Multiple sequence alignment - TraesCS6A01G321300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G321300 chr6A 100.000 3058 0 0 1 3058 555736488 555739545 0.000000e+00 5648.0
1 TraesCS6A01G321300 chr6A 91.111 45 4 0 2424 2468 610930573 610930529 9.160000e-06 62.1
2 TraesCS6A01G321300 chr6B 89.702 2350 122 55 37 2305 617183818 617186128 0.000000e+00 2889.0
3 TraesCS6A01G321300 chr6B 88.258 264 15 12 2486 2737 617186154 617186413 4.960000e-78 302.0
4 TraesCS6A01G321300 chr6B 100.000 40 0 0 1 40 617183765 617183804 1.180000e-09 75.0
5 TraesCS6A01G321300 chr6D 88.439 2396 112 74 37 2340 410405638 410407960 0.000000e+00 2737.0
6 TraesCS6A01G321300 chr6D 90.612 245 14 3 2486 2722 410407945 410408188 1.770000e-82 316.0
7 TraesCS6A01G321300 chr6D 81.633 147 12 13 2920 3057 410408341 410408481 1.160000e-19 108.0
8 TraesCS6A01G321300 chr6D 100.000 40 0 0 1 40 410405585 410405624 1.180000e-09 75.0
9 TraesCS6A01G321300 chr4B 83.333 126 13 6 2366 2487 649542658 649542537 3.220000e-20 110.0
10 TraesCS6A01G321300 chr2B 83.721 86 11 3 2404 2489 1662425 1662507 9.090000e-11 78.7
11 TraesCS6A01G321300 chr2B 95.652 46 2 0 2442 2487 9222082 9222127 1.180000e-09 75.0
12 TraesCS6A01G321300 chr5D 95.652 46 2 0 2442 2487 9088977 9089022 1.180000e-09 75.0
13 TraesCS6A01G321300 chr5D 95.652 46 2 0 2442 2487 494703925 494703970 1.180000e-09 75.0
14 TraesCS6A01G321300 chr4A 95.652 46 2 0 2442 2487 547051346 547051301 1.180000e-09 75.0
15 TraesCS6A01G321300 chr7A 95.349 43 2 0 2442 2484 14673835 14673793 5.470000e-08 69.4
16 TraesCS6A01G321300 chr7D 100.000 31 0 0 2442 2472 234185678 234185708 1.180000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G321300 chr6A 555736488 555739545 3057 False 5648.000000 5648 100.000000 1 3058 1 chr6A.!!$F1 3057
1 TraesCS6A01G321300 chr6B 617183765 617186413 2648 False 1088.666667 2889 92.653333 1 2737 3 chr6B.!!$F1 2736
2 TraesCS6A01G321300 chr6D 410405585 410408481 2896 False 809.000000 2737 90.171000 1 3057 4 chr6D.!!$F1 3056

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
895 967 0.03601 CATCACCTCCACACCCAGTC 60.036 60.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2861 3064 0.03831 GGAGGAGTTGGGAACTTGGG 59.962 60.0 0.0 0.0 43.03 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 138 2.186826 GCCACACGTCCAAGCAACT 61.187 57.895 0.00 0.00 0.00 3.16
121 139 0.882927 GCCACACGTCCAAGCAACTA 60.883 55.000 0.00 0.00 0.00 2.24
122 140 1.148310 CCACACGTCCAAGCAACTAG 58.852 55.000 0.00 0.00 0.00 2.57
159 177 2.476320 GGAAGAATCGCTGCTGGGC 61.476 63.158 2.54 0.00 0.00 5.36
185 203 3.432588 ACCGACGCTCCTGACTCG 61.433 66.667 0.00 0.00 0.00 4.18
186 204 3.125573 CCGACGCTCCTGACTCGA 61.126 66.667 0.00 0.00 0.00 4.04
289 307 4.692155 CCAAGATCGCATAGCATATCAACA 59.308 41.667 0.00 0.00 0.00 3.33
290 308 5.179929 CCAAGATCGCATAGCATATCAACAA 59.820 40.000 0.00 0.00 0.00 2.83
291 309 6.293571 CCAAGATCGCATAGCATATCAACAAA 60.294 38.462 0.00 0.00 0.00 2.83
332 357 0.968405 GGAGCTGGCATGGAAAAACA 59.032 50.000 0.00 0.00 0.00 2.83
333 358 1.344114 GGAGCTGGCATGGAAAAACAA 59.656 47.619 0.00 0.00 0.00 2.83
334 359 2.224257 GGAGCTGGCATGGAAAAACAAA 60.224 45.455 0.00 0.00 0.00 2.83
335 360 2.802247 GAGCTGGCATGGAAAAACAAAC 59.198 45.455 0.00 0.00 0.00 2.93
336 361 2.170187 AGCTGGCATGGAAAAACAAACA 59.830 40.909 0.00 0.00 0.00 2.83
337 362 2.287644 GCTGGCATGGAAAAACAAACAC 59.712 45.455 0.00 0.00 0.00 3.32
356 381 2.843643 CACAAAACAACAGTTCGTTCCG 59.156 45.455 2.74 0.00 34.86 4.30
383 408 1.140052 TCCCGTGCTCTCAGTGAAAAA 59.860 47.619 0.00 0.00 0.00 1.94
417 442 0.604780 ACAGTGGCATGCAGTCAGTC 60.605 55.000 21.36 0.00 31.77 3.51
482 535 5.704888 ACTCGAGAGTCAAGTTCAATGTAG 58.295 41.667 21.68 0.00 36.92 2.74
489 542 5.300752 AGTCAAGTTCAATGTAGTGACAGG 58.699 41.667 4.60 0.00 39.50 4.00
491 544 6.041637 AGTCAAGTTCAATGTAGTGACAGGTA 59.958 38.462 4.60 0.00 39.50 3.08
516 569 1.134995 GCTGGCCTTCAAAGCATAACC 60.135 52.381 3.32 0.00 36.91 2.85
547 600 3.142951 CATGACCAACCCTTACGTTTCA 58.857 45.455 0.00 0.00 0.00 2.69
562 615 7.043590 CCTTACGTTTCATATGGTTCGAGTAAG 60.044 40.741 18.57 18.57 37.87 2.34
566 619 2.035449 TCATATGGTTCGAGTAAGCCCG 59.965 50.000 2.13 0.00 34.56 6.13
574 627 4.856801 AGTAAGCCCGCATGCCCG 62.857 66.667 13.15 2.88 0.00 6.13
581 634 4.578898 CCGCATGCCCGCTACGTA 62.579 66.667 13.15 0.00 0.00 3.57
582 635 2.355837 CGCATGCCCGCTACGTAT 60.356 61.111 13.15 0.00 0.00 3.06
626 684 1.987770 CTGAAATGCCGACATTGTTGC 59.012 47.619 0.00 2.28 45.90 4.17
631 689 1.154413 GCCGACATTGTTGCACTCG 60.154 57.895 7.22 0.00 0.00 4.18
638 696 2.927477 ACATTGTTGCACTCGGTATACG 59.073 45.455 0.00 0.00 46.11 3.06
640 698 3.846423 TTGTTGCACTCGGTATACGTA 57.154 42.857 0.00 0.00 44.69 3.57
641 699 3.135414 TGTTGCACTCGGTATACGTAC 57.865 47.619 0.00 0.00 44.69 3.67
642 700 2.749076 TGTTGCACTCGGTATACGTACT 59.251 45.455 0.00 0.00 44.69 2.73
643 701 3.191162 TGTTGCACTCGGTATACGTACTT 59.809 43.478 0.00 0.00 44.69 2.24
644 702 3.680642 TGCACTCGGTATACGTACTTC 57.319 47.619 0.00 0.00 44.69 3.01
678 736 4.894784 TCTAGGAAAAACTACCACTGCTG 58.105 43.478 0.00 0.00 0.00 4.41
679 737 3.577805 AGGAAAAACTACCACTGCTGT 57.422 42.857 0.00 0.00 0.00 4.40
680 738 4.699925 AGGAAAAACTACCACTGCTGTA 57.300 40.909 0.00 0.00 0.00 2.74
681 739 5.242795 AGGAAAAACTACCACTGCTGTAT 57.757 39.130 0.00 0.00 0.00 2.29
683 741 6.068670 AGGAAAAACTACCACTGCTGTATTT 58.931 36.000 0.00 0.00 0.00 1.40
684 742 6.206829 AGGAAAAACTACCACTGCTGTATTTC 59.793 38.462 0.00 0.00 0.00 2.17
685 743 5.607119 AAAACTACCACTGCTGTATTTCG 57.393 39.130 0.00 0.00 0.00 3.46
686 744 3.955650 ACTACCACTGCTGTATTTCGT 57.044 42.857 0.00 0.00 0.00 3.85
728 793 1.961793 TTGTTCACCGGTGGAGAAAG 58.038 50.000 33.40 7.16 34.40 2.62
760 832 2.938451 TGCATCTCAATCATCACCGTTC 59.062 45.455 0.00 0.00 0.00 3.95
814 886 1.559682 TCCATCTACCCAAAGCTCCAC 59.440 52.381 0.00 0.00 0.00 4.02
816 888 1.281867 CATCTACCCAAAGCTCCACCA 59.718 52.381 0.00 0.00 0.00 4.17
831 903 2.437897 CCACAAAGCAGCTCCCCT 59.562 61.111 0.00 0.00 0.00 4.79
849 921 1.133482 CCTTCCTCTCCTCTCCTCTCC 60.133 61.905 0.00 0.00 0.00 3.71
850 922 1.852965 CTTCCTCTCCTCTCCTCTCCT 59.147 57.143 0.00 0.00 0.00 3.69
851 923 1.994399 TCCTCTCCTCTCCTCTCCTT 58.006 55.000 0.00 0.00 0.00 3.36
852 924 2.293246 TCCTCTCCTCTCCTCTCCTTT 58.707 52.381 0.00 0.00 0.00 3.11
853 925 2.243736 TCCTCTCCTCTCCTCTCCTTTC 59.756 54.545 0.00 0.00 0.00 2.62
895 967 0.036010 CATCACCTCCACACCCAGTC 60.036 60.000 0.00 0.00 0.00 3.51
896 968 0.473694 ATCACCTCCACACCCAGTCA 60.474 55.000 0.00 0.00 0.00 3.41
897 969 1.121407 TCACCTCCACACCCAGTCAG 61.121 60.000 0.00 0.00 0.00 3.51
947 1019 2.029073 ACACGCCAAGACCAGACG 59.971 61.111 0.00 0.00 0.00 4.18
973 1048 2.556622 CACCACCATCACCACCTTTTAC 59.443 50.000 0.00 0.00 0.00 2.01
981 1056 2.441750 TCACCACCTTTTACAAGCCTCT 59.558 45.455 0.00 0.00 0.00 3.69
1340 1436 3.827898 GAGGAGAGGGCGTCCACG 61.828 72.222 9.71 0.00 43.27 4.94
1514 1613 3.636231 CCCAAGCAGGTCCGTCCA 61.636 66.667 0.00 0.00 39.02 4.02
1517 1616 1.374758 CAAGCAGGTCCGTCCACTC 60.375 63.158 0.00 0.00 39.02 3.51
1520 1619 3.374402 CAGGTCCGTCCACTCGCT 61.374 66.667 0.00 0.00 39.02 4.93
1521 1620 3.374402 AGGTCCGTCCACTCGCTG 61.374 66.667 0.00 0.00 39.02 5.18
1522 1621 4.436998 GGTCCGTCCACTCGCTGG 62.437 72.222 0.00 0.00 42.29 4.85
1523 1622 3.681835 GTCCGTCCACTCGCTGGT 61.682 66.667 0.00 0.00 41.52 4.00
1524 1623 3.371063 TCCGTCCACTCGCTGGTC 61.371 66.667 0.00 0.00 41.52 4.02
1531 1640 1.066858 TCCACTCGCTGGTCATCTTTC 60.067 52.381 0.00 0.00 41.52 2.62
1565 1674 3.314635 AGCCACGTAGTACAGCATAGTAC 59.685 47.826 0.38 6.14 41.61 2.73
1566 1675 3.549625 GCCACGTAGTACAGCATAGTACC 60.550 52.174 0.38 0.00 44.19 3.34
1571 1680 5.757320 ACGTAGTACAGCATAGTACCACTAG 59.243 44.000 0.38 0.00 44.19 2.57
1572 1681 5.757320 CGTAGTACAGCATAGTACCACTAGT 59.243 44.000 0.38 0.00 44.19 2.57
1614 1734 3.776969 AGCTGTTGGATGAAGTGATAGGA 59.223 43.478 0.00 0.00 0.00 2.94
1651 1771 0.112995 TTTGACCCATTGCAGGAGCT 59.887 50.000 0.00 0.00 42.74 4.09
1880 2010 9.764363 AATTCTGTAATTTCACTTCTTTTTCCC 57.236 29.630 0.00 0.00 30.98 3.97
1897 2030 4.569719 TTCCCCTCCTTTCATAAGTGAC 57.430 45.455 0.00 0.00 33.11 3.67
1939 2075 1.134965 CAGCTGTCCACTACCACTAGC 60.135 57.143 5.25 0.00 0.00 3.42
1941 2077 2.025226 AGCTGTCCACTACCACTAGCTA 60.025 50.000 0.00 0.00 38.17 3.32
1942 2078 2.359531 GCTGTCCACTACCACTAGCTAG 59.640 54.545 19.44 19.44 0.00 3.42
1943 2079 3.887352 CTGTCCACTACCACTAGCTAGA 58.113 50.000 27.45 3.63 0.00 2.43
1944 2080 4.465886 CTGTCCACTACCACTAGCTAGAT 58.534 47.826 27.45 13.85 0.00 1.98
1945 2081 4.462133 TGTCCACTACCACTAGCTAGATC 58.538 47.826 27.45 5.42 0.00 2.75
1946 2082 3.822167 GTCCACTACCACTAGCTAGATCC 59.178 52.174 27.45 0.00 0.00 3.36
1969 2129 3.341823 CCCATCACCTCACTTCTTCTTG 58.658 50.000 0.00 0.00 0.00 3.02
2043 2203 0.179029 ATGGCCGGCCTGTACATAAC 60.179 55.000 43.34 15.94 36.94 1.89
2084 2244 7.212274 GGAAATTTATGGTGCAATGATTAGCT 58.788 34.615 0.00 0.00 0.00 3.32
2085 2245 7.383300 GGAAATTTATGGTGCAATGATTAGCTC 59.617 37.037 0.00 0.00 0.00 4.09
2087 2247 6.624352 TTTATGGTGCAATGATTAGCTCTC 57.376 37.500 0.00 0.00 0.00 3.20
2187 2347 3.426568 GTCACCTTGCTCCGCTGC 61.427 66.667 0.00 0.00 0.00 5.25
2215 2375 2.355193 GCACGCTTCCTCCTCCTCT 61.355 63.158 0.00 0.00 0.00 3.69
2219 2379 0.686112 CGCTTCCTCCTCCTCTTCCT 60.686 60.000 0.00 0.00 0.00 3.36
2314 2499 1.720233 CGAGACGAAGATCGATCGAGC 60.720 57.143 25.10 25.10 46.67 5.03
2315 2500 0.589223 AGACGAAGATCGATCGAGCC 59.411 55.000 28.21 19.02 43.74 4.70
2316 2501 0.308068 GACGAAGATCGATCGAGCCA 59.692 55.000 28.21 2.86 43.74 4.75
2317 2502 0.955178 ACGAAGATCGATCGAGCCAT 59.045 50.000 28.21 18.37 43.74 4.40
2318 2503 1.068885 ACGAAGATCGATCGAGCCATC 60.069 52.381 28.21 23.85 43.74 3.51
2319 2504 2.048691 CGAAGATCGATCGAGCCATCG 61.049 57.143 30.89 30.89 46.10 3.84
2329 2514 2.997899 GAGCCATCGAGGGAACATG 58.002 57.895 22.53 0.00 38.09 3.21
2330 2515 0.179000 GAGCCATCGAGGGAACATGT 59.821 55.000 22.53 0.00 38.09 3.21
2331 2516 0.179000 AGCCATCGAGGGAACATGTC 59.821 55.000 22.53 0.00 38.09 3.06
2333 2518 0.833287 CCATCGAGGGAACATGTCCT 59.167 55.000 11.55 5.80 46.92 3.85
2334 2519 1.202580 CCATCGAGGGAACATGTCCTC 60.203 57.143 19.24 19.24 46.92 3.71
2335 2520 1.759445 CATCGAGGGAACATGTCCTCT 59.241 52.381 23.95 8.13 46.92 3.69
2336 2521 1.186200 TCGAGGGAACATGTCCTCTG 58.814 55.000 23.95 18.67 46.92 3.35
2337 2522 0.460987 CGAGGGAACATGTCCTCTGC 60.461 60.000 23.95 5.32 46.92 4.26
2338 2523 0.615331 GAGGGAACATGTCCTCTGCA 59.385 55.000 21.06 0.00 46.92 4.41
2339 2524 0.326264 AGGGAACATGTCCTCTGCAC 59.674 55.000 0.00 0.00 46.92 4.57
2340 2525 1.021390 GGGAACATGTCCTCTGCACG 61.021 60.000 0.00 0.00 46.92 5.34
2341 2526 0.320771 GGAACATGTCCTCTGCACGT 60.321 55.000 0.00 0.00 43.98 4.49
2342 2527 1.512926 GAACATGTCCTCTGCACGTT 58.487 50.000 0.00 0.00 0.00 3.99
2343 2528 1.873591 GAACATGTCCTCTGCACGTTT 59.126 47.619 0.00 0.00 0.00 3.60
2344 2529 1.967319 ACATGTCCTCTGCACGTTTT 58.033 45.000 0.00 0.00 0.00 2.43
2345 2530 1.603802 ACATGTCCTCTGCACGTTTTG 59.396 47.619 0.00 0.00 0.00 2.44
2346 2531 1.872952 CATGTCCTCTGCACGTTTTGA 59.127 47.619 0.00 0.00 0.00 2.69
2347 2532 2.031258 TGTCCTCTGCACGTTTTGAA 57.969 45.000 0.00 0.00 0.00 2.69
2348 2533 1.668751 TGTCCTCTGCACGTTTTGAAC 59.331 47.619 0.00 0.00 0.00 3.18
2349 2534 1.002792 GTCCTCTGCACGTTTTGAACC 60.003 52.381 0.00 0.00 0.00 3.62
2350 2535 1.134220 TCCTCTGCACGTTTTGAACCT 60.134 47.619 0.00 0.00 0.00 3.50
2351 2536 1.676006 CCTCTGCACGTTTTGAACCTT 59.324 47.619 0.00 0.00 0.00 3.50
2352 2537 2.099098 CCTCTGCACGTTTTGAACCTTT 59.901 45.455 0.00 0.00 0.00 3.11
2353 2538 3.108144 CTCTGCACGTTTTGAACCTTTG 58.892 45.455 0.00 0.00 0.00 2.77
2354 2539 1.587946 CTGCACGTTTTGAACCTTTGC 59.412 47.619 0.00 0.00 0.00 3.68
2355 2540 1.067565 TGCACGTTTTGAACCTTTGCA 60.068 42.857 0.00 0.00 36.43 4.08
2356 2541 1.587946 GCACGTTTTGAACCTTTGCAG 59.412 47.619 0.00 0.00 31.80 4.41
2357 2542 1.587946 CACGTTTTGAACCTTTGCAGC 59.412 47.619 0.00 0.00 0.00 5.25
2358 2543 0.845768 CGTTTTGAACCTTTGCAGCG 59.154 50.000 0.00 0.00 0.00 5.18
2359 2544 1.797348 CGTTTTGAACCTTTGCAGCGT 60.797 47.619 0.00 0.00 0.00 5.07
2360 2545 2.267426 GTTTTGAACCTTTGCAGCGTT 58.733 42.857 0.00 0.00 0.00 4.84
2361 2546 2.663826 TTTGAACCTTTGCAGCGTTT 57.336 40.000 0.00 0.00 0.00 3.60
2362 2547 2.663826 TTGAACCTTTGCAGCGTTTT 57.336 40.000 0.00 0.00 0.00 2.43
2363 2548 1.919918 TGAACCTTTGCAGCGTTTTG 58.080 45.000 0.00 0.00 0.00 2.44
2364 2549 1.208259 GAACCTTTGCAGCGTTTTGG 58.792 50.000 0.00 0.00 0.00 3.28
2365 2550 0.820871 AACCTTTGCAGCGTTTTGGA 59.179 45.000 0.00 0.00 0.00 3.53
2366 2551 1.039856 ACCTTTGCAGCGTTTTGGAT 58.960 45.000 0.00 0.00 0.00 3.41
2367 2552 1.269726 ACCTTTGCAGCGTTTTGGATG 60.270 47.619 0.00 0.00 0.00 3.51
2370 2555 2.504681 GCAGCGTTTTGGATGCCG 60.505 61.111 0.00 0.00 43.20 5.69
2371 2556 2.179018 CAGCGTTTTGGATGCCGG 59.821 61.111 0.00 0.00 41.38 6.13
2372 2557 2.282180 AGCGTTTTGGATGCCGGT 60.282 55.556 1.90 0.00 41.38 5.28
2373 2558 2.178273 GCGTTTTGGATGCCGGTC 59.822 61.111 1.90 0.00 34.03 4.79
2374 2559 2.478746 CGTTTTGGATGCCGGTCG 59.521 61.111 1.90 0.00 0.00 4.79
2375 2560 2.322081 CGTTTTGGATGCCGGTCGT 61.322 57.895 1.90 0.00 0.00 4.34
2376 2561 1.209127 GTTTTGGATGCCGGTCGTG 59.791 57.895 1.90 0.00 0.00 4.35
2377 2562 1.969064 TTTTGGATGCCGGTCGTGG 60.969 57.895 1.90 0.00 0.00 4.94
2378 2563 2.398840 TTTTGGATGCCGGTCGTGGA 62.399 55.000 1.90 0.00 0.00 4.02
2379 2564 3.599285 TTGGATGCCGGTCGTGGAC 62.599 63.158 1.90 0.00 0.00 4.02
2391 2576 2.437200 TCGTGGACCGAACGTTTATT 57.563 45.000 0.46 0.00 44.03 1.40
2392 2577 2.060284 TCGTGGACCGAACGTTTATTG 58.940 47.619 0.46 0.00 44.03 1.90
2393 2578 1.794116 CGTGGACCGAACGTTTATTGT 59.206 47.619 0.46 0.00 39.56 2.71
2394 2579 2.221517 CGTGGACCGAACGTTTATTGTT 59.778 45.455 0.46 0.00 39.56 2.83
2395 2580 3.303263 CGTGGACCGAACGTTTATTGTTT 60.303 43.478 0.46 0.00 39.56 2.83
2396 2581 4.600032 GTGGACCGAACGTTTATTGTTTT 58.400 39.130 0.46 0.00 0.00 2.43
2397 2582 4.438471 GTGGACCGAACGTTTATTGTTTTG 59.562 41.667 0.46 0.00 0.00 2.44
2398 2583 4.096081 TGGACCGAACGTTTATTGTTTTGT 59.904 37.500 0.46 0.00 0.00 2.83
2399 2584 5.036090 GGACCGAACGTTTATTGTTTTGTT 58.964 37.500 0.46 0.00 0.00 2.83
2400 2585 5.515982 GGACCGAACGTTTATTGTTTTGTTT 59.484 36.000 0.46 0.00 0.00 2.83
2401 2586 6.034790 GGACCGAACGTTTATTGTTTTGTTTT 59.965 34.615 0.46 0.00 0.00 2.43
2402 2587 6.980608 ACCGAACGTTTATTGTTTTGTTTTC 58.019 32.000 0.46 0.00 0.00 2.29
2403 2588 6.585322 ACCGAACGTTTATTGTTTTGTTTTCA 59.415 30.769 0.46 0.00 0.00 2.69
2404 2589 7.108005 CCGAACGTTTATTGTTTTGTTTTCAG 58.892 34.615 0.46 0.00 0.00 3.02
2405 2590 7.201367 CCGAACGTTTATTGTTTTGTTTTCAGT 60.201 33.333 0.46 0.00 0.00 3.41
2406 2591 8.157183 CGAACGTTTATTGTTTTGTTTTCAGTT 58.843 29.630 0.46 0.00 0.00 3.16
2407 2592 9.245284 GAACGTTTATTGTTTTGTTTTCAGTTG 57.755 29.630 0.46 0.00 0.00 3.16
2408 2593 8.300495 ACGTTTATTGTTTTGTTTTCAGTTGT 57.700 26.923 0.00 0.00 0.00 3.32
2409 2594 9.408069 ACGTTTATTGTTTTGTTTTCAGTTGTA 57.592 25.926 0.00 0.00 0.00 2.41
2413 2598 9.535878 TTATTGTTTTGTTTTCAGTTGTATCCC 57.464 29.630 0.00 0.00 0.00 3.85
2414 2599 5.583495 TGTTTTGTTTTCAGTTGTATCCCG 58.417 37.500 0.00 0.00 0.00 5.14
2415 2600 5.125739 TGTTTTGTTTTCAGTTGTATCCCGT 59.874 36.000 0.00 0.00 0.00 5.28
2416 2601 5.838531 TTTGTTTTCAGTTGTATCCCGTT 57.161 34.783 0.00 0.00 0.00 4.44
2417 2602 5.838531 TTGTTTTCAGTTGTATCCCGTTT 57.161 34.783 0.00 0.00 0.00 3.60
2418 2603 6.939132 TTGTTTTCAGTTGTATCCCGTTTA 57.061 33.333 0.00 0.00 0.00 2.01
2419 2604 6.939132 TGTTTTCAGTTGTATCCCGTTTAA 57.061 33.333 0.00 0.00 0.00 1.52
2420 2605 7.330900 TGTTTTCAGTTGTATCCCGTTTAAA 57.669 32.000 0.00 0.00 0.00 1.52
2421 2606 7.194962 TGTTTTCAGTTGTATCCCGTTTAAAC 58.805 34.615 8.35 8.35 0.00 2.01
2422 2607 5.945466 TTCAGTTGTATCCCGTTTAAACC 57.055 39.130 12.66 0.00 0.00 3.27
2423 2608 5.231702 TCAGTTGTATCCCGTTTAAACCT 57.768 39.130 12.66 0.00 0.00 3.50
2424 2609 4.998672 TCAGTTGTATCCCGTTTAAACCTG 59.001 41.667 12.66 10.13 0.00 4.00
2425 2610 4.998672 CAGTTGTATCCCGTTTAAACCTGA 59.001 41.667 12.66 9.44 0.00 3.86
2426 2611 5.646360 CAGTTGTATCCCGTTTAAACCTGAT 59.354 40.000 12.66 15.19 0.00 2.90
2427 2612 5.646360 AGTTGTATCCCGTTTAAACCTGATG 59.354 40.000 19.82 5.66 0.00 3.07
2428 2613 3.942748 TGTATCCCGTTTAAACCTGATGC 59.057 43.478 19.82 18.92 0.00 3.91
2429 2614 1.828979 TCCCGTTTAAACCTGATGCC 58.171 50.000 12.66 0.00 0.00 4.40
2430 2615 1.353022 TCCCGTTTAAACCTGATGCCT 59.647 47.619 12.66 0.00 0.00 4.75
2431 2616 1.472480 CCCGTTTAAACCTGATGCCTG 59.528 52.381 12.66 0.00 0.00 4.85
2432 2617 2.432444 CCGTTTAAACCTGATGCCTGA 58.568 47.619 12.66 0.00 0.00 3.86
2433 2618 2.420022 CCGTTTAAACCTGATGCCTGAG 59.580 50.000 12.66 0.00 0.00 3.35
2434 2619 2.420022 CGTTTAAACCTGATGCCTGAGG 59.580 50.000 12.66 0.00 35.26 3.86
2435 2620 2.755103 GTTTAAACCTGATGCCTGAGGG 59.245 50.000 7.12 0.00 33.16 4.30
2461 2646 8.898792 GCTTTATTATTAATTTAAAGCCGGACG 58.101 33.333 26.38 9.58 46.11 4.79
2462 2647 9.940166 CTTTATTATTAATTTAAAGCCGGACGT 57.060 29.630 5.05 0.00 0.00 4.34
2465 2650 8.845942 ATTATTAATTTAAAGCCGGACGTTTC 57.154 30.769 5.05 0.00 0.00 2.78
2466 2651 5.945466 TTAATTTAAAGCCGGACGTTTCT 57.055 34.783 5.05 0.00 0.00 2.52
2467 2652 7.614124 ATTAATTTAAAGCCGGACGTTTCTA 57.386 32.000 5.05 0.00 0.00 2.10
2468 2653 5.541098 AATTTAAAGCCGGACGTTTCTAG 57.459 39.130 5.05 0.00 0.00 2.43
2469 2654 2.000429 TAAAGCCGGACGTTTCTAGC 58.000 50.000 5.05 0.00 0.00 3.42
2470 2655 1.012486 AAAGCCGGACGTTTCTAGCG 61.012 55.000 5.05 0.00 0.00 4.26
2471 2656 2.126189 GCCGGACGTTTCTAGCGT 60.126 61.111 5.05 0.00 45.86 5.07
2477 2662 2.251600 ACGTTTCTAGCGTCTCCGT 58.748 52.632 0.00 0.00 38.23 4.69
2478 2663 0.595095 ACGTTTCTAGCGTCTCCGTT 59.405 50.000 0.00 0.00 38.23 4.44
2479 2664 1.257539 CGTTTCTAGCGTCTCCGTTC 58.742 55.000 0.00 0.00 36.15 3.95
2480 2665 1.626747 GTTTCTAGCGTCTCCGTTCC 58.373 55.000 0.00 0.00 36.15 3.62
2481 2666 1.068055 GTTTCTAGCGTCTCCGTTCCA 60.068 52.381 0.00 0.00 36.15 3.53
2482 2667 1.250328 TTCTAGCGTCTCCGTTCCAA 58.750 50.000 0.00 0.00 36.15 3.53
2483 2668 1.250328 TCTAGCGTCTCCGTTCCAAA 58.750 50.000 0.00 0.00 36.15 3.28
2484 2669 1.614903 TCTAGCGTCTCCGTTCCAAAA 59.385 47.619 0.00 0.00 36.15 2.44
2549 2734 4.215185 GGCTAGATCGGTGTTAGTAGTACC 59.785 50.000 0.00 0.00 0.00 3.34
2553 2738 4.639310 AGATCGGTGTTAGTAGTACCACTG 59.361 45.833 4.03 7.59 35.90 3.66
2605 2797 3.726517 TGCTCGGCTTTGCGCTTC 61.727 61.111 9.73 0.00 39.13 3.86
2622 2814 2.792542 GCTTCGCGGGAGAAAATCAATG 60.793 50.000 6.13 0.00 0.00 2.82
2629 2821 2.760650 GGGAGAAAATCAATGGTGGGAC 59.239 50.000 0.00 0.00 0.00 4.46
2630 2822 2.423538 GGAGAAAATCAATGGTGGGACG 59.576 50.000 0.00 0.00 0.00 4.79
2632 2824 0.894835 AAAATCAATGGTGGGACGGC 59.105 50.000 0.00 0.00 0.00 5.68
2633 2825 0.039618 AAATCAATGGTGGGACGGCT 59.960 50.000 0.00 0.00 0.00 5.52
2634 2826 0.916086 AATCAATGGTGGGACGGCTA 59.084 50.000 0.00 0.00 0.00 3.93
2635 2827 1.140312 ATCAATGGTGGGACGGCTAT 58.860 50.000 0.00 0.00 0.00 2.97
2636 2828 0.180171 TCAATGGTGGGACGGCTATG 59.820 55.000 0.00 0.00 0.00 2.23
2637 2829 0.819259 CAATGGTGGGACGGCTATGG 60.819 60.000 0.00 0.00 0.00 2.74
2665 2865 2.827959 CTTTAGCGCGTTTCGTGGGC 62.828 60.000 8.43 0.00 44.76 5.36
2721 2921 6.444633 CGGTCGTAGTGGATTTGTATAAGAT 58.555 40.000 0.00 0.00 0.00 2.40
2722 2922 7.587629 CGGTCGTAGTGGATTTGTATAAGATA 58.412 38.462 0.00 0.00 0.00 1.98
2723 2923 8.077991 CGGTCGTAGTGGATTTGTATAAGATAA 58.922 37.037 0.00 0.00 0.00 1.75
2724 2924 9.408069 GGTCGTAGTGGATTTGTATAAGATAAG 57.592 37.037 0.00 0.00 0.00 1.73
2735 2935 9.883142 ATTTGTATAAGATAAGAGGATAGCAGC 57.117 33.333 0.00 0.00 0.00 5.25
2738 2938 9.040259 TGTATAAGATAAGAGGATAGCAGCATT 57.960 33.333 0.00 0.00 0.00 3.56
2770 2970 9.696572 ATATAGAACTAGTAATAATGCCCGAGA 57.303 33.333 0.00 0.00 0.00 4.04
2771 2971 6.726490 AGAACTAGTAATAATGCCCGAGAA 57.274 37.500 0.00 0.00 0.00 2.87
2772 2972 7.120923 AGAACTAGTAATAATGCCCGAGAAA 57.879 36.000 0.00 0.00 0.00 2.52
2773 2973 7.562135 AGAACTAGTAATAATGCCCGAGAAAA 58.438 34.615 0.00 0.00 0.00 2.29
2774 2974 8.044908 AGAACTAGTAATAATGCCCGAGAAAAA 58.955 33.333 0.00 0.00 0.00 1.94
2806 3006 4.901627 GACTTTGTGTCGTGCAGC 57.098 55.556 0.00 0.00 35.81 5.25
2807 3007 2.013807 GACTTTGTGTCGTGCAGCA 58.986 52.632 0.00 0.00 35.81 4.41
2808 3008 0.316196 GACTTTGTGTCGTGCAGCAC 60.316 55.000 16.21 16.21 35.81 4.40
2809 3009 0.744414 ACTTTGTGTCGTGCAGCACT 60.744 50.000 23.15 0.00 36.63 4.40
2810 3010 0.378257 CTTTGTGTCGTGCAGCACTT 59.622 50.000 23.15 0.00 36.63 3.16
2811 3011 0.098552 TTTGTGTCGTGCAGCACTTG 59.901 50.000 23.15 8.97 36.63 3.16
2812 3012 0.742635 TTGTGTCGTGCAGCACTTGA 60.743 50.000 23.15 11.29 36.63 3.02
2813 3013 0.742635 TGTGTCGTGCAGCACTTGAA 60.743 50.000 23.15 3.61 36.63 2.69
2817 3017 1.264020 GTCGTGCAGCACTTGAATTGA 59.736 47.619 23.15 8.36 31.34 2.57
2829 3029 4.858692 CACTTGAATTGAACGGGCTTTATG 59.141 41.667 0.00 0.00 0.00 1.90
2833 3033 2.570415 TTGAACGGGCTTTATGGTCA 57.430 45.000 0.00 0.00 0.00 4.02
2834 3034 1.816074 TGAACGGGCTTTATGGTCAC 58.184 50.000 0.00 0.00 0.00 3.67
2835 3035 0.725117 GAACGGGCTTTATGGTCACG 59.275 55.000 0.00 0.00 0.00 4.35
2849 3052 2.483877 TGGTCACGCATGATCTTTGAAC 59.516 45.455 0.00 0.00 36.84 3.18
2850 3053 2.474526 GGTCACGCATGATCTTTGAACG 60.475 50.000 0.00 0.00 37.14 3.95
2851 3054 2.411748 GTCACGCATGATCTTTGAACGA 59.588 45.455 0.00 0.00 37.14 3.85
2852 3055 3.062639 GTCACGCATGATCTTTGAACGAT 59.937 43.478 0.00 0.00 37.14 3.73
2855 3058 4.261349 CACGCATGATCTTTGAACGATTTG 59.739 41.667 0.00 0.00 0.00 2.32
2856 3059 4.083324 ACGCATGATCTTTGAACGATTTGT 60.083 37.500 0.00 0.00 0.00 2.83
2857 3060 5.121611 ACGCATGATCTTTGAACGATTTGTA 59.878 36.000 0.00 0.00 0.00 2.41
2861 3064 6.677781 TGATCTTTGAACGATTTGTATCCC 57.322 37.500 0.00 0.00 0.00 3.85
2862 3065 5.588648 TGATCTTTGAACGATTTGTATCCCC 59.411 40.000 0.00 0.00 0.00 4.81
2864 3067 3.722908 TTGAACGATTTGTATCCCCCA 57.277 42.857 0.00 0.00 0.00 4.96
2866 3069 3.616219 TGAACGATTTGTATCCCCCAAG 58.384 45.455 0.00 0.00 0.00 3.61
2867 3070 3.009695 TGAACGATTTGTATCCCCCAAGT 59.990 43.478 0.00 0.00 0.00 3.16
2871 3095 2.911552 TTTGTATCCCCCAAGTTCCC 57.088 50.000 0.00 0.00 0.00 3.97
2876 3100 0.704664 ATCCCCCAAGTTCCCAACTC 59.295 55.000 0.00 0.00 41.91 3.01
2877 3101 1.076727 CCCCCAAGTTCCCAACTCC 59.923 63.158 0.00 0.00 41.91 3.85
2878 3102 1.435346 CCCCCAAGTTCCCAACTCCT 61.435 60.000 0.00 0.00 41.91 3.69
2879 3103 0.038310 CCCCAAGTTCCCAACTCCTC 59.962 60.000 0.00 0.00 41.91 3.71
2893 3117 4.159135 CCAACTCCTCCTGAATCATTTTGG 59.841 45.833 0.00 0.00 0.00 3.28
2894 3118 4.664688 ACTCCTCCTGAATCATTTTGGT 57.335 40.909 0.00 0.00 0.00 3.67
2895 3119 5.003096 ACTCCTCCTGAATCATTTTGGTT 57.997 39.130 0.00 0.00 0.00 3.67
2896 3120 5.397360 ACTCCTCCTGAATCATTTTGGTTT 58.603 37.500 0.00 0.00 0.00 3.27
2897 3121 5.840693 ACTCCTCCTGAATCATTTTGGTTTT 59.159 36.000 0.00 0.00 0.00 2.43
2898 3122 6.327365 ACTCCTCCTGAATCATTTTGGTTTTT 59.673 34.615 0.00 0.00 0.00 1.94
2899 3123 6.758254 TCCTCCTGAATCATTTTGGTTTTTC 58.242 36.000 0.00 0.00 0.00 2.29
2900 3124 6.554605 TCCTCCTGAATCATTTTGGTTTTTCT 59.445 34.615 0.00 0.00 0.00 2.52
2901 3125 6.647895 CCTCCTGAATCATTTTGGTTTTTCTG 59.352 38.462 0.00 0.00 0.00 3.02
2902 3126 7.358770 TCCTGAATCATTTTGGTTTTTCTGA 57.641 32.000 0.00 0.00 0.00 3.27
2903 3127 7.790027 TCCTGAATCATTTTGGTTTTTCTGAA 58.210 30.769 0.00 0.00 0.00 3.02
2904 3128 7.710475 TCCTGAATCATTTTGGTTTTTCTGAAC 59.290 33.333 0.00 0.00 0.00 3.18
2905 3129 7.306749 CCTGAATCATTTTGGTTTTTCTGAACG 60.307 37.037 0.00 0.00 0.00 3.95
2906 3130 5.905480 ATCATTTTGGTTTTTCTGAACGC 57.095 34.783 0.00 0.00 0.00 4.84
2907 3131 4.748892 TCATTTTGGTTTTTCTGAACGCA 58.251 34.783 0.00 0.00 0.00 5.24
2908 3132 5.355596 TCATTTTGGTTTTTCTGAACGCAT 58.644 33.333 0.00 0.00 0.00 4.73
2909 3133 5.461737 TCATTTTGGTTTTTCTGAACGCATC 59.538 36.000 0.00 0.00 0.00 3.91
2910 3134 4.377839 TTTGGTTTTTCTGAACGCATCA 57.622 36.364 0.00 0.00 36.38 3.07
2919 3143 2.254546 TGAACGCATCAGGAGTTGTT 57.745 45.000 0.00 0.00 39.78 2.83
2920 3144 2.571212 TGAACGCATCAGGAGTTGTTT 58.429 42.857 0.00 0.00 39.78 2.83
2921 3145 2.948979 TGAACGCATCAGGAGTTGTTTT 59.051 40.909 0.00 0.00 39.78 2.43
2922 3146 3.380004 TGAACGCATCAGGAGTTGTTTTT 59.620 39.130 0.00 0.00 39.78 1.94
2948 3172 4.758674 TCTTTTCTCTGAACAAGCCATCAG 59.241 41.667 0.00 0.00 43.51 2.90
2953 3177 2.373169 TCTGAACAAGCCATCAGGAGTT 59.627 45.455 3.23 0.00 42.62 3.01
2958 3182 1.280133 CAAGCCATCAGGAGTTCTGGA 59.720 52.381 0.00 0.00 43.53 3.86
2966 3190 6.335022 CCATCAGGAGTTCTGGAAGACTAGT 61.335 48.000 0.00 0.00 39.55 2.57
2976 3200 3.833070 CTGGAAGACTAGTGGTAAGTGGT 59.167 47.826 0.00 0.00 34.07 4.16
2980 3204 5.105837 GGAAGACTAGTGGTAAGTGGTGTAG 60.106 48.000 0.00 0.00 0.00 2.74
2989 3213 3.746492 GGTAAGTGGTGTAGCAGAAACAG 59.254 47.826 0.00 0.00 0.00 3.16
2993 3217 2.544267 GTGGTGTAGCAGAAACAGTGAC 59.456 50.000 0.00 0.00 0.00 3.67
2995 3219 1.792949 GTGTAGCAGAAACAGTGACCG 59.207 52.381 0.00 0.00 0.00 4.79
2998 3222 1.800805 AGCAGAAACAGTGACCGATG 58.199 50.000 0.00 0.00 0.00 3.84
3019 3252 1.594331 GTTTGAAGACAAGAGGCCGT 58.406 50.000 0.00 0.00 37.32 5.68
3057 3290 2.025589 TGACCACGCACTTTGTAACA 57.974 45.000 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 107 4.166011 GTGGCGACTGGCGAATGC 62.166 66.667 7.31 0.00 44.92 3.56
90 108 2.741985 TGTGGCGACTGGCGAATG 60.742 61.111 7.31 0.00 44.92 2.67
91 109 2.742372 GTGTGGCGACTGGCGAAT 60.742 61.111 7.31 0.00 44.92 3.34
96 114 3.800685 TTGGACGTGTGGCGACTGG 62.801 63.158 0.00 0.00 44.77 4.00
99 117 3.712881 GCTTGGACGTGTGGCGAC 61.713 66.667 0.00 0.00 44.77 5.19
120 138 2.823924 TGTTTGGAAGCGTGCTACTA 57.176 45.000 0.00 0.00 0.00 1.82
121 139 1.873591 CTTGTTTGGAAGCGTGCTACT 59.126 47.619 0.00 0.00 0.00 2.57
122 140 1.069227 CCTTGTTTGGAAGCGTGCTAC 60.069 52.381 0.00 0.00 0.00 3.58
263 281 2.175878 ATGCTATGCGATCTTGGGAC 57.824 50.000 0.00 0.00 0.00 4.46
289 307 1.064685 CCCAGGATAAGAAGGCCGTTT 60.065 52.381 0.00 0.00 0.00 3.60
290 308 0.546598 CCCAGGATAAGAAGGCCGTT 59.453 55.000 0.00 0.00 0.00 4.44
291 309 1.984288 GCCCAGGATAAGAAGGCCGT 61.984 60.000 0.00 0.00 37.66 5.68
320 339 5.693814 TGTTTTGTGTTTGTTTTTCCATGC 58.306 33.333 0.00 0.00 0.00 4.06
324 349 6.720343 ACTGTTGTTTTGTGTTTGTTTTTCC 58.280 32.000 0.00 0.00 0.00 3.13
332 357 4.682401 GGAACGAACTGTTGTTTTGTGTTT 59.318 37.500 0.00 0.00 42.09 2.83
333 358 4.231439 GGAACGAACTGTTGTTTTGTGTT 58.769 39.130 0.00 0.00 42.09 3.32
334 359 3.828786 GGAACGAACTGTTGTTTTGTGT 58.171 40.909 0.00 0.00 42.09 3.72
383 408 3.377172 GCCACTGTACAACTGTTCAAACT 59.623 43.478 0.00 0.00 0.00 2.66
482 535 0.955919 GCCAGCCACTTACCTGTCAC 60.956 60.000 0.00 0.00 0.00 3.67
489 542 1.541588 CTTTGAAGGCCAGCCACTTAC 59.458 52.381 12.03 0.00 38.92 2.34
491 544 1.466851 GCTTTGAAGGCCAGCCACTT 61.467 55.000 12.03 0.00 38.92 3.16
516 569 1.335872 GGTTGGTCATGGCTTTTCGTG 60.336 52.381 0.00 0.00 0.00 4.35
547 600 1.270147 GCGGGCTTACTCGAACCATAT 60.270 52.381 0.00 0.00 0.00 1.78
566 619 1.569493 CAATACGTAGCGGGCATGC 59.431 57.895 9.90 9.90 0.00 4.06
626 684 2.291741 GGGGAAGTACGTATACCGAGTG 59.708 54.545 0.00 0.00 40.70 3.51
631 689 4.486125 TTTTGGGGGAAGTACGTATACC 57.514 45.455 0.00 2.89 30.88 2.73
655 713 5.013183 ACAGCAGTGGTAGTTTTTCCTAGAT 59.987 40.000 0.00 0.00 0.00 1.98
666 724 3.955650 ACGAAATACAGCAGTGGTAGT 57.044 42.857 0.00 0.00 0.00 2.73
675 733 5.569413 CCATAGGTGAAAACGAAATACAGC 58.431 41.667 0.00 0.00 0.00 4.40
678 736 4.584394 CGCCATAGGTGAAAACGAAATAC 58.416 43.478 0.00 0.00 34.74 1.89
679 737 3.064271 GCGCCATAGGTGAAAACGAAATA 59.936 43.478 0.00 0.00 34.74 1.40
680 738 2.159435 GCGCCATAGGTGAAAACGAAAT 60.159 45.455 0.00 0.00 34.74 2.17
681 739 1.198178 GCGCCATAGGTGAAAACGAAA 59.802 47.619 0.00 0.00 34.74 3.46
683 741 0.036765 AGCGCCATAGGTGAAAACGA 60.037 50.000 2.29 0.00 34.74 3.85
684 742 0.096976 CAGCGCCATAGGTGAAAACG 59.903 55.000 2.29 0.00 41.72 3.60
685 743 1.448985 TCAGCGCCATAGGTGAAAAC 58.551 50.000 2.29 0.00 44.40 2.43
686 744 3.946604 TCAGCGCCATAGGTGAAAA 57.053 47.368 2.29 0.00 44.40 2.29
728 793 2.894565 GAGATGCATGGCGAGCTGC 61.895 63.158 2.46 0.00 45.38 5.25
814 886 1.228675 AAGGGGAGCTGCTTTGTGG 60.229 57.895 2.53 0.00 0.00 4.17
816 888 1.075659 GGAAGGGGAGCTGCTTTGT 59.924 57.895 2.53 0.00 0.00 2.83
831 903 1.994399 AGGAGAGGAGAGGAGAGGAA 58.006 55.000 0.00 0.00 0.00 3.36
849 921 9.014297 GTGGATTTGGATGGGTTATATAGAAAG 57.986 37.037 0.00 0.00 0.00 2.62
850 922 7.947890 GGTGGATTTGGATGGGTTATATAGAAA 59.052 37.037 0.00 0.00 0.00 2.52
851 923 7.074366 TGGTGGATTTGGATGGGTTATATAGAA 59.926 37.037 0.00 0.00 0.00 2.10
852 924 6.564539 TGGTGGATTTGGATGGGTTATATAGA 59.435 38.462 0.00 0.00 0.00 1.98
853 925 6.789268 TGGTGGATTTGGATGGGTTATATAG 58.211 40.000 0.00 0.00 0.00 1.31
895 967 0.949105 GGCACTGTTACGGGTGACTG 60.949 60.000 11.22 0.24 38.35 3.51
896 968 1.370064 GGCACTGTTACGGGTGACT 59.630 57.895 11.22 0.00 38.35 3.41
897 969 1.670083 GGGCACTGTTACGGGTGAC 60.670 63.158 11.22 8.57 40.45 3.67
947 1019 2.676471 GGTGATGGTGGTGGTGGC 60.676 66.667 0.00 0.00 0.00 5.01
973 1048 1.739562 GTGTGGCGAGAGAGGCTTG 60.740 63.158 0.00 0.00 37.59 4.01
1006 1081 0.319040 CATAGCTGGATCGTCGTGGG 60.319 60.000 0.00 0.00 0.00 4.61
1018 1093 1.670295 TGTTAACGCATGCCATAGCTG 59.330 47.619 13.15 0.00 40.80 4.24
1325 1421 4.131088 GTCGTGGACGCCCTCTCC 62.131 72.222 0.00 0.00 39.60 3.71
1514 1613 0.976641 TGGAAAGATGACCAGCGAGT 59.023 50.000 0.00 0.00 0.00 4.18
1520 1619 1.550524 CGAGGACTGGAAAGATGACCA 59.449 52.381 0.00 0.00 34.81 4.02
1521 1620 1.550976 ACGAGGACTGGAAAGATGACC 59.449 52.381 0.00 0.00 0.00 4.02
1522 1621 3.320673 AACGAGGACTGGAAAGATGAC 57.679 47.619 0.00 0.00 0.00 3.06
1523 1622 3.119101 GCTAACGAGGACTGGAAAGATGA 60.119 47.826 0.00 0.00 0.00 2.92
1524 1623 3.190874 GCTAACGAGGACTGGAAAGATG 58.809 50.000 0.00 0.00 0.00 2.90
1531 1640 4.913126 GTGGCTAACGAGGACTGG 57.087 61.111 0.00 0.00 0.00 4.00
1571 1680 9.931210 ACAGCTCTTAATTAATTAATTGCGTAC 57.069 29.630 26.61 15.95 36.62 3.67
1574 1683 8.745837 CCAACAGCTCTTAATTAATTAATTGCG 58.254 33.333 26.61 18.65 36.62 4.85
1575 1684 9.801873 TCCAACAGCTCTTAATTAATTAATTGC 57.198 29.630 26.61 21.56 36.62 3.56
1585 1705 6.240894 TCACTTCATCCAACAGCTCTTAATT 58.759 36.000 0.00 0.00 0.00 1.40
1614 1734 5.882557 GGTCAAACCATCTGTAATGAGACAT 59.117 40.000 0.00 0.00 38.42 3.06
1651 1771 2.125326 CGGCCGGTCACCTCTCATA 61.125 63.158 20.10 0.00 0.00 2.15
1801 1925 0.904649 TGGACACTGGCCATGTAGAG 59.095 55.000 5.51 0.00 0.00 2.43
1802 1926 1.583556 ATGGACACTGGCCATGTAGA 58.416 50.000 16.34 3.77 44.21 2.59
1880 2010 2.906354 CGGGTCACTTATGAAAGGAGG 58.094 52.381 0.00 0.00 36.31 4.30
1897 2030 0.605319 AGCTAGAGATCGAGAGCGGG 60.605 60.000 0.00 0.00 39.96 6.13
1946 2082 0.995024 AAGAAGTGAGGTGATGGGGG 59.005 55.000 0.00 0.00 0.00 5.40
2043 2203 2.093306 TTCCCATCTACACACAAGCG 57.907 50.000 0.00 0.00 0.00 4.68
2200 2360 0.686112 AGGAAGAGGAGGAGGAAGCG 60.686 60.000 0.00 0.00 0.00 4.68
2215 2375 2.434185 GCACATCGCGTGGAGGAA 60.434 61.111 5.77 0.00 46.45 3.36
2293 2458 0.232559 TCGATCGATCTTCGTCTCGC 59.767 55.000 22.43 0.00 41.74 5.03
2314 2499 3.386543 GGACATGTTCCCTCGATGG 57.613 57.895 0.00 0.00 38.70 3.51
2322 2507 0.320771 ACGTGCAGAGGACATGTTCC 60.321 55.000 0.00 2.84 46.33 3.62
2323 2508 1.512926 AACGTGCAGAGGACATGTTC 58.487 50.000 0.00 0.00 42.16 3.18
2324 2509 1.967319 AAACGTGCAGAGGACATGTT 58.033 45.000 0.00 0.00 46.49 2.71
2325 2510 1.603802 CAAAACGTGCAGAGGACATGT 59.396 47.619 0.00 0.00 38.90 3.21
2326 2511 1.872952 TCAAAACGTGCAGAGGACATG 59.127 47.619 0.00 0.00 0.00 3.21
2327 2512 2.254546 TCAAAACGTGCAGAGGACAT 57.745 45.000 0.00 0.00 0.00 3.06
2328 2513 1.668751 GTTCAAAACGTGCAGAGGACA 59.331 47.619 0.00 0.00 0.00 4.02
2329 2514 1.002792 GGTTCAAAACGTGCAGAGGAC 60.003 52.381 0.00 0.00 0.00 3.85
2330 2515 1.134220 AGGTTCAAAACGTGCAGAGGA 60.134 47.619 0.00 0.00 0.00 3.71
2331 2516 1.308998 AGGTTCAAAACGTGCAGAGG 58.691 50.000 0.00 0.00 0.00 3.69
2332 2517 3.108144 CAAAGGTTCAAAACGTGCAGAG 58.892 45.455 0.00 0.00 0.00 3.35
2333 2518 2.733858 GCAAAGGTTCAAAACGTGCAGA 60.734 45.455 0.00 0.00 35.61 4.26
2334 2519 1.587946 GCAAAGGTTCAAAACGTGCAG 59.412 47.619 0.00 0.00 35.61 4.41
2335 2520 1.067565 TGCAAAGGTTCAAAACGTGCA 60.068 42.857 7.75 7.75 40.03 4.57
2336 2521 1.587946 CTGCAAAGGTTCAAAACGTGC 59.412 47.619 0.00 3.43 35.90 5.34
2337 2522 1.587946 GCTGCAAAGGTTCAAAACGTG 59.412 47.619 0.00 0.00 0.00 4.49
2338 2523 1.797348 CGCTGCAAAGGTTCAAAACGT 60.797 47.619 0.00 0.00 0.00 3.99
2339 2524 0.845768 CGCTGCAAAGGTTCAAAACG 59.154 50.000 0.00 0.00 0.00 3.60
2340 2525 1.921243 ACGCTGCAAAGGTTCAAAAC 58.079 45.000 0.00 0.00 0.00 2.43
2341 2526 2.663826 AACGCTGCAAAGGTTCAAAA 57.336 40.000 0.00 0.00 0.00 2.44
2342 2527 2.663826 AAACGCTGCAAAGGTTCAAA 57.336 40.000 0.00 0.00 0.00 2.69
2343 2528 2.266554 CAAAACGCTGCAAAGGTTCAA 58.733 42.857 0.00 0.00 0.00 2.69
2344 2529 1.470632 CCAAAACGCTGCAAAGGTTCA 60.471 47.619 0.00 0.00 0.00 3.18
2345 2530 1.202359 TCCAAAACGCTGCAAAGGTTC 60.202 47.619 0.00 0.00 0.00 3.62
2346 2531 0.820871 TCCAAAACGCTGCAAAGGTT 59.179 45.000 0.00 0.00 0.00 3.50
2347 2532 1.039856 ATCCAAAACGCTGCAAAGGT 58.960 45.000 0.00 0.00 0.00 3.50
2348 2533 1.421382 CATCCAAAACGCTGCAAAGG 58.579 50.000 0.00 0.00 0.00 3.11
2349 2534 0.785979 GCATCCAAAACGCTGCAAAG 59.214 50.000 0.00 0.00 34.77 2.77
2350 2535 0.599728 GGCATCCAAAACGCTGCAAA 60.600 50.000 0.00 0.00 36.34 3.68
2351 2536 1.006337 GGCATCCAAAACGCTGCAA 60.006 52.632 0.00 0.00 36.34 4.08
2352 2537 2.650196 GGCATCCAAAACGCTGCA 59.350 55.556 0.00 0.00 36.34 4.41
2353 2538 2.504681 CGGCATCCAAAACGCTGC 60.505 61.111 0.00 0.00 0.00 5.25
2354 2539 2.179018 CCGGCATCCAAAACGCTG 59.821 61.111 0.00 0.00 0.00 5.18
2355 2540 2.282180 ACCGGCATCCAAAACGCT 60.282 55.556 0.00 0.00 0.00 5.07
2356 2541 2.178273 GACCGGCATCCAAAACGC 59.822 61.111 0.00 0.00 0.00 4.84
2357 2542 2.322081 ACGACCGGCATCCAAAACG 61.322 57.895 0.00 0.00 0.00 3.60
2358 2543 1.209127 CACGACCGGCATCCAAAAC 59.791 57.895 0.00 0.00 0.00 2.43
2359 2544 1.969064 CCACGACCGGCATCCAAAA 60.969 57.895 0.00 0.00 0.00 2.44
2360 2545 2.359354 CCACGACCGGCATCCAAA 60.359 61.111 0.00 0.00 0.00 3.28
2361 2546 3.315140 TCCACGACCGGCATCCAA 61.315 61.111 0.00 0.00 0.00 3.53
2362 2547 4.077184 GTCCACGACCGGCATCCA 62.077 66.667 0.00 0.00 0.00 3.41
2363 2548 4.832608 GGTCCACGACCGGCATCC 62.833 72.222 0.00 0.00 43.14 3.51
2373 2558 1.794116 ACAATAAACGTTCGGTCCACG 59.206 47.619 0.00 0.38 46.11 4.94
2374 2559 3.883631 AACAATAAACGTTCGGTCCAC 57.116 42.857 0.00 0.00 0.00 4.02
2375 2560 4.096081 ACAAAACAATAAACGTTCGGTCCA 59.904 37.500 0.00 0.00 0.00 4.02
2376 2561 4.600032 ACAAAACAATAAACGTTCGGTCC 58.400 39.130 0.00 0.00 0.00 4.46
2377 2562 6.557593 AAACAAAACAATAAACGTTCGGTC 57.442 33.333 0.00 0.00 0.00 4.79
2378 2563 6.585322 TGAAAACAAAACAATAAACGTTCGGT 59.415 30.769 0.00 0.00 0.00 4.69
2379 2564 6.979509 TGAAAACAAAACAATAAACGTTCGG 58.020 32.000 0.00 0.00 0.00 4.30
2380 2565 7.659159 ACTGAAAACAAAACAATAAACGTTCG 58.341 30.769 0.00 0.00 0.00 3.95
2381 2566 9.245284 CAACTGAAAACAAAACAATAAACGTTC 57.755 29.630 0.00 0.00 0.00 3.95
2382 2567 8.766151 ACAACTGAAAACAAAACAATAAACGTT 58.234 25.926 0.00 0.00 0.00 3.99
2383 2568 8.300495 ACAACTGAAAACAAAACAATAAACGT 57.700 26.923 0.00 0.00 0.00 3.99
2387 2572 9.535878 GGGATACAACTGAAAACAAAACAATAA 57.464 29.630 0.00 0.00 39.74 1.40
2388 2573 7.863375 CGGGATACAACTGAAAACAAAACAATA 59.137 33.333 0.00 0.00 39.74 1.90
2389 2574 6.699642 CGGGATACAACTGAAAACAAAACAAT 59.300 34.615 0.00 0.00 39.74 2.71
2390 2575 6.037098 CGGGATACAACTGAAAACAAAACAA 58.963 36.000 0.00 0.00 39.74 2.83
2391 2576 5.125739 ACGGGATACAACTGAAAACAAAACA 59.874 36.000 0.00 0.00 39.74 2.83
2392 2577 5.584442 ACGGGATACAACTGAAAACAAAAC 58.416 37.500 0.00 0.00 39.74 2.43
2393 2578 5.838531 ACGGGATACAACTGAAAACAAAA 57.161 34.783 0.00 0.00 39.74 2.44
2394 2579 5.838531 AACGGGATACAACTGAAAACAAA 57.161 34.783 0.00 0.00 39.74 2.83
2395 2580 5.838531 AAACGGGATACAACTGAAAACAA 57.161 34.783 0.00 0.00 39.74 2.83
2396 2581 6.939132 TTAAACGGGATACAACTGAAAACA 57.061 33.333 0.00 0.00 39.74 2.83
2397 2582 6.638063 GGTTTAAACGGGATACAACTGAAAAC 59.362 38.462 12.07 0.00 39.74 2.43
2398 2583 6.546772 AGGTTTAAACGGGATACAACTGAAAA 59.453 34.615 12.07 0.00 39.74 2.29
2399 2584 6.016943 CAGGTTTAAACGGGATACAACTGAAA 60.017 38.462 12.07 0.00 39.74 2.69
2400 2585 5.470777 CAGGTTTAAACGGGATACAACTGAA 59.529 40.000 12.07 0.00 39.74 3.02
2401 2586 4.998672 CAGGTTTAAACGGGATACAACTGA 59.001 41.667 12.07 0.00 39.74 3.41
2402 2587 4.998672 TCAGGTTTAAACGGGATACAACTG 59.001 41.667 12.07 9.90 39.74 3.16
2403 2588 5.231702 TCAGGTTTAAACGGGATACAACT 57.768 39.130 12.07 0.00 39.74 3.16
2404 2589 5.675323 GCATCAGGTTTAAACGGGATACAAC 60.675 44.000 17.69 8.60 39.74 3.32
2405 2590 4.396790 GCATCAGGTTTAAACGGGATACAA 59.603 41.667 17.69 0.00 39.74 2.41
2406 2591 3.942748 GCATCAGGTTTAAACGGGATACA 59.057 43.478 17.69 0.00 39.74 2.29
2407 2592 3.314357 GGCATCAGGTTTAAACGGGATAC 59.686 47.826 17.69 13.97 0.00 2.24
2408 2593 3.201266 AGGCATCAGGTTTAAACGGGATA 59.799 43.478 17.69 2.72 0.00 2.59
2409 2594 2.025321 AGGCATCAGGTTTAAACGGGAT 60.025 45.455 12.07 13.33 0.00 3.85
2410 2595 1.353022 AGGCATCAGGTTTAAACGGGA 59.647 47.619 12.07 11.74 0.00 5.14
2411 2596 1.472480 CAGGCATCAGGTTTAAACGGG 59.528 52.381 12.07 6.86 0.00 5.28
2412 2597 2.420022 CTCAGGCATCAGGTTTAAACGG 59.580 50.000 12.07 7.20 0.00 4.44
2413 2598 2.420022 CCTCAGGCATCAGGTTTAAACG 59.580 50.000 12.07 0.00 0.00 3.60
2414 2599 2.755103 CCCTCAGGCATCAGGTTTAAAC 59.245 50.000 9.98 9.98 0.00 2.01
2415 2600 3.085952 CCCTCAGGCATCAGGTTTAAA 57.914 47.619 0.00 0.00 0.00 1.52
2416 2601 2.806945 CCCTCAGGCATCAGGTTTAA 57.193 50.000 0.00 0.00 0.00 1.52
2436 2621 9.940166 ACGTCCGGCTTTAAATTAATAATAAAG 57.060 29.630 19.66 19.66 38.86 1.85
2439 2624 9.934190 GAAACGTCCGGCTTTAAATTAATAATA 57.066 29.630 0.00 0.00 0.00 0.98
2440 2625 8.680001 AGAAACGTCCGGCTTTAAATTAATAAT 58.320 29.630 0.00 0.00 0.00 1.28
2441 2626 8.042944 AGAAACGTCCGGCTTTAAATTAATAA 57.957 30.769 0.00 0.00 0.00 1.40
2442 2627 7.614124 AGAAACGTCCGGCTTTAAATTAATA 57.386 32.000 0.00 0.00 0.00 0.98
2443 2628 6.505044 AGAAACGTCCGGCTTTAAATTAAT 57.495 33.333 0.00 0.00 0.00 1.40
2444 2629 5.945466 AGAAACGTCCGGCTTTAAATTAA 57.055 34.783 0.00 0.00 0.00 1.40
2445 2630 5.063817 GCTAGAAACGTCCGGCTTTAAATTA 59.936 40.000 0.00 0.00 0.00 1.40
2446 2631 4.142752 GCTAGAAACGTCCGGCTTTAAATT 60.143 41.667 0.00 0.00 0.00 1.82
2447 2632 3.373130 GCTAGAAACGTCCGGCTTTAAAT 59.627 43.478 0.00 0.00 0.00 1.40
2448 2633 2.738314 GCTAGAAACGTCCGGCTTTAAA 59.262 45.455 0.00 0.00 0.00 1.52
2449 2634 2.340337 GCTAGAAACGTCCGGCTTTAA 58.660 47.619 0.00 0.00 0.00 1.52
2450 2635 1.733389 CGCTAGAAACGTCCGGCTTTA 60.733 52.381 0.00 0.00 0.00 1.85
2451 2636 1.012486 CGCTAGAAACGTCCGGCTTT 61.012 55.000 0.00 0.00 0.00 3.51
2452 2637 1.445582 CGCTAGAAACGTCCGGCTT 60.446 57.895 0.00 0.00 0.00 4.35
2453 2638 2.181021 CGCTAGAAACGTCCGGCT 59.819 61.111 0.00 0.00 0.00 5.52
2454 2639 2.126189 ACGCTAGAAACGTCCGGC 60.126 61.111 0.00 0.00 40.28 6.13
2482 2667 1.608590 CGGTGCAGAGGACATGTTTTT 59.391 47.619 0.00 0.00 0.00 1.94
2483 2668 1.238439 CGGTGCAGAGGACATGTTTT 58.762 50.000 0.00 0.00 0.00 2.43
2484 2669 0.606401 CCGGTGCAGAGGACATGTTT 60.606 55.000 0.00 0.00 0.00 2.83
2549 2734 4.214119 CGGGCCAATACAATAAGATCAGTG 59.786 45.833 4.39 0.00 0.00 3.66
2553 2738 4.387862 CGTACGGGCCAATACAATAAGATC 59.612 45.833 7.57 0.00 0.00 2.75
2605 2797 1.094785 ACCATTGATTTTCTCCCGCG 58.905 50.000 0.00 0.00 0.00 6.46
2608 2800 2.760650 GTCCCACCATTGATTTTCTCCC 59.239 50.000 0.00 0.00 0.00 4.30
2622 2814 1.746517 CTACCATAGCCGTCCCACC 59.253 63.158 0.00 0.00 0.00 4.61
2630 2822 5.134749 GCTAAAGCAACGCTACCATAGCC 62.135 52.174 2.34 0.00 44.04 3.93
2632 2824 2.218759 CGCTAAAGCAACGCTACCATAG 59.781 50.000 2.44 0.00 38.25 2.23
2633 2825 2.198406 CGCTAAAGCAACGCTACCATA 58.802 47.619 2.44 0.00 38.25 2.74
2634 2826 1.006832 CGCTAAAGCAACGCTACCAT 58.993 50.000 2.44 0.00 38.25 3.55
2635 2827 2.451693 CGCTAAAGCAACGCTACCA 58.548 52.632 2.44 0.00 38.25 3.25
2744 2944 9.696572 TCTCGGGCATTATTACTAGTTCTATAT 57.303 33.333 0.00 0.00 0.00 0.86
2745 2945 9.524496 TTCTCGGGCATTATTACTAGTTCTATA 57.476 33.333 0.00 0.00 0.00 1.31
2747 2947 7.828508 TTCTCGGGCATTATTACTAGTTCTA 57.171 36.000 0.00 0.00 0.00 2.10
2748 2948 6.726490 TTCTCGGGCATTATTACTAGTTCT 57.274 37.500 0.00 0.00 0.00 3.01
2749 2949 7.781548 TTTTCTCGGGCATTATTACTAGTTC 57.218 36.000 0.00 0.00 0.00 3.01
2773 2973 9.640596 GACACAAAGTCGACCTTTTTCAGGTTT 62.641 40.741 13.01 0.00 46.65 3.27
2774 2974 8.274259 GACACAAAGTCGACCTTTTTCAGGTT 62.274 42.308 13.01 0.00 46.65 3.50
2776 2976 4.495844 GACACAAAGTCGACCTTTTTCAGG 60.496 45.833 13.01 3.22 41.51 3.86
2777 2977 4.588278 GACACAAAGTCGACCTTTTTCAG 58.412 43.478 13.01 4.05 41.51 3.02
2778 2978 4.609691 GACACAAAGTCGACCTTTTTCA 57.390 40.909 13.01 0.00 41.51 2.69
2789 2989 0.316196 GTGCTGCACGACACAAAGTC 60.316 55.000 17.93 0.00 44.02 3.01
2790 2990 0.744414 AGTGCTGCACGACACAAAGT 60.744 50.000 25.39 3.37 39.64 2.66
2791 2991 0.378257 AAGTGCTGCACGACACAAAG 59.622 50.000 25.39 0.00 39.64 2.77
2792 2992 0.098552 CAAGTGCTGCACGACACAAA 59.901 50.000 25.39 0.00 39.64 2.83
2793 2993 0.742635 TCAAGTGCTGCACGACACAA 60.743 50.000 25.39 7.97 39.64 3.33
2794 2994 0.742635 TTCAAGTGCTGCACGACACA 60.743 50.000 25.39 8.63 39.64 3.72
2795 2995 0.588252 ATTCAAGTGCTGCACGACAC 59.412 50.000 25.39 3.00 39.64 3.67
2796 2996 1.002576 CAATTCAAGTGCTGCACGACA 60.003 47.619 25.39 12.42 39.64 4.35
2797 2997 1.264020 TCAATTCAAGTGCTGCACGAC 59.736 47.619 25.39 3.79 39.64 4.34
2798 2998 1.592064 TCAATTCAAGTGCTGCACGA 58.408 45.000 25.39 15.65 39.64 4.35
2799 2999 2.046313 GTTCAATTCAAGTGCTGCACG 58.954 47.619 25.39 13.57 39.64 5.34
2800 3000 2.046313 CGTTCAATTCAAGTGCTGCAC 58.954 47.619 24.59 24.59 34.10 4.57
2801 3001 1.001487 CCGTTCAATTCAAGTGCTGCA 60.001 47.619 0.00 0.00 0.00 4.41
2802 3002 1.666888 CCCGTTCAATTCAAGTGCTGC 60.667 52.381 0.00 0.00 0.00 5.25
2803 3003 1.666888 GCCCGTTCAATTCAAGTGCTG 60.667 52.381 0.00 0.00 0.00 4.41
2804 3004 0.598065 GCCCGTTCAATTCAAGTGCT 59.402 50.000 0.00 0.00 0.00 4.40
2805 3005 0.598065 AGCCCGTTCAATTCAAGTGC 59.402 50.000 0.00 0.00 0.00 4.40
2806 3006 3.369546 AAAGCCCGTTCAATTCAAGTG 57.630 42.857 0.00 0.00 0.00 3.16
2807 3007 4.082245 CCATAAAGCCCGTTCAATTCAAGT 60.082 41.667 0.00 0.00 0.00 3.16
2808 3008 4.082245 ACCATAAAGCCCGTTCAATTCAAG 60.082 41.667 0.00 0.00 0.00 3.02
2809 3009 3.829601 ACCATAAAGCCCGTTCAATTCAA 59.170 39.130 0.00 0.00 0.00 2.69
2810 3010 3.426615 ACCATAAAGCCCGTTCAATTCA 58.573 40.909 0.00 0.00 0.00 2.57
2811 3011 3.442273 TGACCATAAAGCCCGTTCAATTC 59.558 43.478 0.00 0.00 0.00 2.17
2812 3012 3.192633 GTGACCATAAAGCCCGTTCAATT 59.807 43.478 0.00 0.00 0.00 2.32
2813 3013 2.752903 GTGACCATAAAGCCCGTTCAAT 59.247 45.455 0.00 0.00 0.00 2.57
2817 3017 1.303091 GCGTGACCATAAAGCCCGTT 61.303 55.000 0.00 0.00 0.00 4.44
2829 3029 2.474526 CGTTCAAAGATCATGCGTGACC 60.475 50.000 11.65 0.00 37.14 4.02
2833 3033 4.083324 ACAAATCGTTCAAAGATCATGCGT 60.083 37.500 0.00 0.00 0.00 5.24
2834 3034 4.406069 ACAAATCGTTCAAAGATCATGCG 58.594 39.130 0.00 0.00 0.00 4.73
2835 3035 6.634436 GGATACAAATCGTTCAAAGATCATGC 59.366 38.462 0.00 0.00 32.44 4.06
2849 3052 2.949644 GGAACTTGGGGGATACAAATCG 59.050 50.000 0.00 0.00 39.74 3.34
2850 3053 3.296854 GGGAACTTGGGGGATACAAATC 58.703 50.000 0.00 0.00 39.74 2.17
2851 3054 2.657459 TGGGAACTTGGGGGATACAAAT 59.343 45.455 0.00 0.00 39.74 2.32
2852 3055 2.074579 TGGGAACTTGGGGGATACAAA 58.925 47.619 0.00 0.00 39.74 2.83
2855 3058 1.639108 AGTTGGGAACTTGGGGGATAC 59.361 52.381 0.00 0.00 39.04 2.24
2856 3059 1.920351 GAGTTGGGAACTTGGGGGATA 59.080 52.381 0.00 0.00 43.03 2.59
2857 3060 0.704664 GAGTTGGGAACTTGGGGGAT 59.295 55.000 0.00 0.00 43.03 3.85
2861 3064 0.038310 GGAGGAGTTGGGAACTTGGG 59.962 60.000 0.00 0.00 43.03 4.12
2862 3065 1.068121 AGGAGGAGTTGGGAACTTGG 58.932 55.000 0.00 0.00 43.03 3.61
2864 3067 2.118403 TCAGGAGGAGTTGGGAACTT 57.882 50.000 0.00 0.00 43.03 2.66
2866 3069 2.305927 TGATTCAGGAGGAGTTGGGAAC 59.694 50.000 0.00 0.00 0.00 3.62
2867 3070 2.631384 TGATTCAGGAGGAGTTGGGAA 58.369 47.619 0.00 0.00 0.00 3.97
2871 3095 4.768968 ACCAAAATGATTCAGGAGGAGTTG 59.231 41.667 3.28 0.00 0.00 3.16
2876 3100 6.647895 CAGAAAAACCAAAATGATTCAGGAGG 59.352 38.462 3.28 0.00 0.00 4.30
2877 3101 7.436118 TCAGAAAAACCAAAATGATTCAGGAG 58.564 34.615 3.28 0.00 0.00 3.69
2878 3102 7.358770 TCAGAAAAACCAAAATGATTCAGGA 57.641 32.000 3.28 0.00 0.00 3.86
2879 3103 7.306749 CGTTCAGAAAAACCAAAATGATTCAGG 60.307 37.037 0.00 0.00 0.00 3.86
2900 3124 2.254546 AACAACTCCTGATGCGTTCA 57.745 45.000 0.00 0.00 0.00 3.18
2901 3125 3.626028 AAAACAACTCCTGATGCGTTC 57.374 42.857 0.00 0.00 0.00 3.95
2919 3143 6.152661 TGGCTTGTTCAGAGAAAAGAGAAAAA 59.847 34.615 0.00 0.00 0.00 1.94
2920 3144 5.652014 TGGCTTGTTCAGAGAAAAGAGAAAA 59.348 36.000 0.00 0.00 0.00 2.29
2921 3145 5.192927 TGGCTTGTTCAGAGAAAAGAGAAA 58.807 37.500 0.00 0.00 0.00 2.52
2922 3146 4.780815 TGGCTTGTTCAGAGAAAAGAGAA 58.219 39.130 0.00 0.00 0.00 2.87
2923 3147 4.422073 TGGCTTGTTCAGAGAAAAGAGA 57.578 40.909 0.00 0.00 0.00 3.10
2924 3148 4.758674 TGATGGCTTGTTCAGAGAAAAGAG 59.241 41.667 0.00 0.00 0.00 2.85
2925 3149 4.717877 TGATGGCTTGTTCAGAGAAAAGA 58.282 39.130 0.00 0.00 0.00 2.52
2931 3155 2.027377 ACTCCTGATGGCTTGTTCAGAG 60.027 50.000 1.63 0.00 41.53 3.35
2936 3160 2.553904 CCAGAACTCCTGATGGCTTGTT 60.554 50.000 0.00 0.00 45.78 2.83
2939 3163 1.661463 TCCAGAACTCCTGATGGCTT 58.339 50.000 0.00 0.00 45.78 4.35
2948 3172 3.166679 ACCACTAGTCTTCCAGAACTCC 58.833 50.000 0.00 0.00 0.00 3.85
2953 3177 4.087182 CCACTTACCACTAGTCTTCCAGA 58.913 47.826 0.00 0.00 0.00 3.86
2958 3182 4.220163 GCTACACCACTTACCACTAGTCTT 59.780 45.833 0.00 0.00 0.00 3.01
2966 3190 3.134985 TGTTTCTGCTACACCACTTACCA 59.865 43.478 0.00 0.00 0.00 3.25
2968 3192 4.211374 CACTGTTTCTGCTACACCACTTAC 59.789 45.833 0.00 0.00 0.00 2.34
2969 3193 4.100344 TCACTGTTTCTGCTACACCACTTA 59.900 41.667 0.00 0.00 0.00 2.24
2970 3194 3.118408 TCACTGTTTCTGCTACACCACTT 60.118 43.478 0.00 0.00 0.00 3.16
2973 3197 2.484770 GGTCACTGTTTCTGCTACACCA 60.485 50.000 0.00 0.00 0.00 4.17
2974 3198 2.143925 GGTCACTGTTTCTGCTACACC 58.856 52.381 0.00 0.00 0.00 4.16
2976 3200 1.684450 TCGGTCACTGTTTCTGCTACA 59.316 47.619 0.00 0.00 0.00 2.74
2980 3204 0.798776 CCATCGGTCACTGTTTCTGC 59.201 55.000 0.00 0.00 0.00 4.26
2989 3213 1.804748 GTCTTCAAACCCATCGGTCAC 59.195 52.381 0.00 0.00 43.71 3.67
2993 3217 2.744202 CTCTTGTCTTCAAACCCATCGG 59.256 50.000 0.00 0.00 32.87 4.18
2995 3219 2.489722 GCCTCTTGTCTTCAAACCCATC 59.510 50.000 0.00 0.00 32.87 3.51
2998 3222 1.248486 GGCCTCTTGTCTTCAAACCC 58.752 55.000 0.00 0.00 32.87 4.11
3019 3252 6.372937 GTGGTCAAATCAAAGGGAAAACAAAA 59.627 34.615 0.00 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.