 3.16
429 430 7.523293 TTCTTCATCCTTGCAAATAAACTGA 57.477 32.000 0.00 0.00 0.00 3.41
430 431 7.523293 TCTTCATCCTTGCAAATAAACTGAA 57.477 32.000 0.00 3.89 0.00 3.02
431 432 8.125978 TCTTCATCCTTGCAAATAAACTGAAT 57.874 30.769 0.00 0.00 0.00 2.57
432 433 9.241919 TCTTCATCCTTGCAAATAAACTGAATA 57.758 29.630 0.00 0.00 0.00 1.75
433 434 9.859427 CTTCATCCTTGCAAATAAACTGAATAA 57.141 29.630 0.00 0.00 0.00 1.40
450 451 9.902196 AACTGAATAAATAAAGGGTTTAACGTG 57.098 29.630 0.00 0.00 0.00 4.49
451 452 8.517056 ACTGAATAAATAAAGGGTTTAACGTGG 58.483 33.333 0.00 0.00 0.00 4.94
452 453 7.314393 TGAATAAATAAAGGGTTTAACGTGGC 58.686 34.615 0.00 0.00 0.00 5.01
453 454 7.177041 TGAATAAATAAAGGGTTTAACGTGGCT 59.823 33.333 0.00 0.00 0.00 4.75
454 455 8.578448 AATAAATAAAGGGTTTAACGTGGCTA 57.422 30.769 0.00 0.00 0.00 3.93
455 456 8.756486 ATAAATAAAGGGTTTAACGTGGCTAT 57.244 30.769 0.00 0.00 0.00 2.97
456 457 7.470935 AAATAAAGGGTTTAACGTGGCTATT 57.529 32.000 0.00 0.00 0.00 1.73
457 458 4.776795 AAAGGGTTTAACGTGGCTATTG 57.223 40.909 0.00 0.00 0.00 1.90
458 459 3.428413 AGGGTTTAACGTGGCTATTGT 57.572 42.857 0.00 0.00 0.00 2.71
459 460 3.078837 AGGGTTTAACGTGGCTATTGTG 58.921 45.455 0.00 0.00 0.00 3.33
460 461 3.075884 GGGTTTAACGTGGCTATTGTGA 58.924 45.455 0.00 0.00 0.00 3.58
461 462 3.120095 GGGTTTAACGTGGCTATTGTGAC 60.120 47.826 0.00 0.00 0.00 3.67
462 463 3.120095 GGTTTAACGTGGCTATTGTGACC 60.120 47.826 0.00 0.00 0.00 4.02
463 464 3.404224 TTAACGTGGCTATTGTGACCA 57.596 42.857 0.00 0.00 0.00 4.02
464 465 2.264005 AACGTGGCTATTGTGACCAA 57.736 45.000 0.00 0.00 34.63 3.67
465 466 2.264005 ACGTGGCTATTGTGACCAAA 57.736 45.000 0.00 0.00 34.63 3.28
466 467 2.577700 ACGTGGCTATTGTGACCAAAA 58.422 42.857 0.00 0.00 34.63 2.44
467 468 3.153919 ACGTGGCTATTGTGACCAAAAT 58.846 40.909 0.00 0.00 34.63 1.82
468 469 4.328536 ACGTGGCTATTGTGACCAAAATA 58.671 39.130 0.00 0.00 34.63 1.40
469 470 4.947388 ACGTGGCTATTGTGACCAAAATAT 59.053 37.500 0.00 0.00 34.63 1.28
470 471 5.417580 ACGTGGCTATTGTGACCAAAATATT 59.582 36.000 0.00 0.00 34.63 1.28
471 472 6.071616 ACGTGGCTATTGTGACCAAAATATTT 60.072 34.615 0.00 0.00 34.63 1.40
472 473 6.253298 CGTGGCTATTGTGACCAAAATATTTG 59.747 38.462 0.39 0.00 34.63 2.32
473 474 6.534793 GTGGCTATTGTGACCAAAATATTTGG 59.465 38.462 17.93 17.93 44.91 3.28
483 484 4.252878 CCAAAATATTTGGTGAACTGGCC 58.747 43.478 12.63 0.00 34.92 5.36
484 485 4.262808 CCAAAATATTTGGTGAACTGGCCA 60.263 41.667 4.71 4.71 34.92 5.36
485 486 5.303971 CAAAATATTTGGTGAACTGGCCAA 58.696 37.500 7.01 0.00 42.38 4.52
486 487 4.806640 AATATTTGGTGAACTGGCCAAG 57.193 40.909 7.01 3.48 44.43 3.61
487 488 2.380064 ATTTGGTGAACTGGCCAAGA 57.620 45.000 7.01 0.00 44.43 3.02
488 489 2.380064 TTTGGTGAACTGGCCAAGAT 57.620 45.000 7.01 0.00 44.43 2.40
489 490 3.517296 TTTGGTGAACTGGCCAAGATA 57.483 42.857 7.01 0.00 44.43 1.98
490 491 3.737559 TTGGTGAACTGGCCAAGATAT 57.262 42.857 7.01 0.00 39.57 1.63
491 492 3.737559 TGGTGAACTGGCCAAGATATT 57.262 42.857 7.01 0.00 0.00 1.28
492 493 4.046286 TGGTGAACTGGCCAAGATATTT 57.954 40.909 7.01 0.00 0.00 1.40
493 494 4.415596 TGGTGAACTGGCCAAGATATTTT 58.584 39.130 7.01 0.00 0.00 1.82
494 495 4.837860 TGGTGAACTGGCCAAGATATTTTT 59.162 37.500 7.01 0.00 0.00 1.94
495 496 5.047377 TGGTGAACTGGCCAAGATATTTTTC 60.047 40.000 7.01 0.36 0.00 2.29
496 497 5.185828 GGTGAACTGGCCAAGATATTTTTCT 59.814 40.000 7.01 0.00 0.00 2.52
497 498 6.295292 GGTGAACTGGCCAAGATATTTTTCTT 60.295 38.462 7.01 0.00 36.38 2.52
498 499 7.154656 GTGAACTGGCCAAGATATTTTTCTTT 58.845 34.615 7.01 0.00 33.69 2.52
499 500 8.303876 GTGAACTGGCCAAGATATTTTTCTTTA 58.696 33.333 7.01 0.00 33.69 1.85
500 501 9.034800 TGAACTGGCCAAGATATTTTTCTTTAT 57.965 29.630 7.01 0.00 33.69 1.40
524 525 6.946229 ATATAAACTCGATGGTTATCACGC 57.054 37.500 7.99 0.00 39.17 5.34
525 526 1.935933 AACTCGATGGTTATCACGCC 58.064 50.000 0.00 0.00 32.67 5.68
526 527 0.821517 ACTCGATGGTTATCACGCCA 59.178 50.000 0.00 0.00 39.33 5.69
527 528 1.206132 ACTCGATGGTTATCACGCCAA 59.794 47.619 0.00 0.00 38.38 4.52
528 529 2.158957 ACTCGATGGTTATCACGCCAAT 60.159 45.455 0.00 0.00 38.38 3.16
529 530 2.872245 CTCGATGGTTATCACGCCAATT 59.128 45.455 0.00 0.00 38.38 2.32
530 531 4.055360 CTCGATGGTTATCACGCCAATTA 58.945 43.478 0.00 0.00 38.38 1.40
531 532 3.805422 TCGATGGTTATCACGCCAATTAC 59.195 43.478 0.00 0.00 38.38 1.89
532 533 3.558006 CGATGGTTATCACGCCAATTACA 59.442 43.478 0.00 0.00 38.38 2.41
533 534 4.318760 CGATGGTTATCACGCCAATTACAG 60.319 45.833 0.00 0.00 38.38 2.74
534 535 3.275143 TGGTTATCACGCCAATTACAGG 58.725 45.455 0.00 0.00 0.00 4.00
535 536 7.491161 GATGGTTATCACGCCAATTACAGGC 62.491 48.000 0.00 0.00 39.69 4.85
540 541 3.827634 GCCAATTACAGGCGGAGG 58.172 61.111 0.00 0.00 43.15 4.30
541 542 1.223487 GCCAATTACAGGCGGAGGA 59.777 57.895 0.00 0.00 43.15 3.71
542 543 0.393808 GCCAATTACAGGCGGAGGAA 60.394 55.000 0.00 0.00 43.15 3.36
543 544 1.668419 CCAATTACAGGCGGAGGAAG 58.332 55.000 0.00 0.00 0.00 3.46
544 545 1.065418 CCAATTACAGGCGGAGGAAGT 60.065 52.381 0.00 0.00 0.00 3.01
545 546 2.618045 CCAATTACAGGCGGAGGAAGTT 60.618 50.000 0.00 0.00 0.00 2.66
546 547 2.678336 CAATTACAGGCGGAGGAAGTTC 59.322 50.000 0.00 0.00 0.00 3.01
547 548 1.344065 TTACAGGCGGAGGAAGTTCA 58.656 50.000 5.01 0.00 0.00 3.18
548 549 1.344065 TACAGGCGGAGGAAGTTCAA 58.656 50.000 5.01 0.00 0.00 2.69
549 550 0.250338 ACAGGCGGAGGAAGTTCAAC 60.250 55.000 5.01 0.00 0.00 3.18
550 551 0.250295 CAGGCGGAGGAAGTTCAACA 60.250 55.000 5.01 0.00 0.00 3.33
551 552 0.035458 AGGCGGAGGAAGTTCAACAG 59.965 55.000 5.01 0.27 0.00 3.16
552 553 0.250338 GGCGGAGGAAGTTCAACAGT 60.250 55.000 5.01 0.00 0.00 3.55
553 554 1.594331 GCGGAGGAAGTTCAACAGTT 58.406 50.000 5.01 0.00 0.00 3.16
554 555 1.947456 GCGGAGGAAGTTCAACAGTTT 59.053 47.619 5.01 0.00 0.00 2.66
555 556 2.357952 GCGGAGGAAGTTCAACAGTTTT 59.642 45.455 5.01 0.00 0.00 2.43
556 557 3.181490 GCGGAGGAAGTTCAACAGTTTTT 60.181 43.478 5.01 0.00 0.00 1.94
557 558 4.351192 CGGAGGAAGTTCAACAGTTTTTG 58.649 43.478 5.01 0.00 0.00 2.44
558 559 4.142469 CGGAGGAAGTTCAACAGTTTTTGT 60.142 41.667 5.01 0.00 43.45 2.83
568 569 3.708563 ACAGTTTTTGTTATGCGCACT 57.291 38.095 14.90 4.70 36.31 4.40
569 570 3.371168 ACAGTTTTTGTTATGCGCACTG 58.629 40.909 14.90 14.90 36.31 3.66
570 571 3.181491 ACAGTTTTTGTTATGCGCACTGT 60.181 39.130 14.90 15.63 38.80 3.55
571 572 3.796178 CAGTTTTTGTTATGCGCACTGTT 59.204 39.130 14.90 0.00 0.00 3.16
572 573 3.796178 AGTTTTTGTTATGCGCACTGTTG 59.204 39.130 14.90 0.00 0.00 3.33
573 574 1.764851 TTTGTTATGCGCACTGTTGC 58.235 45.000 14.90 0.23 46.21 4.17
596 597 2.126071 GCTGAACGAGCGGTGCTA 60.126 61.111 0.00 0.00 39.88 3.49
597 598 2.161486 GCTGAACGAGCGGTGCTAG 61.161 63.158 0.00 0.00 39.88 3.42
598 599 2.126071 TGAACGAGCGGTGCTAGC 60.126 61.111 8.10 8.10 39.88 3.42
600 601 1.310216 TGAACGAGCGGTGCTAGCTA 61.310 55.000 17.23 0.00 46.13 3.32
601 602 0.866483 GAACGAGCGGTGCTAGCTAC 60.866 60.000 17.23 12.05 46.13 3.58
602 603 1.592400 AACGAGCGGTGCTAGCTACA 61.592 55.000 17.23 0.00 46.13 2.74
603 604 1.586564 CGAGCGGTGCTAGCTACAC 60.587 63.158 17.23 14.44 46.13 2.90
609 610 3.330766 GTGCTAGCTACACCTCGTG 57.669 57.895 17.23 0.00 39.75 4.35
611 612 0.809385 TGCTAGCTACACCTCGTGTC 59.191 55.000 17.23 0.00 43.92 3.67
612 613 0.100861 GCTAGCTACACCTCGTGTCC 59.899 60.000 7.70 0.00 43.92 4.02
613 614 1.752683 CTAGCTACACCTCGTGTCCT 58.247 55.000 0.00 2.52 43.92 3.85
614 615 2.915349 CTAGCTACACCTCGTGTCCTA 58.085 52.381 0.00 3.49 43.92 2.94
615 616 2.211250 AGCTACACCTCGTGTCCTAA 57.789 50.000 0.00 0.00 43.92 2.69
616 617 2.736347 AGCTACACCTCGTGTCCTAAT 58.264 47.619 0.00 0.00 43.92 1.73
617 618 3.097614 AGCTACACCTCGTGTCCTAATT 58.902 45.455 0.00 0.00 43.92 1.40
618 619 3.514309 AGCTACACCTCGTGTCCTAATTT 59.486 43.478 0.00 0.00 43.92 1.82
619 620 3.864003 GCTACACCTCGTGTCCTAATTTC 59.136 47.826 0.00 0.00 43.92 2.17
620 621 4.619863 GCTACACCTCGTGTCCTAATTTCA 60.620 45.833 0.00 0.00 43.92 2.69
631 632 6.750501 CGTGTCCTAATTTCACTTCGATCTTA 59.249 38.462 0.00 0.00 0.00 2.10
651 652 3.594603 ACACTGACTATCCGGTTTGAG 57.405 47.619 0.00 0.00 0.00 3.02
652 653 2.271800 CACTGACTATCCGGTTTGAGC 58.728 52.381 0.00 0.00 0.00 4.26
657 658 1.006832 CTATCCGGTTTGAGCCAACG 58.993 55.000 0.00 0.00 0.00 4.10
658 659 0.609151 TATCCGGTTTGAGCCAACGA 59.391 50.000 0.00 0.00 0.00 3.85
683 684 4.445545 GTGGCTTACACGCGCTGC 62.446 66.667 5.73 3.17 40.85 5.25
687 688 2.092291 GCTTACACGCGCTGCACTA 61.092 57.895 5.73 0.00 0.00 2.74
688 689 1.991430 CTTACACGCGCTGCACTAG 59.009 57.895 5.73 0.00 0.00 2.57
744 745 3.093574 CGCACGATACTGATTTGCAAAG 58.906 45.455 18.19 6.55 32.51 2.77
745 746 3.424829 CGCACGATACTGATTTGCAAAGT 60.425 43.478 18.19 12.40 32.51 2.66
746 747 4.201676 CGCACGATACTGATTTGCAAAGTA 60.202 41.667 18.19 14.20 32.51 2.24
747 748 5.022021 GCACGATACTGATTTGCAAAGTAC 58.978 41.667 18.19 11.61 33.24 2.73
814 823 3.179265 CGTCGTCGTGGTCATGGC 61.179 66.667 0.00 0.00 0.00 4.40
848 861 2.083167 AAACAAAATGGGCATCGCTG 57.917 45.000 0.00 0.00 0.00 5.18
852 865 2.270297 AAAATGGGCATCGCTGTCGC 62.270 55.000 0.00 0.00 35.26 5.19
866 879 0.666274 TGTCGCTTAACTCGCAGTGG 60.666 55.000 0.00 0.00 0.00 4.00
890 903 2.332654 CCGTGCAAGCCACTAACCC 61.333 63.158 0.00 0.00 42.42 4.11
897 910 2.895372 GCCACTAACCCATCGGCG 60.895 66.667 0.00 0.00 32.14 6.46
942 970 1.367471 CTGGTCAGTTCCTGCGTGA 59.633 57.895 0.00 0.00 0.00 4.35
954 983 1.368641 CTGCGTGAAATTCCCATCGA 58.631 50.000 0.00 0.00 0.00 3.59
981 1010 2.677971 GCAACCGTGCGTCATCTAT 58.322 52.632 0.00 0.00 41.93 1.98
1104 1139 2.590007 GCATTCCCTCTGCGCGAT 60.590 61.111 12.10 0.00 0.00 4.58
1234 1269 3.083349 CGGGCTGGGAGGTCATCA 61.083 66.667 0.00 0.00 0.00 3.07
1235 1270 2.592308 GGGCTGGGAGGTCATCAC 59.408 66.667 0.00 0.00 0.00 3.06
1381 1428 2.829914 GCATCATGCCCGAGCCAA 60.830 61.111 0.00 0.00 37.42 4.52
1398 1451 1.301716 AACGCGGACTCAGCAACAT 60.302 52.632 12.47 0.00 34.19 2.71
1782 1850 1.734137 CACCTACGATCCTCCACGG 59.266 63.158 0.00 0.00 0.00 4.94
1785 1853 3.825833 CTACGATCCTCCACGGCGC 62.826 68.421 6.90 0.00 0.00 6.53
1887 1967 2.852075 TTCCTGCGGGAGTGGGTT 60.852 61.111 15.42 0.00 43.29 4.11
1940 2020 0.796312 TACGTCTACGACAACGGGAC 59.204 55.000 9.86 0.00 42.99 4.46
2040 2120 2.564553 AAACTCTAGAGGCCGCGCTG 62.565 60.000 23.50 0.00 0.00 5.18
2043 2123 3.826754 CTAGAGGCCGCGCTGTCA 61.827 66.667 6.12 0.00 0.00 3.58
2131 2211 0.539051 CTCTCCACACTGGGTCCATC 59.461 60.000 0.00 0.00 38.32 3.51
2398 2481 1.514678 AAGCAAATGGAGCACGCGAA 61.515 50.000 15.93 0.00 0.00 4.70
2637 2720 2.230130 TCGGCCTTGGATTTGGAAAT 57.770 45.000 0.00 0.00 0.00 2.17
2716 2799 7.748691 TGAAAACATGATCAAGAGACATTGA 57.251 32.000 4.68 0.00 43.04 2.57
2895 2983 2.029290 TGTTAAGGCCGAGTCACTCTTC 60.029 50.000 2.61 0.00 0.00 2.87
3129 3217 2.340337 TGCATTGACGACATCTGACAG 58.660 47.619 0.00 0.00 0.00 3.51
3249 3337 5.948992 AAGAAGGCAAGAACAGTTATGAC 57.051 39.130 3.28 0.29 0.00 3.06
3275 3363 9.607988 CACAGTGTTATAGGAACAACCATAATA 57.392 33.333 0.00 0.00 42.04 0.98
3305 3393 3.273919 ACAAAAGCTTTGATGTCGAGC 57.726 42.857 13.54 0.00 36.68 5.03
3312 3400 2.092838 GCTTTGATGTCGAGCAGTGTAC 59.907 50.000 0.00 0.00 36.45 2.90
3366 3454 2.353030 GTTTGTTGGCCACGACGC 60.353 61.111 3.88 0.00 33.43 5.19
3377 3465 1.290203 CCACGACGCTGCTGAATAAT 58.710 50.000 0.00 0.00 0.00 1.28
3392 3480 6.116126 GCTGAATAATTTCCAGTCCTACAGT 58.884 40.000 0.00 0.00 0.00 3.55
3411 3500 8.421784 CCTACAGTAATTTCATAGGAAGTAGCA 58.578 37.037 6.59 0.00 35.38 3.49
3435 3524 6.668541 GCATTCAGCTCAAACTAGATGTTA 57.331 37.500 0.00 0.00 37.91 2.41
3436 3525 6.481984 GCATTCAGCTCAAACTAGATGTTAC 58.518 40.000 0.00 0.00 37.91 2.50
3437 3526 6.092670 GCATTCAGCTCAAACTAGATGTTACA 59.907 38.462 0.00 0.00 37.91 2.41
3438 3527 7.361201 GCATTCAGCTCAAACTAGATGTTACAA 60.361 37.037 0.00 0.00 37.91 2.41
3439 3528 8.506437 CATTCAGCTCAAACTAGATGTTACAAA 58.494 33.333 0.00 0.00 38.03 2.83
3440 3529 7.658179 TCAGCTCAAACTAGATGTTACAAAG 57.342 36.000 0.00 0.00 38.03 2.77
3441 3530 6.650807 TCAGCTCAAACTAGATGTTACAAAGG 59.349 38.462 0.00 0.00 38.03 3.11
3442 3531 6.650807 CAGCTCAAACTAGATGTTACAAAGGA 59.349 38.462 0.00 0.00 38.03 3.36
3443 3532 6.876257 AGCTCAAACTAGATGTTACAAAGGAG 59.124 38.462 0.00 0.00 38.03 3.69
3451 3562 6.441088 AGATGTTACAAAGGAGAAAGGAGT 57.559 37.500 0.00 0.00 0.00 3.85
3461 3572 0.689623 AGAAAGGAGTGCTGACAGGG 59.310 55.000 4.26 0.00 0.00 4.45
3464 3575 1.484444 AAGGAGTGCTGACAGGGGAC 61.484 60.000 4.26 0.00 0.00 4.46
3491 3602 3.536570 GGCCTTTTTACACAGCCAAAAA 58.463 40.909 0.00 0.00 43.32 1.94
3520 3631 6.033513 GTGTTGTCAGTTTGCTACAAAAGAAC 59.966 38.462 0.00 0.00 35.08 3.01
3528 3639 9.462174 CAGTTTGCTACAAAAGAACATCATTTA 57.538 29.630 0.00 0.00 0.00 1.40
3541 3653 9.454585 AAGAACATCATTTATCGTGCAAATATG 57.545 29.630 0.00 0.00 0.00 1.78
3542 3654 8.623903 AGAACATCATTTATCGTGCAAATATGT 58.376 29.630 0.00 0.00 30.11 2.29
3555 3667 8.858186 TCGTGCAAATATGTAATTTGATTTGTG 58.142 29.630 13.22 0.76 40.06 3.33
3556 3668 8.109391 CGTGCAAATATGTAATTTGATTTGTGG 58.891 33.333 13.22 0.00 40.06 4.17
3578 3690 5.535783 TGGAACTGGCATTTGGTATATGATG 59.464 40.000 0.00 0.00 0.00 3.07
3601 3713 5.105716 TGTTCTACTCCAGCTGTCTAATGTC 60.106 44.000 13.81 0.00 0.00 3.06
3602 3714 4.600062 TCTACTCCAGCTGTCTAATGTCA 58.400 43.478 13.81 0.00 0.00 3.58
3610 3722 5.413833 CCAGCTGTCTAATGTCAAAACTCAT 59.586 40.000 13.81 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.990360 GGGATGTTAAAGTTCCTTTGAAAATAA 57.010 29.630 0.00 0.00 35.21 1.40
12 13 9.148879 TGGGATGTTAAAGTTCCTTTGAAAATA 57.851 29.630 0.00 0.00 35.21 1.40
13 14 8.028652 TGGGATGTTAAAGTTCCTTTGAAAAT 57.971 30.769 0.00 0.00 35.21 1.82
14 15 7.425224 TGGGATGTTAAAGTTCCTTTGAAAA 57.575 32.000 0.00 0.00 35.21 2.29
15 16 7.610580 ATGGGATGTTAAAGTTCCTTTGAAA 57.389 32.000 0.00 0.00 35.21 2.69
16 17 7.177744 GGTATGGGATGTTAAAGTTCCTTTGAA 59.822 37.037 0.00 0.00 35.21 2.69
17 18 6.661805 GGTATGGGATGTTAAAGTTCCTTTGA 59.338 38.462 0.00 0.00 35.21 2.69
18 19 6.663523 AGGTATGGGATGTTAAAGTTCCTTTG 59.336 38.462 0.00 0.00 35.21 2.77
19 20 6.800890 AGGTATGGGATGTTAAAGTTCCTTT 58.199 36.000 0.00 0.00 37.46 3.11
20 21 6.402981 AGGTATGGGATGTTAAAGTTCCTT 57.597 37.500 0.00 0.00 0.00 3.36
21 22 6.402981 AAGGTATGGGATGTTAAAGTTCCT 57.597 37.500 0.00 0.00 0.00 3.36
22 23 7.476540 AAAAGGTATGGGATGTTAAAGTTCC 57.523 36.000 0.00 0.00 0.00 3.62
23 24 7.817478 CCAAAAAGGTATGGGATGTTAAAGTTC 59.183 37.037 0.00 0.00 32.87 3.01
24 25 7.511028 TCCAAAAAGGTATGGGATGTTAAAGTT 59.489 33.333 0.00 0.00 37.31 2.66
25 26 7.013834 TCCAAAAAGGTATGGGATGTTAAAGT 58.986 34.615 0.00 0.00 37.31 2.66
26 27 7.320399 GTCCAAAAAGGTATGGGATGTTAAAG 58.680 38.462 0.00 0.00 37.31 1.85
27 28 6.071840 CGTCCAAAAAGGTATGGGATGTTAAA 60.072 38.462 0.00 0.00 37.31 1.52
28 29 5.416326 CGTCCAAAAAGGTATGGGATGTTAA 59.584 40.000 0.00 0.00 37.31 2.01
29 30 4.944930 CGTCCAAAAAGGTATGGGATGTTA 59.055 41.667 0.00 0.00 37.31 2.41
30 31 3.761752 CGTCCAAAAAGGTATGGGATGTT 59.238 43.478 0.00 0.00 37.31 2.71
31 32 3.245122 ACGTCCAAAAAGGTATGGGATGT 60.245 43.478 0.00 0.00 41.72 3.06
32 33 3.352648 ACGTCCAAAAAGGTATGGGATG 58.647 45.455 0.00 0.00 39.88 3.51
33 34 3.732048 ACGTCCAAAAAGGTATGGGAT 57.268 42.857 0.00 0.00 37.31 3.85
34 35 3.150767 CAACGTCCAAAAAGGTATGGGA 58.849 45.455 0.00 0.00 37.31 4.37
35 36 2.230266 CCAACGTCCAAAAAGGTATGGG 59.770 50.000 0.00 0.00 37.31 4.00
36 37 3.150767 TCCAACGTCCAAAAAGGTATGG 58.849 45.455 0.00 0.00 39.02 2.74
37 38 4.839668 TTCCAACGTCCAAAAAGGTATG 57.160 40.909 0.00 0.00 39.02 2.39
38 39 6.478129 TCTATTCCAACGTCCAAAAAGGTAT 58.522 36.000 0.00 0.00 39.02 2.73
39 40 5.867330 TCTATTCCAACGTCCAAAAAGGTA 58.133 37.500 0.00 0.00 39.02 3.08
40 41 4.721132 TCTATTCCAACGTCCAAAAAGGT 58.279 39.130 0.00 0.00 39.02 3.50
41 42 5.240844 AGTTCTATTCCAACGTCCAAAAAGG 59.759 40.000 0.00 0.00 39.47 3.11
42 43 6.313744 AGTTCTATTCCAACGTCCAAAAAG 57.686 37.500 0.00 0.00 0.00 2.27
43 44 6.319152 TCAAGTTCTATTCCAACGTCCAAAAA 59.681 34.615 0.00 0.00 0.00 1.94
44 45 5.823570 TCAAGTTCTATTCCAACGTCCAAAA 59.176 36.000 0.00 0.00 0.00 2.44
45 46 5.369833 TCAAGTTCTATTCCAACGTCCAAA 58.630 37.500 0.00 0.00 0.00 3.28
46 47 4.963373 TCAAGTTCTATTCCAACGTCCAA 58.037 39.130 0.00 0.00 0.00 3.53
47 48 4.039973 ACTCAAGTTCTATTCCAACGTCCA 59.960 41.667 0.00 0.00 0.00 4.02
48 49 4.566987 ACTCAAGTTCTATTCCAACGTCC 58.433 43.478 0.00 0.00 0.00 4.79
49 50 7.647907 TTAACTCAAGTTCTATTCCAACGTC 57.352 36.000 0.00 0.00 39.31 4.34
50 51 9.715121 TTATTAACTCAAGTTCTATTCCAACGT 57.285 29.630 0.00 0.00 39.31 3.99
51 52 9.968743 GTTATTAACTCAAGTTCTATTCCAACG 57.031 33.333 0.00 0.00 39.31 4.10
72 73 9.113838 GTGAGGTCAATGTATCTTGATGTTATT 57.886 33.333 0.00 0.00 37.47 1.40
73 74 8.489489 AGTGAGGTCAATGTATCTTGATGTTAT 58.511 33.333 0.00 0.00 37.47 1.89
74 75 7.765819 CAGTGAGGTCAATGTATCTTGATGTTA 59.234 37.037 0.00 0.00 37.47 2.41
75 76 6.596888 CAGTGAGGTCAATGTATCTTGATGTT 59.403 38.462 0.00 0.00 37.47 2.71
76 77 6.111382 CAGTGAGGTCAATGTATCTTGATGT 58.889 40.000 0.00 0.00 37.47 3.06
77 78 6.600246 CAGTGAGGTCAATGTATCTTGATG 57.400 41.667 0.00 0.00 37.47 3.07
87 88 4.881850 GGGGTATTTACAGTGAGGTCAATG 59.118 45.833 5.90 5.90 46.23 2.82
88 89 4.538490 TGGGGTATTTACAGTGAGGTCAAT 59.462 41.667 0.00 0.00 0.00 2.57
89 90 3.911260 TGGGGTATTTACAGTGAGGTCAA 59.089 43.478 0.00 0.00 0.00 3.18
90 91 3.522759 TGGGGTATTTACAGTGAGGTCA 58.477 45.455 0.00 0.00 0.00 4.02
91 92 4.772886 ATGGGGTATTTACAGTGAGGTC 57.227 45.455 0.00 0.00 0.00 3.85
92 93 4.788617 AGAATGGGGTATTTACAGTGAGGT 59.211 41.667 0.00 0.00 0.00 3.85
93 94 5.373812 AGAATGGGGTATTTACAGTGAGG 57.626 43.478 0.00 0.00 0.00 3.86
94 95 5.590259 CCAAGAATGGGGTATTTACAGTGAG 59.410 44.000 0.00 0.00 43.51 3.51
95 96 5.505780 CCAAGAATGGGGTATTTACAGTGA 58.494 41.667 0.00 0.00 43.51 3.41
96 97 5.835113 CCAAGAATGGGGTATTTACAGTG 57.165 43.478 0.00 0.00 43.51 3.66
108 109 4.926668 GCTGGAAGTTGACCAAGAATGGG 61.927 52.174 0.00 0.00 44.19 4.00
109 110 2.229784 GCTGGAAGTTGACCAAGAATGG 59.770 50.000 0.00 0.00 45.03 3.16
110 111 2.095567 CGCTGGAAGTTGACCAAGAATG 60.096 50.000 0.00 0.00 36.95 2.67
111 112 2.154462 CGCTGGAAGTTGACCAAGAAT 58.846 47.619 0.00 0.00 36.95 2.40
112 113 1.134220 ACGCTGGAAGTTGACCAAGAA 60.134 47.619 0.00 0.00 36.95 2.52
113 114 0.468226 ACGCTGGAAGTTGACCAAGA 59.532 50.000 0.00 0.00 36.95 3.02
114 115 2.163818 TACGCTGGAAGTTGACCAAG 57.836 50.000 0.00 0.00 36.95 3.61
115 116 2.623878 TTACGCTGGAAGTTGACCAA 57.376 45.000 0.00 0.00 36.95 3.67
116 117 2.851263 ATTACGCTGGAAGTTGACCA 57.149 45.000 0.00 0.00 35.30 4.02
117 118 3.592059 TGTATTACGCTGGAAGTTGACC 58.408 45.455 0.00 0.00 35.30 4.02
118 119 4.868171 TGATGTATTACGCTGGAAGTTGAC 59.132 41.667 0.00 0.00 35.30 3.18
119 120 5.079689 TGATGTATTACGCTGGAAGTTGA 57.920 39.130 0.00 0.00 35.30 3.18
120 121 4.271049 CCTGATGTATTACGCTGGAAGTTG 59.729 45.833 6.59 0.00 35.30 3.16
121 122 4.081087 ACCTGATGTATTACGCTGGAAGTT 60.081 41.667 14.88 0.00 35.30 2.66
122 123 3.451178 ACCTGATGTATTACGCTGGAAGT 59.549 43.478 14.88 0.00 35.30 3.01
123 124 4.060038 ACCTGATGTATTACGCTGGAAG 57.940 45.455 14.88 0.00 0.00 3.46
124 125 4.188462 CAACCTGATGTATTACGCTGGAA 58.812 43.478 14.88 0.00 0.00 3.53
125 126 3.431626 CCAACCTGATGTATTACGCTGGA 60.432 47.826 14.88 0.00 0.00 3.86
126 127 2.872245 CCAACCTGATGTATTACGCTGG 59.128 50.000 9.42 9.42 0.00 4.85
127 128 3.531538 ACCAACCTGATGTATTACGCTG 58.468 45.455 0.00 0.00 0.00 5.18
128 129 3.196901 TGACCAACCTGATGTATTACGCT 59.803 43.478 0.00 0.00 0.00 5.07
129 130 3.527533 TGACCAACCTGATGTATTACGC 58.472 45.455 0.00 0.00 0.00 4.42
130 131 5.006153 TCTGACCAACCTGATGTATTACG 57.994 43.478 0.00 0.00 0.00 3.18
131 132 6.127310 ACTCTCTGACCAACCTGATGTATTAC 60.127 42.308 0.00 0.00 0.00 1.89
132 133 5.958380 ACTCTCTGACCAACCTGATGTATTA 59.042 40.000 0.00 0.00 0.00 0.98
133 134 4.780021 ACTCTCTGACCAACCTGATGTATT 59.220 41.667 0.00 0.00 0.00 1.89
134 135 4.357325 ACTCTCTGACCAACCTGATGTAT 58.643 43.478 0.00 0.00 0.00 2.29
135 136 3.779444 ACTCTCTGACCAACCTGATGTA 58.221 45.455 0.00 0.00 0.00 2.29
136 137 2.614259 ACTCTCTGACCAACCTGATGT 58.386 47.619 0.00 0.00 0.00 3.06
137 138 3.332919 CAACTCTCTGACCAACCTGATG 58.667 50.000 0.00 0.00 0.00 3.07
138 139 2.304180 CCAACTCTCTGACCAACCTGAT 59.696 50.000 0.00 0.00 0.00 2.90
139 140 1.694150 CCAACTCTCTGACCAACCTGA 59.306 52.381 0.00 0.00 0.00 3.86
140 141 1.694150 TCCAACTCTCTGACCAACCTG 59.306 52.381 0.00 0.00 0.00 4.00
141 142 1.694696 GTCCAACTCTCTGACCAACCT 59.305 52.381 0.00 0.00 0.00 3.50
142 143 1.270893 GGTCCAACTCTCTGACCAACC 60.271 57.143 3.14 0.00 46.29 3.77
143 144 2.171341 GGTCCAACTCTCTGACCAAC 57.829 55.000 3.14 0.00 46.29 3.77
147 148 1.633774 TGGAGGTCCAACTCTCTGAC 58.366 55.000 0.00 0.00 44.35 3.51
152 153 7.308683 AGGAGACTAATGGAGGTCCAACTCT 62.309 48.000 2.01 0.85 45.42 3.24
153 154 5.120861 AGGAGACTAATGGAGGTCCAACTC 61.121 50.000 2.01 7.23 45.42 3.01
154 155 3.246167 AGGAGACTAATGGAGGTCCAACT 60.246 47.826 2.01 0.00 45.42 3.16
155 156 3.108376 AGGAGACTAATGGAGGTCCAAC 58.892 50.000 2.01 0.00 45.42 3.77
156 157 3.491766 AGGAGACTAATGGAGGTCCAA 57.508 47.619 2.01 0.00 45.42 3.53
157 158 3.491766 AAGGAGACTAATGGAGGTCCA 57.508 47.619 0.00 0.00 46.94 4.02
158 159 4.548669 AGTAAGGAGACTAATGGAGGTCC 58.451 47.826 0.00 0.00 42.68 4.46
159 160 6.834969 AGTTAGTAAGGAGACTAATGGAGGTC 59.165 42.308 0.00 0.00 42.39 3.85
160 161 6.608002 CAGTTAGTAAGGAGACTAATGGAGGT 59.392 42.308 0.00 0.00 42.39 3.85
161 162 6.041069 CCAGTTAGTAAGGAGACTAATGGAGG 59.959 46.154 13.68 5.89 42.39 4.30
162 163 6.834451 TCCAGTTAGTAAGGAGACTAATGGAG 59.166 42.308 15.70 3.36 42.39 3.86
163 164 6.738635 TCCAGTTAGTAAGGAGACTAATGGA 58.261 40.000 15.70 15.70 42.39 3.41
173 174 3.008704 GGTTTGGCTCCAGTTAGTAAGGA 59.991 47.826 0.00 0.00 0.00 3.36
174 175 3.009143 AGGTTTGGCTCCAGTTAGTAAGG 59.991 47.826 0.00 0.00 0.00 2.69
175 176 4.254492 GAGGTTTGGCTCCAGTTAGTAAG 58.746 47.826 0.00 0.00 0.00 2.34
176 177 3.008704 GGAGGTTTGGCTCCAGTTAGTAA 59.991 47.826 0.00 0.00 39.45 2.24
177 178 2.570302 GGAGGTTTGGCTCCAGTTAGTA 59.430 50.000 0.00 0.00 39.45 1.82
178 179 1.351350 GGAGGTTTGGCTCCAGTTAGT 59.649 52.381 0.00 0.00 39.45 2.24
179 180 1.340114 GGGAGGTTTGGCTCCAGTTAG 60.340 57.143 0.00 0.00 41.34 2.34
180 181 0.696501 GGGAGGTTTGGCTCCAGTTA 59.303 55.000 0.00 0.00 41.34 2.24
181 182 1.360393 TGGGAGGTTTGGCTCCAGTT 61.360 55.000 0.00 0.00 41.34 3.16
182 183 1.360393 TTGGGAGGTTTGGCTCCAGT 61.360 55.000 0.00 0.00 41.34 4.00
183 184 0.895559 GTTGGGAGGTTTGGCTCCAG 60.896 60.000 0.00 0.00 41.34 3.86
184 185 1.152830 GTTGGGAGGTTTGGCTCCA 59.847 57.895 0.00 0.00 41.34 3.86
185 186 1.971695 CGTTGGGAGGTTTGGCTCC 60.972 63.158 0.00 0.00 38.96 4.70
186 187 0.322546 ATCGTTGGGAGGTTTGGCTC 60.323 55.000 0.00 0.00 0.00 4.70
187 188 0.112412 AATCGTTGGGAGGTTTGGCT 59.888 50.000 0.00 0.00 0.00 4.75
188 189 0.243636 CAATCGTTGGGAGGTTTGGC 59.756 55.000 0.00 0.00 0.00 4.52
189 190 0.243636 GCAATCGTTGGGAGGTTTGG 59.756 55.000 1.01 0.00 0.00 3.28
190 191 0.243636 GGCAATCGTTGGGAGGTTTG 59.756 55.000 0.00 0.00 0.00 2.93
191 192 0.898326 GGGCAATCGTTGGGAGGTTT 60.898 55.000 0.00 0.00 0.00 3.27
192 193 1.304134 GGGCAATCGTTGGGAGGTT 60.304 57.895 0.00 0.00 0.00 3.50
193 194 2.355115 GGGCAATCGTTGGGAGGT 59.645 61.111 0.00 0.00 0.00 3.85
194 195 2.046285 GTGGGCAATCGTTGGGAGG 61.046 63.158 0.00 0.00 0.00 4.30
195 196 0.251916 TAGTGGGCAATCGTTGGGAG 59.748 55.000 0.00 0.00 0.00 4.30
196 197 0.693622 TTAGTGGGCAATCGTTGGGA 59.306 50.000 0.00 0.00 0.00 4.37
197 198 0.808755 GTTAGTGGGCAATCGTTGGG 59.191 55.000 0.00 0.00 0.00 4.12
198 199 0.446222 CGTTAGTGGGCAATCGTTGG 59.554 55.000 0.00 0.00 0.00 3.77
199 200 1.127951 GTCGTTAGTGGGCAATCGTTG 59.872 52.381 0.00 0.00 0.00 4.10
200 201 1.001633 AGTCGTTAGTGGGCAATCGTT 59.998 47.619 0.00 0.00 0.00 3.85
201 202 0.606604 AGTCGTTAGTGGGCAATCGT 59.393 50.000 0.00 0.00 0.00 3.73
202 203 2.190981 GTAGTCGTTAGTGGGCAATCG 58.809 52.381 0.00 0.00 0.00 3.34
203 204 2.190981 CGTAGTCGTTAGTGGGCAATC 58.809 52.381 0.00 0.00 0.00 2.67
204 205 2.288961 CGTAGTCGTTAGTGGGCAAT 57.711 50.000 0.00 0.00 0.00 3.56
205 206 3.798646 CGTAGTCGTTAGTGGGCAA 57.201 52.632 0.00 0.00 0.00 4.52
216 217 3.111098 GCTGGTGGTTATTACGTAGTCG 58.889 50.000 0.00 0.00 43.93 4.18
217 218 4.357996 GAGCTGGTGGTTATTACGTAGTC 58.642 47.826 0.00 0.00 43.93 2.59
219 220 3.065786 TCGAGCTGGTGGTTATTACGTAG 59.934 47.826 0.00 0.00 0.00 3.51
220 221 3.016031 TCGAGCTGGTGGTTATTACGTA 58.984 45.455 0.00 0.00 0.00 3.57
221 222 1.820519 TCGAGCTGGTGGTTATTACGT 59.179 47.619 0.00 0.00 0.00 3.57
222 223 2.572191 TCGAGCTGGTGGTTATTACG 57.428 50.000 0.00 0.00 0.00 3.18
223 224 3.391049 GGATCGAGCTGGTGGTTATTAC 58.609 50.000 0.00 0.00 0.00 1.89
224 225 2.367567 GGGATCGAGCTGGTGGTTATTA 59.632 50.000 0.00 0.00 0.00 0.98
225 226 1.141053 GGGATCGAGCTGGTGGTTATT 59.859 52.381 0.00 0.00 0.00 1.40
226 227 0.759346 GGGATCGAGCTGGTGGTTAT 59.241 55.000 0.00 0.00 0.00 1.89
227 228 0.616395 TGGGATCGAGCTGGTGGTTA 60.616 55.000 0.00 0.00 0.00 2.85
228 229 1.903877 CTGGGATCGAGCTGGTGGTT 61.904 60.000 0.00 0.00 0.00 3.67
229 230 2.284625 TGGGATCGAGCTGGTGGT 60.285 61.111 0.00 0.00 0.00 4.16
230 231 1.903877 AACTGGGATCGAGCTGGTGG 61.904 60.000 0.00 0.00 0.00 4.61
231 232 0.460987 GAACTGGGATCGAGCTGGTG 60.461 60.000 0.00 0.00 0.00 4.17
232 233 1.617947 GGAACTGGGATCGAGCTGGT 61.618 60.000 0.00 0.00 0.00 4.00
233 234 1.144936 GGAACTGGGATCGAGCTGG 59.855 63.158 0.00 0.00 0.00 4.85
234 235 1.144936 GGGAACTGGGATCGAGCTG 59.855 63.158 0.00 0.00 0.00 4.24
235 236 0.909610 TTGGGAACTGGGATCGAGCT 60.910 55.000 0.00 0.00 0.00 4.09
236 237 0.462759 CTTGGGAACTGGGATCGAGC 60.463 60.000 0.00 0.00 0.00 5.03
237 238 0.179000 CCTTGGGAACTGGGATCGAG 59.821 60.000 0.00 0.00 0.00 4.04
238 239 0.252513 TCCTTGGGAACTGGGATCGA 60.253 55.000 0.00 0.00 0.00 3.59
239 240 0.618458 TTCCTTGGGAACTGGGATCG 59.382 55.000 0.00 0.00 36.71 3.69
240 241 1.064389 CCTTCCTTGGGAACTGGGATC 60.064 57.143 0.00 0.00 36.71 3.36
241 242 1.002857 CCTTCCTTGGGAACTGGGAT 58.997 55.000 0.00 0.00 36.71 3.85
242 243 0.402861 ACCTTCCTTGGGAACTGGGA 60.403 55.000 9.19 0.00 36.71 4.37
243 244 1.368374 TACCTTCCTTGGGAACTGGG 58.632 55.000 8.71 5.82 36.71 4.45
244 245 2.791655 GTTACCTTCCTTGGGAACTGG 58.208 52.381 1.68 0.00 45.21 4.00
248 249 5.076873 CAAGATTGTTACCTTCCTTGGGAA 58.923 41.667 0.00 0.00 39.66 3.97
249 250 4.105697 ACAAGATTGTTACCTTCCTTGGGA 59.894 41.667 0.00 0.00 38.47 4.37
250 251 4.407365 ACAAGATTGTTACCTTCCTTGGG 58.593 43.478 0.00 0.00 38.47 4.12
273 274 9.973450 TGCAGCTAAGTATTTTGTAATTTTGAA 57.027 25.926 0.00 0.00 0.00 2.69
274 275 9.624697 CTGCAGCTAAGTATTTTGTAATTTTGA 57.375 29.630 0.00 0.00 0.00 2.69
275 276 8.375465 GCTGCAGCTAAGTATTTTGTAATTTTG 58.625 33.333 31.33 0.00 38.21 2.44
276 277 8.466086 GCTGCAGCTAAGTATTTTGTAATTTT 57.534 30.769 31.33 0.00 38.21 1.82
294 295 1.372623 GCAACTTCCAAGCTGCAGC 60.373 57.895 31.53 31.53 45.07 5.25
295 296 4.959446 GCAACTTCCAAGCTGCAG 57.041 55.556 10.11 10.11 45.07 4.41
297 298 0.386838 AGTTGCAACTTCCAAGCTGC 59.613 50.000 26.36 7.61 45.73 5.25
298 299 2.877043 AAGTTGCAACTTCCAAGCTG 57.123 45.000 33.85 0.00 45.65 4.24
307 308 6.420604 GCATATACACAACAAAAGTTGCAACT 59.579 34.615 26.36 26.36 42.04 3.16
308 309 6.199908 TGCATATACACAACAAAAGTTGCAAC 59.800 34.615 22.17 22.17 37.83 4.17
309 310 6.276091 TGCATATACACAACAAAAGTTGCAA 58.724 32.000 8.16 0.00 37.83 4.08
310 311 5.836347 TGCATATACACAACAAAAGTTGCA 58.164 33.333 8.16 0.00 37.83 4.08
311 312 6.365789 ACATGCATATACACAACAAAAGTTGC 59.634 34.615 0.00 0.00 37.83 4.17
312 313 7.381948 ACACATGCATATACACAACAAAAGTTG 59.618 33.333 0.00 6.80 39.98 3.16
313 314 7.381948 CACACATGCATATACACAACAAAAGTT 59.618 33.333 0.00 0.00 0.00 2.66
314 315 6.862608 CACACATGCATATACACAACAAAAGT 59.137 34.615 0.00 0.00 0.00 2.66
315 316 6.862608 ACACACATGCATATACACAACAAAAG 59.137 34.615 0.00 0.00 0.00 2.27
316 317 6.743110 ACACACATGCATATACACAACAAAA 58.257 32.000 0.00 0.00 0.00 2.44
317 318 6.324561 ACACACATGCATATACACAACAAA 57.675 33.333 0.00 0.00 0.00 2.83
318 319 5.956068 ACACACATGCATATACACAACAA 57.044 34.783 0.00 0.00 0.00 2.83
319 320 5.697826 CAACACACATGCATATACACAACA 58.302 37.500 0.00 0.00 0.00 3.33
320 321 4.558470 GCAACACACATGCATATACACAAC 59.442 41.667 0.00 0.00 43.29 3.32
321 322 4.380339 GGCAACACACATGCATATACACAA 60.380 41.667 0.00 0.00 45.60 3.33
322 323 3.128415 GGCAACACACATGCATATACACA 59.872 43.478 0.00 0.00 45.60 3.72
323 324 3.378112 AGGCAACACACATGCATATACAC 59.622 43.478 0.00 0.00 45.60 2.90
324 325 3.377798 CAGGCAACACACATGCATATACA 59.622 43.478 0.00 0.00 45.60 2.29
325 326 3.378112 ACAGGCAACACACATGCATATAC 59.622 43.478 0.00 0.00 45.60 1.47
326 327 3.619419 ACAGGCAACACACATGCATATA 58.381 40.909 0.00 0.00 45.60 0.86
327 328 2.449464 ACAGGCAACACACATGCATAT 58.551 42.857 0.00 0.00 45.60 1.78
328 329 1.908344 ACAGGCAACACACATGCATA 58.092 45.000 0.00 0.00 45.60 3.14
329 330 1.042229 AACAGGCAACACACATGCAT 58.958 45.000 0.00 0.00 45.60 3.96
330 331 0.822811 AAACAGGCAACACACATGCA 59.177 45.000 0.00 0.00 45.60 3.96
331 332 2.791383 TAAACAGGCAACACACATGC 57.209 45.000 0.00 0.00 43.08 4.06
332 333 3.801594 GGTTTAAACAGGCAACACACATG 59.198 43.478 19.57 0.00 41.41 3.21
333 334 3.449018 TGGTTTAAACAGGCAACACACAT 59.551 39.130 19.57 0.00 41.41 3.21
334 335 2.826128 TGGTTTAAACAGGCAACACACA 59.174 40.909 19.57 2.05 41.41 3.72
335 336 3.512033 TGGTTTAAACAGGCAACACAC 57.488 42.857 19.57 0.00 41.41 3.82
336 337 4.537135 TTTGGTTTAAACAGGCAACACA 57.463 36.364 19.57 3.42 41.41 3.72
337 338 7.655732 AGAATATTTGGTTTAAACAGGCAACAC 59.344 33.333 19.57 5.82 41.41 3.32
338 339 7.731054 AGAATATTTGGTTTAAACAGGCAACA 58.269 30.769 19.57 4.81 41.41 3.33
339 340 7.330946 GGAGAATATTTGGTTTAAACAGGCAAC 59.669 37.037 19.57 2.22 0.00 4.17
340 341 7.382898 GGAGAATATTTGGTTTAAACAGGCAA 58.617 34.615 19.57 11.63 0.00 4.52
341 342 6.071051 GGGAGAATATTTGGTTTAAACAGGCA 60.071 38.462 19.57 6.21 0.00 4.75
342 343 6.338146 GGGAGAATATTTGGTTTAAACAGGC 58.662 40.000 19.57 3.62 0.00 4.85
343 344 6.127168 GGGGGAGAATATTTGGTTTAAACAGG 60.127 42.308 19.57 0.00 0.00 4.00
344 345 6.439058 TGGGGGAGAATATTTGGTTTAAACAG 59.561 38.462 19.57 0.00 0.00 3.16
345 346 6.323737 TGGGGGAGAATATTTGGTTTAAACA 58.676 36.000 19.57 3.79 0.00 2.83
346 347 6.860790 TGGGGGAGAATATTTGGTTTAAAC 57.139 37.500 9.98 9.98 0.00 2.01
347 348 6.442244 CCTTGGGGGAGAATATTTGGTTTAAA 59.558 38.462 0.00 0.00 37.23 1.52
348 349 5.961421 CCTTGGGGGAGAATATTTGGTTTAA 59.039 40.000 0.00 0.00 37.23 1.52
349 350 5.524535 CCTTGGGGGAGAATATTTGGTTTA 58.475 41.667 0.00 0.00 37.23 2.01
350 351 4.361783 CCTTGGGGGAGAATATTTGGTTT 58.638 43.478 0.00 0.00 37.23 3.27
351 352 3.994317 CCTTGGGGGAGAATATTTGGTT 58.006 45.455 0.00 0.00 37.23 3.67
352 353 3.688049 CCTTGGGGGAGAATATTTGGT 57.312 47.619 0.00 0.00 37.23 3.67
365 366 7.105588 CAGAAAATCTAAAAATTCCCTTGGGG 58.894 38.462 5.78 0.00 46.11 4.96
366 367 7.679783 ACAGAAAATCTAAAAATTCCCTTGGG 58.320 34.615 0.00 0.00 0.00 4.12
367 368 8.588472 AGACAGAAAATCTAAAAATTCCCTTGG 58.412 33.333 0.00 0.00 0.00 3.61
368 369 9.631452 GAGACAGAAAATCTAAAAATTCCCTTG 57.369 33.333 0.00 0.00 0.00 3.61
369 370 8.515414 CGAGACAGAAAATCTAAAAATTCCCTT 58.485 33.333 0.00 0.00 0.00 3.95
370 371 7.362142 GCGAGACAGAAAATCTAAAAATTCCCT 60.362 37.037 0.00 0.00 0.00 4.20
371 372 6.747739 GCGAGACAGAAAATCTAAAAATTCCC 59.252 38.462 0.00 0.00 0.00 3.97
372 373 7.305474 TGCGAGACAGAAAATCTAAAAATTCC 58.695 34.615 0.00 0.00 0.00 3.01
389 390 4.314961 TGAAGAAATTAAGCTGCGAGACA 58.685 39.130 0.00 0.00 0.00 3.41
390 391 4.928661 TGAAGAAATTAAGCTGCGAGAC 57.071 40.909 0.00 0.00 0.00 3.36
391 392 4.572389 GGATGAAGAAATTAAGCTGCGAGA 59.428 41.667 0.00 0.00 0.00 4.04
392 393 4.574013 AGGATGAAGAAATTAAGCTGCGAG 59.426 41.667 0.00 0.00 0.00 5.03
393 394 4.517285 AGGATGAAGAAATTAAGCTGCGA 58.483 39.130 0.00 0.00 0.00 5.10
394 395 4.889832 AGGATGAAGAAATTAAGCTGCG 57.110 40.909 0.00 0.00 0.00 5.18
395 396 4.802563 GCAAGGATGAAGAAATTAAGCTGC 59.197 41.667 0.00 0.00 0.00 5.25
396 397 5.957798 TGCAAGGATGAAGAAATTAAGCTG 58.042 37.500 0.00 0.00 0.00 4.24
397 398 6.594788 TTGCAAGGATGAAGAAATTAAGCT 57.405 33.333 0.00 0.00 0.00 3.74
398 399 7.838771 ATTTGCAAGGATGAAGAAATTAAGC 57.161 32.000 0.00 0.00 0.00 3.09
402 403 9.211485 CAGTTTATTTGCAAGGATGAAGAAATT 57.789 29.630 0.00 0.00 0.00 1.82
403 404 8.587608 TCAGTTTATTTGCAAGGATGAAGAAAT 58.412 29.630 0.00 0.00 0.00 2.17
404 405 7.950512 TCAGTTTATTTGCAAGGATGAAGAAA 58.049 30.769 0.00 0.00 0.00 2.52
405 406 7.523293 TCAGTTTATTTGCAAGGATGAAGAA 57.477 32.000 0.00 0.00 0.00 2.52
406 407 7.523293 TTCAGTTTATTTGCAAGGATGAAGA 57.477 32.000 0.00 0.00 0.00 2.87
407 408 9.859427 TTATTCAGTTTATTTGCAAGGATGAAG 57.141 29.630 0.00 0.00 0.00 3.02
424 425 9.902196 CACGTTAAACCCTTTATTTATTCAGTT 57.098 29.630 0.00 0.00 0.00 3.16
425 426 8.517056 CCACGTTAAACCCTTTATTTATTCAGT 58.483 33.333 0.00 0.00 0.00 3.41
426 427 7.486870 GCCACGTTAAACCCTTTATTTATTCAG 59.513 37.037 0.00 0.00 0.00 3.02
427 428 7.177041 AGCCACGTTAAACCCTTTATTTATTCA 59.823 33.333 0.00 0.00 0.00 2.57
428 429 7.541162 AGCCACGTTAAACCCTTTATTTATTC 58.459 34.615 0.00 0.00 0.00 1.75
429 430 7.470935 AGCCACGTTAAACCCTTTATTTATT 57.529 32.000 0.00 0.00 0.00 1.40
430 431 8.756486 ATAGCCACGTTAAACCCTTTATTTAT 57.244 30.769 0.00 0.00 0.00 1.40
431 432 8.460428 CAATAGCCACGTTAAACCCTTTATTTA 58.540 33.333 0.00 0.00 0.00 1.40
432 433 7.039574 ACAATAGCCACGTTAAACCCTTTATTT 60.040 33.333 0.00 0.00 0.00 1.40
433 434 6.434965 ACAATAGCCACGTTAAACCCTTTATT 59.565 34.615 0.00 0.00 0.00 1.40
434 435 5.947566 ACAATAGCCACGTTAAACCCTTTAT 59.052 36.000 0.00 0.00 0.00 1.40
435 436 5.181622 CACAATAGCCACGTTAAACCCTTTA 59.818 40.000 0.00 0.00 0.00 1.85
436 437 4.022676 CACAATAGCCACGTTAAACCCTTT 60.023 41.667 0.00 0.00 0.00 3.11
437 438 3.504520 CACAATAGCCACGTTAAACCCTT 59.495 43.478 0.00 0.00 0.00 3.95
438 439 3.078837 CACAATAGCCACGTTAAACCCT 58.921 45.455 0.00 0.00 0.00 4.34
439 440 3.075884 TCACAATAGCCACGTTAAACCC 58.924 45.455 0.00 0.00 0.00 4.11
440 441 3.120095 GGTCACAATAGCCACGTTAAACC 60.120 47.826 0.00 0.00 0.00 3.27
441 442 3.499157 TGGTCACAATAGCCACGTTAAAC 59.501 43.478 0.00 0.00 0.00 2.01
442 443 3.741249 TGGTCACAATAGCCACGTTAAA 58.259 40.909 0.00 0.00 0.00 1.52
443 444 3.404224 TGGTCACAATAGCCACGTTAA 57.596 42.857 0.00 0.00 0.00 2.01
444 445 3.404224 TTGGTCACAATAGCCACGTTA 57.596 42.857 0.00 0.00 31.19 3.18
445 446 2.264005 TTGGTCACAATAGCCACGTT 57.736 45.000 0.00 0.00 31.19 3.99
446 447 2.264005 TTTGGTCACAATAGCCACGT 57.736 45.000 0.00 0.00 36.29 4.49
447 448 3.848272 ATTTTGGTCACAATAGCCACG 57.152 42.857 0.00 0.00 36.29 4.94
448 449 6.534793 CCAAATATTTTGGTCACAATAGCCAC 59.465 38.462 10.25 0.00 36.29 5.01
449 450 6.638610 CCAAATATTTTGGTCACAATAGCCA 58.361 36.000 10.25 0.00 36.29 4.75
461 462 4.252878 GGCCAGTTCACCAAATATTTTGG 58.747 43.478 15.66 15.66 44.91 3.28
462 463 4.892433 TGGCCAGTTCACCAAATATTTTG 58.108 39.130 0.00 0.00 31.46 2.44
463 464 5.306678 TCTTGGCCAGTTCACCAAATATTTT 59.693 36.000 5.11 0.00 45.03 1.82
464 465 4.837860 TCTTGGCCAGTTCACCAAATATTT 59.162 37.500 5.11 0.00 45.03 1.40
465 466 4.415596 TCTTGGCCAGTTCACCAAATATT 58.584 39.130 5.11 0.00 45.03 1.28
466 467 4.046286 TCTTGGCCAGTTCACCAAATAT 57.954 40.909 5.11 0.00 45.03 1.28
467 468 3.517296 TCTTGGCCAGTTCACCAAATA 57.483 42.857 5.11 0.00 45.03 1.40
468 469 2.380064 TCTTGGCCAGTTCACCAAAT 57.620 45.000 5.11 0.00 45.03 2.32
469 470 2.380064 ATCTTGGCCAGTTCACCAAA 57.620 45.000 5.11 0.00 45.03 3.28
470 471 3.737559 ATATCTTGGCCAGTTCACCAA 57.262 42.857 5.11 0.00 43.59 3.67
471 472 3.737559 AATATCTTGGCCAGTTCACCA 57.262 42.857 5.11 0.00 0.00 4.17
472 473 5.185828 AGAAAAATATCTTGGCCAGTTCACC 59.814 40.000 5.11 0.00 0.00 4.02
473 474 6.272822 AGAAAAATATCTTGGCCAGTTCAC 57.727 37.500 5.11 0.00 0.00 3.18
474 475 6.916360 AAGAAAAATATCTTGGCCAGTTCA 57.084 33.333 5.11 0.00 38.22 3.18
498 499 9.726232 GCGTGATAACCATCGAGTTTATATATA 57.274 33.333 0.00 0.00 33.51 0.86
499 500 7.705325 GGCGTGATAACCATCGAGTTTATATAT 59.295 37.037 0.00 0.00 33.51 0.86
500 501 7.031372 GGCGTGATAACCATCGAGTTTATATA 58.969 38.462 0.00 0.00 33.51 0.86
501 502 5.867716 GGCGTGATAACCATCGAGTTTATAT 59.132 40.000 0.00 0.00 33.51 0.86
502 503 5.221283 TGGCGTGATAACCATCGAGTTTATA 60.221 40.000 0.00 0.00 33.51 0.98
503 504 4.056050 GGCGTGATAACCATCGAGTTTAT 58.944 43.478 0.00 0.00 33.51 1.40
504 505 3.119065 TGGCGTGATAACCATCGAGTTTA 60.119 43.478 0.00 0.00 33.51 2.01
505 506 2.277084 GGCGTGATAACCATCGAGTTT 58.723 47.619 0.00 0.00 33.51 2.66
506 507 1.206132 TGGCGTGATAACCATCGAGTT 59.794 47.619 0.00 0.00 33.51 3.01
507 508 0.821517 TGGCGTGATAACCATCGAGT 59.178 50.000 0.00 0.00 33.51 4.18
508 509 1.934589 TTGGCGTGATAACCATCGAG 58.065 50.000 0.00 0.00 35.42 4.04
509 510 2.613026 ATTGGCGTGATAACCATCGA 57.387 45.000 0.00 0.00 35.42 3.59
510 511 3.558006 TGTAATTGGCGTGATAACCATCG 59.442 43.478 0.00 0.00 35.42 3.84
511 512 4.024048 CCTGTAATTGGCGTGATAACCATC 60.024 45.833 0.00 0.00 35.42 3.51
512 513 3.882888 CCTGTAATTGGCGTGATAACCAT 59.117 43.478 0.00 0.00 35.42 3.55
513 514 3.275143 CCTGTAATTGGCGTGATAACCA 58.725 45.455 0.00 0.00 0.00 3.67
514 515 2.032924 GCCTGTAATTGGCGTGATAACC 59.967 50.000 0.00 0.00 41.03 2.85
515 516 3.334272 GCCTGTAATTGGCGTGATAAC 57.666 47.619 0.00 0.00 41.03 1.89
523 524 0.393808 TTCCTCCGCCTGTAATTGGC 60.394 55.000 0.00 0.00 46.42 4.52
524 525 1.065418 ACTTCCTCCGCCTGTAATTGG 60.065 52.381 0.00 0.00 0.00 3.16
525 526 2.403252 ACTTCCTCCGCCTGTAATTG 57.597 50.000 0.00 0.00 0.00 2.32
526 527 2.304761 TGAACTTCCTCCGCCTGTAATT 59.695 45.455 0.00 0.00 0.00 1.40
527 528 1.906574 TGAACTTCCTCCGCCTGTAAT 59.093 47.619 0.00 0.00 0.00 1.89
528 529 1.344065 TGAACTTCCTCCGCCTGTAA 58.656 50.000 0.00 0.00 0.00 2.41
529 530 1.001633 GTTGAACTTCCTCCGCCTGTA 59.998 52.381 0.00 0.00 0.00 2.74
530 531 0.250338 GTTGAACTTCCTCCGCCTGT 60.250 55.000 0.00 0.00 0.00 4.00
531 532 0.250295 TGTTGAACTTCCTCCGCCTG 60.250 55.000 0.00 0.00 0.00 4.85
532 533 0.035458 CTGTTGAACTTCCTCCGCCT 59.965 55.000 0.00 0.00 0.00 5.52
533 534 0.250338 ACTGTTGAACTTCCTCCGCC 60.250 55.000 0.00 0.00 0.00 6.13
534 535 1.594331 AACTGTTGAACTTCCTCCGC 58.406 50.000 0.00 0.00 0.00 5.54
535 536 4.142469 ACAAAAACTGTTGAACTTCCTCCG 60.142 41.667 0.00 0.00 32.99 4.63
536 537 5.324784 ACAAAAACTGTTGAACTTCCTCC 57.675 39.130 0.00 0.00 32.99 4.30
548 549 3.181491 ACAGTGCGCATAACAAAAACTGT 60.181 39.130 15.91 15.98 41.31 3.55
549 550 3.371168 ACAGTGCGCATAACAAAAACTG 58.629 40.909 15.91 15.27 39.49 3.16
550 551 3.708563 ACAGTGCGCATAACAAAAACT 57.291 38.095 15.91 0.00 0.00 2.66
551 552 3.601360 GCAACAGTGCGCATAACAAAAAC 60.601 43.478 15.91 0.00 41.93 2.43
552 553 2.537625 GCAACAGTGCGCATAACAAAAA 59.462 40.909 15.91 0.00 41.93 1.94
553 554 2.123342 GCAACAGTGCGCATAACAAAA 58.877 42.857 15.91 0.00 41.93 2.44
554 555 1.764851 GCAACAGTGCGCATAACAAA 58.235 45.000 15.91 0.00 41.93 2.83
555 556 3.470520 GCAACAGTGCGCATAACAA 57.529 47.368 15.91 0.00 41.93 2.83
579 580 2.126071 TAGCACCGCTCGTTCAGC 60.126 61.111 0.00 0.00 45.85 4.26
580 581 2.161486 GCTAGCACCGCTCGTTCAG 61.161 63.158 10.63 0.00 40.44 3.02
581 582 1.310216 TAGCTAGCACCGCTCGTTCA 61.310 55.000 18.83 0.00 40.44 3.18
582 583 0.866483 GTAGCTAGCACCGCTCGTTC 60.866 60.000 18.83 0.00 40.44 3.95
583 584 1.139095 GTAGCTAGCACCGCTCGTT 59.861 57.895 18.83 0.00 40.44 3.85
584 585 2.044555 TGTAGCTAGCACCGCTCGT 61.045 57.895 18.83 0.00 40.44 4.18
585 586 1.586564 GTGTAGCTAGCACCGCTCG 60.587 63.158 18.83 0.00 40.44 5.03
586 587 1.227002 GGTGTAGCTAGCACCGCTC 60.227 63.158 18.83 4.65 45.57 5.03
587 588 2.893398 GGTGTAGCTAGCACCGCT 59.107 61.111 18.83 0.00 45.57 5.52
591 592 0.526662 ACACGAGGTGTAGCTAGCAC 59.473 55.000 18.83 13.33 45.56 4.40
592 593 2.957060 ACACGAGGTGTAGCTAGCA 58.043 52.632 18.83 0.00 45.56 3.49
601 602 3.926616 AGTGAAATTAGGACACGAGGTG 58.073 45.455 0.00 0.00 39.19 4.00
602 603 4.566987 GAAGTGAAATTAGGACACGAGGT 58.433 43.478 0.00 0.00 39.19 3.85
603 604 3.612860 CGAAGTGAAATTAGGACACGAGG 59.387 47.826 0.00 0.00 39.19 4.63
604 605 4.482386 TCGAAGTGAAATTAGGACACGAG 58.518 43.478 0.00 0.00 39.19 4.18
605 606 4.508461 TCGAAGTGAAATTAGGACACGA 57.492 40.909 0.00 0.00 39.19 4.35
606 607 5.103000 AGATCGAAGTGAAATTAGGACACG 58.897 41.667 0.00 0.00 39.19 4.49
607 608 6.969828 AAGATCGAAGTGAAATTAGGACAC 57.030 37.500 0.00 0.00 35.15 3.67
608 609 7.544566 GTGTAAGATCGAAGTGAAATTAGGACA 59.455 37.037 0.00 0.00 0.00 4.02
609 610 7.760340 AGTGTAAGATCGAAGTGAAATTAGGAC 59.240 37.037 0.00 0.00 0.00 3.85
610 611 7.759886 CAGTGTAAGATCGAAGTGAAATTAGGA 59.240 37.037 0.00 0.00 0.00 2.94
611 612 7.759886 TCAGTGTAAGATCGAAGTGAAATTAGG 59.240 37.037 0.00 0.00 0.00 2.69
612 613 8.587950 GTCAGTGTAAGATCGAAGTGAAATTAG 58.412 37.037 0.00 0.00 0.00 1.73
613 614 8.304596 AGTCAGTGTAAGATCGAAGTGAAATTA 58.695 33.333 0.00 0.00 0.00 1.40
614 615 7.155328 AGTCAGTGTAAGATCGAAGTGAAATT 58.845 34.615 0.00 0.00 0.00 1.82
615 616 6.692486 AGTCAGTGTAAGATCGAAGTGAAAT 58.308 36.000 0.00 0.00 0.00 2.17
616 617 6.085555 AGTCAGTGTAAGATCGAAGTGAAA 57.914 37.500 0.00 0.00 0.00 2.69
617 618 5.707242 AGTCAGTGTAAGATCGAAGTGAA 57.293 39.130 0.00 0.00 0.00 3.18
618 619 6.038382 GGATAGTCAGTGTAAGATCGAAGTGA 59.962 42.308 0.00 0.00 0.00 3.41
619 620 6.202937 GGATAGTCAGTGTAAGATCGAAGTG 58.797 44.000 0.00 0.00 0.00 3.16
620 621 5.007823 CGGATAGTCAGTGTAAGATCGAAGT 59.992 44.000 0.00 0.00 0.00 3.01
631 632 2.353803 GCTCAAACCGGATAGTCAGTGT 60.354 50.000 9.46 0.00 0.00 3.55
651 652 1.278637 CCACGTTGTCTTCGTTGGC 59.721 57.895 0.00 0.00 39.55 4.52
652 653 1.157870 AGCCACGTTGTCTTCGTTGG 61.158 55.000 0.00 0.00 39.55 3.77
657 658 2.943843 GTGTAAGCCACGTTGTCTTC 57.056 50.000 0.00 0.00 33.61 2.87
687 688 1.080705 GTTACGTCGCCACTGAGCT 60.081 57.895 0.00 0.00 0.00 4.09
688 689 2.434134 CGTTACGTCGCCACTGAGC 61.434 63.158 0.00 0.00 0.00 4.26
689 690 3.750162 CGTTACGTCGCCACTGAG 58.250 61.111 0.00 0.00 0.00 3.35
744 745 2.159599 ACTAGTGCTCGTGCTTACGTAC 60.160 50.000 11.19 0.00 40.48 3.67
745 746 2.079158 ACTAGTGCTCGTGCTTACGTA 58.921 47.619 11.19 0.00 40.48 3.57
746 747 0.879765 ACTAGTGCTCGTGCTTACGT 59.120 50.000 11.19 0.00 40.48 3.57
747 748 2.095532 ACTACTAGTGCTCGTGCTTACG 59.904 50.000 11.19 0.00 40.48 3.18
814 823 0.250553 TGTTTTAGCCACCCACGAGG 60.251 55.000 0.00 0.00 43.78 4.63
848 861 1.956620 GCCACTGCGAGTTAAGCGAC 61.957 60.000 2.13 0.00 37.44 5.19
852 865 1.398390 GATTGGCCACTGCGAGTTAAG 59.602 52.381 3.88 0.00 38.85 1.85
866 879 3.372730 TGGCTTGCACGGATTGGC 61.373 61.111 0.00 0.00 0.00 4.52
897 910 2.459442 CCTGCTTGTAGCTCGCTGC 61.459 63.158 0.85 0.27 42.97 5.25
942 970 1.507141 GCGGCGATCGATGGGAATTT 61.507 55.000 21.57 0.00 42.43 1.82
1381 1428 2.029288 CATGTTGCTGAGTCCGCGT 61.029 57.895 4.92 0.00 0.00 6.01
1434 1490 2.493030 CCATCGTCGGCGTTACCT 59.507 61.111 10.18 0.00 39.49 3.08
1940 2020 1.685765 TCCACCAGGTCATCCTCGG 60.686 63.158 0.00 0.00 43.07 4.63
2131 2211 5.533482 CATAGATTTCGTAGGGTTCTCTGG 58.467 45.833 0.00 0.00 0.00 3.86
2237 2320 3.589542 CCCCCTCCTTTGGGTGCA 61.590 66.667 0.00 0.00 45.70 4.57
2322 2405 2.759641 TAGTCAGCGACCGGTCCACT 62.760 60.000 28.52 23.83 32.18 4.00
2398 2481 2.066262 CTTGTAGTGGTTCACGCGAAT 58.934 47.619 15.93 0.00 39.64 3.34
2610 2693 0.107017 ATCCAAGGCCGAACCATCTG 60.107 55.000 0.00 0.00 43.14 2.90
2637 2720 0.966875 TTCGTCGCCTACCCAGCTTA 60.967 55.000 0.00 0.00 0.00 3.09
2716 2799 7.482169 TTTTGTACACACCAGAGAGATAGAT 57.518 36.000 0.00 0.00 0.00 1.98
2721 2804 3.388024 AGCTTTTGTACACACCAGAGAGA 59.612 43.478 0.00 0.00 0.00 3.10
2793 2880 5.577945 CACTGAAAAACATGCCATGTATTCC 59.422 40.000 22.98 11.29 44.07 3.01
2854 2942 0.994247 ACTCACCCAATCTGATGGCA 59.006 50.000 0.00 0.00 39.26 4.92
2895 2983 1.344763 GAAGACCCGGATATGGTGGAG 59.655 57.143 0.73 0.00 35.85 3.86
2920 3008 1.889829 CCGAAGAACACTCTCAGACCT 59.110 52.381 0.00 0.00 0.00 3.85
3129 3217 6.179040 AGCTATCTCCAATATTGCCTGAATC 58.821 40.000 10.11 0.00 0.00 2.52
3215 3303 1.906574 TGCCTTCTTATTCAGGTCGGT 59.093 47.619 0.00 0.00 32.06 4.69
3249 3337 7.915293 TTATGGTTGTTCCTATAACACTGTG 57.085 36.000 6.19 6.19 37.07 3.66
3275 3363 8.496707 ACATCAAAGCTTTTGTTTTCTGAATT 57.503 26.923 9.53 0.00 30.37 2.17
3276 3364 7.043192 CGACATCAAAGCTTTTGTTTTCTGAAT 60.043 33.333 15.77 0.51 30.37 2.57
3277 3365 6.253298 CGACATCAAAGCTTTTGTTTTCTGAA 59.747 34.615 15.77 0.00 30.37 3.02
3297 3385 1.257743 AGGTGTACACTGCTCGACAT 58.742 50.000 24.55 0.00 0.00 3.06
3305 3393 2.550208 GGACCAGGAAAGGTGTACACTG 60.550 54.545 24.55 13.80 43.38 3.66
3312 3400 2.372172 ACTTACAGGACCAGGAAAGGTG 59.628 50.000 0.00 0.00 43.38 4.00
3342 3430 0.741915 GTGGCCAACAAACCGAGAAA 59.258 50.000 7.24 0.00 0.00 2.52
3366 3454 6.115446 TGTAGGACTGGAAATTATTCAGCAG 58.885 40.000 0.00 0.00 37.29 4.24
3377 3465 8.265055 CCTATGAAATTACTGTAGGACTGGAAA 58.735 37.037 0.00 0.00 35.08 3.13
3392 3480 7.992608 TGAATGCTGCTACTTCCTATGAAATTA 59.007 33.333 0.00 0.00 0.00 1.40
3398 3486 3.497640 GCTGAATGCTGCTACTTCCTATG 59.502 47.826 0.00 0.00 38.95 2.23
3400 3488 3.185246 GCTGAATGCTGCTACTTCCTA 57.815 47.619 0.00 0.00 38.95 2.94
3401 3489 2.035530 GCTGAATGCTGCTACTTCCT 57.964 50.000 0.00 0.00 38.95 3.36
3432 3521 4.214332 CAGCACTCCTTTCTCCTTTGTAAC 59.786 45.833 0.00 0.00 0.00 2.50
3435 3524 2.439507 TCAGCACTCCTTTCTCCTTTGT 59.560 45.455 0.00 0.00 0.00 2.83
3436 3525 2.810852 GTCAGCACTCCTTTCTCCTTTG 59.189 50.000 0.00 0.00 0.00 2.77
3437 3526 2.439507 TGTCAGCACTCCTTTCTCCTTT 59.560 45.455 0.00 0.00 0.00 3.11
3438 3527 2.038295 CTGTCAGCACTCCTTTCTCCTT 59.962 50.000 0.00 0.00 0.00 3.36
3439 3528 1.622811 CTGTCAGCACTCCTTTCTCCT 59.377 52.381 0.00 0.00 0.00 3.69
3440 3529 1.338579 CCTGTCAGCACTCCTTTCTCC 60.339 57.143 0.00 0.00 0.00 3.71
3441 3530 1.338579 CCCTGTCAGCACTCCTTTCTC 60.339 57.143 0.00 0.00 0.00 2.87
3442 3531 0.689623 CCCTGTCAGCACTCCTTTCT 59.310 55.000 0.00 0.00 0.00 2.52
3443 3532 0.322008 CCCCTGTCAGCACTCCTTTC 60.322 60.000 0.00 0.00 0.00 2.62
3451 3562 1.619654 CAATTTGTCCCCTGTCAGCA 58.380 50.000 0.00 0.00 0.00 4.41
3461 3572 4.698575 TGTGTAAAAAGGCCAATTTGTCC 58.301 39.130 5.01 0.00 0.00 4.02
3464 3575 3.498018 GGCTGTGTAAAAAGGCCAATTTG 59.502 43.478 5.01 0.00 42.08 2.32
3528 3639 9.585099 ACAAATCAAATTACATATTTGCACGAT 57.415 25.926 0.00 0.00 41.06 3.73
3540 3652 5.069648 TGCCAGTTCCACAAATCAAATTACA 59.930 36.000 0.00 0.00 0.00 2.41
3541 3653 5.537188 TGCCAGTTCCACAAATCAAATTAC 58.463 37.500 0.00 0.00 0.00 1.89
3542 3654 5.798125 TGCCAGTTCCACAAATCAAATTA 57.202 34.783 0.00 0.00 0.00 1.40
3555 3667 5.536161 ACATCATATACCAAATGCCAGTTCC 59.464 40.000 0.00 0.00 0.00 3.62
3556 3668 6.639632 ACATCATATACCAAATGCCAGTTC 57.360 37.500 0.00 0.00 0.00 3.01
3578 3690 5.105716 TGACATTAGACAGCTGGAGTAGAAC 60.106 44.000 19.93 4.55 0.00 3.01
3602 3714 6.413892 TGGGAAAAGAAGCAAAATGAGTTTT 58.586 32.000 0.00 0.00 38.03 2.43
3636 3748 9.237706 TCCTCCTAAGTTTCCTAATTCCATAAT 57.762 33.333 0.00 0.00 0.00 1.28
3654 3784 7.958583 AGAAGATATAGCCATCTTTCCTCCTAA 59.041 37.037 7.12 0.00 43.66 2.69
3659 3789 8.677870 ACATAGAAGATATAGCCATCTTTCCT 57.322 34.615 7.12 4.43 43.66 3.36
3660 3790 9.377312 GAACATAGAAGATATAGCCATCTTTCC 57.623 37.037 7.12 0.00 43.66 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.