Multiple sequence alignment - TraesCS6A01G322600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G322600 chr6A 100.000 4134 0 0 1 4134 556553750 556557883 0.000000e+00 7635
1 TraesCS6A01G322600 chr6D 89.960 4213 285 63 2 4134 411668931 411673085 0.000000e+00 5310
2 TraesCS6A01G322600 chr6B 90.626 3275 187 47 945 4134 619028462 619031701 0.000000e+00 4237
3 TraesCS6A01G322600 chr6B 81.122 588 72 20 302 877 619027872 619028432 6.350000e-118 435
4 TraesCS6A01G322600 chr7D 78.008 723 150 8 3418 4134 628520436 628521155 2.930000e-121 446
5 TraesCS6A01G322600 chr7A 76.667 720 159 8 3421 4134 724654616 724653900 1.390000e-104 390


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G322600 chr6A 556553750 556557883 4133 False 7635 7635 100.000 1 4134 1 chr6A.!!$F1 4133
1 TraesCS6A01G322600 chr6D 411668931 411673085 4154 False 5310 5310 89.960 2 4134 1 chr6D.!!$F1 4132
2 TraesCS6A01G322600 chr6B 619027872 619031701 3829 False 2336 4237 85.874 302 4134 2 chr6B.!!$F1 3832
3 TraesCS6A01G322600 chr7D 628520436 628521155 719 False 446 446 78.008 3418 4134 1 chr7D.!!$F1 716
4 TraesCS6A01G322600 chr7A 724653900 724654616 716 True 390 390 76.667 3421 4134 1 chr7A.!!$R1 713

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
429 437 0.396435 TGGACGCAACATCTTCCACT 59.604 50.0 0.00 0.00 33.02 4.00 F
1475 1501 0.108992 ACAAATGCCGCATCTTGCTG 60.109 50.0 19.52 10.73 42.25 4.41 F
2092 2124 0.257039 ATTCCATGAGGCGCCTCTTT 59.743 50.0 46.04 34.05 43.12 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1792 1821 0.602905 AACGAGGAAAACCTCAGCGG 60.603 55.0 15.13 3.03 36.70 5.52 R
2586 2668 0.689623 AGAAAGGAGTGCTGACAGGG 59.310 55.0 4.26 0.00 0.00 4.45 R
3916 4029 0.539051 CTCTCCACACTGGGTCCATC 59.461 60.0 0.00 0.00 38.32 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.650139 AGTGACGAGTTAAGACGCAAAT 58.350 40.909 0.00 0.00 0.00 2.32
35 36 5.333035 CGAGTTAAGACGCAAATGAAGTTCA 60.333 40.000 8.27 8.27 0.00 3.18
127 130 7.414222 TCGTACAAATTATAGTCCAACCTCT 57.586 36.000 0.00 0.00 0.00 3.69
157 160 3.508793 TCCCTACTAACCACGAGACTTTG 59.491 47.826 0.00 0.00 0.00 2.77
159 162 4.460382 CCCTACTAACCACGAGACTTTGTA 59.540 45.833 0.00 0.00 0.00 2.41
161 164 6.319658 CCCTACTAACCACGAGACTTTGTATA 59.680 42.308 0.00 0.00 0.00 1.47
166 169 8.619546 ACTAACCACGAGACTTTGTATATCTAC 58.380 37.037 0.00 0.00 0.00 2.59
173 176 8.399425 ACGAGACTTTGTATATCTACTTGTGAG 58.601 37.037 0.00 0.00 0.00 3.51
207 210 9.851686 TCATATAAATTTTGATGTAGCCTCACT 57.148 29.630 0.00 0.00 0.00 3.41
208 211 9.888878 CATATAAATTTTGATGTAGCCTCACTG 57.111 33.333 0.00 0.00 0.00 3.66
210 213 6.899393 AAATTTTGATGTAGCCTCACTGAA 57.101 33.333 0.00 0.00 0.00 3.02
214 219 7.994425 TTTTGATGTAGCCTCACTGAAATTA 57.006 32.000 0.00 0.00 0.00 1.40
229 234 7.011950 TCACTGAAATTATGTGTCTTTTCGTGT 59.988 33.333 0.00 0.00 35.96 4.49
240 245 6.524933 TGTGTCTTTTCGTGTGTTAACATTTG 59.475 34.615 12.26 4.69 38.92 2.32
251 256 8.897809 CGTGTGTTAACATTTGGTTTATTGTAG 58.102 33.333 12.26 0.00 40.96 2.74
255 260 9.666626 TGTTAACATTTGGTTTATTGTAGAACG 57.333 29.630 3.59 0.00 40.96 3.95
313 319 4.827835 GCTTTTTATATGAGGAGGGGGAAC 59.172 45.833 0.00 0.00 0.00 3.62
324 330 1.155155 GGGGGAACATGGTGTTGGT 59.845 57.895 0.00 0.00 41.28 3.67
325 331 0.471022 GGGGGAACATGGTGTTGGTT 60.471 55.000 0.00 0.00 41.28 3.67
334 340 2.593346 TGGTGTTGGTTGTGATTTGC 57.407 45.000 0.00 0.00 0.00 3.68
344 351 5.426504 TGGTTGTGATTTGCAACAAAGATT 58.573 33.333 0.00 0.00 45.64 2.40
353 360 7.656542 TGATTTGCAACAAAGATTGATAAAGCA 59.343 29.630 0.00 0.00 34.33 3.91
357 364 7.324935 TGCAACAAAGATTGATAAAGCATGAT 58.675 30.769 0.00 0.00 0.00 2.45
360 367 7.649533 ACAAAGATTGATAAAGCATGATGGA 57.350 32.000 0.00 0.00 0.00 3.41
361 368 8.246430 ACAAAGATTGATAAAGCATGATGGAT 57.754 30.769 0.00 0.00 0.00 3.41
362 369 8.141909 ACAAAGATTGATAAAGCATGATGGATG 58.858 33.333 0.00 0.00 34.84 3.51
371 379 4.515028 AGCATGATGGATGAAGGAGAAA 57.485 40.909 0.00 0.00 33.31 2.52
394 402 2.323999 TGGTCGAAAAGGGGGTACTA 57.676 50.000 0.00 0.00 0.00 1.82
399 407 3.094572 TCGAAAAGGGGGTACTAGTGAG 58.905 50.000 5.39 0.00 0.00 3.51
402 410 3.797671 AAAGGGGGTACTAGTGAGGAT 57.202 47.619 5.39 0.00 0.00 3.24
429 437 0.396435 TGGACGCAACATCTTCCACT 59.604 50.000 0.00 0.00 33.02 4.00
434 442 2.549754 ACGCAACATCTTCCACTTCAAG 59.450 45.455 0.00 0.00 0.00 3.02
478 489 6.455647 GGGTTATCGACACAATCATAGATCA 58.544 40.000 0.00 0.00 0.00 2.92
483 494 5.133221 TCGACACAATCATAGATCAGGAGA 58.867 41.667 0.00 0.00 0.00 3.71
544 555 7.913789 TGACTATGCTTTCTTTTCCCTTACTA 58.086 34.615 0.00 0.00 0.00 1.82
553 564 7.722949 TTCTTTTCCCTTACTAATACTCCGA 57.277 36.000 0.00 0.00 0.00 4.55
557 568 6.645790 TTCCCTTACTAATACTCCGATGTC 57.354 41.667 0.00 0.00 0.00 3.06
558 569 4.758674 TCCCTTACTAATACTCCGATGTCG 59.241 45.833 0.00 0.00 39.44 4.35
559 570 4.518211 CCCTTACTAATACTCCGATGTCGT 59.482 45.833 1.44 0.00 37.74 4.34
562 573 7.094463 CCCTTACTAATACTCCGATGTCGTTAT 60.094 40.741 1.44 0.00 37.74 1.89
563 574 7.961827 CCTTACTAATACTCCGATGTCGTTATC 59.038 40.741 1.44 0.00 37.74 1.75
565 576 5.766670 ACTAATACTCCGATGTCGTTATCCA 59.233 40.000 1.44 0.00 37.74 3.41
566 577 4.768130 ATACTCCGATGTCGTTATCCAG 57.232 45.455 1.44 0.00 37.74 3.86
567 578 1.067212 ACTCCGATGTCGTTATCCAGC 59.933 52.381 1.44 0.00 37.74 4.85
568 579 1.338337 CTCCGATGTCGTTATCCAGCT 59.662 52.381 1.44 0.00 37.74 4.24
569 580 1.754803 TCCGATGTCGTTATCCAGCTT 59.245 47.619 1.44 0.00 37.74 3.74
570 581 2.128035 CCGATGTCGTTATCCAGCTTC 58.872 52.381 1.44 0.00 37.74 3.86
571 582 2.481276 CCGATGTCGTTATCCAGCTTCA 60.481 50.000 1.44 0.00 37.74 3.02
572 583 2.791560 CGATGTCGTTATCCAGCTTCAG 59.208 50.000 0.00 0.00 34.11 3.02
597 608 7.390718 AGTGTCATTATCCAACTTACCTCAAAC 59.609 37.037 0.00 0.00 0.00 2.93
616 627 5.703592 TCAAACGCAGGTATAACAACAGAAT 59.296 36.000 0.00 0.00 0.00 2.40
618 629 3.863424 ACGCAGGTATAACAACAGAATCG 59.137 43.478 0.00 0.00 0.00 3.34
619 630 3.302480 CGCAGGTATAACAACAGAATCGC 60.302 47.826 0.00 0.00 0.00 4.58
638 649 4.855340 TCGCCTATCCAATCCTTCTTTTT 58.145 39.130 0.00 0.00 0.00 1.94
671 682 3.674997 TCCCAACAGCTTAAGATGTCAC 58.325 45.455 25.41 0.00 44.74 3.67
673 684 2.749621 CCAACAGCTTAAGATGTCACCC 59.250 50.000 25.41 0.00 44.74 4.61
674 685 2.749621 CAACAGCTTAAGATGTCACCCC 59.250 50.000 25.41 0.00 44.74 4.95
694 705 8.014263 TCACCCCCTAGAATTATTGATGTACTA 58.986 37.037 0.00 0.00 0.00 1.82
765 786 5.248477 ACAATTAGGTAGAGTGAGCCAAGAA 59.752 40.000 0.00 0.00 0.00 2.52
769 790 4.646572 AGGTAGAGTGAGCCAAGAAAAAG 58.353 43.478 0.00 0.00 0.00 2.27
777 798 5.105063 GTGAGCCAAGAAAAAGCATAATCC 58.895 41.667 0.00 0.00 0.00 3.01
783 804 6.458210 CCAAGAAAAAGCATAATCCACAACT 58.542 36.000 0.00 0.00 0.00 3.16
967 988 1.633432 TGACCATCTCAAACCGGGAAT 59.367 47.619 6.32 0.00 0.00 3.01
981 1002 2.758089 GGAATGCCTGAGCTGTGCG 61.758 63.158 0.00 0.00 40.80 5.34
1005 1026 2.661594 TCACAGTTGACGTCGATGAAG 58.338 47.619 12.58 11.27 0.00 3.02
1475 1501 0.108992 ACAAATGCCGCATCTTGCTG 60.109 50.000 19.52 10.73 42.25 4.41
1505 1531 7.945033 AAGTTAACAATGTTGCAATAACTGG 57.055 32.000 17.28 4.17 36.43 4.00
1508 1534 4.178545 ACAATGTTGCAATAACTGGAGC 57.821 40.909 0.59 0.00 0.00 4.70
1517 1543 4.280425 TGCAATAACTGGAGCACATTTTGA 59.720 37.500 0.00 0.00 31.05 2.69
1534 1560 7.285783 CATTTTGATTGAAATGTGCCAGTAG 57.714 36.000 2.94 0.00 40.46 2.57
1535 1561 4.439305 TTGATTGAAATGTGCCAGTAGC 57.561 40.909 0.00 0.00 44.14 3.58
1557 1583 7.986085 AGCATCTTGTTGTGTAATTCTAGTT 57.014 32.000 0.00 0.00 0.00 2.24
1562 1588 7.925993 TCTTGTTGTGTAATTCTAGTTTGGTG 58.074 34.615 0.00 0.00 0.00 4.17
1563 1589 6.627395 TGTTGTGTAATTCTAGTTTGGTGG 57.373 37.500 0.00 0.00 0.00 4.61
1570 1596 2.113860 TCTAGTTTGGTGGCATGAGC 57.886 50.000 0.00 0.00 41.10 4.26
1575 1601 1.134946 GTTTGGTGGCATGAGCATACC 59.865 52.381 0.00 0.00 44.84 2.73
1634 1660 7.023575 ACTTGTGTCGATTTTTGATCTATTGC 58.976 34.615 0.00 0.00 0.00 3.56
1729 1755 1.078143 CTGCTCCTGTGGTAAGGCC 60.078 63.158 0.00 0.00 37.24 5.19
1730 1756 1.841302 CTGCTCCTGTGGTAAGGCCA 61.841 60.000 5.01 0.00 46.95 5.36
1792 1821 3.759086 GGAGGATTTTGACCTTTGAGACC 59.241 47.826 0.00 0.00 37.93 3.85
1896 1925 0.725784 GCTCAATGTTGTTGCCGACG 60.726 55.000 0.00 0.00 0.00 5.12
1937 1966 2.835701 TTCTGATCCGAGCGTGTGCC 62.836 60.000 0.00 0.00 44.31 5.01
1946 1975 2.032071 GCGTGTGCCCCAGTTAGT 59.968 61.111 0.00 0.00 33.98 2.24
1964 1993 3.272574 AGTGGTATGCATTCCTCACTG 57.727 47.619 21.42 0.00 34.65 3.66
1972 2001 1.879372 GCATTCCTCACTGACTGCACA 60.879 52.381 0.00 0.00 39.80 4.57
1973 2002 2.708051 CATTCCTCACTGACTGCACAT 58.292 47.619 0.00 0.00 0.00 3.21
1974 2003 2.174363 TTCCTCACTGACTGCACATG 57.826 50.000 0.00 0.00 0.00 3.21
1975 2004 0.322648 TCCTCACTGACTGCACATGG 59.677 55.000 0.00 0.00 0.00 3.66
1976 2005 0.322648 CCTCACTGACTGCACATGGA 59.677 55.000 0.00 0.00 0.00 3.41
1977 2006 1.065636 CCTCACTGACTGCACATGGAT 60.066 52.381 0.00 0.00 0.00 3.41
1978 2007 2.169144 CCTCACTGACTGCACATGGATA 59.831 50.000 0.00 0.00 0.00 2.59
1979 2008 3.181457 CCTCACTGACTGCACATGGATAT 60.181 47.826 0.00 0.00 0.00 1.63
1980 2009 4.056740 CTCACTGACTGCACATGGATATC 58.943 47.826 0.00 0.00 0.00 1.63
1981 2010 3.708121 TCACTGACTGCACATGGATATCT 59.292 43.478 2.05 0.00 0.00 1.98
1982 2011 4.895297 TCACTGACTGCACATGGATATCTA 59.105 41.667 2.05 0.00 0.00 1.98
1983 2012 4.987285 CACTGACTGCACATGGATATCTAC 59.013 45.833 2.05 0.00 0.00 2.59
1984 2013 4.039730 ACTGACTGCACATGGATATCTACC 59.960 45.833 2.05 0.00 0.00 3.18
1985 2014 3.966665 TGACTGCACATGGATATCTACCA 59.033 43.478 2.05 0.00 41.83 3.25
1986 2015 4.039609 TGACTGCACATGGATATCTACCAG 59.960 45.833 2.05 4.84 40.89 4.00
1987 2016 3.244353 ACTGCACATGGATATCTACCAGC 60.244 47.826 2.05 2.45 40.89 4.85
1988 2017 2.705127 TGCACATGGATATCTACCAGCA 59.295 45.455 2.05 5.02 40.89 4.41
1989 2018 3.136260 TGCACATGGATATCTACCAGCAA 59.864 43.478 2.05 0.00 40.89 3.91
1990 2019 4.202493 TGCACATGGATATCTACCAGCAAT 60.202 41.667 2.05 0.00 40.89 3.56
1991 2020 4.763793 GCACATGGATATCTACCAGCAATT 59.236 41.667 2.05 0.00 40.89 2.32
1992 2021 5.939883 GCACATGGATATCTACCAGCAATTA 59.060 40.000 2.05 0.00 40.89 1.40
1998 2027 9.646522 ATGGATATCTACCAGCAATTACTTTTT 57.353 29.630 2.05 0.00 40.89 1.94
2078 2107 5.163457 GGTTTGAACCTTGACTGAAATTCCA 60.163 40.000 5.66 0.00 45.75 3.53
2079 2108 6.462909 GGTTTGAACCTTGACTGAAATTCCAT 60.463 38.462 5.66 0.00 45.75 3.41
2080 2109 5.710513 TGAACCTTGACTGAAATTCCATG 57.289 39.130 0.00 0.00 0.00 3.66
2081 2110 5.384336 TGAACCTTGACTGAAATTCCATGA 58.616 37.500 0.00 0.00 0.00 3.07
2082 2111 5.474532 TGAACCTTGACTGAAATTCCATGAG 59.525 40.000 0.00 0.00 0.00 2.90
2084 2113 3.129988 CCTTGACTGAAATTCCATGAGGC 59.870 47.826 0.00 0.00 33.74 4.70
2085 2114 2.358957 TGACTGAAATTCCATGAGGCG 58.641 47.619 0.00 0.00 33.74 5.52
2087 2119 0.383231 CTGAAATTCCATGAGGCGCC 59.617 55.000 21.89 21.89 33.74 6.53
2089 2121 0.665298 GAAATTCCATGAGGCGCCTC 59.335 55.000 43.07 43.07 43.01 4.70
2092 2124 0.257039 ATTCCATGAGGCGCCTCTTT 59.743 50.000 46.04 34.05 43.12 2.52
2153 2186 5.913137 TTAGTTGAATGTTAGGGGCAATG 57.087 39.130 0.00 0.00 0.00 2.82
2154 2187 2.497273 AGTTGAATGTTAGGGGCAATGC 59.503 45.455 0.00 0.00 0.00 3.56
2161 2194 0.704076 TTAGGGGCAATGCTGGAGTT 59.296 50.000 4.82 0.00 0.00 3.01
2167 2200 1.251251 GCAATGCTGGAGTTGGTTCT 58.749 50.000 0.00 0.00 0.00 3.01
2179 2212 6.552008 TGGAGTTGGTTCTTTATTCCTGATT 58.448 36.000 0.00 0.00 0.00 2.57
2209 2242 2.037901 TCACCCAAAGCATTGCTGAAA 58.962 42.857 12.82 0.00 39.62 2.69
2213 2246 3.055891 ACCCAAAGCATTGCTGAAATACC 60.056 43.478 12.82 0.00 39.62 2.73
2222 2255 6.040166 AGCATTGCTGAAATACCCTTCTTATG 59.960 38.462 11.09 0.00 37.57 1.90
2227 2260 6.070251 TGCTGAAATACCCTTCTTATGTGAGA 60.070 38.462 0.00 0.00 0.00 3.27
2249 2282 9.907229 TGAGAAACTATACTAATCTGAGTCAGA 57.093 33.333 24.66 24.66 44.99 3.27
2254 2287 8.902540 ACTATACTAATCTGAGTCAGAGAGTG 57.097 38.462 31.96 23.61 44.08 3.51
2263 2296 3.003793 TGAGTCAGAGAGTGTGTTTCTCG 59.996 47.826 0.00 0.00 44.53 4.04
2267 2300 2.728839 CAGAGAGTGTGTTTCTCGAAGC 59.271 50.000 0.00 0.00 44.53 3.86
2276 2309 2.802247 TGTTTCTCGAAGCATGTGTGAG 59.198 45.455 0.00 0.00 0.00 3.51
2278 2311 3.385193 TTCTCGAAGCATGTGTGAGAA 57.615 42.857 13.91 13.91 41.84 2.87
2280 2313 3.059884 TCTCGAAGCATGTGTGAGAAAC 58.940 45.455 0.00 0.00 33.07 2.78
2323 2385 2.909965 GTCGCCCCACTGCCAAAA 60.910 61.111 0.00 0.00 0.00 2.44
2340 2402 4.575885 CCAAAAGATGGGAGTTTACGAGA 58.424 43.478 0.00 0.00 46.27 4.04
2351 2413 6.704493 TGGGAGTTTACGAGACATAATTATGC 59.296 38.462 22.66 15.82 37.19 3.14
2393 2456 7.958583 AGAAGATATAGCCATCTTTCCTCCTAA 59.041 37.037 7.12 0.00 43.66 2.69
2445 2526 6.413892 TGGGAAAAGAAGCAAAATGAGTTTT 58.586 32.000 0.00 0.00 38.03 2.43
2469 2550 5.105716 TGACATTAGACAGCTGGAGTAGAAC 60.106 44.000 19.93 4.55 0.00 3.01
2491 2572 6.639632 ACATCATATACCAAATGCCAGTTC 57.360 37.500 0.00 0.00 0.00 3.01
2492 2573 5.536161 ACATCATATACCAAATGCCAGTTCC 59.464 40.000 0.00 0.00 0.00 3.62
2505 2586 5.798125 TGCCAGTTCCACAAATCAAATTA 57.202 34.783 0.00 0.00 0.00 1.40
2507 2588 5.069648 TGCCAGTTCCACAAATCAAATTACA 59.930 36.000 0.00 0.00 0.00 2.41
2519 2600 9.585099 ACAAATCAAATTACATATTTGCACGAT 57.415 25.926 0.00 0.00 41.06 3.73
2583 2665 3.498018 GGCTGTGTAAAAAGGCCAATTTG 59.502 43.478 5.01 0.00 42.08 2.32
2586 2668 4.698575 TGTGTAAAAAGGCCAATTTGTCC 58.301 39.130 5.01 0.00 0.00 4.02
2596 2678 1.619654 CAATTTGTCCCCTGTCAGCA 58.380 50.000 0.00 0.00 0.00 4.41
2604 2686 0.322008 CCCCTGTCAGCACTCCTTTC 60.322 60.000 0.00 0.00 0.00 2.62
2605 2687 0.689623 CCCTGTCAGCACTCCTTTCT 59.310 55.000 0.00 0.00 0.00 2.52
2606 2688 1.338579 CCCTGTCAGCACTCCTTTCTC 60.339 57.143 0.00 0.00 0.00 2.87
2607 2689 1.338579 CCTGTCAGCACTCCTTTCTCC 60.339 57.143 0.00 0.00 0.00 3.71
2608 2690 1.622811 CTGTCAGCACTCCTTTCTCCT 59.377 52.381 0.00 0.00 0.00 3.69
2609 2691 2.038295 CTGTCAGCACTCCTTTCTCCTT 59.962 50.000 0.00 0.00 0.00 3.36
2611 2693 2.810852 GTCAGCACTCCTTTCTCCTTTG 59.189 50.000 0.00 0.00 0.00 2.77
2615 2719 4.214332 CAGCACTCCTTTCTCCTTTGTAAC 59.786 45.833 0.00 0.00 0.00 2.50
2646 2750 2.035530 GCTGAATGCTGCTACTTCCT 57.964 50.000 0.00 0.00 38.95 3.36
2649 2753 3.497640 GCTGAATGCTGCTACTTCCTATG 59.502 47.826 0.00 0.00 38.95 2.23
2655 2760 7.992608 TGAATGCTGCTACTTCCTATGAAATTA 59.007 33.333 0.00 0.00 0.00 1.40
2670 2775 8.265055 CCTATGAAATTACTGTAGGACTGGAAA 58.735 37.037 0.00 0.00 35.08 3.13
2681 2786 6.115446 TGTAGGACTGGAAATTATTCAGCAG 58.885 40.000 0.00 0.00 37.29 4.24
2705 2810 0.741915 GTGGCCAACAAACCGAGAAA 59.258 50.000 7.24 0.00 0.00 2.52
2735 2840 2.372172 ACTTACAGGACCAGGAAAGGTG 59.628 50.000 0.00 0.00 43.38 4.00
2742 2847 2.550208 GGACCAGGAAAGGTGTACACTG 60.550 54.545 24.55 13.80 43.38 3.66
2750 2855 1.257743 AGGTGTACACTGCTCGACAT 58.742 50.000 24.55 0.00 0.00 3.06
2770 2875 6.253298 CGACATCAAAGCTTTTGTTTTCTGAA 59.747 34.615 15.77 0.00 30.37 3.02
2771 2876 7.043192 CGACATCAAAGCTTTTGTTTTCTGAAT 60.043 33.333 15.77 0.51 30.37 2.57
2772 2877 8.496707 ACATCAAAGCTTTTGTTTTCTGAATT 57.503 26.923 9.53 0.00 30.37 2.17
2798 2903 7.915293 TTATGGTTGTTCCTATAACACTGTG 57.085 36.000 6.19 6.19 37.07 3.66
2832 2937 1.906574 TGCCTTCTTATTCAGGTCGGT 59.093 47.619 0.00 0.00 32.06 4.69
2918 3023 6.179040 AGCTATCTCCAATATTGCCTGAATC 58.821 40.000 10.11 0.00 0.00 2.52
3127 3232 1.889829 CCGAAGAACACTCTCAGACCT 59.110 52.381 0.00 0.00 0.00 3.85
3152 3257 1.344763 GAAGACCCGGATATGGTGGAG 59.655 57.143 0.73 0.00 35.85 3.86
3193 3298 0.994247 ACTCACCCAATCTGATGGCA 59.006 50.000 0.00 0.00 39.26 4.92
3254 3360 5.577945 CACTGAAAAACATGCCATGTATTCC 59.422 40.000 22.98 11.29 44.07 3.01
3326 3436 3.388024 AGCTTTTGTACACACCAGAGAGA 59.612 43.478 0.00 0.00 0.00 3.10
3331 3441 7.482169 TTTTGTACACACCAGAGAGATAGAT 57.518 36.000 0.00 0.00 0.00 1.98
3410 3520 0.966875 TTCGTCGCCTACCCAGCTTA 60.967 55.000 0.00 0.00 0.00 3.09
3437 3547 0.107017 ATCCAAGGCCGAACCATCTG 60.107 55.000 0.00 0.00 43.14 2.90
3649 3759 2.066262 CTTGTAGTGGTTCACGCGAAT 58.934 47.619 15.93 0.00 39.64 3.34
3725 3835 2.759641 TAGTCAGCGACCGGTCCACT 62.760 60.000 28.52 23.83 32.18 4.00
3810 3920 3.589542 CCCCCTCCTTTGGGTGCA 61.590 66.667 0.00 0.00 45.70 4.57
3916 4029 5.533482 CATAGATTTCGTAGGGTTCTCTGG 58.467 45.833 0.00 0.00 0.00 3.86
4107 4220 1.685765 TCCACCAGGTCATCCTCGG 60.686 63.158 0.00 0.00 43.07 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.039703 CGTCTTAACTCGTCACTTTGTCA 58.960 43.478 0.00 0.00 0.00 3.58
1 2 3.121429 GCGTCTTAACTCGTCACTTTGTC 60.121 47.826 0.00 0.00 0.00 3.18
2 3 2.793232 GCGTCTTAACTCGTCACTTTGT 59.207 45.455 0.00 0.00 0.00 2.83
3 4 2.792674 TGCGTCTTAACTCGTCACTTTG 59.207 45.455 0.00 0.00 0.00 2.77
27 28 9.996554 TGAATGAGTAGACTTTATTGAACTTCA 57.003 29.630 0.00 0.00 0.00 3.02
86 87 9.826574 ATTTGTACGAATGAAGCCTACTAAATA 57.173 29.630 7.58 0.00 0.00 1.40
87 88 8.732746 ATTTGTACGAATGAAGCCTACTAAAT 57.267 30.769 7.58 0.00 0.00 1.40
88 89 8.556213 AATTTGTACGAATGAAGCCTACTAAA 57.444 30.769 9.16 0.00 0.00 1.85
101 104 8.483758 AGAGGTTGGACTATAATTTGTACGAAT 58.516 33.333 2.21 2.21 0.00 3.34
127 130 6.100279 TCTCGTGGTTAGTAGGGACTAGAATA 59.900 42.308 0.00 0.00 44.14 1.75
134 137 2.720915 AGTCTCGTGGTTAGTAGGGAC 58.279 52.381 0.00 0.00 0.00 4.46
194 197 6.540189 ACACATAATTTCAGTGAGGCTACATC 59.460 38.462 10.39 0.00 37.05 3.06
207 210 7.022055 ACACACGAAAAGACACATAATTTCA 57.978 32.000 0.00 0.00 32.64 2.69
208 211 7.908193 AACACACGAAAAGACACATAATTTC 57.092 32.000 0.00 0.00 0.00 2.17
210 213 8.399425 TGTTAACACACGAAAAGACACATAATT 58.601 29.630 3.59 0.00 0.00 1.40
214 219 5.804692 TGTTAACACACGAAAAGACACAT 57.195 34.783 3.59 0.00 0.00 3.21
229 234 9.666626 CGTTCTACAATAAACCAAATGTTAACA 57.333 29.630 11.41 11.41 35.67 2.41
268 274 7.792374 AGCTATTTCGCATTCTTTATCTCAA 57.208 32.000 0.00 0.00 0.00 3.02
270 276 9.508567 AAAAAGCTATTTCGCATTCTTTATCTC 57.491 29.630 0.00 0.00 0.00 2.75
282 288 7.361286 CCCTCCTCATATAAAAAGCTATTTCGC 60.361 40.741 0.00 0.00 0.00 4.70
283 289 7.119846 CCCCTCCTCATATAAAAAGCTATTTCG 59.880 40.741 0.00 0.00 0.00 3.46
290 296 4.724279 TCCCCCTCCTCATATAAAAAGC 57.276 45.455 0.00 0.00 0.00 3.51
313 319 2.801679 GCAAATCACAACCAACACCATG 59.198 45.455 0.00 0.00 0.00 3.66
324 330 8.883954 TTATCAATCTTTGTTGCAAATCACAA 57.116 26.923 0.00 0.00 0.00 3.33
325 331 8.883954 TTTATCAATCTTTGTTGCAAATCACA 57.116 26.923 0.00 0.00 0.00 3.58
334 340 7.977293 TCCATCATGCTTTATCAATCTTTGTTG 59.023 33.333 0.00 0.00 0.00 3.33
344 351 5.944135 TCCTTCATCCATCATGCTTTATCA 58.056 37.500 0.00 0.00 31.70 2.15
353 360 6.010850 CCATCATTTCTCCTTCATCCATCAT 58.989 40.000 0.00 0.00 0.00 2.45
357 364 4.684214 CGACCATCATTTCTCCTTCATCCA 60.684 45.833 0.00 0.00 0.00 3.41
360 367 4.760530 TCGACCATCATTTCTCCTTCAT 57.239 40.909 0.00 0.00 0.00 2.57
361 368 4.551702 TTCGACCATCATTTCTCCTTCA 57.448 40.909 0.00 0.00 0.00 3.02
362 369 5.163713 CCTTTTCGACCATCATTTCTCCTTC 60.164 44.000 0.00 0.00 0.00 3.46
371 379 0.999712 ACCCCCTTTTCGACCATCAT 59.000 50.000 0.00 0.00 0.00 2.45
394 402 3.218453 CGTCCATCTACTCATCCTCACT 58.782 50.000 0.00 0.00 0.00 3.41
399 407 2.159099 TGTTGCGTCCATCTACTCATCC 60.159 50.000 0.00 0.00 0.00 3.51
402 410 2.760650 AGATGTTGCGTCCATCTACTCA 59.239 45.455 9.95 0.00 45.46 3.41
424 432 1.228245 GGTGGCAGCTTGAAGTGGA 60.228 57.895 9.90 0.00 0.00 4.02
429 437 0.961019 GTTGATGGTGGCAGCTTGAA 59.039 50.000 18.53 9.28 0.00 2.69
434 442 1.588082 CAAGGTTGATGGTGGCAGC 59.412 57.895 10.30 10.30 0.00 5.25
478 489 0.536006 GTTTGGCAGCAGTGTCTCCT 60.536 55.000 0.00 0.00 0.00 3.69
483 494 3.595758 GCGGTTTGGCAGCAGTGT 61.596 61.111 0.00 0.00 38.20 3.55
491 502 1.227002 TTTTTGTCGGCGGTTTGGC 60.227 52.632 7.21 0.00 40.44 4.52
513 524 6.259829 GGGAAAAGAAAGCATAGTCATCTCTC 59.740 42.308 0.00 0.00 0.00 3.20
514 525 6.069731 AGGGAAAAGAAAGCATAGTCATCTCT 60.070 38.462 0.00 0.00 0.00 3.10
544 555 4.558898 GCTGGATAACGACATCGGAGTATT 60.559 45.833 6.21 0.00 44.95 1.89
553 564 3.055819 ACACTGAAGCTGGATAACGACAT 60.056 43.478 0.00 0.00 0.00 3.06
557 568 2.959516 TGACACTGAAGCTGGATAACG 58.040 47.619 0.00 0.00 0.00 3.18
558 569 6.203723 GGATAATGACACTGAAGCTGGATAAC 59.796 42.308 0.00 0.00 0.00 1.89
559 570 6.126796 TGGATAATGACACTGAAGCTGGATAA 60.127 38.462 0.00 0.00 0.00 1.75
562 573 3.519107 TGGATAATGACACTGAAGCTGGA 59.481 43.478 0.00 0.00 0.00 3.86
563 574 3.877559 TGGATAATGACACTGAAGCTGG 58.122 45.455 0.00 0.00 0.00 4.85
565 576 5.171339 AGTTGGATAATGACACTGAAGCT 57.829 39.130 0.00 0.00 0.00 3.74
566 577 5.886960 AAGTTGGATAATGACACTGAAGC 57.113 39.130 0.00 0.00 0.00 3.86
567 578 7.106239 AGGTAAGTTGGATAATGACACTGAAG 58.894 38.462 0.00 0.00 0.00 3.02
568 579 7.016153 AGGTAAGTTGGATAATGACACTGAA 57.984 36.000 0.00 0.00 0.00 3.02
569 580 6.212589 TGAGGTAAGTTGGATAATGACACTGA 59.787 38.462 0.00 0.00 0.00 3.41
570 581 6.406370 TGAGGTAAGTTGGATAATGACACTG 58.594 40.000 0.00 0.00 0.00 3.66
571 582 6.620877 TGAGGTAAGTTGGATAATGACACT 57.379 37.500 0.00 0.00 0.00 3.55
572 583 7.527457 GTTTGAGGTAAGTTGGATAATGACAC 58.473 38.462 0.00 0.00 0.00 3.67
597 608 3.302480 GCGATTCTGTTGTTATACCTGCG 60.302 47.826 0.00 0.00 0.00 5.18
616 627 4.503714 AAAAGAAGGATTGGATAGGCGA 57.496 40.909 0.00 0.00 0.00 5.54
618 629 7.881775 TTCTAAAAAGAAGGATTGGATAGGC 57.118 36.000 0.00 0.00 0.00 3.93
638 649 3.844211 AGCTGTTGGGATTGTACCTTCTA 59.156 43.478 0.00 0.00 0.00 2.10
651 662 2.749621 GGTGACATCTTAAGCTGTTGGG 59.250 50.000 12.92 0.00 0.00 4.12
671 682 7.331791 GCTAGTACATCAATAATTCTAGGGGG 58.668 42.308 0.00 0.00 0.00 5.40
673 684 8.140112 AGGCTAGTACATCAATAATTCTAGGG 57.860 38.462 0.00 0.00 0.00 3.53
765 786 7.962441 AGGTTTAAGTTGTGGATTATGCTTTT 58.038 30.769 0.00 0.00 0.00 2.27
769 790 7.328493 GTCAAAGGTTTAAGTTGTGGATTATGC 59.672 37.037 0.00 0.00 0.00 3.14
777 798 8.542132 CAATCAATGTCAAAGGTTTAAGTTGTG 58.458 33.333 0.00 0.00 0.00 3.33
981 1002 0.666274 TCGACGTCAACTGTGATGCC 60.666 55.000 17.16 0.00 43.54 4.40
984 1005 3.245797 CTTCATCGACGTCAACTGTGAT 58.754 45.455 17.16 5.97 35.80 3.06
1005 1026 4.191015 GGGATGGAACGGAGGGGC 62.191 72.222 0.00 0.00 0.00 5.80
1041 1062 1.151908 TTTGAGTTGGGGAACGGGG 59.848 57.895 0.00 0.00 0.00 5.73
1305 1326 1.213013 GAAGAACTCGCGAGGCAGA 59.787 57.895 36.93 1.25 0.00 4.26
1475 1501 7.656707 ATTGCAACATTGTTAACTTTGATCC 57.343 32.000 0.00 0.00 0.00 3.36
1529 1555 7.369803 AGAATTACACAACAAGATGCTACTG 57.630 36.000 0.00 0.00 0.00 2.74
1530 1556 8.314751 ACTAGAATTACACAACAAGATGCTACT 58.685 33.333 0.00 0.00 0.00 2.57
1531 1557 8.480643 ACTAGAATTACACAACAAGATGCTAC 57.519 34.615 0.00 0.00 0.00 3.58
1532 1558 9.502091 AAACTAGAATTACACAACAAGATGCTA 57.498 29.630 0.00 0.00 0.00 3.49
1533 1559 7.986085 AACTAGAATTACACAACAAGATGCT 57.014 32.000 0.00 0.00 0.00 3.79
1534 1560 7.538678 CCAAACTAGAATTACACAACAAGATGC 59.461 37.037 0.00 0.00 0.00 3.91
1535 1561 8.567948 ACCAAACTAGAATTACACAACAAGATG 58.432 33.333 0.00 0.00 0.00 2.90
1539 1565 6.460399 GCCACCAAACTAGAATTACACAACAA 60.460 38.462 0.00 0.00 0.00 2.83
1541 1567 5.009210 TGCCACCAAACTAGAATTACACAAC 59.991 40.000 0.00 0.00 0.00 3.32
1557 1583 0.625316 AGGTATGCTCATGCCACCAA 59.375 50.000 17.19 0.00 44.72 3.67
1562 1588 5.767168 AGAAGAAATAAGGTATGCTCATGCC 59.233 40.000 8.67 8.67 42.94 4.40
1563 1589 6.484643 TGAGAAGAAATAAGGTATGCTCATGC 59.515 38.462 0.00 0.00 40.20 4.06
1575 1601 9.213799 ACTCTGCTAAGTTTGAGAAGAAATAAG 57.786 33.333 0.00 0.00 27.63 1.73
1634 1660 3.341823 CTCCACCTGAAACCAAGATGAG 58.658 50.000 0.00 0.00 0.00 2.90
1729 1755 2.880268 TCAACAATGACAGGAAGCACTG 59.120 45.455 2.07 2.07 44.03 3.66
1730 1756 3.213206 TCAACAATGACAGGAAGCACT 57.787 42.857 0.00 0.00 0.00 4.40
1792 1821 0.602905 AACGAGGAAAACCTCAGCGG 60.603 55.000 15.13 3.03 36.70 5.52
1809 1838 4.336993 TGGTCCAAACTACAACACATGAAC 59.663 41.667 0.00 0.00 0.00 3.18
1896 1925 3.453679 AGCTCCGACGCCCTCTTC 61.454 66.667 0.00 0.00 0.00 2.87
1937 1966 3.117888 AGGAATGCATACCACTAACTGGG 60.118 47.826 0.00 0.00 45.78 4.45
1946 1975 2.840038 AGTCAGTGAGGAATGCATACCA 59.160 45.455 0.00 0.00 0.00 3.25
1964 1993 4.564041 CTGGTAGATATCCATGTGCAGTC 58.436 47.826 0.00 0.00 34.26 3.51
1972 2001 9.646522 AAAAAGTAATTGCTGGTAGATATCCAT 57.353 29.630 0.00 0.00 34.26 3.41
1998 2027 8.779354 TGTTGTTAGTACATATGTGCATGTAA 57.221 30.769 23.49 12.00 41.74 2.41
2034 2063 4.959080 ACCAAATCACCCCAAATCCTTAT 58.041 39.130 0.00 0.00 0.00 1.73
2035 2064 4.412060 ACCAAATCACCCCAAATCCTTA 57.588 40.909 0.00 0.00 0.00 2.69
2153 2186 4.156739 CAGGAATAAAGAACCAACTCCAGC 59.843 45.833 0.00 0.00 0.00 4.85
2154 2187 5.560724 TCAGGAATAAAGAACCAACTCCAG 58.439 41.667 0.00 0.00 0.00 3.86
2186 2219 1.614903 CAGCAATGCTTTGGGTGAAGA 59.385 47.619 4.36 0.00 36.40 2.87
2195 2228 4.774200 AGAAGGGTATTTCAGCAATGCTTT 59.226 37.500 4.36 0.00 36.40 3.51
2198 2231 4.725790 AAGAAGGGTATTTCAGCAATGC 57.274 40.909 0.00 0.00 0.00 3.56
2222 2255 9.944663 CTGACTCAGATTAGTATAGTTTCTCAC 57.055 37.037 0.00 0.00 32.44 3.51
2227 2260 9.914834 ACTCTCTGACTCAGATTAGTATAGTTT 57.085 33.333 16.99 0.00 39.92 2.66
2234 2267 5.321102 ACACACTCTCTGACTCAGATTAGT 58.679 41.667 9.26 12.36 39.92 2.24
2246 2279 2.728839 GCTTCGAGAAACACACTCTCTG 59.271 50.000 0.00 0.00 37.72 3.35
2249 2282 2.890808 TGCTTCGAGAAACACACTCT 57.109 45.000 0.00 0.00 32.87 3.24
2254 2287 2.543848 TCACACATGCTTCGAGAAACAC 59.456 45.455 0.00 0.00 0.00 3.32
2263 2296 6.486253 TTCTATGTTTCTCACACATGCTTC 57.514 37.500 0.00 0.00 38.61 3.86
2267 2300 9.467258 AAACAAATTCTATGTTTCTCACACATG 57.533 29.630 1.68 0.00 45.27 3.21
2323 2385 6.732896 ATTATGTCTCGTAAACTCCCATCT 57.267 37.500 0.00 0.00 0.00 2.90
2337 2399 5.119898 CCTCTTGCTCGCATAATTATGTCTC 59.880 44.000 23.14 12.46 36.11 3.36
2340 2402 4.960938 TCCTCTTGCTCGCATAATTATGT 58.039 39.130 23.14 0.00 36.11 2.29
2351 2413 4.377839 TCTTCTATGTTCCTCTTGCTCG 57.622 45.455 0.00 0.00 0.00 5.03
2437 2518 5.413833 CCAGCTGTCTAATGTCAAAACTCAT 59.586 40.000 13.81 0.00 0.00 2.90
2445 2526 4.600062 TCTACTCCAGCTGTCTAATGTCA 58.400 43.478 13.81 0.00 0.00 3.58
2446 2527 5.105716 TGTTCTACTCCAGCTGTCTAATGTC 60.106 44.000 13.81 0.00 0.00 3.06
2469 2550 5.535783 TGGAACTGGCATTTGGTATATGATG 59.464 40.000 0.00 0.00 0.00 3.07
2491 2572 8.109391 CGTGCAAATATGTAATTTGATTTGTGG 58.891 33.333 13.22 0.00 40.06 4.17
2492 2573 8.858186 TCGTGCAAATATGTAATTTGATTTGTG 58.142 29.630 13.22 0.76 40.06 3.33
2505 2586 8.623903 AGAACATCATTTATCGTGCAAATATGT 58.376 29.630 0.00 0.00 30.11 2.29
2519 2600 9.462174 CAGTTTGCTACAAAAGAACATCATTTA 57.538 29.630 0.00 0.00 0.00 1.40
2527 2609 6.033513 GTGTTGTCAGTTTGCTACAAAAGAAC 59.966 38.462 0.00 0.00 35.08 3.01
2556 2638 3.536570 GGCCTTTTTACACAGCCAAAAA 58.463 40.909 0.00 0.00 43.32 1.94
2583 2665 1.484444 AAGGAGTGCTGACAGGGGAC 61.484 60.000 4.26 0.00 0.00 4.46
2586 2668 0.689623 AGAAAGGAGTGCTGACAGGG 59.310 55.000 4.26 0.00 0.00 4.45
2596 2678 6.441088 AGATGTTACAAAGGAGAAAGGAGT 57.559 37.500 0.00 0.00 0.00 3.85
2604 2686 6.876257 AGCTCAAACTAGATGTTACAAAGGAG 59.124 38.462 0.00 0.00 38.03 3.69
2605 2687 6.650807 CAGCTCAAACTAGATGTTACAAAGGA 59.349 38.462 0.00 0.00 38.03 3.36
2606 2688 6.650807 TCAGCTCAAACTAGATGTTACAAAGG 59.349 38.462 0.00 0.00 38.03 3.11
2607 2689 7.658179 TCAGCTCAAACTAGATGTTACAAAG 57.342 36.000 0.00 0.00 38.03 2.77
2608 2690 8.506437 CATTCAGCTCAAACTAGATGTTACAAA 58.494 33.333 0.00 0.00 38.03 2.83
2609 2691 7.361201 GCATTCAGCTCAAACTAGATGTTACAA 60.361 37.037 0.00 0.00 37.91 2.41
2611 2693 6.481984 GCATTCAGCTCAAACTAGATGTTAC 58.518 40.000 0.00 0.00 37.91 2.50
2636 2740 8.421784 CCTACAGTAATTTCATAGGAAGTAGCA 58.578 37.037 6.59 0.00 35.38 3.49
2645 2749 9.838339 ATTTCCAGTCCTACAGTAATTTCATAG 57.162 33.333 0.00 0.00 0.00 2.23
2655 2760 6.116126 GCTGAATAATTTCCAGTCCTACAGT 58.884 40.000 0.00 0.00 0.00 3.55
2670 2775 1.290203 CCACGACGCTGCTGAATAAT 58.710 50.000 0.00 0.00 0.00 1.28
2681 2786 2.353030 GTTTGTTGGCCACGACGC 60.353 61.111 3.88 0.00 33.43 5.19
2735 2840 2.092838 GCTTTGATGTCGAGCAGTGTAC 59.907 50.000 0.00 0.00 36.45 2.90
2742 2847 3.273919 ACAAAAGCTTTGATGTCGAGC 57.726 42.857 13.54 0.00 36.68 5.03
2772 2877 9.607988 CACAGTGTTATAGGAACAACCATAATA 57.392 33.333 0.00 0.00 42.04 0.98
2798 2903 5.948992 AAGAAGGCAAGAACAGTTATGAC 57.051 39.130 3.28 0.29 0.00 3.06
2918 3023 2.340337 TGCATTGACGACATCTGACAG 58.660 47.619 0.00 0.00 0.00 3.51
3152 3257 2.029290 TGTTAAGGCCGAGTCACTCTTC 60.029 50.000 2.61 0.00 0.00 2.87
3331 3441 7.748691 TGAAAACATGATCAAGAGACATTGA 57.251 32.000 4.68 0.00 43.04 2.57
3410 3520 2.230130 TCGGCCTTGGATTTGGAAAT 57.770 45.000 0.00 0.00 0.00 2.17
3649 3759 1.514678 AAGCAAATGGAGCACGCGAA 61.515 50.000 15.93 0.00 0.00 4.70
3916 4029 0.539051 CTCTCCACACTGGGTCCATC 59.461 60.000 0.00 0.00 38.32 3.51
4004 4117 3.826754 CTAGAGGCCGCGCTGTCA 61.827 66.667 6.12 0.00 0.00 3.58
4007 4120 2.564553 AAACTCTAGAGGCCGCGCTG 62.565 60.000 23.50 0.00 0.00 5.18
4107 4220 0.796312 TACGTCTACGACAACGGGAC 59.204 55.000 9.86 0.00 42.99 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.