Multiple sequence alignment - TraesCS6A01G321500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G321500 chr6A 100.000 6059 0 0 1 6059 555936083 555930025 0.000000e+00 11189.0
1 TraesCS6A01G321500 chr6A 93.224 487 33 0 5573 6059 531448977 531448491 0.000000e+00 717.0
2 TraesCS6A01G321500 chr6B 94.622 2101 82 14 2006 4098 617982958 617980881 0.000000e+00 3225.0
3 TraesCS6A01G321500 chr6B 88.257 1354 86 42 690 1997 617984482 617983156 0.000000e+00 1552.0
4 TraesCS6A01G321500 chr6B 87.284 464 34 10 4785 5229 617980035 617979578 1.950000e-139 507.0
5 TraesCS6A01G321500 chr6B 90.000 380 29 5 4110 4486 617980729 617980356 3.280000e-132 483.0
6 TraesCS6A01G321500 chr6B 93.548 186 11 1 5235 5420 617979530 617979346 5.980000e-70 276.0
7 TraesCS6A01G321500 chr6B 89.474 152 5 4 1867 2009 617983153 617983004 1.340000e-41 182.0
8 TraesCS6A01G321500 chr6B 87.037 108 5 3 423 529 617984862 617984763 4.960000e-21 113.0
9 TraesCS6A01G321500 chr6D 93.938 2095 66 21 2006 4090 411193361 411191318 0.000000e+00 3109.0
10 TraesCS6A01G321500 chr6D 96.051 1494 36 9 4089 5572 411191146 411189666 0.000000e+00 2410.0
11 TraesCS6A01G321500 chr6D 93.349 872 38 8 1133 1997 411194401 411193543 0.000000e+00 1271.0
12 TraesCS6A01G321500 chr6D 89.971 339 16 8 551 882 411196138 411195811 7.260000e-114 422.0
13 TraesCS6A01G321500 chr6D 95.238 147 7 0 951 1097 411194548 411194402 3.650000e-57 233.0
14 TraesCS6A01G321500 chr6D 95.105 143 5 2 1867 2009 411193540 411193400 2.200000e-54 224.0
15 TraesCS6A01G321500 chr6D 88.496 113 4 3 418 529 411197941 411197837 1.770000e-25 128.0
16 TraesCS6A01G321500 chr6D 90.110 91 0 3 439 529 411197414 411197333 6.420000e-20 110.0
17 TraesCS6A01G321500 chr6D 86.316 95 4 3 435 529 411197801 411197716 1.800000e-15 95.3
18 TraesCS6A01G321500 chr5D 88.272 1134 101 18 2012 3139 326459938 326458831 0.000000e+00 1328.0
19 TraesCS6A01G321500 chr5D 90.461 933 75 10 3150 4077 326458847 326457924 0.000000e+00 1218.0
20 TraesCS6A01G321500 chr5D 94.262 488 26 2 5573 6059 465899481 465898995 0.000000e+00 745.0
21 TraesCS6A01G321500 chr5D 80.000 1050 127 44 1001 1993 326461127 326460104 0.000000e+00 699.0
22 TraesCS6A01G321500 chr5D 91.209 364 30 2 4125 4486 326457478 326457115 1.520000e-135 494.0
23 TraesCS6A01G321500 chr5D 77.143 665 100 26 4784 5420 326457014 326456374 7.520000e-89 339.0
24 TraesCS6A01G321500 chr5A 87.930 1135 103 21 2012 3139 429982254 429983361 0.000000e+00 1306.0
25 TraesCS6A01G321500 chr5A 90.426 940 75 11 3150 4084 429983345 429984274 0.000000e+00 1223.0
26 TraesCS6A01G321500 chr5A 79.068 1051 138 44 1001 1992 429981067 429982094 0.000000e+00 647.0
27 TraesCS6A01G321500 chr5A 90.000 390 30 4 4104 4486 429984687 429985074 4.220000e-136 496.0
28 TraesCS6A01G321500 chr5A 84.229 279 37 7 4784 5058 429985177 429985452 1.290000e-66 265.0
29 TraesCS6A01G321500 chr5A 82.143 140 12 3 5086 5225 429985450 429985576 2.310000e-19 108.0
30 TraesCS6A01G321500 chr5B 87.773 1145 102 23 2012 3139 379001013 378999890 0.000000e+00 1304.0
31 TraesCS6A01G321500 chr5B 91.304 920 71 7 3176 4090 378999885 378998970 0.000000e+00 1247.0
32 TraesCS6A01G321500 chr5B 79.380 1033 143 31 1001 1982 379002203 379001190 0.000000e+00 664.0
33 TraesCS6A01G321500 chr5B 90.144 487 35 7 5573 6059 444766767 444766294 6.670000e-174 621.0
34 TraesCS6A01G321500 chr5B 89.344 488 38 8 5573 6059 444767325 444766851 8.690000e-168 601.0
35 TraesCS6A01G321500 chr5B 92.055 365 27 2 4125 4487 378998695 378998331 4.190000e-141 512.0
36 TraesCS6A01G321500 chr5B 77.419 651 73 40 4784 5405 378998232 378997627 2.720000e-83 320.0
37 TraesCS6A01G321500 chr7B 88.595 491 45 7 5571 6059 234598204 234597723 2.430000e-163 586.0
38 TraesCS6A01G321500 chr7B 88.683 486 44 7 5574 6057 677354653 677354177 3.150000e-162 582.0
39 TraesCS6A01G321500 chr2A 88.548 489 47 2 5572 6059 769344269 769344749 8.750000e-163 584.0
40 TraesCS6A01G321500 chrUn 88.477 486 46 6 5573 6057 236405118 236404642 4.070000e-161 579.0
41 TraesCS6A01G321500 chr3B 87.885 487 49 6 5568 6053 772410401 772409924 1.140000e-156 564.0
42 TraesCS6A01G321500 chr4A 91.463 410 26 2 5569 5978 11753541 11753141 6.860000e-154 555.0
43 TraesCS6A01G321500 chr7D 88.571 420 36 6 5643 6059 21710048 21709638 3.260000e-137 499.0
44 TraesCS6A01G321500 chr2D 82.377 244 24 11 603 839 600606259 600606490 1.720000e-45 195.0
45 TraesCS6A01G321500 chr2B 88.312 154 9 5 687 833 796159194 796159043 6.240000e-40 176.0
46 TraesCS6A01G321500 chr2B 80.745 161 15 6 709 853 711161085 711161245 1.790000e-20 111.0
47 TraesCS6A01G321500 chr3D 88.722 133 10 4 5436 5564 583295248 583295379 2.260000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G321500 chr6A 555930025 555936083 6058 True 11189.000000 11189 100.000000 1 6059 1 chr6A.!!$R2 6058
1 TraesCS6A01G321500 chr6B 617979346 617984862 5516 True 905.428571 3225 90.031714 423 5420 7 chr6B.!!$R1 4997
2 TraesCS6A01G321500 chr6D 411189666 411197941 8275 True 889.144444 3109 92.063778 418 5572 9 chr6D.!!$R1 5154
3 TraesCS6A01G321500 chr5D 326456374 326461127 4753 True 815.600000 1328 85.417000 1001 5420 5 chr5D.!!$R2 4419
4 TraesCS6A01G321500 chr5A 429981067 429985576 4509 False 674.166667 1306 85.632667 1001 5225 6 chr5A.!!$F1 4224
5 TraesCS6A01G321500 chr5B 378997627 379002203 4576 True 809.400000 1304 85.586200 1001 5405 5 chr5B.!!$R1 4404
6 TraesCS6A01G321500 chr5B 444766294 444767325 1031 True 611.000000 621 89.744000 5573 6059 2 chr5B.!!$R2 486

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
296 297 0.033504 AACAGCACCGTTCATCGTCT 59.966 50.000 0.00 0.00 37.94 4.18 F
911 2684 0.036306 GTCGAACCACACCAGGGAAT 59.964 55.000 0.00 0.00 0.00 3.01 F
1400 4421 0.116143 AGGTGAGTTCCCTCTCTGCT 59.884 55.000 0.00 0.00 38.61 4.24 F
1521 4554 1.103398 ATATTGCACGGAAGGCTGCC 61.103 55.000 11.65 11.65 31.97 4.85 F
1630 4680 2.601314 CGTCGGAGAGATATAGAGCTCG 59.399 54.545 8.37 0.00 43.19 5.03 F
3470 6881 2.618709 GGTGTCTTTGCTGCAGTTTAGT 59.381 45.455 16.64 0.00 0.00 2.24 F
3476 6887 3.988379 TTGCTGCAGTTTAGTCAAAGG 57.012 42.857 16.64 0.00 0.00 3.11 F
5000 9140 2.106338 TCAAAGTGATCAAGGACTGGCA 59.894 45.455 0.00 0.00 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1861 4944 0.322816 TCTTGCAACTCATCCCTGGC 60.323 55.000 0.00 0.0 0.00 4.85 R
2324 5714 2.684881 ACAGTCAACAAGCAGAGGTTTG 59.315 45.455 0.00 0.0 40.62 2.93 R
2873 6273 4.065088 TCACTGAACCTGTTACATCAAGC 58.935 43.478 0.00 0.0 0.00 4.01 R
3404 6815 2.644299 ACCACCAGATTGATGGACTTGA 59.356 45.455 0.00 0.0 43.57 3.02 R
3476 6887 6.200854 CAGACAGCAACCTCAAATTAAAAACC 59.799 38.462 0.00 0.0 0.00 3.27 R
4590 8429 0.253044 TGAGTTGTGATGCCCTAGCC 59.747 55.000 0.00 0.0 38.69 3.93 R
5012 9152 0.387202 CTCACTACAGCTGATCCCCG 59.613 60.000 23.35 3.5 0.00 5.73 R
5863 10644 0.034896 CGGGGATACGAATTGGGGAG 59.965 60.000 0.00 0.0 35.47 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.721793 GGAGATCCCATTCAGCAGG 57.278 57.895 0.00 0.00 34.14 4.85
31 32 0.536915 GGAGATCCCATTCAGCAGGC 60.537 60.000 0.00 0.00 34.14 4.85
32 33 0.182061 GAGATCCCATTCAGCAGGCA 59.818 55.000 0.00 0.00 0.00 4.75
33 34 0.851469 AGATCCCATTCAGCAGGCAT 59.149 50.000 0.00 0.00 0.00 4.40
34 35 1.217183 AGATCCCATTCAGCAGGCATT 59.783 47.619 0.00 0.00 0.00 3.56
35 36 1.340248 GATCCCATTCAGCAGGCATTG 59.660 52.381 0.00 0.00 0.00 2.82
47 48 2.680577 CAGGCATTGCTTTCCAAAGAC 58.319 47.619 8.82 0.00 38.28 3.01
48 49 1.270550 AGGCATTGCTTTCCAAAGACG 59.729 47.619 8.82 0.00 35.35 4.18
49 50 1.000274 GGCATTGCTTTCCAAAGACGT 60.000 47.619 8.82 0.00 38.28 4.34
50 51 2.545742 GGCATTGCTTTCCAAAGACGTT 60.546 45.455 8.82 0.00 38.28 3.99
51 52 3.123050 GCATTGCTTTCCAAAGACGTTT 58.877 40.909 0.16 0.00 38.28 3.60
52 53 3.555547 GCATTGCTTTCCAAAGACGTTTT 59.444 39.130 0.16 0.00 38.28 2.43
53 54 4.550639 GCATTGCTTTCCAAAGACGTTTTG 60.551 41.667 0.16 13.08 38.28 2.44
54 55 2.535331 TGCTTTCCAAAGACGTTTTGC 58.465 42.857 14.06 4.32 38.28 3.68
55 56 2.094494 TGCTTTCCAAAGACGTTTTGCA 60.094 40.909 14.06 6.47 38.28 4.08
56 57 3.123050 GCTTTCCAAAGACGTTTTGCAT 58.877 40.909 14.06 0.00 38.28 3.96
57 58 3.555547 GCTTTCCAAAGACGTTTTGCATT 59.444 39.130 14.06 0.00 38.28 3.56
58 59 4.742659 GCTTTCCAAAGACGTTTTGCATTA 59.257 37.500 14.06 2.13 38.28 1.90
59 60 5.233263 GCTTTCCAAAGACGTTTTGCATTAA 59.767 36.000 14.06 6.27 38.28 1.40
60 61 6.073819 GCTTTCCAAAGACGTTTTGCATTAAT 60.074 34.615 14.06 0.00 38.28 1.40
61 62 6.761731 TTCCAAAGACGTTTTGCATTAATG 57.238 33.333 11.27 11.27 0.00 1.90
62 63 8.036090 CTTTCCAAAGACGTTTTGCATTAATGC 61.036 37.037 29.58 29.58 44.96 3.56
82 83 4.102035 GCAAGAGCAAAAGGTATGGAAG 57.898 45.455 0.00 0.00 41.58 3.46
83 84 3.119352 GCAAGAGCAAAAGGTATGGAAGG 60.119 47.826 0.00 0.00 41.58 3.46
84 85 4.335416 CAAGAGCAAAAGGTATGGAAGGA 58.665 43.478 0.00 0.00 0.00 3.36
85 86 4.657814 AGAGCAAAAGGTATGGAAGGAA 57.342 40.909 0.00 0.00 0.00 3.36
86 87 5.198602 AGAGCAAAAGGTATGGAAGGAAT 57.801 39.130 0.00 0.00 0.00 3.01
87 88 5.196695 AGAGCAAAAGGTATGGAAGGAATC 58.803 41.667 0.00 0.00 0.00 2.52
88 89 5.044550 AGAGCAAAAGGTATGGAAGGAATCT 60.045 40.000 0.00 0.00 0.00 2.40
89 90 5.583932 AGCAAAAGGTATGGAAGGAATCTT 58.416 37.500 0.00 0.00 35.62 2.40
90 91 5.654209 AGCAAAAGGTATGGAAGGAATCTTC 59.346 40.000 0.00 0.00 46.47 2.87
102 103 3.625649 GGAATCTTCCTCTTCACAGCT 57.374 47.619 1.57 0.00 44.11 4.24
103 104 4.744795 GGAATCTTCCTCTTCACAGCTA 57.255 45.455 1.57 0.00 44.11 3.32
104 105 4.438148 GGAATCTTCCTCTTCACAGCTAC 58.562 47.826 1.57 0.00 44.11 3.58
105 106 4.081420 GGAATCTTCCTCTTCACAGCTACA 60.081 45.833 1.57 0.00 44.11 2.74
106 107 5.482908 GAATCTTCCTCTTCACAGCTACAA 58.517 41.667 0.00 0.00 0.00 2.41
107 108 4.955811 TCTTCCTCTTCACAGCTACAAA 57.044 40.909 0.00 0.00 0.00 2.83
108 109 5.489792 TCTTCCTCTTCACAGCTACAAAT 57.510 39.130 0.00 0.00 0.00 2.32
109 110 5.482908 TCTTCCTCTTCACAGCTACAAATC 58.517 41.667 0.00 0.00 0.00 2.17
110 111 3.849911 TCCTCTTCACAGCTACAAATCG 58.150 45.455 0.00 0.00 0.00 3.34
111 112 2.932614 CCTCTTCACAGCTACAAATCGG 59.067 50.000 0.00 0.00 0.00 4.18
112 113 3.368427 CCTCTTCACAGCTACAAATCGGA 60.368 47.826 0.00 0.00 0.00 4.55
113 114 3.585862 TCTTCACAGCTACAAATCGGAC 58.414 45.455 0.00 0.00 0.00 4.79
114 115 3.006430 TCTTCACAGCTACAAATCGGACA 59.994 43.478 0.00 0.00 0.00 4.02
115 116 2.683968 TCACAGCTACAAATCGGACAC 58.316 47.619 0.00 0.00 0.00 3.67
116 117 2.036604 TCACAGCTACAAATCGGACACA 59.963 45.455 0.00 0.00 0.00 3.72
117 118 3.002791 CACAGCTACAAATCGGACACAT 58.997 45.455 0.00 0.00 0.00 3.21
118 119 4.081917 TCACAGCTACAAATCGGACACATA 60.082 41.667 0.00 0.00 0.00 2.29
119 120 4.268644 CACAGCTACAAATCGGACACATAG 59.731 45.833 0.00 0.00 0.00 2.23
120 121 3.246226 CAGCTACAAATCGGACACATAGC 59.754 47.826 0.00 0.00 34.99 2.97
121 122 3.118775 AGCTACAAATCGGACACATAGCA 60.119 43.478 12.79 0.00 36.79 3.49
122 123 3.001330 GCTACAAATCGGACACATAGCAC 59.999 47.826 7.79 0.00 34.92 4.40
123 124 3.334583 ACAAATCGGACACATAGCACT 57.665 42.857 0.00 0.00 0.00 4.40
124 125 3.674997 ACAAATCGGACACATAGCACTT 58.325 40.909 0.00 0.00 0.00 3.16
125 126 3.436704 ACAAATCGGACACATAGCACTTG 59.563 43.478 0.00 0.00 0.00 3.16
126 127 3.334583 AATCGGACACATAGCACTTGT 57.665 42.857 0.00 0.00 0.00 3.16
127 128 2.831685 TCGGACACATAGCACTTGTT 57.168 45.000 0.00 0.00 0.00 2.83
128 129 3.120321 TCGGACACATAGCACTTGTTT 57.880 42.857 0.00 0.00 0.00 2.83
129 130 3.064207 TCGGACACATAGCACTTGTTTC 58.936 45.455 0.00 0.00 0.00 2.78
130 131 2.159627 CGGACACATAGCACTTGTTTCC 59.840 50.000 8.17 8.17 39.50 3.13
131 132 3.146066 GGACACATAGCACTTGTTTCCA 58.854 45.455 11.71 0.00 41.51 3.53
132 133 3.189287 GGACACATAGCACTTGTTTCCAG 59.811 47.826 11.71 0.00 41.51 3.86
133 134 4.065088 GACACATAGCACTTGTTTCCAGA 58.935 43.478 0.00 0.00 0.00 3.86
134 135 4.655963 ACACATAGCACTTGTTTCCAGAT 58.344 39.130 0.00 0.00 0.00 2.90
135 136 5.072741 ACACATAGCACTTGTTTCCAGATT 58.927 37.500 0.00 0.00 0.00 2.40
136 137 5.536161 ACACATAGCACTTGTTTCCAGATTT 59.464 36.000 0.00 0.00 0.00 2.17
137 138 6.088824 CACATAGCACTTGTTTCCAGATTTC 58.911 40.000 0.00 0.00 0.00 2.17
138 139 6.006449 ACATAGCACTTGTTTCCAGATTTCT 58.994 36.000 0.00 0.00 0.00 2.52
139 140 6.491403 ACATAGCACTTGTTTCCAGATTTCTT 59.509 34.615 0.00 0.00 0.00 2.52
140 141 5.859205 AGCACTTGTTTCCAGATTTCTTT 57.141 34.783 0.00 0.00 0.00 2.52
141 142 6.225981 AGCACTTGTTTCCAGATTTCTTTT 57.774 33.333 0.00 0.00 0.00 2.27
142 143 6.276091 AGCACTTGTTTCCAGATTTCTTTTC 58.724 36.000 0.00 0.00 0.00 2.29
143 144 6.097412 AGCACTTGTTTCCAGATTTCTTTTCT 59.903 34.615 0.00 0.00 0.00 2.52
144 145 6.199719 GCACTTGTTTCCAGATTTCTTTTCTG 59.800 38.462 0.00 0.00 40.25 3.02
145 146 7.260603 CACTTGTTTCCAGATTTCTTTTCTGT 58.739 34.615 0.00 0.00 39.16 3.41
146 147 7.761249 CACTTGTTTCCAGATTTCTTTTCTGTT 59.239 33.333 0.00 0.00 39.16 3.16
147 148 8.314021 ACTTGTTTCCAGATTTCTTTTCTGTTT 58.686 29.630 0.00 0.00 39.16 2.83
148 149 8.477984 TTGTTTCCAGATTTCTTTTCTGTTTG 57.522 30.769 0.00 0.00 39.16 2.93
149 150 7.610865 TGTTTCCAGATTTCTTTTCTGTTTGT 58.389 30.769 0.00 0.00 39.16 2.83
150 151 8.093927 TGTTTCCAGATTTCTTTTCTGTTTGTT 58.906 29.630 0.00 0.00 39.16 2.83
151 152 8.595533 GTTTCCAGATTTCTTTTCTGTTTGTTC 58.404 33.333 0.00 0.00 39.16 3.18
152 153 7.645058 TCCAGATTTCTTTTCTGTTTGTTCT 57.355 32.000 0.00 0.00 39.16 3.01
153 154 8.066612 TCCAGATTTCTTTTCTGTTTGTTCTT 57.933 30.769 0.00 0.00 39.16 2.52
154 155 8.190784 TCCAGATTTCTTTTCTGTTTGTTCTTC 58.809 33.333 0.00 0.00 39.16 2.87
155 156 7.436376 CCAGATTTCTTTTCTGTTTGTTCTTCC 59.564 37.037 0.00 0.00 39.16 3.46
156 157 7.975616 CAGATTTCTTTTCTGTTTGTTCTTCCA 59.024 33.333 0.00 0.00 36.64 3.53
157 158 8.531146 AGATTTCTTTTCTGTTTGTTCTTCCAA 58.469 29.630 0.00 0.00 0.00 3.53
158 159 8.707938 ATTTCTTTTCTGTTTGTTCTTCCAAG 57.292 30.769 0.00 0.00 0.00 3.61
159 160 6.834168 TCTTTTCTGTTTGTTCTTCCAAGT 57.166 33.333 0.00 0.00 0.00 3.16
160 161 7.931578 TCTTTTCTGTTTGTTCTTCCAAGTA 57.068 32.000 0.00 0.00 0.00 2.24
161 162 7.985476 TCTTTTCTGTTTGTTCTTCCAAGTAG 58.015 34.615 0.00 0.00 0.00 2.57
162 163 5.751243 TTCTGTTTGTTCTTCCAAGTAGC 57.249 39.130 0.00 0.00 0.00 3.58
163 164 4.776349 TCTGTTTGTTCTTCCAAGTAGCA 58.224 39.130 0.00 0.00 0.00 3.49
164 165 5.189928 TCTGTTTGTTCTTCCAAGTAGCAA 58.810 37.500 0.00 0.00 0.00 3.91
165 166 5.296780 TCTGTTTGTTCTTCCAAGTAGCAAG 59.703 40.000 0.00 0.00 0.00 4.01
166 167 5.189928 TGTTTGTTCTTCCAAGTAGCAAGA 58.810 37.500 0.00 0.00 0.00 3.02
167 168 5.296780 TGTTTGTTCTTCCAAGTAGCAAGAG 59.703 40.000 0.00 0.00 0.00 2.85
168 169 4.955811 TGTTCTTCCAAGTAGCAAGAGA 57.044 40.909 0.00 0.00 0.00 3.10
169 170 4.887748 TGTTCTTCCAAGTAGCAAGAGAG 58.112 43.478 0.00 0.00 0.00 3.20
170 171 4.345257 TGTTCTTCCAAGTAGCAAGAGAGT 59.655 41.667 0.00 0.00 0.00 3.24
171 172 4.792521 TCTTCCAAGTAGCAAGAGAGTC 57.207 45.455 0.00 0.00 0.00 3.36
172 173 4.411927 TCTTCCAAGTAGCAAGAGAGTCT 58.588 43.478 0.00 0.00 0.00 3.24
173 174 4.219507 TCTTCCAAGTAGCAAGAGAGTCTG 59.780 45.833 0.00 0.00 0.00 3.51
174 175 3.501349 TCCAAGTAGCAAGAGAGTCTGT 58.499 45.455 0.00 0.00 0.00 3.41
175 176 4.663334 TCCAAGTAGCAAGAGAGTCTGTA 58.337 43.478 0.00 0.00 0.00 2.74
176 177 4.702612 TCCAAGTAGCAAGAGAGTCTGTAG 59.297 45.833 0.00 0.00 0.00 2.74
177 178 4.420168 CAAGTAGCAAGAGAGTCTGTAGC 58.580 47.826 0.00 0.00 0.00 3.58
178 179 3.963129 AGTAGCAAGAGAGTCTGTAGCT 58.037 45.455 0.00 6.21 35.26 3.32
179 180 5.105567 AGTAGCAAGAGAGTCTGTAGCTA 57.894 43.478 0.00 5.17 33.79 3.32
180 181 5.502079 AGTAGCAAGAGAGTCTGTAGCTAA 58.498 41.667 14.94 2.45 35.47 3.09
181 182 6.126409 AGTAGCAAGAGAGTCTGTAGCTAAT 58.874 40.000 14.94 12.45 35.47 1.73
182 183 5.514274 AGCAAGAGAGTCTGTAGCTAATC 57.486 43.478 0.00 0.00 31.23 1.75
183 184 5.200483 AGCAAGAGAGTCTGTAGCTAATCT 58.800 41.667 0.00 0.00 31.23 2.40
184 185 5.656416 AGCAAGAGAGTCTGTAGCTAATCTT 59.344 40.000 0.00 0.00 31.23 2.40
185 186 5.977129 GCAAGAGAGTCTGTAGCTAATCTTC 59.023 44.000 0.00 0.00 0.00 2.87
186 187 6.405286 GCAAGAGAGTCTGTAGCTAATCTTCA 60.405 42.308 0.00 0.00 0.00 3.02
187 188 7.684187 GCAAGAGAGTCTGTAGCTAATCTTCAT 60.684 40.741 0.00 0.00 0.00 2.57
188 189 7.275888 AGAGAGTCTGTAGCTAATCTTCATG 57.724 40.000 0.00 0.00 0.00 3.07
189 190 5.841810 AGAGTCTGTAGCTAATCTTCATGC 58.158 41.667 0.00 0.00 0.00 4.06
190 191 5.362143 AGAGTCTGTAGCTAATCTTCATGCA 59.638 40.000 0.00 0.00 0.00 3.96
191 192 5.982356 AGTCTGTAGCTAATCTTCATGCAA 58.018 37.500 0.00 0.00 0.00 4.08
192 193 6.409704 AGTCTGTAGCTAATCTTCATGCAAA 58.590 36.000 0.00 0.00 0.00 3.68
193 194 6.881065 AGTCTGTAGCTAATCTTCATGCAAAA 59.119 34.615 0.00 0.00 0.00 2.44
194 195 7.555554 AGTCTGTAGCTAATCTTCATGCAAAAT 59.444 33.333 0.00 0.00 0.00 1.82
195 196 8.186821 GTCTGTAGCTAATCTTCATGCAAAATT 58.813 33.333 0.00 0.00 0.00 1.82
196 197 8.400947 TCTGTAGCTAATCTTCATGCAAAATTC 58.599 33.333 0.00 0.00 0.00 2.17
197 198 8.054152 TGTAGCTAATCTTCATGCAAAATTCA 57.946 30.769 0.00 0.00 0.00 2.57
198 199 8.186163 TGTAGCTAATCTTCATGCAAAATTCAG 58.814 33.333 0.00 0.00 0.00 3.02
199 200 7.166691 AGCTAATCTTCATGCAAAATTCAGT 57.833 32.000 0.00 0.00 0.00 3.41
200 201 8.284945 AGCTAATCTTCATGCAAAATTCAGTA 57.715 30.769 0.00 0.00 0.00 2.74
201 202 8.186821 AGCTAATCTTCATGCAAAATTCAGTAC 58.813 33.333 0.00 0.00 0.00 2.73
202 203 8.186821 GCTAATCTTCATGCAAAATTCAGTACT 58.813 33.333 0.00 0.00 0.00 2.73
207 208 8.514594 TCTTCATGCAAAATTCAGTACTTTAGG 58.485 33.333 0.00 0.00 0.00 2.69
208 209 6.620678 TCATGCAAAATTCAGTACTTTAGGC 58.379 36.000 0.00 0.00 0.00 3.93
209 210 5.041951 TGCAAAATTCAGTACTTTAGGCG 57.958 39.130 0.00 0.00 0.00 5.52
210 211 4.083003 TGCAAAATTCAGTACTTTAGGCGG 60.083 41.667 0.00 0.00 0.00 6.13
211 212 4.155280 GCAAAATTCAGTACTTTAGGCGGA 59.845 41.667 0.00 0.00 0.00 5.54
212 213 5.673818 GCAAAATTCAGTACTTTAGGCGGAG 60.674 44.000 0.00 0.00 0.00 4.63
226 227 3.775654 GGAGCCGGAGTGGACCAG 61.776 72.222 5.05 0.00 42.00 4.00
227 228 2.680352 GAGCCGGAGTGGACCAGA 60.680 66.667 5.05 0.00 42.00 3.86
228 229 2.039624 AGCCGGAGTGGACCAGAT 59.960 61.111 5.05 0.00 42.00 2.90
229 230 0.755698 GAGCCGGAGTGGACCAGATA 60.756 60.000 5.05 0.00 42.00 1.98
230 231 1.043673 AGCCGGAGTGGACCAGATAC 61.044 60.000 5.05 0.00 42.00 2.24
231 232 1.327690 GCCGGAGTGGACCAGATACA 61.328 60.000 5.05 0.00 42.00 2.29
232 233 0.460311 CCGGAGTGGACCAGATACAC 59.540 60.000 0.00 0.00 43.40 2.90
238 239 3.252974 GTGGACCAGATACACTTCCAG 57.747 52.381 0.00 0.00 39.36 3.86
239 240 1.555075 TGGACCAGATACACTTCCAGC 59.445 52.381 0.00 0.00 32.48 4.85
240 241 1.134371 GGACCAGATACACTTCCAGCC 60.134 57.143 0.00 0.00 0.00 4.85
241 242 1.555075 GACCAGATACACTTCCAGCCA 59.445 52.381 0.00 0.00 0.00 4.75
242 243 2.171448 GACCAGATACACTTCCAGCCAT 59.829 50.000 0.00 0.00 0.00 4.40
243 244 2.171448 ACCAGATACACTTCCAGCCATC 59.829 50.000 0.00 0.00 0.00 3.51
244 245 2.486191 CCAGATACACTTCCAGCCATCC 60.486 54.545 0.00 0.00 0.00 3.51
245 246 1.771255 AGATACACTTCCAGCCATCCC 59.229 52.381 0.00 0.00 0.00 3.85
246 247 0.469917 ATACACTTCCAGCCATCCCG 59.530 55.000 0.00 0.00 0.00 5.14
247 248 0.616395 TACACTTCCAGCCATCCCGA 60.616 55.000 0.00 0.00 0.00 5.14
248 249 1.153289 CACTTCCAGCCATCCCGAG 60.153 63.158 0.00 0.00 0.00 4.63
249 250 2.203126 CTTCCAGCCATCCCGAGC 60.203 66.667 0.00 0.00 0.00 5.03
250 251 2.688666 TTCCAGCCATCCCGAGCT 60.689 61.111 0.00 0.00 40.89 4.09
251 252 2.657102 CTTCCAGCCATCCCGAGCTC 62.657 65.000 2.73 2.73 37.18 4.09
252 253 4.247380 CCAGCCATCCCGAGCTCC 62.247 72.222 8.47 0.00 37.18 4.70
253 254 3.473647 CAGCCATCCCGAGCTCCA 61.474 66.667 8.47 0.00 37.18 3.86
254 255 2.447379 AGCCATCCCGAGCTCCAT 60.447 61.111 8.47 0.00 32.71 3.41
255 256 2.031768 GCCATCCCGAGCTCCATC 59.968 66.667 8.47 0.00 0.00 3.51
256 257 2.515071 GCCATCCCGAGCTCCATCT 61.515 63.158 8.47 0.00 0.00 2.90
257 258 1.370437 CCATCCCGAGCTCCATCTG 59.630 63.158 8.47 1.15 0.00 2.90
258 259 1.370437 CATCCCGAGCTCCATCTGG 59.630 63.158 8.47 2.60 0.00 3.86
259 260 1.840650 ATCCCGAGCTCCATCTGGG 60.841 63.158 15.53 15.53 41.43 4.45
260 261 2.611964 ATCCCGAGCTCCATCTGGGT 62.612 60.000 19.54 7.81 40.86 4.51
261 262 2.503061 CCGAGCTCCATCTGGGTG 59.497 66.667 8.47 0.00 38.11 4.61
267 268 2.922162 CTCCATCTGGGTGCCTACT 58.078 57.895 0.00 0.00 38.11 2.57
268 269 0.467384 CTCCATCTGGGTGCCTACTG 59.533 60.000 0.00 0.00 38.11 2.74
269 270 0.982852 TCCATCTGGGTGCCTACTGG 60.983 60.000 0.00 0.00 38.11 4.00
270 271 0.982852 CCATCTGGGTGCCTACTGGA 60.983 60.000 0.00 0.00 34.57 3.86
271 272 0.467384 CATCTGGGTGCCTACTGGAG 59.533 60.000 0.00 0.00 34.57 3.86
282 283 1.731720 CTACTGGAGGAAGCAACAGC 58.268 55.000 0.00 0.00 34.40 4.40
283 284 1.002430 CTACTGGAGGAAGCAACAGCA 59.998 52.381 0.00 0.00 34.40 4.41
284 285 0.536006 ACTGGAGGAAGCAACAGCAC 60.536 55.000 0.00 0.00 34.40 4.40
285 286 1.228245 TGGAGGAAGCAACAGCACC 60.228 57.895 0.00 0.00 0.00 5.01
286 287 2.328099 GGAGGAAGCAACAGCACCG 61.328 63.158 0.00 0.00 34.05 4.94
287 288 1.598130 GAGGAAGCAACAGCACCGT 60.598 57.895 0.00 0.00 34.05 4.83
288 289 1.152963 AGGAAGCAACAGCACCGTT 60.153 52.632 0.00 0.00 34.05 4.44
289 290 1.166531 AGGAAGCAACAGCACCGTTC 61.167 55.000 0.00 0.00 34.05 3.95
290 291 1.444119 GGAAGCAACAGCACCGTTCA 61.444 55.000 0.00 0.00 0.00 3.18
291 292 0.593128 GAAGCAACAGCACCGTTCAT 59.407 50.000 0.00 0.00 0.00 2.57
292 293 0.593128 AAGCAACAGCACCGTTCATC 59.407 50.000 0.00 0.00 0.00 2.92
293 294 1.154413 GCAACAGCACCGTTCATCG 60.154 57.895 0.00 0.00 39.52 3.84
294 295 1.841663 GCAACAGCACCGTTCATCGT 61.842 55.000 0.00 0.00 37.94 3.73
295 296 0.163788 CAACAGCACCGTTCATCGTC 59.836 55.000 0.00 0.00 37.94 4.20
296 297 0.033504 AACAGCACCGTTCATCGTCT 59.966 50.000 0.00 0.00 37.94 4.18
297 298 0.388649 ACAGCACCGTTCATCGTCTC 60.389 55.000 0.00 0.00 37.94 3.36
298 299 0.388520 CAGCACCGTTCATCGTCTCA 60.389 55.000 0.00 0.00 37.94 3.27
299 300 0.532573 AGCACCGTTCATCGTCTCAT 59.467 50.000 0.00 0.00 37.94 2.90
300 301 1.066858 AGCACCGTTCATCGTCTCATT 60.067 47.619 0.00 0.00 37.94 2.57
301 302 2.165641 AGCACCGTTCATCGTCTCATTA 59.834 45.455 0.00 0.00 37.94 1.90
302 303 2.535984 GCACCGTTCATCGTCTCATTAG 59.464 50.000 0.00 0.00 37.94 1.73
303 304 3.733988 GCACCGTTCATCGTCTCATTAGA 60.734 47.826 0.00 0.00 37.94 2.10
324 325 1.649171 CGCAAGTCTGTAAGCACTACG 59.351 52.381 0.00 0.00 32.65 3.51
325 326 2.673833 GCAAGTCTGTAAGCACTACGT 58.326 47.619 0.00 0.00 32.65 3.57
326 327 3.668757 CGCAAGTCTGTAAGCACTACGTA 60.669 47.826 0.00 0.00 32.65 3.57
327 328 3.607209 GCAAGTCTGTAAGCACTACGTAC 59.393 47.826 0.00 0.00 34.22 3.67
328 329 4.615452 GCAAGTCTGTAAGCACTACGTACT 60.615 45.833 0.00 0.00 34.66 2.73
329 330 4.681835 AGTCTGTAAGCACTACGTACTG 57.318 45.455 0.00 0.00 34.66 2.74
330 331 4.321718 AGTCTGTAAGCACTACGTACTGA 58.678 43.478 6.43 0.00 38.31 3.41
331 332 4.758674 AGTCTGTAAGCACTACGTACTGAA 59.241 41.667 6.43 0.00 40.76 3.02
332 333 5.240183 AGTCTGTAAGCACTACGTACTGAAA 59.760 40.000 6.43 0.00 40.76 2.69
333 334 5.916883 GTCTGTAAGCACTACGTACTGAAAA 59.083 40.000 6.43 0.00 40.76 2.29
334 335 6.087820 GTCTGTAAGCACTACGTACTGAAAAG 59.912 42.308 6.43 0.00 40.76 2.27
335 336 6.016860 TCTGTAAGCACTACGTACTGAAAAGA 60.017 38.462 6.43 0.00 37.92 2.52
336 337 5.916883 TGTAAGCACTACGTACTGAAAAGAC 59.083 40.000 6.43 0.00 34.66 3.01
337 338 3.562505 AGCACTACGTACTGAAAAGACG 58.437 45.455 6.43 0.00 42.22 4.18
338 339 2.090195 GCACTACGTACTGAAAAGACGC 59.910 50.000 6.43 0.00 40.19 5.19
339 340 2.660236 CACTACGTACTGAAAAGACGCC 59.340 50.000 0.00 0.00 40.19 5.68
340 341 2.257034 CTACGTACTGAAAAGACGCCC 58.743 52.381 0.00 0.00 40.19 6.13
341 342 0.665369 ACGTACTGAAAAGACGCCCG 60.665 55.000 0.00 0.00 40.19 6.13
342 343 0.387622 CGTACTGAAAAGACGCCCGA 60.388 55.000 0.00 0.00 0.00 5.14
343 344 1.734707 CGTACTGAAAAGACGCCCGAT 60.735 52.381 0.00 0.00 0.00 4.18
344 345 1.925185 GTACTGAAAAGACGCCCGATC 59.075 52.381 0.00 0.00 0.00 3.69
345 346 0.608640 ACTGAAAAGACGCCCGATCT 59.391 50.000 0.00 0.00 0.00 2.75
346 347 1.002087 ACTGAAAAGACGCCCGATCTT 59.998 47.619 0.00 0.00 38.05 2.40
347 348 2.076863 CTGAAAAGACGCCCGATCTTT 58.923 47.619 10.33 10.33 46.07 2.52
348 349 2.073816 TGAAAAGACGCCCGATCTTTC 58.926 47.619 14.06 10.23 43.91 2.62
349 350 2.289444 TGAAAAGACGCCCGATCTTTCT 60.289 45.455 14.06 8.22 43.91 2.52
350 351 1.726853 AAAGACGCCCGATCTTTCTG 58.273 50.000 10.33 0.00 41.53 3.02
351 352 0.108138 AAGACGCCCGATCTTTCTGG 60.108 55.000 0.00 0.00 32.32 3.86
352 353 2.125106 ACGCCCGATCTTTCTGGC 60.125 61.111 0.00 0.00 45.85 4.85
354 355 3.577313 GCCCGATCTTTCTGGCGC 61.577 66.667 0.00 0.00 41.58 6.53
355 356 2.897350 CCCGATCTTTCTGGCGCC 60.897 66.667 22.73 22.73 0.00 6.53
356 357 2.187946 CCGATCTTTCTGGCGCCT 59.812 61.111 29.70 4.49 0.00 5.52
357 358 1.441729 CCGATCTTTCTGGCGCCTA 59.558 57.895 29.70 13.50 0.00 3.93
358 359 0.598680 CCGATCTTTCTGGCGCCTAG 60.599 60.000 29.70 22.27 0.00 3.02
359 360 0.598680 CGATCTTTCTGGCGCCTAGG 60.599 60.000 29.70 17.48 0.00 3.02
360 361 0.882484 GATCTTTCTGGCGCCTAGGC 60.882 60.000 29.70 24.75 46.95 3.93
374 375 1.997669 CTAGGCAAGGAAGTCGTCAC 58.002 55.000 0.00 0.00 0.00 3.67
375 376 0.606604 TAGGCAAGGAAGTCGTCACC 59.393 55.000 0.00 0.00 0.00 4.02
376 377 1.070786 GGCAAGGAAGTCGTCACCA 59.929 57.895 0.00 0.00 0.00 4.17
377 378 0.534203 GGCAAGGAAGTCGTCACCAA 60.534 55.000 0.00 0.00 0.00 3.67
378 379 0.586802 GCAAGGAAGTCGTCACCAAC 59.413 55.000 0.00 0.00 0.00 3.77
379 380 1.226746 CAAGGAAGTCGTCACCAACC 58.773 55.000 0.00 0.00 0.00 3.77
380 381 0.108019 AAGGAAGTCGTCACCAACCC 59.892 55.000 0.00 0.00 0.00 4.11
381 382 1.666872 GGAAGTCGTCACCAACCCG 60.667 63.158 0.00 0.00 0.00 5.28
382 383 1.666872 GAAGTCGTCACCAACCCGG 60.667 63.158 0.00 0.00 42.50 5.73
383 384 3.173167 AAGTCGTCACCAACCCGGG 62.173 63.158 22.25 22.25 40.22 5.73
384 385 3.618750 GTCGTCACCAACCCGGGA 61.619 66.667 32.02 0.00 40.22 5.14
385 386 2.843411 TCGTCACCAACCCGGGAA 60.843 61.111 32.02 1.49 40.22 3.97
386 387 2.358247 CGTCACCAACCCGGGAAG 60.358 66.667 32.02 18.99 40.22 3.46
387 388 2.874664 CGTCACCAACCCGGGAAGA 61.875 63.158 32.02 14.10 40.22 2.87
388 389 1.452801 GTCACCAACCCGGGAAGAA 59.547 57.895 32.02 3.98 40.22 2.52
389 390 0.605589 GTCACCAACCCGGGAAGAAG 60.606 60.000 32.02 14.16 40.22 2.85
390 391 1.303317 CACCAACCCGGGAAGAAGG 60.303 63.158 32.02 21.98 40.22 3.46
391 392 2.361230 CCAACCCGGGAAGAAGGC 60.361 66.667 32.02 0.00 0.00 4.35
392 393 2.361230 CAACCCGGGAAGAAGGCC 60.361 66.667 32.02 0.00 0.00 5.19
393 394 4.029809 AACCCGGGAAGAAGGCCG 62.030 66.667 32.02 0.00 0.00 6.13
397 398 2.590092 CGGGAAGAAGGCCGGATT 59.410 61.111 5.05 0.00 0.00 3.01
398 399 1.077716 CGGGAAGAAGGCCGGATTT 60.078 57.895 5.05 0.00 0.00 2.17
399 400 0.679960 CGGGAAGAAGGCCGGATTTT 60.680 55.000 5.05 0.00 0.00 1.82
400 401 1.103803 GGGAAGAAGGCCGGATTTTC 58.896 55.000 5.05 5.17 0.00 2.29
401 402 1.615919 GGGAAGAAGGCCGGATTTTCA 60.616 52.381 5.05 0.00 0.00 2.69
402 403 2.167662 GGAAGAAGGCCGGATTTTCAA 58.832 47.619 5.05 0.00 0.00 2.69
403 404 2.164422 GGAAGAAGGCCGGATTTTCAAG 59.836 50.000 5.05 0.00 0.00 3.02
404 405 2.879103 AGAAGGCCGGATTTTCAAGA 57.121 45.000 5.05 0.00 0.00 3.02
405 406 3.372440 AGAAGGCCGGATTTTCAAGAT 57.628 42.857 5.05 0.00 0.00 2.40
406 407 3.701664 AGAAGGCCGGATTTTCAAGATT 58.298 40.909 5.05 0.00 0.00 2.40
407 408 4.089361 AGAAGGCCGGATTTTCAAGATTT 58.911 39.130 5.05 0.00 0.00 2.17
408 409 4.158579 AGAAGGCCGGATTTTCAAGATTTC 59.841 41.667 5.05 0.00 0.00 2.17
409 410 3.430453 AGGCCGGATTTTCAAGATTTCA 58.570 40.909 5.05 0.00 0.00 2.69
410 411 3.193479 AGGCCGGATTTTCAAGATTTCAC 59.807 43.478 5.05 0.00 0.00 3.18
411 412 3.056891 GGCCGGATTTTCAAGATTTCACA 60.057 43.478 5.05 0.00 0.00 3.58
412 413 4.381932 GGCCGGATTTTCAAGATTTCACAT 60.382 41.667 5.05 0.00 0.00 3.21
413 414 5.163561 GGCCGGATTTTCAAGATTTCACATA 60.164 40.000 5.05 0.00 0.00 2.29
414 415 6.461509 GGCCGGATTTTCAAGATTTCACATAT 60.462 38.462 5.05 0.00 0.00 1.78
415 416 6.418819 GCCGGATTTTCAAGATTTCACATATG 59.581 38.462 5.05 0.00 0.00 1.78
416 417 7.483307 CCGGATTTTCAAGATTTCACATATGT 58.517 34.615 1.41 1.41 0.00 2.29
417 418 7.645340 CCGGATTTTCAAGATTTCACATATGTC 59.355 37.037 5.07 0.00 0.00 3.06
418 419 7.645340 CGGATTTTCAAGATTTCACATATGTCC 59.355 37.037 5.07 0.00 0.00 4.02
419 420 8.469200 GGATTTTCAAGATTTCACATATGTCCA 58.531 33.333 5.07 0.00 0.00 4.02
420 421 9.294030 GATTTTCAAGATTTCACATATGTCCAC 57.706 33.333 5.07 0.00 0.00 4.02
421 422 7.757941 TTTCAAGATTTCACATATGTCCACA 57.242 32.000 5.07 0.00 0.00 4.17
475 980 3.682292 GATGCCGGGGGTGAGTCAC 62.682 68.421 15.24 15.24 0.00 3.67
478 983 2.603473 CCGGGGGTGAGTCACAGA 60.603 66.667 24.20 0.00 35.86 3.41
479 984 2.650116 CCGGGGGTGAGTCACAGAG 61.650 68.421 24.20 11.92 35.86 3.35
480 985 1.908793 CGGGGGTGAGTCACAGAGT 60.909 63.158 24.20 0.00 35.86 3.24
481 986 1.878656 CGGGGGTGAGTCACAGAGTC 61.879 65.000 24.20 6.76 35.86 3.36
482 987 0.832135 GGGGGTGAGTCACAGAGTCA 60.832 60.000 24.20 0.59 39.36 3.41
483 988 0.605589 GGGGTGAGTCACAGAGTCAG 59.394 60.000 24.20 0.00 41.83 3.51
484 989 1.621992 GGGTGAGTCACAGAGTCAGA 58.378 55.000 24.20 0.00 41.83 3.27
485 990 1.543802 GGGTGAGTCACAGAGTCAGAG 59.456 57.143 24.20 0.00 41.83 3.35
534 1083 1.683365 GGCATGCATTGGTCCCTGT 60.683 57.895 21.36 0.00 0.00 4.00
536 1085 1.514087 CATGCATTGGTCCCTGTGC 59.486 57.895 0.00 6.57 38.05 4.57
629 2321 2.203070 CGAAAGGAGATGCCCGGG 60.203 66.667 19.09 19.09 37.37 5.73
736 2504 0.673437 ACGCACAAACCCATCCAAAG 59.327 50.000 0.00 0.00 0.00 2.77
739 2507 1.963515 GCACAAACCCATCCAAAGACT 59.036 47.619 0.00 0.00 0.00 3.24
740 2508 2.029918 GCACAAACCCATCCAAAGACTC 60.030 50.000 0.00 0.00 0.00 3.36
741 2509 3.221771 CACAAACCCATCCAAAGACTCA 58.778 45.455 0.00 0.00 0.00 3.41
742 2510 3.254166 CACAAACCCATCCAAAGACTCAG 59.746 47.826 0.00 0.00 0.00 3.35
743 2511 3.138283 ACAAACCCATCCAAAGACTCAGA 59.862 43.478 0.00 0.00 0.00 3.27
744 2512 4.144297 CAAACCCATCCAAAGACTCAGAA 58.856 43.478 0.00 0.00 0.00 3.02
745 2513 4.453480 AACCCATCCAAAGACTCAGAAA 57.547 40.909 0.00 0.00 0.00 2.52
747 2515 4.401925 ACCCATCCAAAGACTCAGAAAAG 58.598 43.478 0.00 0.00 0.00 2.27
750 2518 5.412904 CCCATCCAAAGACTCAGAAAAGTAC 59.587 44.000 0.00 0.00 0.00 2.73
883 2656 0.320697 GTCCAGACTTACCGTGCCTT 59.679 55.000 0.00 0.00 0.00 4.35
887 2660 0.320697 AGACTTACCGTGCCTTCCAC 59.679 55.000 0.00 0.00 41.15 4.02
902 2675 1.066752 CCACGACTGTCGAACCACA 59.933 57.895 33.99 0.00 43.74 4.17
907 2680 0.600255 GACTGTCGAACCACACCAGG 60.600 60.000 0.00 0.00 0.00 4.45
908 2681 1.301716 CTGTCGAACCACACCAGGG 60.302 63.158 0.00 0.00 0.00 4.45
909 2682 1.754380 CTGTCGAACCACACCAGGGA 61.754 60.000 0.00 0.00 0.00 4.20
911 2684 0.036306 GTCGAACCACACCAGGGAAT 59.964 55.000 0.00 0.00 0.00 3.01
913 2686 2.093128 GTCGAACCACACCAGGGAATAT 60.093 50.000 0.00 0.00 0.00 1.28
914 2687 3.133362 GTCGAACCACACCAGGGAATATA 59.867 47.826 0.00 0.00 0.00 0.86
915 2688 3.971305 TCGAACCACACCAGGGAATATAT 59.029 43.478 0.00 0.00 0.00 0.86
922 3874 5.479306 CACACCAGGGAATATATAACCGAG 58.521 45.833 0.00 0.00 0.00 4.63
923 3875 4.020485 ACACCAGGGAATATATAACCGAGC 60.020 45.833 0.00 0.00 0.00 5.03
958 3933 2.516909 GACCCGACAAAACCCCCA 59.483 61.111 0.00 0.00 0.00 4.96
959 3934 1.900016 GACCCGACAAAACCCCCAC 60.900 63.158 0.00 0.00 0.00 4.61
1143 4118 2.025155 GAGGACGTCATCAAGAGGCTA 58.975 52.381 24.24 0.00 35.56 3.93
1219 4239 1.375326 GCCTTCCCCGAGTTGTTCT 59.625 57.895 0.00 0.00 0.00 3.01
1400 4421 0.116143 AGGTGAGTTCCCTCTCTGCT 59.884 55.000 0.00 0.00 38.61 4.24
1419 4449 2.107141 CCTTTAGGAGGCGCTCGG 59.893 66.667 7.64 0.00 39.09 4.63
1437 4467 2.580966 GGTTCGAGCCGATAGTTTCT 57.419 50.000 1.31 0.00 35.23 2.52
1461 4491 1.369321 GGGGATGATCTCTGACGCC 59.631 63.158 0.00 0.00 0.00 5.68
1521 4554 1.103398 ATATTGCACGGAAGGCTGCC 61.103 55.000 11.65 11.65 31.97 4.85
1551 4584 8.329203 AGAACAAGTGGATTAGATTTGAGAAC 57.671 34.615 0.00 0.00 0.00 3.01
1630 4680 2.601314 CGTCGGAGAGATATAGAGCTCG 59.399 54.545 8.37 0.00 43.19 5.03
1861 4944 6.494893 TTCGTTTTATTCAGGTTGAGGATG 57.505 37.500 0.00 0.00 0.00 3.51
2000 5247 6.310650 TTGTGTGGCATGGCACAATTATTTC 61.311 40.000 44.87 32.80 46.58 2.17
2001 5248 8.637211 TTGTGTGGCATGGCACAATTATTTCA 62.637 38.462 44.87 34.56 46.58 2.69
2047 5434 3.009473 TCCTGATCCAAGAAAGGAGTTGG 59.991 47.826 0.00 0.00 44.08 3.77
2324 5714 7.546667 TCAAGCTAATTTCCAAAATTGATCAGC 59.453 33.333 7.69 8.16 0.00 4.26
2442 5832 5.279206 CCAGCTGTACTTATCCTATCTGTGG 60.279 48.000 13.81 0.00 0.00 4.17
2803 6202 6.840780 ACATTTTTCTTGAGATGGGGTAAG 57.159 37.500 0.00 0.00 0.00 2.34
2806 6205 7.393515 ACATTTTTCTTGAGATGGGGTAAGTAC 59.606 37.037 0.00 0.00 0.00 2.73
2939 6339 8.911918 TGTAGAGAGCAGGTAAAATACAAAAA 57.088 30.769 0.00 0.00 0.00 1.94
3295 6706 6.584185 TTTCCTCAAAGGTAAAGGTTATGC 57.416 37.500 0.00 0.00 36.53 3.14
3301 6712 7.065923 CCTCAAAGGTAAAGGTTATGCTACTTC 59.934 40.741 0.00 0.00 0.00 3.01
3404 6815 7.986320 CCTGATGACTATCTTGAGAAAGTGAAT 59.014 37.037 0.00 0.00 34.31 2.57
3470 6881 2.618709 GGTGTCTTTGCTGCAGTTTAGT 59.381 45.455 16.64 0.00 0.00 2.24
3476 6887 3.988379 TTGCTGCAGTTTAGTCAAAGG 57.012 42.857 16.64 0.00 0.00 3.11
3621 7032 6.349300 CACAGGAGGTATAGCAATTAAGTGT 58.651 40.000 4.65 0.00 0.00 3.55
3885 7307 7.898014 AGGTAACCATTCTCTTGTTTCTTTT 57.102 32.000 0.00 0.00 37.17 2.27
4086 7509 6.531594 GCTAAACCAAAGCCATCAACTTTATC 59.468 38.462 0.00 0.00 35.62 1.75
4278 8114 7.387673 GTGATCCCATGAATCATCGTTATGTTA 59.612 37.037 12.17 0.00 34.50 2.41
4503 8342 8.033038 GGTCTTTTTCACTTGAAAGGTAAAACT 58.967 33.333 4.66 0.00 43.90 2.66
4505 8344 8.798402 TCTTTTTCACTTGAAAGGTAAAACTGA 58.202 29.630 4.66 1.11 43.90 3.41
4592 8431 9.678260 ATGAAGTATAGAAAATCATCATAGGGC 57.322 33.333 0.00 0.00 0.00 5.19
4691 8533 9.624373 GAATGATCCCTTTATGTGCATCTATAT 57.376 33.333 0.00 0.00 0.00 0.86
4768 8614 9.206870 CAATCCTTGTTTTGCAACTAATGTATT 57.793 29.630 0.00 0.00 33.58 1.89
4930 9063 7.221450 AGGTACTGTGCTTATTAACTTTGTCA 58.779 34.615 0.00 0.00 37.18 3.58
4943 9076 4.465632 ACTTTGTCATATACCACGAGCA 57.534 40.909 0.00 0.00 0.00 4.26
5000 9140 2.106338 TCAAAGTGATCAAGGACTGGCA 59.894 45.455 0.00 0.00 0.00 4.92
5112 9280 1.335872 CGAATGGTGGTTCTTTGTGGC 60.336 52.381 0.00 0.00 0.00 5.01
5119 9287 3.305335 GGTGGTTCTTTGTGGCTGTTATG 60.305 47.826 0.00 0.00 0.00 1.90
5307 9529 1.064952 CGCACGGTTGGAAAAGAAAGT 59.935 47.619 0.00 0.00 0.00 2.66
5323 9545 4.013050 AGAAAGTAATCAAGGGCTTCAGC 58.987 43.478 0.00 0.00 41.14 4.26
5492 9715 3.588336 GCTCAAGCTGAAGCCCAG 58.412 61.111 9.00 0.00 45.67 4.45
5493 9716 1.002868 GCTCAAGCTGAAGCCCAGA 60.003 57.895 9.00 0.00 45.78 3.86
5494 9717 0.607489 GCTCAAGCTGAAGCCCAGAA 60.607 55.000 9.00 0.00 45.78 3.02
5496 9719 2.233271 CTCAAGCTGAAGCCCAGAAAA 58.767 47.619 7.80 0.00 45.78 2.29
5497 9720 1.956477 TCAAGCTGAAGCCCAGAAAAC 59.044 47.619 7.80 0.00 45.78 2.43
5498 9721 1.000171 CAAGCTGAAGCCCAGAAAACC 60.000 52.381 7.80 0.00 45.78 3.27
5499 9722 0.185901 AGCTGAAGCCCAGAAAACCA 59.814 50.000 7.80 0.00 45.78 3.67
5500 9723 0.600057 GCTGAAGCCCAGAAAACCAG 59.400 55.000 7.80 0.00 45.78 4.00
5502 9725 0.178964 TGAAGCCCAGAAAACCAGGG 60.179 55.000 0.00 0.00 44.00 4.45
5503 9726 0.112412 GAAGCCCAGAAAACCAGGGA 59.888 55.000 0.00 0.00 43.90 4.20
5504 9727 0.786435 AAGCCCAGAAAACCAGGGAT 59.214 50.000 0.00 0.00 43.90 3.85
5505 9728 0.786435 AGCCCAGAAAACCAGGGATT 59.214 50.000 0.00 0.00 43.90 3.01
5521 9744 6.051717 CCAGGGATTACATCAGAGTAGTTTG 58.948 44.000 0.00 0.00 0.00 2.93
5615 10396 2.048877 GTCGAACTTTCCGCCGGA 60.049 61.111 5.05 0.00 0.00 5.14
5620 10401 2.760387 GAACTTTCCGCCGGACTCGT 62.760 60.000 4.70 0.00 33.95 4.18
5662 10443 0.680601 ACGAAAACAAACCACCCCGT 60.681 50.000 0.00 0.00 0.00 5.28
5664 10445 0.818938 GAAAACAAACCACCCCGTGT 59.181 50.000 0.00 0.00 0.00 4.49
5706 10487 1.004918 CCGCACGACTTTTCCTCCT 60.005 57.895 0.00 0.00 0.00 3.69
5719 10500 6.535540 ACTTTTCCTCCTTTTCTTCTACCTC 58.464 40.000 0.00 0.00 0.00 3.85
5720 10501 5.500546 TTTCCTCCTTTTCTTCTACCTCC 57.499 43.478 0.00 0.00 0.00 4.30
5732 10513 2.032860 CTACCTCCAGCCCATCACGG 62.033 65.000 0.00 0.00 0.00 4.94
5777 10558 2.371784 TGGTCGCATCCTCCAGAAA 58.628 52.632 0.00 0.00 0.00 2.52
5791 10572 0.734253 CAGAAACTCTCTCACCGGCG 60.734 60.000 0.00 0.00 29.07 6.46
5810 10591 3.461982 CGAGTGCTCGTGTGCGAC 61.462 66.667 12.87 0.00 46.99 5.19
5843 10624 1.617947 GCCTCTCCTTCATGGTCGGT 61.618 60.000 0.00 0.00 37.07 4.69
5863 10644 0.252057 GAGCCCCTCTCCTATCCTCC 60.252 65.000 0.00 0.00 35.77 4.30
5864 10645 0.708007 AGCCCCTCTCCTATCCTCCT 60.708 60.000 0.00 0.00 0.00 3.69
5865 10646 0.252057 GCCCCTCTCCTATCCTCCTC 60.252 65.000 0.00 0.00 0.00 3.71
5882 10663 0.034896 CTCCCCAATTCGTATCCCCG 59.965 60.000 0.00 0.00 0.00 5.73
5904 10685 3.458163 CCCGCTAGCTTCCCACGA 61.458 66.667 13.93 0.00 0.00 4.35
5930 10711 0.721718 CCGTCTGCAACTTTCGGATC 59.278 55.000 8.34 0.00 43.22 3.36
6041 10822 3.931247 AACCACGGGCACACGCTA 61.931 61.111 0.00 0.00 38.60 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 0.536915 GCCTGCTGAATGGGATCTCC 60.537 60.000 0.00 0.00 0.00 3.71
13 14 0.182061 TGCCTGCTGAATGGGATCTC 59.818 55.000 0.00 0.00 0.00 2.75
14 15 0.851469 ATGCCTGCTGAATGGGATCT 59.149 50.000 0.00 0.00 27.84 2.75
15 16 1.340248 CAATGCCTGCTGAATGGGATC 59.660 52.381 0.00 0.00 33.20 3.36
16 17 1.410004 CAATGCCTGCTGAATGGGAT 58.590 50.000 0.00 0.00 35.90 3.85
17 18 2.890612 CAATGCCTGCTGAATGGGA 58.109 52.632 0.00 0.00 0.00 4.37
27 28 2.680577 GTCTTTGGAAAGCAATGCCTG 58.319 47.619 0.00 0.00 35.99 4.85
28 29 1.270550 CGTCTTTGGAAAGCAATGCCT 59.729 47.619 0.00 0.00 35.99 4.75
29 30 1.000274 ACGTCTTTGGAAAGCAATGCC 60.000 47.619 0.00 0.00 35.99 4.40
30 31 2.422276 ACGTCTTTGGAAAGCAATGC 57.578 45.000 0.00 0.00 35.99 3.56
31 32 4.550639 GCAAAACGTCTTTGGAAAGCAATG 60.551 41.667 18.37 0.00 35.99 2.82
32 33 3.555547 GCAAAACGTCTTTGGAAAGCAAT 59.444 39.130 18.37 0.00 35.99 3.56
33 34 2.926838 GCAAAACGTCTTTGGAAAGCAA 59.073 40.909 18.37 0.00 35.99 3.91
34 35 2.094494 TGCAAAACGTCTTTGGAAAGCA 60.094 40.909 18.37 10.78 35.99 3.91
35 36 2.535331 TGCAAAACGTCTTTGGAAAGC 58.465 42.857 18.37 9.04 35.99 3.51
36 37 6.820470 TTAATGCAAAACGTCTTTGGAAAG 57.180 33.333 16.51 0.00 33.62 2.62
37 38 7.171447 CATTAATGCAAAACGTCTTTGGAAA 57.829 32.000 16.51 10.59 33.62 3.13
38 39 6.761731 CATTAATGCAAAACGTCTTTGGAA 57.238 33.333 16.51 6.04 33.62 3.53
61 62 3.119352 CCTTCCATACCTTTTGCTCTTGC 60.119 47.826 0.00 0.00 40.20 4.01
62 63 4.335416 TCCTTCCATACCTTTTGCTCTTG 58.665 43.478 0.00 0.00 0.00 3.02
63 64 4.657814 TCCTTCCATACCTTTTGCTCTT 57.342 40.909 0.00 0.00 0.00 2.85
64 65 4.657814 TTCCTTCCATACCTTTTGCTCT 57.342 40.909 0.00 0.00 0.00 4.09
65 66 5.196695 AGATTCCTTCCATACCTTTTGCTC 58.803 41.667 0.00 0.00 0.00 4.26
66 67 5.198602 AGATTCCTTCCATACCTTTTGCT 57.801 39.130 0.00 0.00 0.00 3.91
67 68 5.895928 GAAGATTCCTTCCATACCTTTTGC 58.104 41.667 0.00 0.00 42.24 3.68
83 84 5.078411 TGTAGCTGTGAAGAGGAAGATTC 57.922 43.478 0.00 0.00 0.00 2.52
84 85 5.489792 TTGTAGCTGTGAAGAGGAAGATT 57.510 39.130 0.00 0.00 0.00 2.40
85 86 5.489792 TTTGTAGCTGTGAAGAGGAAGAT 57.510 39.130 0.00 0.00 0.00 2.40
86 87 4.955811 TTTGTAGCTGTGAAGAGGAAGA 57.044 40.909 0.00 0.00 0.00 2.87
87 88 4.328440 CGATTTGTAGCTGTGAAGAGGAAG 59.672 45.833 0.00 0.00 0.00 3.46
88 89 4.245660 CGATTTGTAGCTGTGAAGAGGAA 58.754 43.478 0.00 0.00 0.00 3.36
89 90 3.368427 CCGATTTGTAGCTGTGAAGAGGA 60.368 47.826 0.00 0.00 0.00 3.71
90 91 2.932614 CCGATTTGTAGCTGTGAAGAGG 59.067 50.000 0.00 0.00 0.00 3.69
91 92 3.614616 GTCCGATTTGTAGCTGTGAAGAG 59.385 47.826 0.00 0.00 0.00 2.85
92 93 3.006430 TGTCCGATTTGTAGCTGTGAAGA 59.994 43.478 0.00 0.00 0.00 2.87
93 94 3.123621 GTGTCCGATTTGTAGCTGTGAAG 59.876 47.826 0.00 0.00 0.00 3.02
94 95 3.064207 GTGTCCGATTTGTAGCTGTGAA 58.936 45.455 0.00 0.00 0.00 3.18
95 96 2.036604 TGTGTCCGATTTGTAGCTGTGA 59.963 45.455 0.00 0.00 0.00 3.58
96 97 2.412870 TGTGTCCGATTTGTAGCTGTG 58.587 47.619 0.00 0.00 0.00 3.66
97 98 2.831685 TGTGTCCGATTTGTAGCTGT 57.168 45.000 0.00 0.00 0.00 4.40
98 99 3.246226 GCTATGTGTCCGATTTGTAGCTG 59.754 47.826 0.00 0.00 32.52 4.24
99 100 3.118775 TGCTATGTGTCCGATTTGTAGCT 60.119 43.478 0.00 0.00 35.38 3.32
100 101 3.001330 GTGCTATGTGTCCGATTTGTAGC 59.999 47.826 0.00 0.00 35.02 3.58
101 102 4.433615 AGTGCTATGTGTCCGATTTGTAG 58.566 43.478 0.00 0.00 0.00 2.74
102 103 4.465632 AGTGCTATGTGTCCGATTTGTA 57.534 40.909 0.00 0.00 0.00 2.41
103 104 3.334583 AGTGCTATGTGTCCGATTTGT 57.665 42.857 0.00 0.00 0.00 2.83
104 105 3.436704 ACAAGTGCTATGTGTCCGATTTG 59.563 43.478 0.00 0.00 0.00 2.32
105 106 3.674997 ACAAGTGCTATGTGTCCGATTT 58.325 40.909 0.00 0.00 0.00 2.17
106 107 3.334583 ACAAGTGCTATGTGTCCGATT 57.665 42.857 0.00 0.00 0.00 3.34
107 108 3.334583 AACAAGTGCTATGTGTCCGAT 57.665 42.857 0.00 0.00 0.00 4.18
108 109 2.831685 AACAAGTGCTATGTGTCCGA 57.168 45.000 0.00 0.00 0.00 4.55
109 110 2.159627 GGAAACAAGTGCTATGTGTCCG 59.840 50.000 9.56 0.00 43.42 4.79
110 111 3.831715 GGAAACAAGTGCTATGTGTCC 57.168 47.619 9.56 9.56 45.41 4.02
111 112 4.065088 TCTGGAAACAAGTGCTATGTGTC 58.935 43.478 0.34 0.34 42.06 3.67
112 113 4.085357 TCTGGAAACAAGTGCTATGTGT 57.915 40.909 0.00 0.00 42.06 3.72
113 114 5.633830 AATCTGGAAACAAGTGCTATGTG 57.366 39.130 0.00 0.00 42.06 3.21
114 115 6.006449 AGAAATCTGGAAACAAGTGCTATGT 58.994 36.000 0.00 0.00 42.06 2.29
115 116 6.506500 AGAAATCTGGAAACAAGTGCTATG 57.493 37.500 0.00 0.00 42.06 2.23
116 117 7.530426 AAAGAAATCTGGAAACAAGTGCTAT 57.470 32.000 0.00 0.00 42.06 2.97
117 118 6.959639 AAAGAAATCTGGAAACAAGTGCTA 57.040 33.333 0.00 0.00 42.06 3.49
118 119 5.859205 AAAGAAATCTGGAAACAAGTGCT 57.141 34.783 0.00 0.00 42.06 4.40
119 120 6.199719 CAGAAAAGAAATCTGGAAACAAGTGC 59.800 38.462 0.00 0.00 42.06 4.40
120 121 7.260603 ACAGAAAAGAAATCTGGAAACAAGTG 58.739 34.615 8.26 0.00 46.81 3.16
121 122 7.410120 ACAGAAAAGAAATCTGGAAACAAGT 57.590 32.000 8.26 0.00 46.81 3.16
122 123 8.598075 CAAACAGAAAAGAAATCTGGAAACAAG 58.402 33.333 8.26 0.00 46.81 3.16
123 124 8.093927 ACAAACAGAAAAGAAATCTGGAAACAA 58.906 29.630 8.26 0.00 46.81 2.83
124 125 7.610865 ACAAACAGAAAAGAAATCTGGAAACA 58.389 30.769 8.26 0.00 46.81 2.83
125 126 8.479313 AACAAACAGAAAAGAAATCTGGAAAC 57.521 30.769 8.26 0.00 46.81 2.78
126 127 8.531146 AGAACAAACAGAAAAGAAATCTGGAAA 58.469 29.630 8.26 0.00 46.81 3.13
127 128 8.066612 AGAACAAACAGAAAAGAAATCTGGAA 57.933 30.769 8.26 0.00 46.81 3.53
128 129 7.645058 AGAACAAACAGAAAAGAAATCTGGA 57.355 32.000 8.26 0.00 46.81 3.86
129 130 7.436376 GGAAGAACAAACAGAAAAGAAATCTGG 59.564 37.037 8.26 0.00 46.81 3.86
131 132 8.066612 TGGAAGAACAAACAGAAAAGAAATCT 57.933 30.769 0.00 0.00 0.00 2.40
132 133 8.702163 TTGGAAGAACAAACAGAAAAGAAATC 57.298 30.769 0.00 0.00 0.00 2.17
133 134 8.314021 ACTTGGAAGAACAAACAGAAAAGAAAT 58.686 29.630 0.00 0.00 0.00 2.17
134 135 7.666623 ACTTGGAAGAACAAACAGAAAAGAAA 58.333 30.769 0.00 0.00 0.00 2.52
135 136 7.227049 ACTTGGAAGAACAAACAGAAAAGAA 57.773 32.000 0.00 0.00 0.00 2.52
136 137 6.834168 ACTTGGAAGAACAAACAGAAAAGA 57.166 33.333 0.00 0.00 0.00 2.52
137 138 6.693113 GCTACTTGGAAGAACAAACAGAAAAG 59.307 38.462 0.00 0.00 0.00 2.27
138 139 6.151985 TGCTACTTGGAAGAACAAACAGAAAA 59.848 34.615 0.00 0.00 0.00 2.29
139 140 5.650266 TGCTACTTGGAAGAACAAACAGAAA 59.350 36.000 0.00 0.00 0.00 2.52
140 141 5.189928 TGCTACTTGGAAGAACAAACAGAA 58.810 37.500 0.00 0.00 0.00 3.02
141 142 4.776349 TGCTACTTGGAAGAACAAACAGA 58.224 39.130 0.00 0.00 0.00 3.41
142 143 5.499139 TTGCTACTTGGAAGAACAAACAG 57.501 39.130 0.00 0.00 0.00 3.16
143 144 5.499139 CTTGCTACTTGGAAGAACAAACA 57.501 39.130 0.00 0.00 45.41 2.83
151 152 4.021544 ACAGACTCTCTTGCTACTTGGAAG 60.022 45.833 0.00 0.00 44.17 3.46
152 153 3.898123 ACAGACTCTCTTGCTACTTGGAA 59.102 43.478 0.00 0.00 0.00 3.53
153 154 3.501349 ACAGACTCTCTTGCTACTTGGA 58.499 45.455 0.00 0.00 0.00 3.53
154 155 3.951775 ACAGACTCTCTTGCTACTTGG 57.048 47.619 0.00 0.00 0.00 3.61
155 156 4.157656 AGCTACAGACTCTCTTGCTACTTG 59.842 45.833 0.00 0.00 0.00 3.16
156 157 4.340617 AGCTACAGACTCTCTTGCTACTT 58.659 43.478 0.00 0.00 0.00 2.24
157 158 3.963129 AGCTACAGACTCTCTTGCTACT 58.037 45.455 0.00 0.00 0.00 2.57
158 159 5.821516 TTAGCTACAGACTCTCTTGCTAC 57.178 43.478 0.00 0.00 31.60 3.58
159 160 6.361433 AGATTAGCTACAGACTCTCTTGCTA 58.639 40.000 0.00 0.00 31.01 3.49
160 161 5.200483 AGATTAGCTACAGACTCTCTTGCT 58.800 41.667 0.00 0.00 32.46 3.91
161 162 5.514274 AGATTAGCTACAGACTCTCTTGC 57.486 43.478 0.00 0.00 0.00 4.01
162 163 7.094508 TGAAGATTAGCTACAGACTCTCTTG 57.905 40.000 0.00 0.00 0.00 3.02
163 164 7.684187 GCATGAAGATTAGCTACAGACTCTCTT 60.684 40.741 0.00 0.00 0.00 2.85
164 165 6.239008 GCATGAAGATTAGCTACAGACTCTCT 60.239 42.308 0.00 0.00 0.00 3.10
165 166 5.920273 GCATGAAGATTAGCTACAGACTCTC 59.080 44.000 0.00 0.00 0.00 3.20
166 167 5.362143 TGCATGAAGATTAGCTACAGACTCT 59.638 40.000 0.00 0.00 0.00 3.24
167 168 5.595885 TGCATGAAGATTAGCTACAGACTC 58.404 41.667 0.00 0.00 0.00 3.36
168 169 5.604758 TGCATGAAGATTAGCTACAGACT 57.395 39.130 0.00 0.00 0.00 3.24
169 170 6.668541 TTTGCATGAAGATTAGCTACAGAC 57.331 37.500 0.00 0.00 0.00 3.51
170 171 7.870509 ATTTTGCATGAAGATTAGCTACAGA 57.129 32.000 0.00 0.00 0.00 3.41
171 172 8.186163 TGAATTTTGCATGAAGATTAGCTACAG 58.814 33.333 0.00 0.00 0.00 2.74
172 173 8.054152 TGAATTTTGCATGAAGATTAGCTACA 57.946 30.769 0.00 0.00 0.00 2.74
173 174 8.186821 ACTGAATTTTGCATGAAGATTAGCTAC 58.813 33.333 0.00 0.00 0.00 3.58
174 175 8.284945 ACTGAATTTTGCATGAAGATTAGCTA 57.715 30.769 0.00 0.00 0.00 3.32
175 176 7.166691 ACTGAATTTTGCATGAAGATTAGCT 57.833 32.000 0.00 0.00 0.00 3.32
176 177 8.186821 AGTACTGAATTTTGCATGAAGATTAGC 58.813 33.333 0.00 0.00 0.00 3.09
181 182 8.514594 CCTAAAGTACTGAATTTTGCATGAAGA 58.485 33.333 0.00 0.00 0.00 2.87
182 183 7.274250 GCCTAAAGTACTGAATTTTGCATGAAG 59.726 37.037 0.00 0.00 0.00 3.02
183 184 7.090173 GCCTAAAGTACTGAATTTTGCATGAA 58.910 34.615 0.00 0.00 0.00 2.57
184 185 6.620678 GCCTAAAGTACTGAATTTTGCATGA 58.379 36.000 0.00 0.00 0.00 3.07
185 186 5.512788 CGCCTAAAGTACTGAATTTTGCATG 59.487 40.000 0.00 0.00 0.00 4.06
186 187 5.393027 CCGCCTAAAGTACTGAATTTTGCAT 60.393 40.000 0.00 0.00 0.00 3.96
187 188 4.083003 CCGCCTAAAGTACTGAATTTTGCA 60.083 41.667 0.00 0.00 0.00 4.08
188 189 4.155280 TCCGCCTAAAGTACTGAATTTTGC 59.845 41.667 0.00 0.00 0.00 3.68
189 190 5.673818 GCTCCGCCTAAAGTACTGAATTTTG 60.674 44.000 0.00 0.00 0.00 2.44
190 191 4.395231 GCTCCGCCTAAAGTACTGAATTTT 59.605 41.667 0.00 0.00 0.00 1.82
191 192 3.939592 GCTCCGCCTAAAGTACTGAATTT 59.060 43.478 0.00 0.00 0.00 1.82
192 193 3.532542 GCTCCGCCTAAAGTACTGAATT 58.467 45.455 0.00 0.00 0.00 2.17
193 194 2.158943 GGCTCCGCCTAAAGTACTGAAT 60.159 50.000 0.00 0.00 46.69 2.57
194 195 1.206371 GGCTCCGCCTAAAGTACTGAA 59.794 52.381 0.00 0.00 46.69 3.02
195 196 0.822164 GGCTCCGCCTAAAGTACTGA 59.178 55.000 0.00 0.00 46.69 3.41
196 197 3.364277 GGCTCCGCCTAAAGTACTG 57.636 57.895 0.00 0.00 46.69 2.74
209 210 3.775654 CTGGTCCACTCCGGCTCC 61.776 72.222 0.00 0.00 33.14 4.70
210 211 0.755698 TATCTGGTCCACTCCGGCTC 60.756 60.000 0.00 0.00 34.12 4.70
211 212 1.043673 GTATCTGGTCCACTCCGGCT 61.044 60.000 0.00 0.00 34.12 5.52
212 213 1.327690 TGTATCTGGTCCACTCCGGC 61.328 60.000 0.00 0.00 34.12 6.13
213 214 0.460311 GTGTATCTGGTCCACTCCGG 59.540 60.000 0.00 0.00 35.33 5.14
214 215 1.475403 AGTGTATCTGGTCCACTCCG 58.525 55.000 0.00 0.00 34.44 4.63
215 216 2.168728 GGAAGTGTATCTGGTCCACTCC 59.831 54.545 0.00 0.00 38.44 3.85
216 217 2.832129 TGGAAGTGTATCTGGTCCACTC 59.168 50.000 0.00 0.00 38.44 3.51
217 218 2.834549 CTGGAAGTGTATCTGGTCCACT 59.165 50.000 0.00 0.00 41.01 4.00
218 219 2.678190 GCTGGAAGTGTATCTGGTCCAC 60.678 54.545 0.00 0.00 34.67 4.02
219 220 1.555075 GCTGGAAGTGTATCTGGTCCA 59.445 52.381 0.00 0.00 36.90 4.02
220 221 1.134371 GGCTGGAAGTGTATCTGGTCC 60.134 57.143 0.00 0.00 35.30 4.46
221 222 1.555075 TGGCTGGAAGTGTATCTGGTC 59.445 52.381 0.00 0.00 35.30 4.02
222 223 1.656587 TGGCTGGAAGTGTATCTGGT 58.343 50.000 0.00 0.00 35.30 4.00
223 224 2.486191 GGATGGCTGGAAGTGTATCTGG 60.486 54.545 0.00 0.00 35.30 3.86
224 225 2.486191 GGGATGGCTGGAAGTGTATCTG 60.486 54.545 0.00 0.00 35.30 2.90
225 226 1.771255 GGGATGGCTGGAAGTGTATCT 59.229 52.381 0.00 0.00 35.30 1.98
226 227 1.541233 CGGGATGGCTGGAAGTGTATC 60.541 57.143 0.00 0.00 35.30 2.24
227 228 0.469917 CGGGATGGCTGGAAGTGTAT 59.530 55.000 0.00 0.00 35.30 2.29
228 229 0.616395 TCGGGATGGCTGGAAGTGTA 60.616 55.000 0.00 0.00 35.30 2.90
229 230 1.903877 CTCGGGATGGCTGGAAGTGT 61.904 60.000 0.00 0.00 35.30 3.55
230 231 1.153289 CTCGGGATGGCTGGAAGTG 60.153 63.158 0.00 0.00 35.30 3.16
231 232 3.036429 GCTCGGGATGGCTGGAAGT 62.036 63.158 0.00 0.00 35.30 3.01
232 233 2.203126 GCTCGGGATGGCTGGAAG 60.203 66.667 0.00 0.00 0.00 3.46
233 234 2.688666 AGCTCGGGATGGCTGGAA 60.689 61.111 0.00 0.00 37.41 3.53
234 235 3.157252 GAGCTCGGGATGGCTGGA 61.157 66.667 0.00 0.00 39.05 3.86
235 236 4.247380 GGAGCTCGGGATGGCTGG 62.247 72.222 7.83 0.00 39.05 4.85
236 237 2.728443 GATGGAGCTCGGGATGGCTG 62.728 65.000 7.83 0.00 39.05 4.85
237 238 2.447379 ATGGAGCTCGGGATGGCT 60.447 61.111 7.83 0.00 41.88 4.75
238 239 2.031768 GATGGAGCTCGGGATGGC 59.968 66.667 7.83 0.00 0.00 4.40
239 240 1.370437 CAGATGGAGCTCGGGATGG 59.630 63.158 7.83 0.00 0.00 3.51
240 241 1.370437 CCAGATGGAGCTCGGGATG 59.630 63.158 7.83 4.23 37.39 3.51
241 242 1.840650 CCCAGATGGAGCTCGGGAT 60.841 63.158 16.43 4.66 39.44 3.85
242 243 2.444706 CCCAGATGGAGCTCGGGA 60.445 66.667 16.43 0.00 39.44 5.14
243 244 2.765807 ACCCAGATGGAGCTCGGG 60.766 66.667 18.99 18.99 43.02 5.14
244 245 2.503061 CACCCAGATGGAGCTCGG 59.497 66.667 7.83 4.50 37.39 4.63
245 246 2.202987 GCACCCAGATGGAGCTCG 60.203 66.667 7.83 0.00 46.21 5.03
249 250 0.467384 CAGTAGGCACCCAGATGGAG 59.533 60.000 0.00 0.00 37.39 3.86
250 251 0.982852 CCAGTAGGCACCCAGATGGA 60.983 60.000 0.00 0.00 37.39 3.41
251 252 0.982852 TCCAGTAGGCACCCAGATGG 60.983 60.000 0.00 0.00 35.70 3.51
252 253 0.467384 CTCCAGTAGGCACCCAGATG 59.533 60.000 0.00 0.00 33.74 2.90
253 254 0.692419 CCTCCAGTAGGCACCCAGAT 60.692 60.000 0.00 0.00 38.97 2.90
254 255 1.306141 CCTCCAGTAGGCACCCAGA 60.306 63.158 0.00 0.00 38.97 3.86
255 256 0.909610 TTCCTCCAGTAGGCACCCAG 60.910 60.000 0.00 0.00 46.10 4.45
256 257 0.909610 CTTCCTCCAGTAGGCACCCA 60.910 60.000 0.00 0.00 46.10 4.51
257 258 1.908483 CTTCCTCCAGTAGGCACCC 59.092 63.158 0.00 0.00 46.10 4.61
258 259 1.222113 GCTTCCTCCAGTAGGCACC 59.778 63.158 0.00 0.00 46.10 5.01
259 260 0.324943 TTGCTTCCTCCAGTAGGCAC 59.675 55.000 0.00 0.00 46.10 5.01
260 261 0.324943 GTTGCTTCCTCCAGTAGGCA 59.675 55.000 0.00 0.00 46.10 4.75
261 262 0.324943 TGTTGCTTCCTCCAGTAGGC 59.675 55.000 0.00 0.00 46.10 3.93
262 263 1.677217 GCTGTTGCTTCCTCCAGTAGG 60.677 57.143 0.00 0.00 40.62 3.18
263 264 1.002430 TGCTGTTGCTTCCTCCAGTAG 59.998 52.381 0.00 0.00 40.48 2.57
264 265 1.055849 TGCTGTTGCTTCCTCCAGTA 58.944 50.000 0.00 0.00 40.48 2.74
265 266 0.536006 GTGCTGTTGCTTCCTCCAGT 60.536 55.000 0.00 0.00 40.48 4.00
266 267 1.239968 GGTGCTGTTGCTTCCTCCAG 61.240 60.000 0.00 0.00 40.48 3.86
267 268 1.228245 GGTGCTGTTGCTTCCTCCA 60.228 57.895 0.00 0.00 40.48 3.86
268 269 2.328099 CGGTGCTGTTGCTTCCTCC 61.328 63.158 0.00 0.00 40.48 4.30
269 270 1.166531 AACGGTGCTGTTGCTTCCTC 61.167 55.000 0.00 0.00 40.48 3.71
270 271 1.152963 AACGGTGCTGTTGCTTCCT 60.153 52.632 0.00 0.00 40.48 3.36
271 272 1.282875 GAACGGTGCTGTTGCTTCC 59.717 57.895 0.60 0.00 40.48 3.46
272 273 0.593128 ATGAACGGTGCTGTTGCTTC 59.407 50.000 0.60 0.00 40.48 3.86
273 274 0.593128 GATGAACGGTGCTGTTGCTT 59.407 50.000 0.60 0.00 40.48 3.91
274 275 1.568612 CGATGAACGGTGCTGTTGCT 61.569 55.000 0.60 0.00 38.00 3.91
275 276 1.154413 CGATGAACGGTGCTGTTGC 60.154 57.895 0.60 0.00 38.46 4.17
280 281 7.886202 GTCTAATGAGACGATGAACGGTGCT 62.886 48.000 0.00 0.00 42.73 4.40
281 282 5.772346 GTCTAATGAGACGATGAACGGTGC 61.772 50.000 0.00 0.00 42.73 5.01
282 283 3.791887 GTCTAATGAGACGATGAACGGTG 59.208 47.826 0.00 0.00 42.73 4.94
283 284 4.030134 GTCTAATGAGACGATGAACGGT 57.970 45.455 0.00 0.00 42.73 4.83
302 303 1.784525 AGTGCTTACAGACTTGCGTC 58.215 50.000 0.00 0.00 40.54 5.19
303 304 2.673833 GTAGTGCTTACAGACTTGCGT 58.326 47.619 0.00 0.00 32.27 5.24
304 305 1.649171 CGTAGTGCTTACAGACTTGCG 59.351 52.381 0.00 0.00 32.27 4.85
305 306 2.673833 ACGTAGTGCTTACAGACTTGC 58.326 47.619 0.00 0.00 42.51 4.01
317 318 2.090195 GCGTCTTTTCAGTACGTAGTGC 59.910 50.000 22.98 7.34 45.73 4.40
318 319 2.660236 GGCGTCTTTTCAGTACGTAGTG 59.340 50.000 22.01 22.01 45.73 2.74
320 321 2.257034 GGGCGTCTTTTCAGTACGTAG 58.743 52.381 0.00 0.00 38.81 3.51
321 322 1.401409 CGGGCGTCTTTTCAGTACGTA 60.401 52.381 0.00 0.00 38.81 3.57
322 323 0.665369 CGGGCGTCTTTTCAGTACGT 60.665 55.000 0.00 0.00 38.81 3.57
323 324 0.387622 TCGGGCGTCTTTTCAGTACG 60.388 55.000 0.00 0.00 39.55 3.67
324 325 1.925185 GATCGGGCGTCTTTTCAGTAC 59.075 52.381 0.00 0.00 0.00 2.73
325 326 1.822990 AGATCGGGCGTCTTTTCAGTA 59.177 47.619 0.00 0.00 0.00 2.74
326 327 0.608640 AGATCGGGCGTCTTTTCAGT 59.391 50.000 0.00 0.00 0.00 3.41
327 328 1.726853 AAGATCGGGCGTCTTTTCAG 58.273 50.000 0.00 0.00 32.17 3.02
328 329 2.073816 GAAAGATCGGGCGTCTTTTCA 58.926 47.619 10.94 0.00 43.80 2.69
329 330 2.094417 CAGAAAGATCGGGCGTCTTTTC 59.906 50.000 10.94 3.38 43.80 2.29
330 331 2.076863 CAGAAAGATCGGGCGTCTTTT 58.923 47.619 10.94 2.23 43.80 2.27
331 332 1.676014 CCAGAAAGATCGGGCGTCTTT 60.676 52.381 9.84 9.84 45.77 2.52
332 333 0.108138 CCAGAAAGATCGGGCGTCTT 60.108 55.000 0.00 0.00 37.52 3.01
333 334 1.517832 CCAGAAAGATCGGGCGTCT 59.482 57.895 0.00 0.00 34.05 4.18
334 335 4.110493 CCAGAAAGATCGGGCGTC 57.890 61.111 0.00 0.00 34.05 5.19
338 339 2.028125 TAGGCGCCAGAAAGATCGGG 62.028 60.000 31.54 0.00 43.12 5.14
339 340 0.598680 CTAGGCGCCAGAAAGATCGG 60.599 60.000 31.54 0.00 0.00 4.18
340 341 0.598680 CCTAGGCGCCAGAAAGATCG 60.599 60.000 31.54 1.11 0.00 3.69
341 342 0.882484 GCCTAGGCGCCAGAAAGATC 60.882 60.000 31.54 11.04 0.00 2.75
342 343 1.147153 GCCTAGGCGCCAGAAAGAT 59.853 57.895 31.54 8.51 0.00 2.40
343 344 1.836999 TTGCCTAGGCGCCAGAAAGA 61.837 55.000 31.54 7.38 45.51 2.52
344 345 1.372087 CTTGCCTAGGCGCCAGAAAG 61.372 60.000 31.54 21.97 45.51 2.62
345 346 1.377202 CTTGCCTAGGCGCCAGAAA 60.377 57.895 31.54 16.56 45.51 2.52
346 347 2.268920 CTTGCCTAGGCGCCAGAA 59.731 61.111 31.54 15.53 45.51 3.02
347 348 3.785859 CCTTGCCTAGGCGCCAGA 61.786 66.667 31.54 15.62 45.51 3.86
348 349 3.329542 TTCCTTGCCTAGGCGCCAG 62.330 63.158 31.54 22.57 44.37 4.85
349 350 3.326578 TTCCTTGCCTAGGCGCCA 61.327 61.111 31.54 14.00 44.37 5.69
350 351 2.514824 CTTCCTTGCCTAGGCGCC 60.515 66.667 28.28 21.89 44.37 6.53
351 352 1.815840 GACTTCCTTGCCTAGGCGC 60.816 63.158 28.28 6.65 44.37 6.53
352 353 1.519455 CGACTTCCTTGCCTAGGCG 60.519 63.158 28.28 15.14 44.37 5.52
353 354 0.460459 GACGACTTCCTTGCCTAGGC 60.460 60.000 27.71 27.71 44.37 3.93
354 355 0.895530 TGACGACTTCCTTGCCTAGG 59.104 55.000 3.67 3.67 46.27 3.02
355 356 1.404315 GGTGACGACTTCCTTGCCTAG 60.404 57.143 0.00 0.00 0.00 3.02
356 357 0.606604 GGTGACGACTTCCTTGCCTA 59.393 55.000 0.00 0.00 0.00 3.93
357 358 1.371558 GGTGACGACTTCCTTGCCT 59.628 57.895 0.00 0.00 0.00 4.75
358 359 0.534203 TTGGTGACGACTTCCTTGCC 60.534 55.000 0.00 0.00 0.00 4.52
359 360 0.586802 GTTGGTGACGACTTCCTTGC 59.413 55.000 0.00 0.00 41.86 4.01
360 361 1.226746 GGTTGGTGACGACTTCCTTG 58.773 55.000 0.00 0.00 44.71 3.61
361 362 0.108019 GGGTTGGTGACGACTTCCTT 59.892 55.000 0.00 0.00 44.71 3.36
362 363 1.752833 GGGTTGGTGACGACTTCCT 59.247 57.895 0.00 0.00 44.71 3.36
363 364 1.666872 CGGGTTGGTGACGACTTCC 60.667 63.158 0.00 0.00 44.71 3.46
364 365 1.666872 CCGGGTTGGTGACGACTTC 60.667 63.158 0.00 0.00 44.71 3.01
365 366 2.424302 CCGGGTTGGTGACGACTT 59.576 61.111 0.00 0.00 44.71 3.01
366 367 3.622826 CCCGGGTTGGTGACGACT 61.623 66.667 14.18 0.00 44.71 4.18
367 368 3.167822 TTCCCGGGTTGGTGACGAC 62.168 63.158 22.86 0.00 44.59 4.34
368 369 2.843411 TTCCCGGGTTGGTGACGA 60.843 61.111 22.86 0.00 35.15 4.20
369 370 2.358247 CTTCCCGGGTTGGTGACG 60.358 66.667 22.86 0.00 35.15 4.35
370 371 0.605589 CTTCTTCCCGGGTTGGTGAC 60.606 60.000 22.86 0.00 35.15 3.67
371 372 1.758592 CTTCTTCCCGGGTTGGTGA 59.241 57.895 22.86 9.80 35.15 4.02
372 373 1.303317 CCTTCTTCCCGGGTTGGTG 60.303 63.158 22.86 9.40 35.15 4.17
373 374 3.167414 CCTTCTTCCCGGGTTGGT 58.833 61.111 22.86 0.00 35.15 3.67
374 375 2.361230 GCCTTCTTCCCGGGTTGG 60.361 66.667 22.86 16.68 37.55 3.77
375 376 2.361230 GGCCTTCTTCCCGGGTTG 60.361 66.667 22.86 14.72 0.00 3.77
376 377 4.029809 CGGCCTTCTTCCCGGGTT 62.030 66.667 22.86 0.00 40.79 4.11
380 381 0.679960 AAAATCCGGCCTTCTTCCCG 60.680 55.000 0.00 0.00 43.97 5.14
381 382 1.103803 GAAAATCCGGCCTTCTTCCC 58.896 55.000 0.00 0.00 0.00 3.97
382 383 1.834188 TGAAAATCCGGCCTTCTTCC 58.166 50.000 0.00 0.00 0.00 3.46
383 384 3.081804 TCTTGAAAATCCGGCCTTCTTC 58.918 45.455 0.00 0.00 0.00 2.87
384 385 3.154827 TCTTGAAAATCCGGCCTTCTT 57.845 42.857 0.00 0.00 0.00 2.52
385 386 2.879103 TCTTGAAAATCCGGCCTTCT 57.121 45.000 0.00 0.00 0.00 2.85
386 387 4.082245 TGAAATCTTGAAAATCCGGCCTTC 60.082 41.667 0.00 0.00 0.00 3.46
387 388 3.831911 TGAAATCTTGAAAATCCGGCCTT 59.168 39.130 0.00 0.00 0.00 4.35
388 389 3.193479 GTGAAATCTTGAAAATCCGGCCT 59.807 43.478 0.00 0.00 0.00 5.19
389 390 3.056891 TGTGAAATCTTGAAAATCCGGCC 60.057 43.478 0.00 0.00 0.00 6.13
390 391 4.173036 TGTGAAATCTTGAAAATCCGGC 57.827 40.909 0.00 0.00 0.00 6.13
391 392 7.483307 ACATATGTGAAATCTTGAAAATCCGG 58.517 34.615 7.78 0.00 0.00 5.14
392 393 7.645340 GGACATATGTGAAATCTTGAAAATCCG 59.355 37.037 14.43 0.00 0.00 4.18
393 394 8.469200 TGGACATATGTGAAATCTTGAAAATCC 58.531 33.333 14.43 2.69 0.00 3.01
394 395 9.294030 GTGGACATATGTGAAATCTTGAAAATC 57.706 33.333 14.43 0.00 0.00 2.17
395 396 8.805175 TGTGGACATATGTGAAATCTTGAAAAT 58.195 29.630 14.43 0.00 0.00 1.82
396 397 8.175925 TGTGGACATATGTGAAATCTTGAAAA 57.824 30.769 14.43 0.00 0.00 2.29
397 398 7.665145 TCTGTGGACATATGTGAAATCTTGAAA 59.335 33.333 14.43 0.00 0.00 2.69
398 399 7.167535 TCTGTGGACATATGTGAAATCTTGAA 58.832 34.615 14.43 0.00 0.00 2.69
399 400 6.710278 TCTGTGGACATATGTGAAATCTTGA 58.290 36.000 14.43 0.00 0.00 3.02
400 401 6.457934 GCTCTGTGGACATATGTGAAATCTTG 60.458 42.308 14.43 0.00 0.00 3.02
401 402 5.587844 GCTCTGTGGACATATGTGAAATCTT 59.412 40.000 14.43 0.00 0.00 2.40
402 403 5.121811 GCTCTGTGGACATATGTGAAATCT 58.878 41.667 14.43 0.00 0.00 2.40
403 404 4.025396 CGCTCTGTGGACATATGTGAAATC 60.025 45.833 14.43 0.00 0.00 2.17
404 405 3.873361 CGCTCTGTGGACATATGTGAAAT 59.127 43.478 14.43 0.00 0.00 2.17
405 406 3.261580 CGCTCTGTGGACATATGTGAAA 58.738 45.455 14.43 0.00 0.00 2.69
406 407 2.418609 CCGCTCTGTGGACATATGTGAA 60.419 50.000 14.43 0.00 34.74 3.18
407 408 1.136891 CCGCTCTGTGGACATATGTGA 59.863 52.381 14.43 2.78 34.74 3.58
408 409 1.575244 CCGCTCTGTGGACATATGTG 58.425 55.000 14.43 0.00 34.74 3.21
409 410 0.179073 GCCGCTCTGTGGACATATGT 60.179 55.000 8.43 8.43 34.74 2.29
410 411 0.179076 TGCCGCTCTGTGGACATATG 60.179 55.000 0.00 0.00 34.74 1.78
411 412 0.179073 GTGCCGCTCTGTGGACATAT 60.179 55.000 0.87 0.00 34.74 1.78
412 413 1.218047 GTGCCGCTCTGTGGACATA 59.782 57.895 0.87 0.00 34.74 2.29
413 414 2.046892 GTGCCGCTCTGTGGACAT 60.047 61.111 0.87 0.00 34.74 3.06
414 415 3.233980 AGTGCCGCTCTGTGGACA 61.234 61.111 0.87 0.00 34.74 4.02
415 416 2.740055 CAGTGCCGCTCTGTGGAC 60.740 66.667 13.24 0.00 34.74 4.02
416 417 3.226429 GACAGTGCCGCTCTGTGGA 62.226 63.158 27.97 0.00 44.68 4.02
417 418 2.740055 GACAGTGCCGCTCTGTGG 60.740 66.667 27.97 4.97 44.68 4.17
418 419 3.108289 CGACAGTGCCGCTCTGTG 61.108 66.667 27.97 17.50 44.68 3.66
419 420 4.363990 CCGACAGTGCCGCTCTGT 62.364 66.667 24.32 24.32 46.86 3.41
480 985 3.062466 CGTCCGGGTCAGCTCTGA 61.062 66.667 0.00 0.00 37.24 3.27
481 986 3.062466 TCGTCCGGGTCAGCTCTG 61.062 66.667 0.00 0.00 0.00 3.35
482 987 3.063084 GTCGTCCGGGTCAGCTCT 61.063 66.667 0.00 0.00 0.00 4.09
483 988 4.477975 CGTCGTCCGGGTCAGCTC 62.478 72.222 0.00 0.00 0.00 4.09
536 1085 3.781770 GACTCGCCTCCAGCATCGG 62.782 68.421 0.00 0.00 44.04 4.18
549 1098 0.734253 CTTTCTGGTCAGCCGACTCG 60.734 60.000 0.00 0.00 42.21 4.18
708 2476 3.971150 TGGGTTTGTGCGTATTTTCTTG 58.029 40.909 0.00 0.00 0.00 3.02
736 2504 1.001633 TGCCCCGTACTTTTCTGAGTC 59.998 52.381 0.00 0.00 0.00 3.36
739 2507 1.053424 AGTGCCCCGTACTTTTCTGA 58.947 50.000 0.00 0.00 0.00 3.27
740 2508 1.535462 CAAGTGCCCCGTACTTTTCTG 59.465 52.381 0.00 0.00 36.42 3.02
741 2509 1.544759 CCAAGTGCCCCGTACTTTTCT 60.545 52.381 0.00 0.00 36.42 2.52
742 2510 0.879090 CCAAGTGCCCCGTACTTTTC 59.121 55.000 0.00 0.00 36.42 2.29
743 2511 0.184211 ACCAAGTGCCCCGTACTTTT 59.816 50.000 0.00 0.00 36.42 2.27
744 2512 1.058284 TACCAAGTGCCCCGTACTTT 58.942 50.000 0.00 0.00 36.42 2.66
745 2513 1.282382 ATACCAAGTGCCCCGTACTT 58.718 50.000 0.00 0.00 38.91 2.24
747 2515 2.118313 AAATACCAAGTGCCCCGTAC 57.882 50.000 0.00 0.00 0.00 3.67
846 2619 2.484062 CGGGGCTTGCCTAATGCTG 61.484 63.158 11.71 0.00 42.00 4.41
883 2656 1.361271 GTGGTTCGACAGTCGTGGA 59.639 57.895 22.16 7.50 41.35 4.02
887 2660 0.939577 CTGGTGTGGTTCGACAGTCG 60.940 60.000 17.33 17.33 42.10 4.18
888 2661 0.600255 CCTGGTGTGGTTCGACAGTC 60.600 60.000 0.00 0.00 0.00 3.51
889 2662 1.445942 CCTGGTGTGGTTCGACAGT 59.554 57.895 0.00 0.00 0.00 3.55
890 2663 1.301716 CCCTGGTGTGGTTCGACAG 60.302 63.158 0.00 0.00 0.00 3.51
891 2664 1.338890 TTCCCTGGTGTGGTTCGACA 61.339 55.000 0.00 0.00 0.00 4.35
902 2675 3.518303 GGCTCGGTTATATATTCCCTGGT 59.482 47.826 0.00 0.00 0.00 4.00
907 2680 3.864003 GCTTCGGCTCGGTTATATATTCC 59.136 47.826 0.00 0.00 38.08 3.01
908 2681 3.546670 CGCTTCGGCTCGGTTATATATTC 59.453 47.826 0.00 0.00 39.13 1.75
909 2682 3.508762 CGCTTCGGCTCGGTTATATATT 58.491 45.455 0.00 0.00 39.13 1.28
911 2684 1.200716 CCGCTTCGGCTCGGTTATATA 59.799 52.381 0.00 0.00 41.17 0.86
913 2686 1.361271 CCGCTTCGGCTCGGTTATA 59.639 57.895 0.00 0.00 41.17 0.98
914 2687 2.106332 CCGCTTCGGCTCGGTTAT 59.894 61.111 0.00 0.00 41.17 1.89
915 2688 4.137872 CCCGCTTCGGCTCGGTTA 62.138 66.667 0.00 0.00 46.86 2.85
940 3892 2.670592 GGGGGTTTTGTCGGGTCG 60.671 66.667 0.00 0.00 0.00 4.79
943 3895 2.981350 CGTGGGGGTTTTGTCGGG 60.981 66.667 0.00 0.00 0.00 5.14
945 3897 1.650363 GAACGTGGGGGTTTTGTCG 59.350 57.895 0.00 0.00 0.00 4.35
949 3901 2.908428 GGCGAACGTGGGGGTTTT 60.908 61.111 0.00 0.00 0.00 2.43
958 3933 1.226888 GAATAGAGGCGGCGAACGT 60.227 57.895 12.98 0.00 46.52 3.99
967 3942 1.450642 GGGTTCCGGGAATAGAGGC 59.549 63.158 13.48 0.00 0.00 4.70
1143 4118 1.815421 GATGATGTGGAAGGCGCGT 60.815 57.895 8.43 0.00 0.00 6.01
1219 4239 2.750637 GCTCGTCAGGTCTCGGGA 60.751 66.667 0.00 0.00 0.00 5.14
1387 4407 0.988063 AAAGGGAGCAGAGAGGGAAC 59.012 55.000 0.00 0.00 0.00 3.62
1400 4421 2.423898 CGAGCGCCTCCTAAAGGGA 61.424 63.158 2.29 0.00 46.32 4.20
1419 4449 1.588861 GCAGAAACTATCGGCTCGAAC 59.411 52.381 1.44 0.00 44.68 3.95
1437 4467 1.117749 CAGAGATCATCCCCGGAGCA 61.118 60.000 0.73 0.00 0.00 4.26
1461 4491 3.676216 TGCAATGCAGCACTCTGG 58.324 55.556 2.72 0.00 40.11 3.86
1521 4554 3.334691 TCTAATCCACTTGTTCTTGGCG 58.665 45.455 0.00 0.00 32.37 5.69
1551 4584 1.797933 CGTTCTCAGCACGAGGTCG 60.798 63.158 0.00 0.00 42.55 4.79
1630 4680 6.811253 TCCAATACAAATACACACTGAACC 57.189 37.500 0.00 0.00 0.00 3.62
1683 4755 4.530710 TCTACATCTACAACCCACACAC 57.469 45.455 0.00 0.00 0.00 3.82
1861 4944 0.322816 TCTTGCAACTCATCCCTGGC 60.323 55.000 0.00 0.00 0.00 4.85
2000 5247 6.173339 ACAACCTACATGAAAGACCTACATG 58.827 40.000 0.00 0.00 44.42 3.21
2001 5248 6.374417 ACAACCTACATGAAAGACCTACAT 57.626 37.500 0.00 0.00 0.00 2.29
2003 5250 5.642491 GGAACAACCTACATGAAAGACCTAC 59.358 44.000 0.00 0.00 35.41 3.18
2036 5420 4.454161 GCTTTCTTCTCTCCAACTCCTTTC 59.546 45.833 0.00 0.00 0.00 2.62
2047 5434 7.920738 TCTTTTGTTACAAGCTTTCTTCTCTC 58.079 34.615 0.00 0.00 0.00 3.20
2112 5499 6.984474 TGATACTGTACTTGGCTAGCATTTAC 59.016 38.462 18.24 11.79 0.00 2.01
2324 5714 2.684881 ACAGTCAACAAGCAGAGGTTTG 59.315 45.455 0.00 0.00 40.62 2.93
2873 6273 4.065088 TCACTGAACCTGTTACATCAAGC 58.935 43.478 0.00 0.00 0.00 4.01
3171 6582 8.952278 GGAAAGACAACCATACATAATGTGTTA 58.048 33.333 0.00 0.00 42.29 2.41
3172 6583 7.669722 AGGAAAGACAACCATACATAATGTGTT 59.330 33.333 0.00 0.00 42.29 3.32
3174 6585 7.630242 AGGAAAGACAACCATACATAATGTG 57.370 36.000 0.00 0.00 33.34 3.21
3404 6815 2.644299 ACCACCAGATTGATGGACTTGA 59.356 45.455 0.00 0.00 43.57 3.02
3470 6881 6.540551 GCAACCTCAAATTAAAAACCCTTTGA 59.459 34.615 0.00 0.00 36.48 2.69
3476 6887 6.200854 CAGACAGCAACCTCAAATTAAAAACC 59.799 38.462 0.00 0.00 0.00 3.27
3664 7077 8.472413 TCGCCTACACTAATTTAGTCAAACTAT 58.528 33.333 6.10 0.00 36.76 2.12
3885 7307 5.825532 TCAATCAATTGAACACCCCATAGA 58.174 37.500 13.09 0.00 43.26 1.98
4476 8315 7.712204 TTTACCTTTCAAGTGAAAAAGACCT 57.288 32.000 7.80 0.00 42.72 3.85
4503 8342 2.102420 ACGACTGATGGAAACTGTGTCA 59.898 45.455 0.00 0.00 0.00 3.58
4505 8344 2.483876 CACGACTGATGGAAACTGTGT 58.516 47.619 0.00 0.00 0.00 3.72
4587 8426 0.837272 GTTGTGATGCCCTAGCCCTA 59.163 55.000 0.00 0.00 38.69 3.53
4588 8427 0.916358 AGTTGTGATGCCCTAGCCCT 60.916 55.000 0.00 0.00 38.69 5.19
4589 8428 0.464554 GAGTTGTGATGCCCTAGCCC 60.465 60.000 0.00 0.00 38.69 5.19
4590 8429 0.253044 TGAGTTGTGATGCCCTAGCC 59.747 55.000 0.00 0.00 38.69 3.93
4591 8430 2.012673 CTTGAGTTGTGATGCCCTAGC 58.987 52.381 0.00 0.00 40.48 3.42
4592 8431 3.616956 TCTTGAGTTGTGATGCCCTAG 57.383 47.619 0.00 0.00 0.00 3.02
4768 8614 8.509690 CAAAGATTTCTCTTGCACTTCTATTCA 58.490 33.333 0.00 0.00 40.93 2.57
4930 9063 2.908688 TGCACATGCTCGTGGTATAT 57.091 45.000 5.31 0.00 42.66 0.86
5012 9152 0.387202 CTCACTACAGCTGATCCCCG 59.613 60.000 23.35 3.50 0.00 5.73
5112 9280 4.074970 ACTGGTCTTCAAAGGCATAACAG 58.925 43.478 0.00 0.00 30.55 3.16
5119 9287 3.251004 CACAAGTACTGGTCTTCAAAGGC 59.749 47.826 0.00 0.00 0.00 4.35
5260 9477 1.416243 TTCCGTAGAGGGTTGTGTGT 58.584 50.000 0.00 0.00 41.52 3.72
5360 9583 3.274288 GGAAATAGACAGGACAGGCTTG 58.726 50.000 0.00 0.00 0.00 4.01
5489 9712 4.599041 TGATGTAATCCCTGGTTTTCTGG 58.401 43.478 0.00 0.00 44.73 3.86
5490 9713 5.500234 TCTGATGTAATCCCTGGTTTTCTG 58.500 41.667 0.00 0.00 44.73 3.02
5491 9714 5.251700 ACTCTGATGTAATCCCTGGTTTTCT 59.748 40.000 0.00 0.00 44.73 2.52
5492 9715 5.501156 ACTCTGATGTAATCCCTGGTTTTC 58.499 41.667 0.00 0.00 44.73 2.29
5493 9716 5.520748 ACTCTGATGTAATCCCTGGTTTT 57.479 39.130 0.00 0.00 44.73 2.43
5494 9717 5.726793 ACTACTCTGATGTAATCCCTGGTTT 59.273 40.000 0.00 0.00 44.73 3.27
5496 9719 4.884961 ACTACTCTGATGTAATCCCTGGT 58.115 43.478 0.00 0.00 44.73 4.00
5497 9720 5.878406 AACTACTCTGATGTAATCCCTGG 57.122 43.478 0.00 0.00 44.73 4.45
5498 9721 5.525378 GCAAACTACTCTGATGTAATCCCTG 59.475 44.000 0.00 0.00 44.73 4.45
5499 9722 5.189736 TGCAAACTACTCTGATGTAATCCCT 59.810 40.000 0.00 0.00 44.73 4.20
5500 9723 5.428253 TGCAAACTACTCTGATGTAATCCC 58.572 41.667 0.00 0.00 44.73 3.85
5565 9788 3.750639 TCGAAACGTTTCCCATTATGC 57.249 42.857 29.95 7.81 33.68 3.14
5636 10417 0.247775 GGTTTGTTTTCGTGTCGCGT 60.248 50.000 5.77 0.00 42.13 6.01
5640 10421 1.202325 GGGGTGGTTTGTTTTCGTGTC 60.202 52.381 0.00 0.00 0.00 3.67
5641 10422 0.818938 GGGGTGGTTTGTTTTCGTGT 59.181 50.000 0.00 0.00 0.00 4.49
5643 10424 0.680601 ACGGGGTGGTTTGTTTTCGT 60.681 50.000 0.00 0.00 0.00 3.85
5646 10427 0.533032 CACACGGGGTGGTTTGTTTT 59.467 50.000 1.43 0.00 44.04 2.43
5664 10445 3.008157 ACCCACCGTATACATGTGTTTCA 59.992 43.478 9.11 0.00 0.00 2.69
5667 10448 2.093341 GGACCCACCGTATACATGTGTT 60.093 50.000 9.11 0.00 0.00 3.32
5681 10462 3.819877 AAAGTCGTGCGGGACCCAC 62.820 63.158 12.15 0.13 37.66 4.61
5697 10478 5.371472 TGGAGGTAGAAGAAAAGGAGGAAAA 59.629 40.000 0.00 0.00 0.00 2.29
5706 10487 2.344592 TGGGCTGGAGGTAGAAGAAAA 58.655 47.619 0.00 0.00 0.00 2.29
5762 10543 1.478510 GAGAGTTTCTGGAGGATGCGA 59.521 52.381 0.00 0.00 0.00 5.10
5764 10545 2.499289 TGAGAGAGTTTCTGGAGGATGC 59.501 50.000 0.00 0.00 35.87 3.91
5808 10589 4.364409 GCGTTGTTGGGCGTCGTC 62.364 66.667 0.00 0.00 0.00 4.20
5811 10592 3.723348 GAGGCGTTGTTGGGCGTC 61.723 66.667 0.00 0.00 36.97 5.19
5812 10593 4.250305 AGAGGCGTTGTTGGGCGT 62.250 61.111 0.00 0.00 34.74 5.68
5813 10594 3.423154 GAGAGGCGTTGTTGGGCG 61.423 66.667 0.00 0.00 34.74 6.13
5814 10595 3.056328 GGAGAGGCGTTGTTGGGC 61.056 66.667 0.00 0.00 0.00 5.36
5815 10596 0.955919 GAAGGAGAGGCGTTGTTGGG 60.956 60.000 0.00 0.00 0.00 4.12
5816 10597 0.250295 TGAAGGAGAGGCGTTGTTGG 60.250 55.000 0.00 0.00 0.00 3.77
5817 10598 1.466167 CATGAAGGAGAGGCGTTGTTG 59.534 52.381 0.00 0.00 0.00 3.33
5818 10599 1.611673 CCATGAAGGAGAGGCGTTGTT 60.612 52.381 0.00 0.00 41.22 2.83
5819 10600 0.036010 CCATGAAGGAGAGGCGTTGT 60.036 55.000 0.00 0.00 41.22 3.32
5820 10601 0.036010 ACCATGAAGGAGAGGCGTTG 60.036 55.000 0.00 0.00 41.22 4.10
5821 10602 0.250513 GACCATGAAGGAGAGGCGTT 59.749 55.000 0.00 0.00 41.22 4.84
5822 10603 1.901085 GACCATGAAGGAGAGGCGT 59.099 57.895 0.00 0.00 41.22 5.68
5843 10624 0.485099 GAGGATAGGAGAGGGGCTCA 59.515 60.000 0.00 0.00 45.81 4.26
5863 10644 0.034896 CGGGGATACGAATTGGGGAG 59.965 60.000 0.00 0.00 35.47 4.30
5864 10645 1.412453 CCGGGGATACGAATTGGGGA 61.412 60.000 0.00 0.00 35.47 4.81
5865 10646 1.072505 CCGGGGATACGAATTGGGG 59.927 63.158 0.00 0.00 35.47 4.96
5904 10685 2.672996 GTTGCAGACGGCCATGGT 60.673 61.111 14.67 0.00 43.89 3.55
5974 10755 3.321497 CTGATAGTTCCCATAGCTTCGC 58.679 50.000 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.