Multiple sequence alignment - TraesCS6A01G322400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G322400 chr6A 100.000 5275 0 0 1 5275 556525794 556531068 0.000000e+00 9742
1 TraesCS6A01G322400 chr6B 90.945 3843 255 54 696 4503 618936197 618939981 0.000000e+00 5083
2 TraesCS6A01G322400 chr6B 92.032 502 27 12 4573 5069 618939998 618940491 0.000000e+00 693
3 TraesCS6A01G322400 chr6B 92.276 246 15 3 425 667 476045149 476045393 3.910000e-91 346
4 TraesCS6A01G322400 chr6B 89.352 216 10 5 5068 5275 618941769 618941979 5.240000e-65 259
5 TraesCS6A01G322400 chr6D 92.674 1870 89 22 1417 3267 411611013 411612853 0.000000e+00 2651
6 TraesCS6A01G322400 chr6D 93.272 1189 52 17 3322 4503 411613204 411614371 0.000000e+00 1727
7 TraesCS6A01G322400 chr6D 91.873 726 40 11 696 1416 411610271 411610982 0.000000e+00 996
8 TraesCS6A01G322400 chr6D 90.254 708 53 12 4573 5275 411614388 411615084 0.000000e+00 911
9 TraesCS6A01G322400 chr6D 89.044 429 43 4 1 427 411609804 411610230 3.620000e-146 529
10 TraesCS6A01G322400 chr2D 85.305 837 79 22 2135 2939 545942587 545941763 0.000000e+00 824
11 TraesCS6A01G322400 chr2D 89.408 642 60 6 2942 3578 545941721 545941083 0.000000e+00 802
12 TraesCS6A01G322400 chr2D 82.638 599 72 16 4694 5275 396668696 396669279 7.890000e-138 501
13 TraesCS6A01G322400 chr2D 82.931 580 68 21 1565 2127 545943282 545942717 1.320000e-135 494
14 TraesCS6A01G322400 chr2D 86.486 259 31 3 962 1220 545943806 545943552 1.120000e-71 281
15 TraesCS6A01G322400 chr2D 83.913 230 22 4 4055 4283 545940628 545940413 6.920000e-49 206
16 TraesCS6A01G322400 chr2A 85.679 810 75 24 2159 2939 687004286 687003489 0.000000e+00 815
17 TraesCS6A01G322400 chr2A 88.509 644 62 10 2942 3578 687003449 687002811 0.000000e+00 769
18 TraesCS6A01G322400 chr2A 83.139 599 69 16 4694 5275 534630852 534631435 7.830000e-143 518
19 TraesCS6A01G322400 chr2A 82.211 579 56 21 1671 2217 687004885 687004322 6.230000e-124 455
20 TraesCS6A01G322400 chr2B 89.392 641 61 5 2942 3578 652619921 652619284 0.000000e+00 800
21 TraesCS6A01G322400 chr2B 83.579 542 58 18 4753 5275 470064953 470065482 3.700000e-131 479
22 TraesCS6A01G322400 chr2B 85.339 457 53 6 2495 2939 652620417 652619963 1.340000e-125 460
23 TraesCS6A01G322400 chr2B 86.420 243 31 2 978 1220 652620759 652620519 1.130000e-66 265
24 TraesCS6A01G322400 chr2B 82.174 230 26 4 4055 4283 652618703 652618488 3.240000e-42 183
25 TraesCS6A01G322400 chr2B 79.747 158 23 8 15 169 789567744 789567593 7.220000e-19 106
26 TraesCS6A01G322400 chr3D 91.498 247 19 2 423 667 603709017 603709263 6.540000e-89 339
27 TraesCS6A01G322400 chr1B 91.129 248 20 2 422 667 411449405 411449652 8.460000e-88 335
28 TraesCS6A01G322400 chr1B 90.400 250 22 2 420 667 358061733 358061982 1.420000e-85 327
29 TraesCS6A01G322400 chr1B 88.722 266 26 4 404 665 647545339 647545074 6.590000e-84 322
30 TraesCS6A01G322400 chr1B 84.314 204 31 1 3373 3576 360872285 360872083 1.160000e-46 198
31 TraesCS6A01G322400 chr7B 91.093 247 20 2 423 667 583458304 583458550 3.040000e-87 333
32 TraesCS6A01G322400 chr5B 91.429 245 17 4 425 667 125270443 125270685 3.040000e-87 333
33 TraesCS6A01G322400 chr3B 91.057 246 20 2 424 667 754259809 754259564 1.090000e-86 331
34 TraesCS6A01G322400 chr1A 91.020 245 20 2 425 667 461783961 461784205 3.940000e-86 329
35 TraesCS6A01G322400 chr1A 83.824 204 32 1 3373 3576 561151158 561150956 5.390000e-45 193
36 TraesCS6A01G322400 chr4A 84.804 204 30 1 3373 3576 707065271 707065473 2.490000e-48 204


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G322400 chr6A 556525794 556531068 5274 False 9742.000000 9742 100.000000 1 5275 1 chr6A.!!$F1 5274
1 TraesCS6A01G322400 chr6B 618936197 618941979 5782 False 2011.666667 5083 90.776333 696 5275 3 chr6B.!!$F2 4579
2 TraesCS6A01G322400 chr6D 411609804 411615084 5280 False 1362.800000 2651 91.423400 1 5275 5 chr6D.!!$F1 5274
3 TraesCS6A01G322400 chr2D 545940413 545943806 3393 True 521.400000 824 85.608600 962 4283 5 chr2D.!!$R1 3321
4 TraesCS6A01G322400 chr2D 396668696 396669279 583 False 501.000000 501 82.638000 4694 5275 1 chr2D.!!$F1 581
5 TraesCS6A01G322400 chr2A 687002811 687004885 2074 True 679.666667 815 85.466333 1671 3578 3 chr2A.!!$R1 1907
6 TraesCS6A01G322400 chr2A 534630852 534631435 583 False 518.000000 518 83.139000 4694 5275 1 chr2A.!!$F1 581
7 TraesCS6A01G322400 chr2B 470064953 470065482 529 False 479.000000 479 83.579000 4753 5275 1 chr2B.!!$F1 522
8 TraesCS6A01G322400 chr2B 652618488 652620759 2271 True 427.000000 800 85.831250 978 4283 4 chr2B.!!$R2 3305

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
47 48 0.032117 ATGTGTCTCCGGGGATCTCA 60.032 55.0 7.65 9.17 0.00 3.27 F
48 49 0.032117 TGTGTCTCCGGGGATCTCAT 60.032 55.0 7.65 0.00 0.00 2.90 F
801 805 0.033109 GCCTAGGGCTTGAATTGGGT 60.033 55.0 11.72 0.00 46.69 4.51 F
1263 1271 0.249031 GTTTGGTGACAGCTTGTGGC 60.249 55.0 6.17 0.00 44.54 5.01 F
2677 2904 0.546267 ATCTGAGGGGTGAGCACACT 60.546 55.0 14.08 0.03 45.32 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1697 1760 0.401356 TCACCTCAAAGAGCCATGCA 59.599 50.000 0.0 0.0 0.00 3.96 R
2041 2110 2.359900 GATGTGAGAACATGGACACCC 58.640 52.381 0.0 0.0 33.08 4.61 R
2798 3039 3.066900 ACTTAGTGCCAGCATACTCGTAG 59.933 47.826 0.0 0.0 0.00 3.51 R
2974 3253 4.216257 GGCAATGTATGTCAGTGTCAAACT 59.784 41.667 0.0 0.0 44.63 2.66 R
4564 5311 0.106116 ATGACTCCCTACCTCCGTCC 60.106 60.000 0.0 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.127567 TCCCCCATCATTAGAGGGCG 61.128 60.000 0.00 0.00 44.28 6.13
28 29 0.824109 CATTAGAGGGCGTGTGGAGA 59.176 55.000 0.00 0.00 0.00 3.71
42 43 4.356979 GAGATGTGTCTCCGGGGA 57.643 61.111 0.00 0.00 44.20 4.81
43 44 2.827715 GAGATGTGTCTCCGGGGAT 58.172 57.895 7.65 0.00 44.20 3.85
44 45 0.676736 GAGATGTGTCTCCGGGGATC 59.323 60.000 7.65 0.00 44.20 3.36
45 46 0.263172 AGATGTGTCTCCGGGGATCT 59.737 55.000 7.65 2.54 0.00 2.75
46 47 0.676736 GATGTGTCTCCGGGGATCTC 59.323 60.000 7.65 3.08 0.00 2.75
47 48 0.032117 ATGTGTCTCCGGGGATCTCA 60.032 55.000 7.65 9.17 0.00 3.27
48 49 0.032117 TGTGTCTCCGGGGATCTCAT 60.032 55.000 7.65 0.00 0.00 2.90
68 70 4.402155 TCATGGGATTCAGTTGGTATTTGC 59.598 41.667 0.00 0.00 0.00 3.68
74 76 3.410631 TCAGTTGGTATTTGCCTTCGA 57.589 42.857 0.00 0.00 0.00 3.71
83 85 0.251916 TTTGCCTTCGATGGATCCGT 59.748 50.000 20.87 6.04 0.00 4.69
84 86 0.461870 TTGCCTTCGATGGATCCGTG 60.462 55.000 20.87 4.14 0.00 4.94
105 107 1.066002 TGGATCCGGTATTCGTTCGTC 59.934 52.381 7.39 0.00 37.11 4.20
108 110 0.179156 TCCGGTATTCGTTCGTCTGC 60.179 55.000 0.00 0.00 37.11 4.26
120 122 0.313987 TCGTCTGCGTTCATGTGTCT 59.686 50.000 0.00 0.00 39.49 3.41
121 123 1.538075 TCGTCTGCGTTCATGTGTCTA 59.462 47.619 0.00 0.00 39.49 2.59
122 124 2.163613 TCGTCTGCGTTCATGTGTCTAT 59.836 45.455 0.00 0.00 39.49 1.98
129 131 3.002656 GCGTTCATGTGTCTATGGATTGG 59.997 47.826 0.00 0.00 0.00 3.16
140 142 3.973973 TCTATGGATTGGTTCCTTCCGAT 59.026 43.478 0.00 0.00 45.68 4.18
158 160 4.124970 CCGATCATTGCTTCTCTTCATCA 58.875 43.478 0.00 0.00 0.00 3.07
163 165 6.829229 TCATTGCTTCTCTTCATCAACAAT 57.171 33.333 0.00 0.00 0.00 2.71
164 166 6.617879 TCATTGCTTCTCTTCATCAACAATG 58.382 36.000 0.00 0.00 42.67 2.82
181 183 3.684981 ACAATGGTTGTTGGCTTTTGCAT 60.685 39.130 0.00 0.00 44.53 3.96
196 198 5.437289 TTTTGCATGATGACTTTTCGACT 57.563 34.783 0.00 0.00 0.00 4.18
203 205 6.509199 GCATGATGACTTTTCGACTGTCTATG 60.509 42.308 6.21 12.39 0.00 2.23
221 223 2.410466 GGCAACAAGGTTTGTCCGA 58.590 52.632 0.00 0.00 44.59 4.55
233 235 3.429135 GGTTTGTCCGACTCCTATGAGAC 60.429 52.174 1.64 0.00 41.42 3.36
235 237 3.081710 TGTCCGACTCCTATGAGACAA 57.918 47.619 1.64 0.00 41.42 3.18
237 239 2.359531 GTCCGACTCCTATGAGACAAGG 59.640 54.545 1.64 0.48 41.42 3.61
247 249 1.627864 TGAGACAAGGGTGATGACGA 58.372 50.000 0.00 0.00 0.00 4.20
250 252 0.242825 GACAAGGGTGATGACGACGA 59.757 55.000 0.00 0.00 0.00 4.20
254 256 1.176619 AGGGTGATGACGACGACACA 61.177 55.000 0.00 0.14 35.33 3.72
256 258 1.007336 GGTGATGACGACGACACACC 61.007 60.000 23.67 23.67 40.33 4.16
260 262 0.671796 ATGACGACGACACACCTTCA 59.328 50.000 0.00 0.00 0.00 3.02
264 266 1.129326 CGACGACACACCTTCAACTC 58.871 55.000 0.00 0.00 0.00 3.01
273 275 3.069586 CACACCTTCAACTCACTCCAGTA 59.930 47.826 0.00 0.00 0.00 2.74
286 288 1.154016 CCAGTACTGGCAGTCGTCG 60.154 63.158 28.48 11.09 44.73 5.12
297 299 2.045131 AGTCGTCGCTAGGTGGTCC 61.045 63.158 0.00 0.00 0.00 4.46
307 309 0.613572 TAGGTGGTCCACGAGCATGA 60.614 55.000 15.93 0.00 42.05 3.07
433 436 7.944729 AAAAACATTACTGCATACTCCATCT 57.055 32.000 0.00 0.00 0.00 2.90
434 437 6.932356 AAACATTACTGCATACTCCATCTG 57.068 37.500 0.00 0.00 0.00 2.90
436 439 5.605534 ACATTACTGCATACTCCATCTGTC 58.394 41.667 0.00 0.00 0.00 3.51
437 440 4.672587 TTACTGCATACTCCATCTGTCC 57.327 45.455 0.00 0.00 0.00 4.02
440 443 4.290093 ACTGCATACTCCATCTGTCCTTA 58.710 43.478 0.00 0.00 0.00 2.69
441 444 4.716784 ACTGCATACTCCATCTGTCCTTAA 59.283 41.667 0.00 0.00 0.00 1.85
442 445 5.189736 ACTGCATACTCCATCTGTCCTTAAA 59.810 40.000 0.00 0.00 0.00 1.52
446 449 6.407525 GCATACTCCATCTGTCCTTAAAGAGT 60.408 42.308 0.00 0.00 37.18 3.24
447 450 5.413309 ACTCCATCTGTCCTTAAAGAGTG 57.587 43.478 0.00 0.00 32.37 3.51
448 451 4.187694 CTCCATCTGTCCTTAAAGAGTGC 58.812 47.826 0.00 0.00 0.00 4.40
450 453 3.686726 CCATCTGTCCTTAAAGAGTGCAC 59.313 47.826 9.40 9.40 0.00 4.57
451 454 4.564406 CCATCTGTCCTTAAAGAGTGCACT 60.564 45.833 21.88 21.88 0.00 4.40
452 455 4.689612 TCTGTCCTTAAAGAGTGCACTT 57.310 40.909 22.65 7.90 0.00 3.16
453 456 4.632153 TCTGTCCTTAAAGAGTGCACTTC 58.368 43.478 22.65 14.01 0.00 3.01
454 457 3.740115 TGTCCTTAAAGAGTGCACTTCC 58.260 45.455 22.65 9.32 0.00 3.46
455 458 3.135712 TGTCCTTAAAGAGTGCACTTCCA 59.864 43.478 22.65 4.00 0.00 3.53
456 459 4.134563 GTCCTTAAAGAGTGCACTTCCAA 58.865 43.478 22.65 11.71 0.00 3.53
458 461 5.241728 GTCCTTAAAGAGTGCACTTCCAATT 59.758 40.000 22.65 13.56 0.00 2.32
460 463 6.323739 TCCTTAAAGAGTGCACTTCCAATTTT 59.676 34.615 22.65 15.64 0.00 1.82
461 464 6.421801 CCTTAAAGAGTGCACTTCCAATTTTG 59.578 38.462 22.65 12.13 0.00 2.44
463 466 5.343307 AAGAGTGCACTTCCAATTTTGTT 57.657 34.783 22.65 0.00 0.00 2.83
466 469 5.827797 AGAGTGCACTTCCAATTTTGTTAGA 59.172 36.000 22.65 0.00 0.00 2.10
467 470 6.016777 AGAGTGCACTTCCAATTTTGTTAGAG 60.017 38.462 22.65 0.00 0.00 2.43
468 471 5.010012 AGTGCACTTCCAATTTTGTTAGAGG 59.990 40.000 15.25 0.00 0.00 3.69
469 472 4.280677 TGCACTTCCAATTTTGTTAGAGGG 59.719 41.667 0.00 0.00 0.00 4.30
470 473 4.280929 GCACTTCCAATTTTGTTAGAGGGT 59.719 41.667 0.00 0.00 0.00 4.34
471 474 5.564848 GCACTTCCAATTTTGTTAGAGGGTC 60.565 44.000 0.00 0.00 0.00 4.46
472 475 5.534654 CACTTCCAATTTTGTTAGAGGGTCA 59.465 40.000 0.00 0.00 0.00 4.02
473 476 6.040391 CACTTCCAATTTTGTTAGAGGGTCAA 59.960 38.462 0.00 0.00 0.00 3.18
474 477 6.609616 ACTTCCAATTTTGTTAGAGGGTCAAA 59.390 34.615 0.00 0.00 0.00 2.69
475 478 6.399639 TCCAATTTTGTTAGAGGGTCAAAC 57.600 37.500 0.00 0.00 32.08 2.93
476 479 6.133356 TCCAATTTTGTTAGAGGGTCAAACT 58.867 36.000 0.00 0.00 32.08 2.66
477 480 7.291566 TCCAATTTTGTTAGAGGGTCAAACTA 58.708 34.615 0.00 0.00 32.08 2.24
478 481 7.947890 TCCAATTTTGTTAGAGGGTCAAACTAT 59.052 33.333 0.00 0.00 32.08 2.12
479 482 8.244113 CCAATTTTGTTAGAGGGTCAAACTATC 58.756 37.037 0.00 0.00 32.08 2.08
480 483 9.014297 CAATTTTGTTAGAGGGTCAAACTATCT 57.986 33.333 0.00 0.00 32.08 1.98
481 484 8.794335 ATTTTGTTAGAGGGTCAAACTATCTC 57.206 34.615 0.00 0.00 32.08 2.75
482 485 6.928348 TTGTTAGAGGGTCAAACTATCTCA 57.072 37.500 0.00 0.00 0.00 3.27
483 486 6.928348 TGTTAGAGGGTCAAACTATCTCAA 57.072 37.500 0.00 0.00 0.00 3.02
484 487 7.311092 TGTTAGAGGGTCAAACTATCTCAAA 57.689 36.000 0.00 0.00 0.00 2.69
485 488 7.386851 TGTTAGAGGGTCAAACTATCTCAAAG 58.613 38.462 0.00 0.00 0.00 2.77
486 489 7.016268 TGTTAGAGGGTCAAACTATCTCAAAGT 59.984 37.037 0.00 0.00 0.00 2.66
487 490 6.441088 AGAGGGTCAAACTATCTCAAAGTT 57.559 37.500 0.00 0.00 38.82 2.66
488 491 6.842676 AGAGGGTCAAACTATCTCAAAGTTT 58.157 36.000 0.00 0.00 45.64 2.66
495 498 6.787085 AAACTATCTCAAAGTTTGACCGAG 57.213 37.500 14.35 12.69 43.66 4.63
496 499 5.470047 ACTATCTCAAAGTTTGACCGAGT 57.530 39.130 14.35 13.26 35.46 4.18
497 500 5.855045 ACTATCTCAAAGTTTGACCGAGTT 58.145 37.500 14.35 3.34 35.46 3.01
498 501 6.289064 ACTATCTCAAAGTTTGACCGAGTTT 58.711 36.000 14.35 0.45 35.46 2.66
499 502 4.875544 TCTCAAAGTTTGACCGAGTTTG 57.124 40.909 14.35 2.86 38.28 2.93
500 503 4.258543 TCTCAAAGTTTGACCGAGTTTGT 58.741 39.130 14.35 0.00 38.17 2.83
501 504 4.094294 TCTCAAAGTTTGACCGAGTTTGTG 59.906 41.667 14.35 1.47 38.17 3.33
502 505 3.754323 TCAAAGTTTGACCGAGTTTGTGT 59.246 39.130 14.35 0.00 38.17 3.72
503 506 4.936411 TCAAAGTTTGACCGAGTTTGTGTA 59.064 37.500 14.35 0.00 38.17 2.90
504 507 5.064198 TCAAAGTTTGACCGAGTTTGTGTAG 59.936 40.000 14.35 0.00 38.17 2.74
505 508 4.395959 AGTTTGACCGAGTTTGTGTAGA 57.604 40.909 0.00 0.00 0.00 2.59
506 509 4.761975 AGTTTGACCGAGTTTGTGTAGAA 58.238 39.130 0.00 0.00 0.00 2.10
507 510 5.180271 AGTTTGACCGAGTTTGTGTAGAAA 58.820 37.500 0.00 0.00 0.00 2.52
508 511 5.820947 AGTTTGACCGAGTTTGTGTAGAAAT 59.179 36.000 0.00 0.00 0.00 2.17
509 512 6.987992 AGTTTGACCGAGTTTGTGTAGAAATA 59.012 34.615 0.00 0.00 0.00 1.40
510 513 7.660208 AGTTTGACCGAGTTTGTGTAGAAATAT 59.340 33.333 0.00 0.00 0.00 1.28
511 514 8.928733 GTTTGACCGAGTTTGTGTAGAAATATA 58.071 33.333 0.00 0.00 0.00 0.86
512 515 9.661563 TTTGACCGAGTTTGTGTAGAAATATAT 57.338 29.630 0.00 0.00 0.00 0.86
513 516 9.661563 TTGACCGAGTTTGTGTAGAAATATATT 57.338 29.630 0.00 0.00 0.00 1.28
536 539 5.806654 AATGTTTGTGAAGCCAAATAGGT 57.193 34.783 0.00 0.00 40.61 3.08
537 540 6.909550 AATGTTTGTGAAGCCAAATAGGTA 57.090 33.333 0.00 0.00 40.61 3.08
538 541 7.480760 AATGTTTGTGAAGCCAAATAGGTAT 57.519 32.000 0.00 0.00 40.61 2.73
539 542 8.588290 AATGTTTGTGAAGCCAAATAGGTATA 57.412 30.769 0.00 0.00 40.61 1.47
540 543 8.766994 ATGTTTGTGAAGCCAAATAGGTATAT 57.233 30.769 0.00 0.00 40.61 0.86
541 544 7.995289 TGTTTGTGAAGCCAAATAGGTATATG 58.005 34.615 0.00 0.00 40.61 1.78
542 545 7.831690 TGTTTGTGAAGCCAAATAGGTATATGA 59.168 33.333 0.00 0.00 40.61 2.15
543 546 8.850156 GTTTGTGAAGCCAAATAGGTATATGAT 58.150 33.333 0.00 0.00 40.61 2.45
544 547 7.984422 TGTGAAGCCAAATAGGTATATGATG 57.016 36.000 0.00 0.00 40.61 3.07
545 548 7.744733 TGTGAAGCCAAATAGGTATATGATGA 58.255 34.615 0.00 0.00 40.61 2.92
546 549 8.217111 TGTGAAGCCAAATAGGTATATGATGAA 58.783 33.333 0.00 0.00 40.61 2.57
547 550 9.066892 GTGAAGCCAAATAGGTATATGATGAAA 57.933 33.333 0.00 0.00 40.61 2.69
548 551 9.639563 TGAAGCCAAATAGGTATATGATGAAAA 57.360 29.630 0.00 0.00 40.61 2.29
587 590 8.786898 TGAATCTAATGCTACTAATTTGATGGC 58.213 33.333 0.00 0.00 32.33 4.40
588 591 8.696043 AATCTAATGCTACTAATTTGATGGCA 57.304 30.769 0.00 0.00 32.33 4.92
589 592 8.874744 ATCTAATGCTACTAATTTGATGGCAT 57.125 30.769 0.00 0.00 40.04 4.40
590 593 9.964354 ATCTAATGCTACTAATTTGATGGCATA 57.036 29.630 0.00 0.00 37.85 3.14
591 594 9.791801 TCTAATGCTACTAATTTGATGGCATAA 57.208 29.630 0.00 0.00 37.85 1.90
594 597 9.701098 AATGCTACTAATTTGATGGCATAAATG 57.299 29.630 0.00 0.32 37.85 2.32
595 598 8.236585 TGCTACTAATTTGATGGCATAAATGT 57.763 30.769 0.00 5.58 0.00 2.71
596 599 8.694540 TGCTACTAATTTGATGGCATAAATGTT 58.305 29.630 0.00 0.57 0.00 2.71
597 600 9.533253 GCTACTAATTTGATGGCATAAATGTTT 57.467 29.630 0.00 0.00 0.00 2.83
656 659 3.534357 TGGCTTTCCAATAAGGTTGGA 57.466 42.857 5.45 5.45 46.08 3.53
664 667 5.836024 TCCAATAAGGTTGGAAGTACACT 57.164 39.130 7.03 0.00 44.90 3.55
665 668 5.801380 TCCAATAAGGTTGGAAGTACACTC 58.199 41.667 7.03 0.00 44.90 3.51
666 669 5.546499 TCCAATAAGGTTGGAAGTACACTCT 59.454 40.000 7.03 0.00 44.90 3.24
667 670 5.643777 CCAATAAGGTTGGAAGTACACTCTG 59.356 44.000 0.52 0.00 42.06 3.35
668 671 3.771577 AAGGTTGGAAGTACACTCTGG 57.228 47.619 0.00 0.00 0.00 3.86
669 672 2.972348 AGGTTGGAAGTACACTCTGGA 58.028 47.619 0.00 0.00 0.00 3.86
670 673 2.900546 AGGTTGGAAGTACACTCTGGAG 59.099 50.000 0.00 0.00 0.00 3.86
671 674 2.028020 GGTTGGAAGTACACTCTGGAGG 60.028 54.545 0.00 0.00 0.00 4.30
672 675 1.938585 TGGAAGTACACTCTGGAGGG 58.061 55.000 0.00 0.00 37.98 4.30
673 676 1.431633 TGGAAGTACACTCTGGAGGGA 59.568 52.381 6.88 0.00 35.36 4.20
674 677 2.104170 GGAAGTACACTCTGGAGGGAG 58.896 57.143 6.88 0.00 39.09 4.30
675 678 2.557901 GGAAGTACACTCTGGAGGGAGT 60.558 54.545 6.88 2.94 46.14 3.85
676 679 3.308976 GGAAGTACACTCTGGAGGGAGTA 60.309 52.174 6.88 2.06 43.75 2.59
677 680 3.369242 AGTACACTCTGGAGGGAGTAC 57.631 52.381 6.88 12.52 43.75 2.73
678 681 2.648304 AGTACACTCTGGAGGGAGTACA 59.352 50.000 14.35 0.00 43.75 2.90
679 682 2.930109 ACACTCTGGAGGGAGTACAT 57.070 50.000 6.88 0.00 43.75 2.29
680 683 4.477581 AGTACACTCTGGAGGGAGTACATA 59.522 45.833 14.35 0.00 43.75 2.29
681 684 4.544564 ACACTCTGGAGGGAGTACATAT 57.455 45.455 6.88 0.00 43.75 1.78
682 685 5.664815 ACACTCTGGAGGGAGTACATATA 57.335 43.478 6.88 0.00 43.75 0.86
683 686 6.027025 ACACTCTGGAGGGAGTACATATAA 57.973 41.667 6.88 0.00 43.75 0.98
684 687 6.071984 ACACTCTGGAGGGAGTACATATAAG 58.928 44.000 6.88 0.00 43.75 1.73
685 688 6.071984 CACTCTGGAGGGAGTACATATAAGT 58.928 44.000 0.00 0.00 43.75 2.24
686 689 7.147177 ACACTCTGGAGGGAGTACATATAAGTA 60.147 40.741 6.88 0.00 43.75 2.24
687 690 7.724506 CACTCTGGAGGGAGTACATATAAGTAA 59.275 40.741 0.00 0.00 43.75 2.24
688 691 8.457757 ACTCTGGAGGGAGTACATATAAGTAAT 58.542 37.037 0.00 0.00 43.76 1.89
689 692 9.976776 CTCTGGAGGGAGTACATATAAGTAATA 57.023 37.037 0.00 0.00 0.00 0.98
692 695 9.543231 TGGAGGGAGTACATATAAGTAATAAGG 57.457 37.037 0.00 0.00 0.00 2.69
693 696 9.544579 GGAGGGAGTACATATAAGTAATAAGGT 57.455 37.037 0.00 0.00 0.00 3.50
712 715 9.723760 AATAAGGTATAATAAAAGGGCCAACTT 57.276 29.630 6.18 0.00 0.00 2.66
771 775 4.142687 CCCACTAAGAAAAATACGGCACAG 60.143 45.833 0.00 0.00 0.00 3.66
780 784 0.178068 ATACGGCACAGGTAGGCTTG 59.822 55.000 0.00 0.00 0.00 4.01
801 805 0.033109 GCCTAGGGCTTGAATTGGGT 60.033 55.000 11.72 0.00 46.69 4.51
813 817 2.093658 TGAATTGGGTTCGAGCCTAGAC 60.094 50.000 18.44 7.85 39.80 2.59
989 994 1.437986 CTAGGGTTTCCGCCTCTCG 59.562 63.158 0.00 0.00 38.33 4.04
1220 1228 0.761323 TTCCGACCTTCACCACCTCA 60.761 55.000 0.00 0.00 0.00 3.86
1225 1233 1.293498 CCTTCACCACCTCAGACGG 59.707 63.158 0.00 0.00 0.00 4.79
1255 1263 1.799258 GCTGCCTGGTTTGGTGACAG 61.799 60.000 0.00 0.00 44.54 3.51
1259 1267 0.670162 CCTGGTTTGGTGACAGCTTG 59.330 55.000 6.17 0.00 44.54 4.01
1260 1268 1.392589 CTGGTTTGGTGACAGCTTGT 58.607 50.000 6.17 0.00 44.54 3.16
1261 1269 1.066002 CTGGTTTGGTGACAGCTTGTG 59.934 52.381 6.17 0.00 44.54 3.33
1263 1271 0.249031 GTTTGGTGACAGCTTGTGGC 60.249 55.000 6.17 0.00 44.54 5.01
1337 1346 4.056050 CCACGTTAAGGTAGATATGGTGC 58.944 47.826 0.00 0.00 0.00 5.01
1505 1547 7.061789 GCAGTTTACATGTTTAATGTTACCTGC 59.938 37.037 2.30 9.97 37.37 4.85
1576 1631 5.408604 GGCAGTACTGATATTGGGTATTTCG 59.591 44.000 27.08 0.00 0.00 3.46
1619 1674 1.337703 TGCTGCCACACATTTTGAGAC 59.662 47.619 0.00 0.00 0.00 3.36
1621 1676 1.955778 CTGCCACACATTTTGAGACCA 59.044 47.619 0.00 0.00 0.00 4.02
1638 1694 6.220930 TGAGACCATTAAGCCGTAACATATC 58.779 40.000 0.00 0.00 0.00 1.63
1703 1766 7.149307 TGCATGATTATGTAATTTCTGCATGG 58.851 34.615 0.00 0.00 36.65 3.66
1715 1778 0.809385 CTGCATGGCTCTTTGAGGTG 59.191 55.000 0.00 0.00 0.00 4.00
1723 1786 3.190874 GGCTCTTTGAGGTGATCTAACG 58.809 50.000 0.00 0.00 0.00 3.18
1739 1802 9.690434 GTGATCTAACGAGTTTATGTCATTTTC 57.310 33.333 0.00 0.00 0.00 2.29
1766 1829 9.472361 TTTATTGTAGTTGACAGACTTACAGAC 57.528 33.333 0.00 0.00 39.88 3.51
2056 2125 0.984230 TGAGGGGTGTCCATGTTCTC 59.016 55.000 0.00 0.00 38.24 2.87
2057 2126 0.984230 GAGGGGTGTCCATGTTCTCA 59.016 55.000 0.00 0.00 38.24 3.27
2073 2142 2.571212 TCTCACATCGTGCTTGGTTTT 58.429 42.857 0.00 0.00 32.98 2.43
2076 2145 4.759693 TCTCACATCGTGCTTGGTTTTATT 59.240 37.500 0.00 0.00 32.98 1.40
2089 2159 6.650390 GCTTGGTTTTATTGTTCATTCCATGT 59.350 34.615 0.00 0.00 0.00 3.21
2093 2163 6.311200 GGTTTTATTGTTCATTCCATGTGCTC 59.689 38.462 0.00 0.00 0.00 4.26
2094 2164 5.581126 TTATTGTTCATTCCATGTGCTCC 57.419 39.130 0.00 0.00 0.00 4.70
2101 2171 5.314718 TCATTCCATGTGCTCCATCTATT 57.685 39.130 0.00 0.00 0.00 1.73
2150 2236 7.112779 AGGATCACTTAGTTTTAACATGAGGG 58.887 38.462 0.00 0.00 0.00 4.30
2151 2237 6.884836 GGATCACTTAGTTTTAACATGAGGGT 59.115 38.462 0.00 0.00 0.00 4.34
2152 2238 7.065923 GGATCACTTAGTTTTAACATGAGGGTC 59.934 40.741 0.00 0.00 0.00 4.46
2153 2239 6.833041 TCACTTAGTTTTAACATGAGGGTCA 58.167 36.000 0.00 0.00 0.00 4.02
2154 2240 6.708949 TCACTTAGTTTTAACATGAGGGTCAC 59.291 38.462 0.00 0.00 0.00 3.67
2203 2412 2.961526 ATACTTGTGGTAGAGTGGCG 57.038 50.000 0.00 0.00 33.51 5.69
2223 2432 4.494199 GGCGTACTTGCATGTGTCTATTTC 60.494 45.833 15.08 0.00 36.28 2.17
2452 2679 9.739786 GTTTTTCTGTTGTTTAGTCATTGTTTG 57.260 29.630 0.00 0.00 0.00 2.93
2574 2801 4.700268 TCATGTGAACAAAATCATCCCG 57.300 40.909 0.00 0.00 0.00 5.14
2669 2896 8.094548 TCGACATATAATAAAATCTGAGGGGTG 58.905 37.037 0.00 0.00 0.00 4.61
2677 2904 0.546267 ATCTGAGGGGTGAGCACACT 60.546 55.000 14.08 0.03 45.32 3.55
2798 3039 9.982291 TTGCGAAGTCAGTAATTTTTGTATATC 57.018 29.630 0.00 0.00 0.00 1.63
2905 3146 1.338107 ACGGTGACATGAGGAAGTCA 58.662 50.000 0.00 0.00 42.06 3.41
2974 3253 6.939730 TGTTTTCATGAGCTGATGTACCTTTA 59.060 34.615 13.11 0.00 32.72 1.85
3152 3431 5.638234 ACCAGCTTCAAACGTACTCTTAATC 59.362 40.000 0.00 0.00 0.00 1.75
3302 3585 2.119495 ACTATGTAAGTGCTCCCCCTG 58.881 52.381 0.00 0.00 36.93 4.45
3313 3596 1.536907 TCCCCCTGCCTTTCGTACA 60.537 57.895 0.00 0.00 0.00 2.90
3639 4244 5.353938 AGTCGTTTTAGCTCACACAAGTAA 58.646 37.500 0.00 0.00 0.00 2.24
3642 4247 5.233476 TCGTTTTAGCTCACACAAGTAAGTG 59.767 40.000 0.00 0.00 44.93 3.16
3670 4275 3.893813 AGTTCAGTAACTGTAACGGGTCT 59.106 43.478 0.00 0.00 44.40 3.85
3848 4587 6.599244 TCCCATGTCAATTCTTTACATGTCTC 59.401 38.462 0.00 0.00 45.78 3.36
3849 4588 6.600822 CCCATGTCAATTCTTTACATGTCTCT 59.399 38.462 0.00 0.00 45.78 3.10
3998 4739 4.022849 CGATCCTTGGAAATATTTCTGGGC 60.023 45.833 23.85 16.91 37.35 5.36
4010 4751 9.822185 GAAATATTTCTGGGCATTTGAGTTATT 57.178 29.630 18.99 0.00 34.41 1.40
4023 4765 7.699812 GCATTTGAGTTATTTTCTGCTAGGAAG 59.300 37.037 0.00 0.00 0.00 3.46
4053 4795 5.927819 TGGCCATTTTCATCTTTTGACTTT 58.072 33.333 0.00 0.00 32.84 2.66
4054 4796 5.990996 TGGCCATTTTCATCTTTTGACTTTC 59.009 36.000 0.00 0.00 32.84 2.62
4056 4798 6.707608 GGCCATTTTCATCTTTTGACTTTCTT 59.292 34.615 0.00 0.00 32.84 2.52
4057 4799 7.095481 GGCCATTTTCATCTTTTGACTTTCTTC 60.095 37.037 0.00 0.00 32.84 2.87
4058 4800 7.654923 GCCATTTTCATCTTTTGACTTTCTTCT 59.345 33.333 0.00 0.00 32.84 2.85
4075 4817 6.911250 TTCTTCTTGAAGGTTAAATTCCCC 57.089 37.500 10.08 0.00 0.00 4.81
4107 4849 4.065789 GGACCAAAAGTAGGACAACTCTG 58.934 47.826 0.00 0.00 0.00 3.35
4110 4852 6.243216 ACCAAAAGTAGGACAACTCTGTTA 57.757 37.500 0.00 0.00 35.30 2.41
4123 4865 2.370189 ACTCTGTTAGCAGTGCCTCTTT 59.630 45.455 12.58 0.00 43.05 2.52
4130 4872 1.882623 AGCAGTGCCTCTTTAAACAGC 59.117 47.619 12.58 0.00 0.00 4.40
4199 4943 1.032114 GGCTTACCTTCGCCTGCAAT 61.032 55.000 0.00 0.00 42.98 3.56
4208 4952 3.129287 CCTTCGCCTGCAATGATAAACTT 59.871 43.478 0.00 0.00 0.00 2.66
4244 4988 0.666374 TCTCGACTTTCACGACTGCA 59.334 50.000 0.00 0.00 35.88 4.41
4304 5051 1.999634 GCCCACCATGGATGCCTACT 62.000 60.000 21.47 0.00 40.96 2.57
4339 5086 5.818136 TGTTGTGGCAGCTTATTTATCTC 57.182 39.130 0.00 0.00 0.00 2.75
4342 5089 5.116084 TGTGGCAGCTTATTTATCTCCTT 57.884 39.130 0.00 0.00 0.00 3.36
4347 5094 6.767902 TGGCAGCTTATTTATCTCCTTTGTAG 59.232 38.462 0.00 0.00 0.00 2.74
4390 5137 7.281774 TGAGCAGAAAATTCTCATGTTAGATCC 59.718 37.037 0.00 0.00 34.74 3.36
4392 5139 6.425504 CAGAAAATTCTCATGTTAGATCCGC 58.574 40.000 0.00 0.00 34.74 5.54
4393 5140 6.259608 CAGAAAATTCTCATGTTAGATCCGCT 59.740 38.462 0.00 0.00 34.74 5.52
4394 5141 6.481644 AGAAAATTCTCATGTTAGATCCGCTC 59.518 38.462 0.00 0.00 29.94 5.03
4395 5142 4.944619 ATTCTCATGTTAGATCCGCTCA 57.055 40.909 0.00 0.00 0.00 4.26
4404 5151 1.372748 GATCCGCTCATCTGCTCGG 60.373 63.158 0.00 0.00 42.96 4.63
4423 5170 1.153289 CGTGCTAGCTGCTTGGGAT 60.153 57.895 17.23 0.00 43.37 3.85
4433 5180 1.005215 CTGCTTGGGATCTTGGAAGGT 59.995 52.381 0.00 0.00 0.00 3.50
4503 5250 1.217882 GACGTATGGTGCATGCTACC 58.782 55.000 24.12 24.12 38.71 3.18
4504 5251 0.179056 ACGTATGGTGCATGCTACCC 60.179 55.000 26.33 20.14 37.40 3.69
4505 5252 0.884704 CGTATGGTGCATGCTACCCC 60.885 60.000 26.33 18.17 37.40 4.95
4506 5253 0.537371 GTATGGTGCATGCTACCCCC 60.537 60.000 26.33 16.23 37.40 5.40
4507 5254 0.697511 TATGGTGCATGCTACCCCCT 60.698 55.000 26.33 17.41 37.40 4.79
4508 5255 1.999634 ATGGTGCATGCTACCCCCTC 62.000 60.000 26.33 10.08 37.40 4.30
4510 5257 1.153086 GTGCATGCTACCCCCTCTG 60.153 63.158 20.33 0.00 0.00 3.35
4513 5260 1.832912 CATGCTACCCCCTCTGTCC 59.167 63.158 0.00 0.00 0.00 4.02
4514 5261 1.384643 ATGCTACCCCCTCTGTCCC 60.385 63.158 0.00 0.00 0.00 4.46
4515 5262 2.768769 GCTACCCCCTCTGTCCCC 60.769 72.222 0.00 0.00 0.00 4.81
4516 5263 2.784984 CTACCCCCTCTGTCCCCA 59.215 66.667 0.00 0.00 0.00 4.96
4517 5264 1.082206 CTACCCCCTCTGTCCCCAA 59.918 63.158 0.00 0.00 0.00 4.12
4519 5266 0.103823 TACCCCCTCTGTCCCCAAAA 60.104 55.000 0.00 0.00 0.00 2.44
4520 5267 0.780090 ACCCCCTCTGTCCCCAAAAT 60.780 55.000 0.00 0.00 0.00 1.82
4521 5268 0.033109 CCCCCTCTGTCCCCAAAATC 60.033 60.000 0.00 0.00 0.00 2.17
4522 5269 1.002857 CCCCTCTGTCCCCAAAATCT 58.997 55.000 0.00 0.00 0.00 2.40
4523 5270 2.205342 CCCCTCTGTCCCCAAAATCTA 58.795 52.381 0.00 0.00 0.00 1.98
4524 5271 2.173569 CCCCTCTGTCCCCAAAATCTAG 59.826 54.545 0.00 0.00 0.00 2.43
4525 5272 3.115390 CCCTCTGTCCCCAAAATCTAGA 58.885 50.000 0.00 0.00 0.00 2.43
4526 5273 3.718956 CCCTCTGTCCCCAAAATCTAGAT 59.281 47.826 0.00 0.00 0.00 1.98
4527 5274 4.907875 CCCTCTGTCCCCAAAATCTAGATA 59.092 45.833 5.46 0.00 0.00 1.98
4528 5275 5.221742 CCCTCTGTCCCCAAAATCTAGATAC 60.222 48.000 5.46 0.00 0.00 2.24
4529 5276 5.366768 CCTCTGTCCCCAAAATCTAGATACA 59.633 44.000 5.46 3.97 0.00 2.29
4530 5277 6.043706 CCTCTGTCCCCAAAATCTAGATACAT 59.956 42.308 5.46 0.00 0.00 2.29
4531 5278 7.067496 TCTGTCCCCAAAATCTAGATACATC 57.933 40.000 5.46 0.00 0.00 3.06
4532 5279 6.846505 TCTGTCCCCAAAATCTAGATACATCT 59.153 38.462 5.46 0.00 40.86 2.90
4533 5280 8.010697 TCTGTCCCCAAAATCTAGATACATCTA 58.989 37.037 5.46 0.00 38.32 1.98
4534 5281 8.742125 TGTCCCCAAAATCTAGATACATCTAT 57.258 34.615 5.46 0.00 38.60 1.98
4535 5282 9.837681 TGTCCCCAAAATCTAGATACATCTATA 57.162 33.333 5.46 0.00 38.60 1.31
4554 5301 9.566530 CATCTATATCCAGACAAATCTAAGACG 57.433 37.037 0.00 0.00 32.25 4.18
4555 5302 8.919777 TCTATATCCAGACAAATCTAAGACGA 57.080 34.615 0.00 0.00 32.25 4.20
4556 5303 9.004717 TCTATATCCAGACAAATCTAAGACGAG 57.995 37.037 0.00 0.00 32.25 4.18
4557 5304 4.111375 TCCAGACAAATCTAAGACGAGC 57.889 45.455 0.00 0.00 32.25 5.03
4558 5305 3.764434 TCCAGACAAATCTAAGACGAGCT 59.236 43.478 0.00 0.00 32.25 4.09
4559 5306 4.220821 TCCAGACAAATCTAAGACGAGCTT 59.779 41.667 0.00 0.00 40.68 3.74
4560 5307 4.932200 CCAGACAAATCTAAGACGAGCTTT 59.068 41.667 0.00 0.00 38.05 3.51
4561 5308 5.409826 CCAGACAAATCTAAGACGAGCTTTT 59.590 40.000 0.00 0.00 38.05 2.27
4562 5309 6.073003 CCAGACAAATCTAAGACGAGCTTTTT 60.073 38.462 0.00 0.00 38.05 1.94
4563 5310 6.794158 CAGACAAATCTAAGACGAGCTTTTTG 59.206 38.462 12.44 12.44 37.63 2.44
4564 5311 6.002062 ACAAATCTAAGACGAGCTTTTTGG 57.998 37.500 15.64 5.40 36.69 3.28
4565 5312 5.048713 ACAAATCTAAGACGAGCTTTTTGGG 60.049 40.000 15.64 0.00 36.69 4.12
4566 5313 4.553330 ATCTAAGACGAGCTTTTTGGGA 57.447 40.909 0.00 0.00 38.05 4.37
4567 5314 3.660865 TCTAAGACGAGCTTTTTGGGAC 58.339 45.455 0.00 0.00 38.05 4.46
4568 5315 1.226746 AAGACGAGCTTTTTGGGACG 58.773 50.000 0.00 0.00 31.11 4.79
4569 5316 0.602905 AGACGAGCTTTTTGGGACGG 60.603 55.000 0.00 0.00 0.00 4.79
4570 5317 0.601841 GACGAGCTTTTTGGGACGGA 60.602 55.000 0.00 0.00 0.00 4.69
4571 5318 0.602905 ACGAGCTTTTTGGGACGGAG 60.603 55.000 0.00 0.00 0.00 4.63
4586 5333 0.669077 CGGAGGTAGGGAGTCATTCG 59.331 60.000 0.00 0.00 0.00 3.34
4618 5365 5.646360 ACTAATTAGGTTGCGCAGTATTGTT 59.354 36.000 11.31 6.28 0.00 2.83
4626 5373 2.287308 TGCGCAGTATTGTTGTGGAAAC 60.287 45.455 5.66 0.00 0.00 2.78
4631 5378 5.461737 CGCAGTATTGTTGTGGAAACAAAAT 59.538 36.000 7.64 3.56 46.06 1.82
4647 5394 9.206870 GGAAACAAAATTCAAGATGAGCAATTA 57.793 29.630 0.00 0.00 0.00 1.40
4660 5408 7.854934 GATGAGCAATTATTTTGATCAGCTC 57.145 36.000 17.72 17.72 46.12 4.09
4668 5416 9.727627 CAATTATTTTGATCAGCTCTTAGGTTC 57.272 33.333 0.00 0.00 0.00 3.62
4688 5436 6.322712 AGGTTCTGTATGGTTGCAAAGTAAAA 59.677 34.615 0.00 0.00 0.00 1.52
4689 5437 6.419710 GGTTCTGTATGGTTGCAAAGTAAAAC 59.580 38.462 0.00 0.00 0.00 2.43
4693 5441 8.851145 TCTGTATGGTTGCAAAGTAAAACAATA 58.149 29.630 0.00 0.00 0.00 1.90
4722 5470 6.471519 GCTCTTCTTTGAACATGATACATTGC 59.528 38.462 0.00 0.00 0.00 3.56
4861 5623 7.331687 ACCATAACACAGCTTTCATTTTTATGC 59.668 33.333 0.00 0.00 0.00 3.14
4862 5624 5.827568 AACACAGCTTTCATTTTTATGCG 57.172 34.783 0.00 0.00 0.00 4.73
4888 5650 7.636359 GCGTACTTATAATTCTGCTTTTCACTG 59.364 37.037 0.00 0.00 0.00 3.66
4907 5669 6.192044 TCACTGTTCTGTAGGTGGTGATATA 58.808 40.000 0.00 0.00 0.00 0.86
4989 5751 7.305246 ACAATGGCAGGTAATATTAGGGATTT 58.695 34.615 0.00 0.00 0.00 2.17
5107 7157 6.729187 ACAGCAAAGTTGAACTTTATCAGAC 58.271 36.000 21.48 8.46 45.84 3.51
5149 7201 7.610305 AGGTATTTACATTTAACTGACCAGTGG 59.390 37.037 7.91 7.91 41.58 4.00
5190 7243 7.996098 TCAGTTAAAGGGTTAAATCCTGAAG 57.004 36.000 0.00 0.00 31.75 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 0.032117 TGAGATCCCCGGAGACACAT 60.032 55.000 0.73 0.00 0.00 3.21
40 41 3.117738 ACCAACTGAATCCCATGAGATCC 60.118 47.826 0.00 0.00 0.00 3.36
42 43 5.919348 ATACCAACTGAATCCCATGAGAT 57.081 39.130 0.00 0.00 0.00 2.75
43 44 5.715439 AATACCAACTGAATCCCATGAGA 57.285 39.130 0.00 0.00 0.00 3.27
44 45 5.450965 GCAAATACCAACTGAATCCCATGAG 60.451 44.000 0.00 0.00 0.00 2.90
45 46 4.402155 GCAAATACCAACTGAATCCCATGA 59.598 41.667 0.00 0.00 0.00 3.07
46 47 4.441913 GGCAAATACCAACTGAATCCCATG 60.442 45.833 0.00 0.00 0.00 3.66
47 48 3.706086 GGCAAATACCAACTGAATCCCAT 59.294 43.478 0.00 0.00 0.00 4.00
48 49 3.096092 GGCAAATACCAACTGAATCCCA 58.904 45.455 0.00 0.00 0.00 4.37
68 70 0.530650 CCACACGGATCCATCGAAGG 60.531 60.000 13.41 0.00 0.00 3.46
83 85 1.202325 CGAACGAATACCGGATCCACA 60.202 52.381 9.46 0.00 43.93 4.17
84 86 1.202336 ACGAACGAATACCGGATCCAC 60.202 52.381 9.46 0.00 43.93 4.02
105 107 2.892374 TCCATAGACACATGAACGCAG 58.108 47.619 0.00 0.00 0.00 5.18
108 110 4.191544 ACCAATCCATAGACACATGAACG 58.808 43.478 0.00 0.00 0.00 3.95
129 131 3.274288 AGAAGCAATGATCGGAAGGAAC 58.726 45.455 0.00 0.00 0.00 3.62
140 142 6.349860 CCATTGTTGATGAAGAGAAGCAATGA 60.350 38.462 13.38 0.00 42.34 2.57
163 165 1.483827 TCATGCAAAAGCCAACAACCA 59.516 42.857 0.00 0.00 0.00 3.67
164 166 2.237393 TCATGCAAAAGCCAACAACC 57.763 45.000 0.00 0.00 0.00 3.77
174 176 5.214417 CAGTCGAAAAGTCATCATGCAAAA 58.786 37.500 0.00 0.00 0.00 2.44
177 179 3.402110 ACAGTCGAAAAGTCATCATGCA 58.598 40.909 0.00 0.00 0.00 3.96
181 183 5.410924 CCATAGACAGTCGAAAAGTCATCA 58.589 41.667 13.49 1.99 34.80 3.07
184 186 3.006430 TGCCATAGACAGTCGAAAAGTCA 59.994 43.478 13.49 3.19 34.80 3.41
196 198 3.561143 ACAAACCTTGTTGCCATAGACA 58.439 40.909 0.00 0.00 42.22 3.41
203 205 0.030235 GTCGGACAAACCTTGTTGCC 59.970 55.000 2.62 0.00 45.52 4.52
218 220 1.683917 CCCTTGTCTCATAGGAGTCGG 59.316 57.143 4.02 1.40 42.05 4.79
221 223 3.474798 TCACCCTTGTCTCATAGGAGT 57.525 47.619 4.02 0.00 42.05 3.85
233 235 0.038618 TGTCGTCGTCATCACCCTTG 60.039 55.000 0.00 0.00 0.00 3.61
235 237 1.176619 TGTGTCGTCGTCATCACCCT 61.177 55.000 0.00 0.00 0.00 4.34
237 239 1.007336 GGTGTGTCGTCGTCATCACC 61.007 60.000 19.43 19.43 38.47 4.02
247 249 1.480954 AGTGAGTTGAAGGTGTGTCGT 59.519 47.619 0.00 0.00 0.00 4.34
250 252 1.837439 TGGAGTGAGTTGAAGGTGTGT 59.163 47.619 0.00 0.00 0.00 3.72
254 256 3.322254 CAGTACTGGAGTGAGTTGAAGGT 59.678 47.826 15.49 0.00 0.00 3.50
273 275 2.701780 CCTAGCGACGACTGCCAGT 61.702 63.158 0.00 0.00 0.00 4.00
278 280 1.136984 GACCACCTAGCGACGACTG 59.863 63.158 0.00 0.00 0.00 3.51
281 283 2.034532 TGGACCACCTAGCGACGA 59.965 61.111 0.00 0.00 37.04 4.20
286 288 1.961180 ATGCTCGTGGACCACCTAGC 61.961 60.000 28.06 28.06 37.51 3.42
323 325 9.720769 AATATTATGGAGTATAAAGAACACCCG 57.279 33.333 0.00 0.00 35.03 5.28
368 370 5.360714 TCCAACCTATTGATCAAATTGCCTC 59.639 40.000 13.09 0.00 38.15 4.70
427 430 3.582647 TGCACTCTTTAAGGACAGATGGA 59.417 43.478 0.00 0.00 0.00 3.41
428 431 3.686726 GTGCACTCTTTAAGGACAGATGG 59.313 47.826 10.32 0.00 0.00 3.51
429 432 4.573900 AGTGCACTCTTTAAGGACAGATG 58.426 43.478 15.25 0.00 0.00 2.90
430 433 4.899352 AGTGCACTCTTTAAGGACAGAT 57.101 40.909 15.25 0.00 0.00 2.90
431 434 4.503296 GGAAGTGCACTCTTTAAGGACAGA 60.503 45.833 21.95 0.00 0.00 3.41
432 435 3.748568 GGAAGTGCACTCTTTAAGGACAG 59.251 47.826 21.95 0.00 0.00 3.51
433 436 3.135712 TGGAAGTGCACTCTTTAAGGACA 59.864 43.478 21.95 6.09 0.00 4.02
434 437 3.740115 TGGAAGTGCACTCTTTAAGGAC 58.260 45.455 21.95 3.56 0.00 3.85
436 439 5.712152 AATTGGAAGTGCACTCTTTAAGG 57.288 39.130 21.95 0.00 0.00 2.69
437 440 6.980397 ACAAAATTGGAAGTGCACTCTTTAAG 59.020 34.615 21.95 12.47 0.00 1.85
440 443 5.343307 ACAAAATTGGAAGTGCACTCTTT 57.657 34.783 21.95 4.09 0.00 2.52
441 444 5.343307 AACAAAATTGGAAGTGCACTCTT 57.657 34.783 21.95 5.00 0.00 2.85
442 445 5.827797 TCTAACAAAATTGGAAGTGCACTCT 59.172 36.000 21.95 10.57 0.00 3.24
446 449 4.280677 CCCTCTAACAAAATTGGAAGTGCA 59.719 41.667 0.00 0.00 0.00 4.57
447 450 4.280929 ACCCTCTAACAAAATTGGAAGTGC 59.719 41.667 0.00 0.00 0.00 4.40
448 451 5.534654 TGACCCTCTAACAAAATTGGAAGTG 59.465 40.000 0.00 0.00 0.00 3.16
450 453 6.648879 TTGACCCTCTAACAAAATTGGAAG 57.351 37.500 0.00 0.00 0.00 3.46
451 454 6.609616 AGTTTGACCCTCTAACAAAATTGGAA 59.390 34.615 0.00 0.00 35.17 3.53
452 455 6.133356 AGTTTGACCCTCTAACAAAATTGGA 58.867 36.000 0.00 0.00 35.17 3.53
453 456 6.405278 AGTTTGACCCTCTAACAAAATTGG 57.595 37.500 0.00 0.00 35.17 3.16
454 457 9.014297 AGATAGTTTGACCCTCTAACAAAATTG 57.986 33.333 0.00 0.00 35.17 2.32
455 458 9.232473 GAGATAGTTTGACCCTCTAACAAAATT 57.768 33.333 0.00 0.00 35.17 1.82
456 459 8.383175 TGAGATAGTTTGACCCTCTAACAAAAT 58.617 33.333 0.00 0.00 35.17 1.82
458 461 7.311092 TGAGATAGTTTGACCCTCTAACAAA 57.689 36.000 0.00 0.00 35.17 2.83
460 463 6.928348 TTGAGATAGTTTGACCCTCTAACA 57.072 37.500 0.00 0.00 35.17 2.41
461 464 7.387643 ACTTTGAGATAGTTTGACCCTCTAAC 58.612 38.462 0.00 0.00 33.39 2.34
463 466 7.554959 AACTTTGAGATAGTTTGACCCTCTA 57.445 36.000 0.00 0.00 32.06 2.43
472 475 6.289064 ACTCGGTCAAACTTTGAGATAGTTT 58.711 36.000 4.36 0.00 44.38 2.66
473 476 5.855045 ACTCGGTCAAACTTTGAGATAGTT 58.145 37.500 4.36 0.00 41.01 2.24
474 477 5.470047 ACTCGGTCAAACTTTGAGATAGT 57.530 39.130 4.36 5.79 41.01 2.12
475 478 6.202954 ACAAACTCGGTCAAACTTTGAGATAG 59.797 38.462 4.36 5.24 41.01 2.08
476 479 6.018262 CACAAACTCGGTCAAACTTTGAGATA 60.018 38.462 4.36 0.00 41.01 1.98
477 480 4.881850 ACAAACTCGGTCAAACTTTGAGAT 59.118 37.500 4.36 0.00 41.01 2.75
478 481 4.094294 CACAAACTCGGTCAAACTTTGAGA 59.906 41.667 4.36 0.00 41.01 3.27
479 482 4.142687 ACACAAACTCGGTCAAACTTTGAG 60.143 41.667 4.36 0.00 41.01 3.02
480 483 3.754323 ACACAAACTCGGTCAAACTTTGA 59.246 39.130 0.00 0.00 37.33 2.69
481 484 4.091453 ACACAAACTCGGTCAAACTTTG 57.909 40.909 0.00 0.00 0.00 2.77
482 485 5.180271 TCTACACAAACTCGGTCAAACTTT 58.820 37.500 0.00 0.00 0.00 2.66
483 486 4.761975 TCTACACAAACTCGGTCAAACTT 58.238 39.130 0.00 0.00 0.00 2.66
484 487 4.395959 TCTACACAAACTCGGTCAAACT 57.604 40.909 0.00 0.00 0.00 2.66
485 488 5.473796 TTTCTACACAAACTCGGTCAAAC 57.526 39.130 0.00 0.00 0.00 2.93
486 489 7.972832 ATATTTCTACACAAACTCGGTCAAA 57.027 32.000 0.00 0.00 0.00 2.69
487 490 9.661563 AATATATTTCTACACAAACTCGGTCAA 57.338 29.630 0.00 0.00 0.00 3.18
510 513 9.030452 ACCTATTTGGCTTCACAAACATTAATA 57.970 29.630 0.00 0.00 42.51 0.98
511 514 7.906327 ACCTATTTGGCTTCACAAACATTAAT 58.094 30.769 0.00 0.00 42.51 1.40
512 515 7.296628 ACCTATTTGGCTTCACAAACATTAA 57.703 32.000 0.00 0.00 42.51 1.40
513 516 6.909550 ACCTATTTGGCTTCACAAACATTA 57.090 33.333 0.00 0.00 42.51 1.90
514 517 5.806654 ACCTATTTGGCTTCACAAACATT 57.193 34.783 0.00 0.00 42.51 2.71
515 518 8.632679 CATATACCTATTTGGCTTCACAAACAT 58.367 33.333 0.00 0.00 42.51 2.71
516 519 7.831690 TCATATACCTATTTGGCTTCACAAACA 59.168 33.333 0.00 0.00 42.51 2.83
517 520 8.220755 TCATATACCTATTTGGCTTCACAAAC 57.779 34.615 0.00 0.00 42.51 2.93
518 521 8.849168 CATCATATACCTATTTGGCTTCACAAA 58.151 33.333 0.00 0.00 43.69 2.83
519 522 8.217111 TCATCATATACCTATTTGGCTTCACAA 58.783 33.333 0.00 0.00 40.22 3.33
520 523 7.744733 TCATCATATACCTATTTGGCTTCACA 58.255 34.615 0.00 0.00 40.22 3.58
521 524 8.621532 TTCATCATATACCTATTTGGCTTCAC 57.378 34.615 0.00 0.00 40.22 3.18
522 525 9.639563 TTTTCATCATATACCTATTTGGCTTCA 57.360 29.630 0.00 0.00 40.22 3.02
561 564 8.786898 GCCATCAAATTAGTAGCATTAGATTCA 58.213 33.333 0.00 0.00 0.00 2.57
562 565 8.786898 TGCCATCAAATTAGTAGCATTAGATTC 58.213 33.333 0.00 0.00 0.00 2.52
563 566 8.696043 TGCCATCAAATTAGTAGCATTAGATT 57.304 30.769 0.00 0.00 0.00 2.40
564 567 8.874744 ATGCCATCAAATTAGTAGCATTAGAT 57.125 30.769 0.00 0.00 36.10 1.98
565 568 9.791801 TTATGCCATCAAATTAGTAGCATTAGA 57.208 29.630 0.00 0.00 39.89 2.10
568 571 9.701098 CATTTATGCCATCAAATTAGTAGCATT 57.299 29.630 0.00 0.00 39.89 3.56
569 572 8.863086 ACATTTATGCCATCAAATTAGTAGCAT 58.137 29.630 0.00 0.00 41.89 3.79
570 573 8.236585 ACATTTATGCCATCAAATTAGTAGCA 57.763 30.769 0.00 0.00 0.00 3.49
571 574 9.533253 AAACATTTATGCCATCAAATTAGTAGC 57.467 29.630 0.00 0.00 0.00 3.58
636 639 3.534357 TCCAACCTTATTGGAAAGCCA 57.466 42.857 5.91 0.00 44.90 4.75
642 645 5.546499 AGAGTGTACTTCCAACCTTATTGGA 59.454 40.000 4.24 4.24 46.08 3.53
643 646 5.643777 CAGAGTGTACTTCCAACCTTATTGG 59.356 44.000 0.00 0.00 40.87 3.16
644 647 5.643777 CCAGAGTGTACTTCCAACCTTATTG 59.356 44.000 0.00 0.00 0.00 1.90
645 648 5.546499 TCCAGAGTGTACTTCCAACCTTATT 59.454 40.000 0.00 0.00 0.00 1.40
646 649 5.091552 TCCAGAGTGTACTTCCAACCTTAT 58.908 41.667 0.00 0.00 0.00 1.73
647 650 4.485875 TCCAGAGTGTACTTCCAACCTTA 58.514 43.478 0.00 0.00 0.00 2.69
648 651 3.314693 TCCAGAGTGTACTTCCAACCTT 58.685 45.455 0.00 0.00 0.00 3.50
649 652 2.900546 CTCCAGAGTGTACTTCCAACCT 59.099 50.000 0.00 0.00 0.00 3.50
650 653 2.028020 CCTCCAGAGTGTACTTCCAACC 60.028 54.545 0.00 0.00 0.00 3.77
651 654 2.028020 CCCTCCAGAGTGTACTTCCAAC 60.028 54.545 0.00 0.00 0.00 3.77
652 655 2.158219 TCCCTCCAGAGTGTACTTCCAA 60.158 50.000 0.00 0.00 0.00 3.53
653 656 1.431633 TCCCTCCAGAGTGTACTTCCA 59.568 52.381 0.00 0.00 0.00 3.53
654 657 2.104170 CTCCCTCCAGAGTGTACTTCC 58.896 57.143 0.00 0.00 0.00 3.46
655 658 2.810164 ACTCCCTCCAGAGTGTACTTC 58.190 52.381 0.00 0.00 45.41 3.01
656 659 3.075582 TGTACTCCCTCCAGAGTGTACTT 59.924 47.826 16.46 0.00 46.54 2.24
657 660 2.648304 TGTACTCCCTCCAGAGTGTACT 59.352 50.000 16.46 0.00 46.54 2.73
658 661 3.083122 TGTACTCCCTCCAGAGTGTAC 57.917 52.381 4.49 12.14 46.54 2.90
659 662 5.664815 ATATGTACTCCCTCCAGAGTGTA 57.335 43.478 4.49 0.00 46.54 2.90
660 663 2.930109 ATGTACTCCCTCCAGAGTGT 57.070 50.000 4.49 0.00 46.54 3.55
661 664 6.071984 ACTTATATGTACTCCCTCCAGAGTG 58.928 44.000 4.49 0.00 46.54 3.51
663 666 8.887264 ATTACTTATATGTACTCCCTCCAGAG 57.113 38.462 0.00 0.00 39.91 3.35
666 669 9.543231 CCTTATTACTTATATGTACTCCCTCCA 57.457 37.037 0.00 0.00 0.00 3.86
667 670 9.544579 ACCTTATTACTTATATGTACTCCCTCC 57.455 37.037 0.00 0.00 0.00 4.30
686 689 9.723760 AAGTTGGCCCTTTTATTATACCTTATT 57.276 29.630 0.00 0.00 0.00 1.40
687 690 9.363401 GAAGTTGGCCCTTTTATTATACCTTAT 57.637 33.333 0.00 0.00 0.00 1.73
688 691 7.781219 GGAAGTTGGCCCTTTTATTATACCTTA 59.219 37.037 0.00 0.00 0.00 2.69
689 692 6.610020 GGAAGTTGGCCCTTTTATTATACCTT 59.390 38.462 0.00 0.00 0.00 3.50
690 693 6.068438 AGGAAGTTGGCCCTTTTATTATACCT 60.068 38.462 0.00 0.00 0.00 3.08
691 694 6.134055 AGGAAGTTGGCCCTTTTATTATACC 58.866 40.000 0.00 0.00 0.00 2.73
692 695 7.560262 AGAAGGAAGTTGGCCCTTTTATTATAC 59.440 37.037 0.00 0.00 42.43 1.47
693 696 7.648770 AGAAGGAAGTTGGCCCTTTTATTATA 58.351 34.615 0.00 0.00 42.43 0.98
694 697 6.503041 AGAAGGAAGTTGGCCCTTTTATTAT 58.497 36.000 0.00 0.00 42.43 1.28
706 709 6.202516 TGTGTGTTTTTAGAAGGAAGTTGG 57.797 37.500 0.00 0.00 0.00 3.77
712 715 4.953579 AGGCTTTGTGTGTTTTTAGAAGGA 59.046 37.500 0.00 0.00 0.00 3.36
785 789 1.631388 TCGAACCCAATTCAAGCCCTA 59.369 47.619 0.00 0.00 37.12 3.53
813 817 3.136123 CGAAGTGGGCTGGCCATG 61.136 66.667 26.61 12.59 37.98 3.66
849 854 1.831652 GAGTGGGGACTGGTCAGTGG 61.832 65.000 8.49 0.00 42.66 4.00
851 856 1.536662 GGAGTGGGGACTGGTCAGT 60.537 63.158 2.94 2.94 45.84 3.41
852 857 1.127567 TTGGAGTGGGGACTGGTCAG 61.128 60.000 3.10 0.00 0.00 3.51
853 858 1.074090 TTGGAGTGGGGACTGGTCA 60.074 57.895 3.10 0.00 0.00 4.02
918 923 1.890174 GCCAATTCCAAACCCCTCG 59.110 57.895 0.00 0.00 0.00 4.63
1220 1228 4.736896 GCGGCCGAAGAACCGTCT 62.737 66.667 33.48 0.00 46.21 4.18
1255 1263 1.173913 AATAAGGGTTCGCCACAAGC 58.826 50.000 0.00 0.00 39.65 4.01
1259 1267 2.164338 TCCAAAATAAGGGTTCGCCAC 58.836 47.619 0.00 0.00 39.65 5.01
1260 1268 2.588464 TCCAAAATAAGGGTTCGCCA 57.412 45.000 0.00 0.00 39.65 5.69
1261 1269 3.568430 CCTATCCAAAATAAGGGTTCGCC 59.432 47.826 0.00 0.00 0.00 5.54
1263 1271 4.142038 CCCCTATCCAAAATAAGGGTTCG 58.858 47.826 5.58 0.00 46.28 3.95
1319 1327 4.056050 CCACGCACCATATCTACCTTAAC 58.944 47.826 0.00 0.00 0.00 2.01
1337 1346 1.597663 GGCTATTCAACCGAATCCACG 59.402 52.381 0.00 0.00 41.09 4.94
1468 1510 6.403866 ACATGTAAACTGCAAATTTCCAGA 57.596 33.333 16.08 0.00 33.40 3.86
1505 1547 5.220605 GGAAACTAATTCTCACCCGAAATCG 60.221 44.000 0.00 0.00 38.18 3.34
1576 1631 2.887152 ACACAGAGCTTCATTTTGGGTC 59.113 45.455 0.00 0.00 0.00 4.46
1638 1694 9.614792 AAGGCAAGTTAGAACTAGGTAATAATG 57.385 33.333 0.00 0.00 38.57 1.90
1697 1760 0.401356 TCACCTCAAAGAGCCATGCA 59.599 50.000 0.00 0.00 0.00 3.96
1703 1766 4.109050 CTCGTTAGATCACCTCAAAGAGC 58.891 47.826 0.00 0.00 0.00 4.09
1739 1802 9.692749 TCTGTAAGTCTGTCAACTACAATAAAG 57.307 33.333 0.00 0.00 34.09 1.85
1754 1817 4.336993 AGCCTATTCTCGTCTGTAAGTCTG 59.663 45.833 0.00 0.00 33.76 3.51
1757 1820 4.098196 GGAAGCCTATTCTCGTCTGTAAGT 59.902 45.833 0.00 0.00 33.76 2.24
1766 1829 2.880890 CAAATGGGGAAGCCTATTCTCG 59.119 50.000 0.00 0.00 0.00 4.04
2041 2110 2.359900 GATGTGAGAACATGGACACCC 58.640 52.381 0.00 0.00 33.08 4.61
2056 2125 4.545610 ACAATAAAACCAAGCACGATGTG 58.454 39.130 0.00 0.00 36.51 3.21
2057 2126 4.846779 ACAATAAAACCAAGCACGATGT 57.153 36.364 0.00 0.00 0.00 3.06
2089 2159 9.276590 CACATTAGAACAATAATAGATGGAGCA 57.723 33.333 0.00 0.00 0.00 4.26
2093 2163 9.784531 AGTCCACATTAGAACAATAATAGATGG 57.215 33.333 0.00 0.00 0.00 3.51
2101 2171 5.804639 ACTGCAGTCCACATTAGAACAATA 58.195 37.500 15.25 0.00 0.00 1.90
2203 2412 8.196802 TGTATGAAATAGACACATGCAAGTAC 57.803 34.615 0.00 0.00 34.78 2.73
2223 2432 6.595326 TGCAGTTAAGGAATCAAGAGTGTATG 59.405 38.462 0.00 0.00 0.00 2.39
2308 2533 4.293415 CCTTGTGAAGAAGTGAACAATGC 58.707 43.478 0.00 0.00 32.47 3.56
2309 2534 4.037208 AGCCTTGTGAAGAAGTGAACAATG 59.963 41.667 0.00 0.00 32.47 2.82
2501 2728 6.257411 CCTTGTATACTTCTCAATGACTGCAG 59.743 42.308 13.48 13.48 0.00 4.41
2798 3039 3.066900 ACTTAGTGCCAGCATACTCGTAG 59.933 47.826 0.00 0.00 0.00 3.51
2809 3050 5.182001 AGAACAAGCATAAACTTAGTGCCAG 59.818 40.000 0.00 0.00 39.62 4.85
2905 3146 7.931407 TCAGACGTAACCTGCAATATATTCAAT 59.069 33.333 0.00 0.00 0.00 2.57
2974 3253 4.216257 GGCAATGTATGTCAGTGTCAAACT 59.784 41.667 0.00 0.00 44.63 2.66
3152 3431 5.008911 TGAATTATGAAAGATGGTGATGGCG 59.991 40.000 0.00 0.00 0.00 5.69
3302 3585 5.642491 AGGAAGTTTAGAATGTACGAAAGGC 59.358 40.000 0.00 0.00 0.00 4.35
3639 4244 7.376615 GTTACAGTTACTGAACTATGGTCACT 58.623 38.462 20.07 0.00 44.39 3.41
3642 4247 5.803967 CCGTTACAGTTACTGAACTATGGTC 59.196 44.000 20.07 0.00 44.39 4.02
3710 4316 4.883006 GTCTAGAGGAAAGACCATACTCGT 59.117 45.833 0.00 0.00 42.04 4.18
3751 4365 5.713025 ACATGATTTGTGTGACTAATTGCC 58.287 37.500 0.00 0.00 37.11 4.52
3848 4587 6.018751 TCACTTTCTGAAAATCGACAAGTCAG 60.019 38.462 4.18 9.75 37.62 3.51
3849 4588 5.815222 TCACTTTCTGAAAATCGACAAGTCA 59.185 36.000 4.18 0.00 0.00 3.41
3998 4739 8.186821 CCTTCCTAGCAGAAAATAACTCAAATG 58.813 37.037 0.00 0.00 0.00 2.32
4010 4751 4.444876 GCCATCATACCTTCCTAGCAGAAA 60.445 45.833 0.00 0.00 0.00 2.52
4023 4765 5.796424 AAGATGAAAATGGCCATCATACC 57.204 39.130 21.08 8.42 41.07 2.73
4053 4795 5.959512 TGGGGAATTTAACCTTCAAGAAGA 58.040 37.500 11.25 0.00 40.79 2.87
4054 4796 6.267699 ACTTGGGGAATTTAACCTTCAAGAAG 59.732 38.462 18.49 2.83 39.37 2.85
4056 4798 5.711698 ACTTGGGGAATTTAACCTTCAAGA 58.288 37.500 18.49 0.00 39.37 3.02
4057 4799 6.719829 AGTACTTGGGGAATTTAACCTTCAAG 59.280 38.462 1.31 1.31 40.48 3.02
4058 4800 6.492087 CAGTACTTGGGGAATTTAACCTTCAA 59.508 38.462 0.00 0.00 0.00 2.69
4060 4802 5.417894 CCAGTACTTGGGGAATTTAACCTTC 59.582 44.000 0.00 0.00 43.75 3.46
4061 4803 5.330233 CCAGTACTTGGGGAATTTAACCTT 58.670 41.667 0.00 0.00 43.75 3.50
4062 4804 4.930696 CCAGTACTTGGGGAATTTAACCT 58.069 43.478 0.00 0.00 43.75 3.50
4075 4817 3.223674 ACTTTTGGTCCCCAGTACTTG 57.776 47.619 0.00 0.00 33.81 3.16
4107 4849 4.613850 GCTGTTTAAAGAGGCACTGCTAAC 60.614 45.833 13.71 0.00 41.55 2.34
4110 4852 1.882623 GCTGTTTAAAGAGGCACTGCT 59.117 47.619 13.71 0.00 41.55 4.24
4123 4865 3.815962 TCAATAACGTTGCTGGCTGTTTA 59.184 39.130 11.99 0.00 0.00 2.01
4130 4872 3.188254 TGTGATGTCAATAACGTTGCTGG 59.812 43.478 11.99 0.00 0.00 4.85
4166 4910 1.134788 GTAAGCCGATACCTGCACAGT 60.135 52.381 0.00 0.00 0.00 3.55
4199 4943 2.224992 TGCCCCAAGCTGAAGTTTATCA 60.225 45.455 0.00 0.00 44.23 2.15
4208 4952 1.203441 AGATCAGTGCCCCAAGCTGA 61.203 55.000 0.00 0.00 44.23 4.26
4244 4988 3.124921 GCAACCATAGCCGTGCGT 61.125 61.111 0.00 0.00 0.00 5.24
4268 5012 3.763897 GTGGGCCATGTTCAAATTAGTCT 59.236 43.478 10.70 0.00 0.00 3.24
4304 5051 2.562298 GCCACAACATTTCCAGATCCAA 59.438 45.455 0.00 0.00 0.00 3.53
4342 5089 7.561021 TCAATGCACTTTGAAGTAACTACAA 57.439 32.000 0.18 0.00 37.08 2.41
4377 5124 4.236147 CAGATGAGCGGATCTAACATGAG 58.764 47.826 0.00 0.00 31.14 2.90
4392 5139 2.341807 TAGCACGCCGAGCAGATGAG 62.342 60.000 9.58 0.00 0.00 2.90
4393 5140 2.341807 CTAGCACGCCGAGCAGATGA 62.342 60.000 9.58 0.00 0.00 2.92
4394 5141 1.948138 CTAGCACGCCGAGCAGATG 60.948 63.158 9.58 0.00 0.00 2.90
4395 5142 2.415010 CTAGCACGCCGAGCAGAT 59.585 61.111 9.58 0.00 0.00 2.90
4423 5170 5.996644 TCAGTTCTAAAACACCTTCCAAGA 58.003 37.500 0.00 0.00 37.88 3.02
4433 5180 8.958119 ATCAGTTACAGTTCAGTTCTAAAACA 57.042 30.769 0.00 0.00 37.88 2.83
4503 5250 1.002857 AGATTTTGGGGACAGAGGGG 58.997 55.000 0.00 0.00 44.54 4.79
4504 5251 3.115390 TCTAGATTTTGGGGACAGAGGG 58.885 50.000 0.00 0.00 44.54 4.30
4505 5252 5.366768 TGTATCTAGATTTTGGGGACAGAGG 59.633 44.000 11.25 0.00 44.54 3.69
4506 5253 6.485830 TGTATCTAGATTTTGGGGACAGAG 57.514 41.667 11.25 0.00 44.54 3.35
4507 5254 6.846505 AGATGTATCTAGATTTTGGGGACAGA 59.153 38.462 11.25 0.00 37.16 3.41
4508 5255 7.072263 AGATGTATCTAGATTTTGGGGACAG 57.928 40.000 11.25 0.00 37.16 3.51
4528 5275 9.566530 CGTCTTAGATTTGTCTGGATATAGATG 57.433 37.037 0.00 0.00 0.00 2.90
4529 5276 9.521841 TCGTCTTAGATTTGTCTGGATATAGAT 57.478 33.333 0.00 0.00 0.00 1.98
4530 5277 8.919777 TCGTCTTAGATTTGTCTGGATATAGA 57.080 34.615 0.00 0.00 0.00 1.98
4531 5278 7.753132 GCTCGTCTTAGATTTGTCTGGATATAG 59.247 40.741 0.00 0.00 0.00 1.31
4532 5279 7.448777 AGCTCGTCTTAGATTTGTCTGGATATA 59.551 37.037 0.00 0.00 0.00 0.86
4533 5280 6.266558 AGCTCGTCTTAGATTTGTCTGGATAT 59.733 38.462 0.00 0.00 0.00 1.63
4534 5281 5.594725 AGCTCGTCTTAGATTTGTCTGGATA 59.405 40.000 0.00 0.00 0.00 2.59
4535 5282 4.404073 AGCTCGTCTTAGATTTGTCTGGAT 59.596 41.667 0.00 0.00 0.00 3.41
4536 5283 3.764434 AGCTCGTCTTAGATTTGTCTGGA 59.236 43.478 0.00 0.00 0.00 3.86
4537 5284 4.116747 AGCTCGTCTTAGATTTGTCTGG 57.883 45.455 0.00 0.00 0.00 3.86
4538 5285 6.473397 AAAAGCTCGTCTTAGATTTGTCTG 57.527 37.500 0.00 0.00 35.39 3.51
4539 5286 6.073003 CCAAAAAGCTCGTCTTAGATTTGTCT 60.073 38.462 0.00 0.00 35.39 3.41
4540 5287 6.080406 CCAAAAAGCTCGTCTTAGATTTGTC 58.920 40.000 0.00 0.00 35.39 3.18
4541 5288 5.048713 CCCAAAAAGCTCGTCTTAGATTTGT 60.049 40.000 0.00 0.00 35.39 2.83
4542 5289 5.181245 TCCCAAAAAGCTCGTCTTAGATTTG 59.819 40.000 0.00 0.00 35.39 2.32
4543 5290 5.181433 GTCCCAAAAAGCTCGTCTTAGATTT 59.819 40.000 0.00 0.00 36.69 2.17
4544 5291 4.695928 GTCCCAAAAAGCTCGTCTTAGATT 59.304 41.667 0.00 0.00 33.88 2.40
4545 5292 4.254492 GTCCCAAAAAGCTCGTCTTAGAT 58.746 43.478 0.00 0.00 33.88 1.98
4546 5293 3.660865 GTCCCAAAAAGCTCGTCTTAGA 58.339 45.455 0.00 0.00 33.88 2.10
4547 5294 2.412089 CGTCCCAAAAAGCTCGTCTTAG 59.588 50.000 0.00 0.00 33.88 2.18
4548 5295 2.409975 CGTCCCAAAAAGCTCGTCTTA 58.590 47.619 0.00 0.00 33.88 2.10
4549 5296 1.226746 CGTCCCAAAAAGCTCGTCTT 58.773 50.000 0.00 0.00 36.34 3.01
4550 5297 0.602905 CCGTCCCAAAAAGCTCGTCT 60.603 55.000 0.00 0.00 0.00 4.18
4551 5298 0.601841 TCCGTCCCAAAAAGCTCGTC 60.602 55.000 0.00 0.00 0.00 4.20
4552 5299 0.602905 CTCCGTCCCAAAAAGCTCGT 60.603 55.000 0.00 0.00 0.00 4.18
4553 5300 1.298859 CCTCCGTCCCAAAAAGCTCG 61.299 60.000 0.00 0.00 0.00 5.03
4554 5301 0.250770 ACCTCCGTCCCAAAAAGCTC 60.251 55.000 0.00 0.00 0.00 4.09
4555 5302 1.003233 CTACCTCCGTCCCAAAAAGCT 59.997 52.381 0.00 0.00 0.00 3.74
4556 5303 1.450025 CTACCTCCGTCCCAAAAAGC 58.550 55.000 0.00 0.00 0.00 3.51
4557 5304 1.339727 CCCTACCTCCGTCCCAAAAAG 60.340 57.143 0.00 0.00 0.00 2.27
4558 5305 0.694196 CCCTACCTCCGTCCCAAAAA 59.306 55.000 0.00 0.00 0.00 1.94
4559 5306 0.178897 TCCCTACCTCCGTCCCAAAA 60.179 55.000 0.00 0.00 0.00 2.44
4560 5307 0.616679 CTCCCTACCTCCGTCCCAAA 60.617 60.000 0.00 0.00 0.00 3.28
4561 5308 1.001248 CTCCCTACCTCCGTCCCAA 59.999 63.158 0.00 0.00 0.00 4.12
4562 5309 2.220786 GACTCCCTACCTCCGTCCCA 62.221 65.000 0.00 0.00 0.00 4.37
4563 5310 1.455402 GACTCCCTACCTCCGTCCC 60.455 68.421 0.00 0.00 0.00 4.46
4564 5311 0.106116 ATGACTCCCTACCTCCGTCC 60.106 60.000 0.00 0.00 0.00 4.79
4565 5312 1.682323 GAATGACTCCCTACCTCCGTC 59.318 57.143 0.00 0.00 0.00 4.79
4566 5313 1.777941 GAATGACTCCCTACCTCCGT 58.222 55.000 0.00 0.00 0.00 4.69
4567 5314 0.669077 CGAATGACTCCCTACCTCCG 59.331 60.000 0.00 0.00 0.00 4.63
4568 5315 0.389757 GCGAATGACTCCCTACCTCC 59.610 60.000 0.00 0.00 0.00 4.30
4569 5316 1.112113 TGCGAATGACTCCCTACCTC 58.888 55.000 0.00 0.00 0.00 3.85
4570 5317 1.207329 GTTGCGAATGACTCCCTACCT 59.793 52.381 0.00 0.00 0.00 3.08
4571 5318 1.207329 AGTTGCGAATGACTCCCTACC 59.793 52.381 0.00 0.00 0.00 3.18
4586 5333 4.403453 CGCAACCTAATTAGTTGAGTTGC 58.597 43.478 28.90 28.90 46.03 4.17
4618 5365 5.984926 GCTCATCTTGAATTTTGTTTCCACA 59.015 36.000 0.00 0.00 0.00 4.17
4631 5378 9.797556 CTGATCAAAATAATTGCTCATCTTGAA 57.202 29.630 0.00 0.00 0.00 2.69
4647 5394 6.479884 ACAGAACCTAAGAGCTGATCAAAAT 58.520 36.000 0.00 0.00 32.86 1.82
4660 5408 5.473504 ACTTTGCAACCATACAGAACCTAAG 59.526 40.000 0.00 0.00 0.00 2.18
4668 5416 7.945033 ATTGTTTTACTTTGCAACCATACAG 57.055 32.000 0.00 0.00 0.00 2.74
4688 5436 8.579006 TCATGTTCAAAGAAGAGCATTTATTGT 58.421 29.630 0.00 0.00 37.35 2.71
4689 5437 8.975410 TCATGTTCAAAGAAGAGCATTTATTG 57.025 30.769 0.00 0.00 37.35 1.90
4693 5441 8.114331 TGTATCATGTTCAAAGAAGAGCATTT 57.886 30.769 0.00 0.00 37.35 2.32
4696 5444 7.532571 CAATGTATCATGTTCAAAGAAGAGCA 58.467 34.615 0.00 0.00 33.24 4.26
4722 5470 4.021280 TCACCATCACATTCATTTTGTGGG 60.021 41.667 4.18 1.72 43.67 4.61
4812 5561 2.407090 CTTCAGCATCAGACGTGTTGA 58.593 47.619 0.00 0.00 35.45 3.18
4813 5562 1.462283 CCTTCAGCATCAGACGTGTTG 59.538 52.381 0.00 0.00 0.00 3.33
4814 5563 1.344438 TCCTTCAGCATCAGACGTGTT 59.656 47.619 0.00 0.00 0.00 3.32
4817 5566 1.338200 GGTTCCTTCAGCATCAGACGT 60.338 52.381 0.00 0.00 0.00 4.34
4819 5568 2.479566 TGGTTCCTTCAGCATCAGAC 57.520 50.000 0.00 0.00 0.00 3.51
4821 5570 4.095483 GTGTTATGGTTCCTTCAGCATCAG 59.905 45.833 0.00 0.00 36.32 2.90
4861 5623 6.623743 GTGAAAAGCAGAATTATAAGTACGCG 59.376 38.462 3.53 3.53 0.00 6.01
4862 5624 7.636359 CAGTGAAAAGCAGAATTATAAGTACGC 59.364 37.037 0.00 0.00 0.00 4.42
4888 5650 8.732746 ATTGTTTATATCACCACCTACAGAAC 57.267 34.615 0.00 0.00 0.00 3.01
4989 5751 2.295629 TGCAATCACGCTTTGGAATGAA 59.704 40.909 0.00 0.00 0.00 2.57
5069 7112 5.594926 ACTTTGCTGTCCTTCAAATTCTTG 58.405 37.500 0.00 0.00 32.51 3.02
5190 7243 4.809673 CTTAATTTGGAACCTGCAAGACC 58.190 43.478 0.00 0.00 34.07 3.85
5255 7312 2.045926 CACCTAGCCCACTGCACC 60.046 66.667 0.00 0.00 44.83 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.