Multiple sequence alignment - TraesCS6A01G320700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G320700 chr6A 100.000 3425 0 0 1 3425 555425377 555428801 0.000000e+00 6325.0
1 TraesCS6A01G320700 chr6A 89.441 161 16 1 2666 2826 590963613 590963772 5.800000e-48 202.0
2 TraesCS6A01G320700 chr6A 96.000 50 2 0 1 50 2931108 2931059 7.880000e-12 82.4
3 TraesCS6A01G320700 chr6A 96.000 50 2 0 1 50 401682098 401682147 7.880000e-12 82.4
4 TraesCS6A01G320700 chr6A 96.000 50 2 0 1 50 596337882 596337931 7.880000e-12 82.4
5 TraesCS6A01G320700 chr6A 95.918 49 2 0 1 49 6705345 6705393 2.830000e-11 80.5
6 TraesCS6A01G320700 chr6D 91.249 1097 60 16 1622 2682 410152946 410154042 0.000000e+00 1461.0
7 TraesCS6A01G320700 chr6D 87.870 1080 70 23 504 1567 410151781 410152815 0.000000e+00 1212.0
8 TraesCS6A01G320700 chr6D 93.871 669 33 6 2763 3425 410155458 410156124 0.000000e+00 1002.0
9 TraesCS6A01G320700 chr6D 93.377 453 23 6 2974 3423 410154970 410155418 0.000000e+00 664.0
10 TraesCS6A01G320700 chr6D 90.000 160 16 0 2666 2825 255024553 255024712 1.250000e-49 207.0
11 TraesCS6A01G320700 chr6B 91.800 1000 62 9 1640 2620 617038709 617039707 0.000000e+00 1375.0
12 TraesCS6A01G320700 chr6B 89.091 1100 64 24 486 1556 617037532 617038604 0.000000e+00 1315.0
13 TraesCS6A01G320700 chr6B 83.742 652 44 32 2776 3422 617041381 617041975 8.300000e-156 560.0
14 TraesCS6A01G320700 chr6B 88.596 342 31 6 50 384 617036993 617037333 3.180000e-110 409.0
15 TraesCS6A01G320700 chr6B 93.878 49 3 0 362 410 616456494 616456446 1.320000e-09 75.0
16 TraesCS6A01G320700 chr5D 83.533 917 92 22 1729 2588 563751215 563752129 0.000000e+00 802.0
17 TraesCS6A01G320700 chr5D 79.587 823 115 25 1690 2474 341035100 341035907 1.080000e-149 540.0
18 TraesCS6A01G320700 chr5D 81.964 560 71 17 999 1531 341037190 341037746 6.740000e-122 448.0
19 TraesCS6A01G320700 chr5D 86.842 228 15 7 995 1210 563750284 563750508 1.230000e-59 241.0
20 TraesCS6A01G320700 chr4A 82.443 917 97 26 1733 2588 608837511 608836598 0.000000e+00 743.0
21 TraesCS6A01G320700 chr4A 86.212 631 78 8 1797 2426 743111754 743112376 0.000000e+00 675.0
22 TraesCS6A01G320700 chr4A 83.273 550 61 11 998 1537 743111155 743111683 8.600000e-131 477.0
23 TraesCS6A01G320700 chr4A 86.547 223 15 5 998 1208 608838383 608838164 7.390000e-57 231.0
24 TraesCS6A01G320700 chr4A 82.008 239 41 2 2205 2442 738740778 738741015 5.800000e-48 202.0
25 TraesCS6A01G320700 chr4A 96.000 50 2 0 1 50 584469965 584470014 7.880000e-12 82.4
26 TraesCS6A01G320700 chr7D 84.627 657 74 14 1797 2426 1184100 1184756 2.240000e-176 628.0
27 TraesCS6A01G320700 chr7D 86.286 350 34 8 2776 3117 617060739 617060396 5.400000e-98 368.0
28 TraesCS6A01G320700 chr7D 85.511 352 38 5 2763 3107 43219081 43218736 4.200000e-94 355.0
29 TraesCS6A01G320700 chr7D 97.143 35 0 1 1605 1638 167359567 167359601 1.330000e-04 58.4
30 TraesCS6A01G320700 chr5B 79.828 813 115 25 1690 2468 400450369 400451166 6.460000e-152 547.0
31 TraesCS6A01G320700 chr5B 77.416 921 143 37 1642 2514 400518316 400519219 3.970000e-134 488.0
32 TraesCS6A01G320700 chr5B 77.358 848 131 35 1704 2514 400522762 400523585 2.420000e-121 446.0
33 TraesCS6A01G320700 chr5B 81.788 302 44 5 1254 1551 400517754 400518048 3.410000e-60 243.0
34 TraesCS6A01G320700 chr5B 86.239 218 24 3 999 1210 400521811 400522028 7.390000e-57 231.0
35 TraesCS6A01G320700 chr5B 80.399 301 49 4 1254 1551 400467137 400467430 1.600000e-53 220.0
36 TraesCS6A01G320700 chr7A 89.873 395 39 1 1797 2191 1181576 1181969 1.100000e-139 507.0
37 TraesCS6A01G320700 chr7A 85.217 460 55 4 1097 1549 1181068 1181521 8.660000e-126 460.0
38 TraesCS6A01G320700 chr7A 88.000 350 31 7 2776 3117 19078161 19077815 1.480000e-108 403.0
39 TraesCS6A01G320700 chr7A 90.000 160 14 1 2666 2825 700429549 700429392 4.480000e-49 206.0
40 TraesCS6A01G320700 chr7A 89.222 167 15 3 2661 2826 730872773 730872609 4.480000e-49 206.0
41 TraesCS6A01G320700 chr7A 89.506 162 15 1 2664 2825 131127513 131127354 1.610000e-48 204.0
42 TraesCS6A01G320700 chr7A 89.937 159 14 1 2667 2825 498486816 498486972 1.610000e-48 204.0
43 TraesCS6A01G320700 chr7A 97.143 35 0 1 1605 1638 168872296 168872330 1.330000e-04 58.4
44 TraesCS6A01G320700 chr4D 83.478 460 55 14 2666 3117 486545029 486544583 3.180000e-110 409.0
45 TraesCS6A01G320700 chr1A 88.081 344 30 5 2776 3111 150863395 150863735 6.890000e-107 398.0
46 TraesCS6A01G320700 chr1A 90.062 161 14 1 2665 2825 481273984 481274142 1.250000e-49 207.0
47 TraesCS6A01G320700 chrUn 81.497 481 51 10 1089 1550 51489946 51489485 9.040000e-96 361.0
48 TraesCS6A01G320700 chrUn 85.014 367 37 8 2765 3119 75326373 75326733 1.170000e-94 357.0
49 TraesCS6A01G320700 chrUn 95.918 49 2 0 1 49 282062025 282062073 2.830000e-11 80.5
50 TraesCS6A01G320700 chrUn 95.918 49 2 0 1 49 473023012 473023060 2.830000e-11 80.5
51 TraesCS6A01G320700 chr5A 85.429 350 40 6 2776 3117 651552735 651553081 1.510000e-93 353.0
52 TraesCS6A01G320700 chr5A 90.000 160 14 1 2666 2825 626074036 626074193 4.480000e-49 206.0
53 TraesCS6A01G320700 chr5A 96.000 50 2 0 1 50 548655310 548655261 7.880000e-12 82.4
54 TraesCS6A01G320700 chr2A 96.000 50 2 0 1 50 583256987 583257036 7.880000e-12 82.4
55 TraesCS6A01G320700 chr2A 97.059 34 1 0 1605 1638 115749874 115749841 1.330000e-04 58.4
56 TraesCS6A01G320700 chr2B 87.879 66 8 0 820 885 13014487 13014422 1.020000e-10 78.7
57 TraesCS6A01G320700 chr3B 95.000 40 1 1 1605 1643 738379742 738379781 1.030000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G320700 chr6A 555425377 555428801 3424 False 6325.00 6325 100.00000 1 3425 1 chr6A.!!$F3 3424
1 TraesCS6A01G320700 chr6D 410151781 410156124 4343 False 1084.75 1461 91.59175 504 3425 4 chr6D.!!$F2 2921
2 TraesCS6A01G320700 chr6B 617036993 617041975 4982 False 914.75 1375 88.30725 50 3422 4 chr6B.!!$F1 3372
3 TraesCS6A01G320700 chr5D 563750284 563752129 1845 False 521.50 802 85.18750 995 2588 2 chr5D.!!$F2 1593
4 TraesCS6A01G320700 chr5D 341035100 341037746 2646 False 494.00 540 80.77550 999 2474 2 chr5D.!!$F1 1475
5 TraesCS6A01G320700 chr4A 743111155 743112376 1221 False 576.00 675 84.74250 998 2426 2 chr4A.!!$F3 1428
6 TraesCS6A01G320700 chr4A 608836598 608838383 1785 True 487.00 743 84.49500 998 2588 2 chr4A.!!$R1 1590
7 TraesCS6A01G320700 chr7D 1184100 1184756 656 False 628.00 628 84.62700 1797 2426 1 chr7D.!!$F1 629
8 TraesCS6A01G320700 chr5B 400450369 400451166 797 False 547.00 547 79.82800 1690 2468 1 chr5B.!!$F1 778
9 TraesCS6A01G320700 chr5B 400517754 400523585 5831 False 352.00 488 80.70025 999 2514 4 chr5B.!!$F3 1515
10 TraesCS6A01G320700 chr7A 1181068 1181969 901 False 483.50 507 87.54500 1097 2191 2 chr7A.!!$F3 1094

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
859 1008 0.039256 CACGTTGGCACCCAAGATTG 60.039 55.0 0.0 0.0 44.82 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2813 9768 0.112995 AGGTGGCCTTTTCTCATGCA 59.887 50.0 3.32 0.0 0.0 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.167414 CCCCCTTGGTCTTTCGGT 58.833 61.111 0.00 0.00 0.00 4.69
29 30 1.002502 CCCCCTTGGTCTTTCGGTC 60.003 63.158 0.00 0.00 0.00 4.79
30 31 1.489560 CCCCCTTGGTCTTTCGGTCT 61.490 60.000 0.00 0.00 0.00 3.85
31 32 1.272807 CCCCTTGGTCTTTCGGTCTA 58.727 55.000 0.00 0.00 0.00 2.59
32 33 1.066358 CCCCTTGGTCTTTCGGTCTAC 60.066 57.143 0.00 0.00 0.00 2.59
33 34 1.621814 CCCTTGGTCTTTCGGTCTACA 59.378 52.381 0.00 0.00 0.00 2.74
34 35 2.353803 CCCTTGGTCTTTCGGTCTACAG 60.354 54.545 0.00 0.00 0.00 2.74
35 36 2.561419 CCTTGGTCTTTCGGTCTACAGA 59.439 50.000 0.00 0.00 0.00 3.41
37 38 3.868757 TGGTCTTTCGGTCTACAGATG 57.131 47.619 0.00 0.00 0.00 2.90
40 41 5.198207 TGGTCTTTCGGTCTACAGATGATA 58.802 41.667 0.00 0.00 0.00 2.15
41 42 5.067413 TGGTCTTTCGGTCTACAGATGATAC 59.933 44.000 0.00 0.00 0.00 2.24
42 43 5.507650 GGTCTTTCGGTCTACAGATGATACC 60.508 48.000 0.00 0.00 0.00 2.73
43 44 4.583489 TCTTTCGGTCTACAGATGATACCC 59.417 45.833 0.00 0.00 0.00 3.69
44 45 2.872732 TCGGTCTACAGATGATACCCC 58.127 52.381 0.00 0.00 0.00 4.95
45 46 2.445905 TCGGTCTACAGATGATACCCCT 59.554 50.000 0.00 0.00 0.00 4.79
46 47 3.117246 TCGGTCTACAGATGATACCCCTT 60.117 47.826 0.00 0.00 0.00 3.95
47 48 3.641906 CGGTCTACAGATGATACCCCTTT 59.358 47.826 0.00 0.00 0.00 3.11
50 51 5.104485 GGTCTACAGATGATACCCCTTTTGT 60.104 44.000 0.00 0.00 0.00 2.83
51 52 5.817816 GTCTACAGATGATACCCCTTTTGTG 59.182 44.000 0.00 0.00 0.00 3.33
52 53 4.657814 ACAGATGATACCCCTTTTGTGT 57.342 40.909 0.00 0.00 0.00 3.72
53 54 4.335416 ACAGATGATACCCCTTTTGTGTG 58.665 43.478 0.00 0.00 0.00 3.82
54 55 4.042809 ACAGATGATACCCCTTTTGTGTGA 59.957 41.667 0.00 0.00 0.00 3.58
112 114 2.754552 CGATTTTGGCTCTGGAATTCCA 59.245 45.455 25.53 25.53 45.30 3.53
129 131 0.534412 CCAGCACCACCACAAAACAA 59.466 50.000 0.00 0.00 0.00 2.83
154 156 2.042686 ATGCAAGACATGTATGCGGT 57.957 45.000 23.47 15.52 42.91 5.68
200 206 8.548025 TGGACATACTTGAAGAGAATCCAATTA 58.452 33.333 0.00 0.00 33.66 1.40
267 274 7.202016 TGAGTGGTAAACATTGACAGAATTC 57.798 36.000 0.00 0.00 0.00 2.17
301 308 2.416431 GGTCAGGCATTGCATTCTGAAC 60.416 50.000 14.94 14.14 37.90 3.18
317 324 7.587629 CATTCTGAACTTGTGAATTTCAGCTA 58.412 34.615 0.00 3.87 43.73 3.32
354 362 2.489285 GCATCCGCGCCATTGAAA 59.511 55.556 0.00 0.00 0.00 2.69
363 371 1.343506 CGCCATTGAAAAAGCTCTGC 58.656 50.000 0.00 0.00 0.00 4.26
364 372 1.718396 GCCATTGAAAAAGCTCTGCC 58.282 50.000 0.00 0.00 0.00 4.85
369 377 3.996150 TTGAAAAAGCTCTGCCTGAAG 57.004 42.857 0.00 0.00 0.00 3.02
394 409 4.402155 ACAAGCAACCTGTTCATCTGAAAA 59.598 37.500 0.00 0.00 35.58 2.29
396 411 4.936891 AGCAACCTGTTCATCTGAAAAAC 58.063 39.130 0.00 0.15 35.58 2.43
397 412 4.402155 AGCAACCTGTTCATCTGAAAAACA 59.598 37.500 7.65 7.65 35.58 2.83
398 413 5.105392 AGCAACCTGTTCATCTGAAAAACAA 60.105 36.000 8.82 0.00 35.58 2.83
399 414 5.232838 GCAACCTGTTCATCTGAAAAACAAG 59.767 40.000 8.82 6.27 35.58 3.16
400 415 5.520376 ACCTGTTCATCTGAAAAACAAGG 57.480 39.130 8.82 12.31 35.58 3.61
401 416 5.200483 ACCTGTTCATCTGAAAAACAAGGA 58.800 37.500 19.00 0.00 35.58 3.36
404 419 4.644234 TGTTCATCTGAAAAACAAGGAGCA 59.356 37.500 5.93 0.00 35.58 4.26
405 420 5.302568 TGTTCATCTGAAAAACAAGGAGCAT 59.697 36.000 5.93 0.00 35.58 3.79
406 421 5.633830 TCATCTGAAAAACAAGGAGCATC 57.366 39.130 0.00 0.00 0.00 3.91
407 422 7.063158 GTTCATCTGAAAAACAAGGAGCATCC 61.063 42.308 0.00 0.00 46.11 3.51
418 433 3.450028 GAGCATCCTCGACAAAGCT 57.550 52.632 0.00 0.00 34.61 3.74
423 438 2.275318 CATCCTCGACAAAGCTCCTTC 58.725 52.381 0.00 0.00 0.00 3.46
424 439 1.338107 TCCTCGACAAAGCTCCTTCA 58.662 50.000 0.00 0.00 0.00 3.02
425 440 1.691976 TCCTCGACAAAGCTCCTTCAA 59.308 47.619 0.00 0.00 0.00 2.69
426 441 2.303022 TCCTCGACAAAGCTCCTTCAAT 59.697 45.455 0.00 0.00 0.00 2.57
430 445 6.049149 CCTCGACAAAGCTCCTTCAATATAA 58.951 40.000 0.00 0.00 0.00 0.98
431 446 6.018669 CCTCGACAAAGCTCCTTCAATATAAC 60.019 42.308 0.00 0.00 0.00 1.89
432 447 5.815740 TCGACAAAGCTCCTTCAATATAACC 59.184 40.000 0.00 0.00 0.00 2.85
433 448 5.276868 CGACAAAGCTCCTTCAATATAACCG 60.277 44.000 0.00 0.00 0.00 4.44
434 449 4.881850 ACAAAGCTCCTTCAATATAACCGG 59.118 41.667 0.00 0.00 0.00 5.28
435 450 3.771577 AGCTCCTTCAATATAACCGGG 57.228 47.619 6.32 0.00 0.00 5.73
438 453 3.665190 CTCCTTCAATATAACCGGGCTC 58.335 50.000 6.32 0.00 0.00 4.70
439 454 3.314693 TCCTTCAATATAACCGGGCTCT 58.685 45.455 6.32 0.00 0.00 4.09
440 455 3.071023 TCCTTCAATATAACCGGGCTCTG 59.929 47.826 6.32 0.00 0.00 3.35
441 456 3.403038 CTTCAATATAACCGGGCTCTGG 58.597 50.000 6.32 0.00 0.00 3.86
442 457 1.071699 TCAATATAACCGGGCTCTGGC 59.928 52.381 6.32 0.00 37.82 4.85
459 474 5.240844 GCTCTGGCCTACTTTCTAAAACAAA 59.759 40.000 3.32 0.00 0.00 2.83
462 477 4.023536 TGGCCTACTTTCTAAAACAAAGCG 60.024 41.667 3.32 0.00 34.67 4.68
466 481 6.134061 CCTACTTTCTAAAACAAAGCGTCAC 58.866 40.000 0.00 0.00 34.67 3.67
467 482 5.554822 ACTTTCTAAAACAAAGCGTCACA 57.445 34.783 0.00 0.00 34.67 3.58
469 484 3.602390 TCTAAAACAAAGCGTCACAGC 57.398 42.857 0.00 0.00 37.41 4.40
474 489 1.160329 ACAAAGCGTCACAGCACCTC 61.160 55.000 0.00 0.00 40.15 3.85
476 491 0.463654 AAAGCGTCACAGCACCTCAA 60.464 50.000 0.00 0.00 40.15 3.02
477 492 0.882042 AAGCGTCACAGCACCTCAAG 60.882 55.000 0.00 0.00 40.15 3.02
478 493 1.300931 GCGTCACAGCACCTCAAGA 60.301 57.895 0.00 0.00 37.05 3.02
480 495 1.800805 CGTCACAGCACCTCAAGAAT 58.199 50.000 0.00 0.00 0.00 2.40
481 496 1.728971 CGTCACAGCACCTCAAGAATC 59.271 52.381 0.00 0.00 0.00 2.52
483 498 2.999355 GTCACAGCACCTCAAGAATCTC 59.001 50.000 0.00 0.00 0.00 2.75
519 624 0.394899 GGATTCCTTGAGGTGCCTGG 60.395 60.000 0.00 0.00 36.34 4.45
555 660 4.378774 CACAATGAAACTGAATGGGCAAA 58.621 39.130 0.00 0.00 0.00 3.68
564 669 3.950395 ACTGAATGGGCAAATCTTAGCTC 59.050 43.478 0.00 0.00 0.00 4.09
565 670 4.205587 CTGAATGGGCAAATCTTAGCTCT 58.794 43.478 0.00 0.00 30.90 4.09
573 678 3.064545 GCAAATCTTAGCTCTGTCGCAAT 59.935 43.478 0.00 0.00 0.00 3.56
576 681 2.103373 TCTTAGCTCTGTCGCAATCCT 58.897 47.619 0.00 0.00 0.00 3.24
580 685 1.135915 AGCTCTGTCGCAATCCTACTG 59.864 52.381 0.00 0.00 0.00 2.74
581 686 1.804372 GCTCTGTCGCAATCCTACTGG 60.804 57.143 0.00 0.00 0.00 4.00
583 688 1.476891 TCTGTCGCAATCCTACTGGAC 59.523 52.381 0.00 0.00 46.51 4.02
585 690 1.204704 TGTCGCAATCCTACTGGACTG 59.795 52.381 0.00 0.00 46.51 3.51
586 691 0.824109 TCGCAATCCTACTGGACTGG 59.176 55.000 0.00 0.00 46.51 4.00
587 692 0.824109 CGCAATCCTACTGGACTGGA 59.176 55.000 0.00 0.00 46.51 3.86
588 693 1.207089 CGCAATCCTACTGGACTGGAA 59.793 52.381 0.00 0.00 46.51 3.53
589 694 2.633488 GCAATCCTACTGGACTGGAAC 58.367 52.381 0.00 0.00 46.51 3.62
590 695 2.237392 GCAATCCTACTGGACTGGAACT 59.763 50.000 0.00 0.00 46.51 3.01
596 701 2.103153 ACTGGACTGGAACTCTGGAA 57.897 50.000 0.00 0.00 0.00 3.53
605 723 6.495181 GGACTGGAACTCTGGAAGATGATATA 59.505 42.308 0.00 0.00 45.62 0.86
645 763 0.617413 AGAAGAGTGGCATGGAGTGG 59.383 55.000 0.00 0.00 0.00 4.00
737 859 7.860373 CGACAATTTTTACCTTCAACTTCATCA 59.140 33.333 0.00 0.00 0.00 3.07
738 860 9.185192 GACAATTTTTACCTTCAACTTCATCAG 57.815 33.333 0.00 0.00 0.00 2.90
739 861 8.695456 ACAATTTTTACCTTCAACTTCATCAGT 58.305 29.630 0.00 0.00 37.30 3.41
745 867 5.376625 ACCTTCAACTTCATCAGTAAGCAA 58.623 37.500 0.00 0.00 32.94 3.91
760 882 6.208007 TCAGTAAGCAAGCAGTAGTACTAACA 59.792 38.462 3.61 0.00 0.00 2.41
785 912 3.505293 ACACGTAGTACCCAAGAAGAGAC 59.495 47.826 0.00 0.00 41.61 3.36
786 913 3.504906 CACGTAGTACCCAAGAAGAGACA 59.495 47.826 0.00 0.00 41.61 3.41
787 914 3.505293 ACGTAGTACCCAAGAAGAGACAC 59.495 47.826 0.00 0.00 41.94 3.67
788 915 3.504906 CGTAGTACCCAAGAAGAGACACA 59.495 47.826 0.00 0.00 0.00 3.72
790 917 4.338379 AGTACCCAAGAAGAGACACAAC 57.662 45.455 0.00 0.00 0.00 3.32
791 918 3.967987 AGTACCCAAGAAGAGACACAACT 59.032 43.478 0.00 0.00 0.00 3.16
792 919 3.199880 ACCCAAGAAGAGACACAACTG 57.800 47.619 0.00 0.00 0.00 3.16
794 921 2.564771 CCAAGAAGAGACACAACTGCA 58.435 47.619 0.00 0.00 0.00 4.41
797 924 4.371786 CAAGAAGAGACACAACTGCACTA 58.628 43.478 0.00 0.00 0.00 2.74
798 925 4.250116 AGAAGAGACACAACTGCACTAG 57.750 45.455 0.00 0.00 0.00 2.57
800 927 4.827835 AGAAGAGACACAACTGCACTAGTA 59.172 41.667 0.00 0.00 39.18 1.82
802 929 4.145807 AGAGACACAACTGCACTAGTACT 58.854 43.478 0.00 0.00 39.18 2.73
803 930 4.585162 AGAGACACAACTGCACTAGTACTT 59.415 41.667 0.00 0.00 39.18 2.24
804 931 5.069251 AGAGACACAACTGCACTAGTACTTT 59.931 40.000 0.00 0.00 39.18 2.66
805 932 6.264744 AGAGACACAACTGCACTAGTACTTTA 59.735 38.462 0.00 0.00 39.18 1.85
859 1008 0.039256 CACGTTGGCACCCAAGATTG 60.039 55.000 0.00 0.00 44.82 2.67
885 1034 4.135153 CACTGCCGTCTCCCCTCG 62.135 72.222 0.00 0.00 0.00 4.63
896 1045 0.257616 CTCCCCTCGTCTCTCCTTCT 59.742 60.000 0.00 0.00 0.00 2.85
981 1133 2.499693 TGTCACAGTGACCAAGAACAGA 59.500 45.455 27.51 5.92 46.40 3.41
982 1134 3.126831 GTCACAGTGACCAAGAACAGAG 58.873 50.000 21.52 0.00 41.37 3.35
983 1135 2.103094 TCACAGTGACCAAGAACAGAGG 59.897 50.000 0.00 0.00 0.00 3.69
984 1136 1.202698 ACAGTGACCAAGAACAGAGGC 60.203 52.381 0.00 0.00 0.00 4.70
985 1137 1.071385 CAGTGACCAAGAACAGAGGCT 59.929 52.381 0.00 0.00 0.00 4.58
987 1139 2.300437 AGTGACCAAGAACAGAGGCTAC 59.700 50.000 0.00 0.00 0.00 3.58
988 1140 2.037251 GTGACCAAGAACAGAGGCTACA 59.963 50.000 0.00 0.00 0.00 2.74
989 1141 2.300152 TGACCAAGAACAGAGGCTACAG 59.700 50.000 0.00 0.00 0.00 2.74
1356 4734 4.498009 CCGTCTGAAGAAAAGCACAAATGT 60.498 41.667 0.00 0.00 0.00 2.71
1367 4745 3.221771 AGCACAAATGTAGCAACCTGAA 58.778 40.909 9.50 0.00 0.00 3.02
1373 4751 5.047802 ACAAATGTAGCAACCTGAAAGATGG 60.048 40.000 0.00 0.00 34.07 3.51
1379 4763 0.962356 AACCTGAAAGATGGCGGCAG 60.962 55.000 19.29 3.17 34.07 4.85
1556 4955 3.246758 ACCTACCCCCTTACCTTCATTCT 60.247 47.826 0.00 0.00 0.00 2.40
1580 5221 6.466812 TCTGTTGCTTCTCTTGATGATGTAA 58.533 36.000 0.00 0.00 0.00 2.41
1604 5251 3.963676 TTTTTGCTTGCGATGCACT 57.036 42.105 0.00 0.00 38.71 4.40
1605 5252 2.222007 TTTTTGCTTGCGATGCACTT 57.778 40.000 0.00 0.00 38.71 3.16
1606 5253 2.222007 TTTTGCTTGCGATGCACTTT 57.778 40.000 0.00 0.00 38.71 2.66
1607 5254 2.222007 TTTGCTTGCGATGCACTTTT 57.778 40.000 0.00 0.00 38.71 2.27
1608 5255 1.769733 TTGCTTGCGATGCACTTTTC 58.230 45.000 0.00 0.00 38.71 2.29
1609 5256 0.039256 TGCTTGCGATGCACTTTTCC 60.039 50.000 0.00 0.00 38.71 3.13
1610 5257 0.733909 GCTTGCGATGCACTTTTCCC 60.734 55.000 0.00 0.00 38.71 3.97
1611 5258 0.597568 CTTGCGATGCACTTTTCCCA 59.402 50.000 0.00 0.00 38.71 4.37
1612 5259 1.000385 CTTGCGATGCACTTTTCCCAA 60.000 47.619 0.00 0.00 38.71 4.12
1613 5260 0.313672 TGCGATGCACTTTTCCCAAC 59.686 50.000 0.00 0.00 31.71 3.77
1614 5261 0.729140 GCGATGCACTTTTCCCAACG 60.729 55.000 0.00 0.00 0.00 4.10
1615 5262 0.871722 CGATGCACTTTTCCCAACGA 59.128 50.000 0.00 0.00 0.00 3.85
1616 5263 1.399727 CGATGCACTTTTCCCAACGAC 60.400 52.381 0.00 0.00 0.00 4.34
1617 5264 1.606668 GATGCACTTTTCCCAACGACA 59.393 47.619 0.00 0.00 0.00 4.35
1618 5265 1.464734 TGCACTTTTCCCAACGACAA 58.535 45.000 0.00 0.00 0.00 3.18
1619 5266 1.403679 TGCACTTTTCCCAACGACAAG 59.596 47.619 0.00 0.00 34.89 3.16
1620 5267 1.404035 GCACTTTTCCCAACGACAAGT 59.596 47.619 0.00 0.00 41.25 3.16
1621 5268 2.614983 GCACTTTTCCCAACGACAAGTA 59.385 45.455 0.00 0.00 39.06 2.24
1622 5269 3.252458 GCACTTTTCCCAACGACAAGTAT 59.748 43.478 0.00 0.00 39.06 2.12
1623 5270 4.261447 GCACTTTTCCCAACGACAAGTATT 60.261 41.667 0.00 0.00 39.06 1.89
1624 5271 5.735070 GCACTTTTCCCAACGACAAGTATTT 60.735 40.000 0.00 0.00 39.06 1.40
1625 5272 5.912955 CACTTTTCCCAACGACAAGTATTTC 59.087 40.000 0.00 0.00 39.06 2.17
1626 5273 4.735662 TTTCCCAACGACAAGTATTTCG 57.264 40.909 0.00 0.00 41.14 3.46
1627 5274 2.690786 TCCCAACGACAAGTATTTCGG 58.309 47.619 0.00 0.00 39.63 4.30
1628 5275 2.037511 TCCCAACGACAAGTATTTCGGT 59.962 45.455 0.00 0.00 39.63 4.69
1629 5276 3.257873 TCCCAACGACAAGTATTTCGGTA 59.742 43.478 0.00 0.00 39.63 4.02
1630 5277 3.368843 CCCAACGACAAGTATTTCGGTAC 59.631 47.826 0.00 0.00 39.63 3.34
1631 5278 3.989167 CCAACGACAAGTATTTCGGTACA 59.011 43.478 0.00 0.00 39.63 2.90
1632 5279 4.090930 CCAACGACAAGTATTTCGGTACAG 59.909 45.833 0.00 0.00 39.63 2.74
1633 5280 4.771590 ACGACAAGTATTTCGGTACAGA 57.228 40.909 0.00 0.00 39.63 3.41
1634 5281 4.730657 ACGACAAGTATTTCGGTACAGAG 58.269 43.478 0.00 0.00 39.63 3.35
1635 5282 4.103357 CGACAAGTATTTCGGTACAGAGG 58.897 47.826 0.00 0.00 0.00 3.69
1636 5283 4.430908 GACAAGTATTTCGGTACAGAGGG 58.569 47.826 0.00 0.00 0.00 4.30
1637 5284 4.091549 ACAAGTATTTCGGTACAGAGGGA 58.908 43.478 0.00 0.00 0.00 4.20
1638 5285 4.715297 ACAAGTATTTCGGTACAGAGGGAT 59.285 41.667 0.00 0.00 0.00 3.85
1739 5464 6.533012 TCAGAGCGAATTCATAGAAACTGAAG 59.467 38.462 6.22 0.00 36.16 3.02
1823 5556 2.804697 TGTGCTACTTGAGTACGCAA 57.195 45.000 11.68 11.68 43.32 4.85
1846 5579 7.120432 GCAACAAGAACCAAGAGAATAAGAGAT 59.880 37.037 0.00 0.00 0.00 2.75
2098 5831 2.576191 TGTTCCAGCCAAGCCTTATACT 59.424 45.455 0.00 0.00 0.00 2.12
2164 5948 5.808403 GCACTTGCTCTCTTGAATAATCTG 58.192 41.667 0.00 0.00 38.21 2.90
2197 5993 8.531982 TCAGTGTACATATATCCTATTTCCTGC 58.468 37.037 0.00 0.00 0.00 4.85
2210 6034 7.453393 TCCTATTTCCTGCATCCTAATACAAG 58.547 38.462 0.00 0.00 0.00 3.16
2218 6046 8.439971 TCCTGCATCCTAATACAAGTATTTGAT 58.560 33.333 10.41 10.06 37.07 2.57
2330 6158 3.558931 TTATGTTGTGGATGGCGAGAT 57.441 42.857 0.00 0.00 0.00 2.75
2343 6171 2.729479 CGAGATGGTGCTGGAGCCT 61.729 63.158 0.00 0.00 41.18 4.58
2400 6228 5.470501 AGATATGGGAAATTCAAGGCCAAT 58.529 37.500 5.01 0.00 0.00 3.16
2426 6260 5.744666 TTCGGTTTTTCTTTCGACTGAAT 57.255 34.783 0.00 0.00 33.70 2.57
2427 6261 5.090652 TCGGTTTTTCTTTCGACTGAATG 57.909 39.130 0.00 0.00 33.20 2.67
2478 6312 6.126409 AGACCCTGAAAATACAAGTTCAACA 58.874 36.000 0.00 0.00 33.52 3.33
2719 9674 7.880195 ACTAACTATTTCTCTCAACATGCAAGT 59.120 33.333 0.00 0.00 0.00 3.16
2737 9692 5.663795 CAAGTATGCTACATCATCACACC 57.336 43.478 0.00 0.00 0.00 4.16
2778 9733 4.878397 CCCACCTTCACTATCATTTGTCTC 59.122 45.833 0.00 0.00 0.00 3.36
2779 9734 5.338708 CCCACCTTCACTATCATTTGTCTCT 60.339 44.000 0.00 0.00 0.00 3.10
2780 9735 5.814705 CCACCTTCACTATCATTTGTCTCTC 59.185 44.000 0.00 0.00 0.00 3.20
2781 9736 6.401394 CACCTTCACTATCATTTGTCTCTCA 58.599 40.000 0.00 0.00 0.00 3.27
2782 9737 6.875726 CACCTTCACTATCATTTGTCTCTCAA 59.124 38.462 0.00 0.00 0.00 3.02
2783 9738 6.876257 ACCTTCACTATCATTTGTCTCTCAAC 59.124 38.462 0.00 0.00 35.61 3.18
2784 9739 6.875726 CCTTCACTATCATTTGTCTCTCAACA 59.124 38.462 0.00 0.00 35.61 3.33
2785 9740 7.551974 CCTTCACTATCATTTGTCTCTCAACAT 59.448 37.037 0.00 0.00 35.61 2.71
2786 9741 7.838771 TCACTATCATTTGTCTCTCAACATG 57.161 36.000 0.00 0.00 35.61 3.21
2787 9742 6.314648 TCACTATCATTTGTCTCTCAACATGC 59.685 38.462 0.00 0.00 35.61 4.06
2788 9743 6.093082 CACTATCATTTGTCTCTCAACATGCA 59.907 38.462 0.00 0.00 35.61 3.96
2789 9744 5.970317 ATCATTTGTCTCTCAACATGCAA 57.030 34.783 0.00 0.00 35.61 4.08
2790 9745 5.366829 TCATTTGTCTCTCAACATGCAAG 57.633 39.130 0.00 0.00 35.61 4.01
2791 9746 3.631145 TTTGTCTCTCAACATGCAAGC 57.369 42.857 0.00 0.00 35.61 4.01
2792 9747 2.259266 TGTCTCTCAACATGCAAGCA 57.741 45.000 0.00 0.00 0.00 3.91
2793 9748 2.786777 TGTCTCTCAACATGCAAGCAT 58.213 42.857 0.86 0.86 37.08 3.79
2808 9763 3.948851 CAAGCATGCTACATCATCACAC 58.051 45.455 23.00 0.00 0.00 3.82
2809 9764 2.569059 AGCATGCTACATCATCACACC 58.431 47.619 21.21 0.00 0.00 4.16
2810 9765 2.092807 AGCATGCTACATCATCACACCA 60.093 45.455 21.21 0.00 0.00 4.17
2811 9766 2.032550 GCATGCTACATCATCACACCAC 59.967 50.000 11.37 0.00 0.00 4.16
2812 9767 3.272581 CATGCTACATCATCACACCACA 58.727 45.455 0.00 0.00 0.00 4.17
2813 9768 3.632643 TGCTACATCATCACACCACAT 57.367 42.857 0.00 0.00 0.00 3.21
2814 9769 3.272581 TGCTACATCATCACACCACATG 58.727 45.455 0.00 0.00 0.00 3.21
2815 9770 2.032550 GCTACATCATCACACCACATGC 59.967 50.000 0.00 0.00 0.00 4.06
2816 9771 2.203470 ACATCATCACACCACATGCA 57.797 45.000 0.00 0.00 0.00 3.96
2817 9772 2.730382 ACATCATCACACCACATGCAT 58.270 42.857 0.00 0.00 0.00 3.96
2818 9773 2.425668 ACATCATCACACCACATGCATG 59.574 45.455 25.09 25.09 0.00 4.06
2819 9774 2.493414 TCATCACACCACATGCATGA 57.507 45.000 32.75 10.20 31.40 3.07
2820 9775 2.361789 TCATCACACCACATGCATGAG 58.638 47.619 32.75 24.31 30.70 2.90
2821 9776 2.027007 TCATCACACCACATGCATGAGA 60.027 45.455 32.75 18.25 30.70 3.27
2822 9777 2.565046 TCACACCACATGCATGAGAA 57.435 45.000 32.75 7.96 0.00 2.87
2823 9778 2.861274 TCACACCACATGCATGAGAAA 58.139 42.857 32.75 8.48 0.00 2.52
2824 9779 3.220940 TCACACCACATGCATGAGAAAA 58.779 40.909 32.75 8.98 0.00 2.29
2825 9780 3.253921 TCACACCACATGCATGAGAAAAG 59.746 43.478 32.75 17.73 0.00 2.27
2826 9781 2.559668 ACACCACATGCATGAGAAAAGG 59.440 45.455 32.75 22.35 0.00 3.11
2827 9782 1.547372 ACCACATGCATGAGAAAAGGC 59.453 47.619 32.75 0.00 0.00 4.35
2828 9783 1.134907 CCACATGCATGAGAAAAGGCC 60.135 52.381 32.75 0.00 0.00 5.19
2829 9784 1.546923 CACATGCATGAGAAAAGGCCA 59.453 47.619 32.75 0.00 0.00 5.36
2830 9785 1.547372 ACATGCATGAGAAAAGGCCAC 59.453 47.619 32.75 0.00 0.00 5.01
2831 9786 1.134907 CATGCATGAGAAAAGGCCACC 60.135 52.381 22.59 0.00 0.00 4.61
2832 9787 0.112995 TGCATGAGAAAAGGCCACCT 59.887 50.000 5.01 0.00 33.87 4.00
2834 9789 1.203287 GCATGAGAAAAGGCCACCTTC 59.797 52.381 5.01 4.28 43.92 3.46
2835 9790 2.517959 CATGAGAAAAGGCCACCTTCA 58.482 47.619 5.01 2.14 43.92 3.02
2836 9791 1.981256 TGAGAAAAGGCCACCTTCAC 58.019 50.000 5.01 3.77 43.92 3.18
2837 9792 1.494721 TGAGAAAAGGCCACCTTCACT 59.505 47.619 5.01 2.56 43.92 3.41
2838 9793 2.708861 TGAGAAAAGGCCACCTTCACTA 59.291 45.455 5.01 0.00 43.92 2.74
2839 9794 3.330701 TGAGAAAAGGCCACCTTCACTAT 59.669 43.478 5.01 0.00 43.92 2.12
2840 9795 3.942115 GAGAAAAGGCCACCTTCACTATC 59.058 47.826 5.01 0.00 43.92 2.08
2841 9796 3.330701 AGAAAAGGCCACCTTCACTATCA 59.669 43.478 5.01 0.00 43.92 2.15
2842 9797 4.018050 AGAAAAGGCCACCTTCACTATCAT 60.018 41.667 5.01 0.00 43.92 2.45
2843 9798 4.322057 AAAGGCCACCTTCACTATCATT 57.678 40.909 5.01 0.00 43.92 2.57
2844 9799 4.322057 AAGGCCACCTTCACTATCATTT 57.678 40.909 5.01 0.00 40.17 2.32
2845 9800 3.624777 AGGCCACCTTCACTATCATTTG 58.375 45.455 5.01 0.00 0.00 2.32
2846 9801 3.010584 AGGCCACCTTCACTATCATTTGT 59.989 43.478 5.01 0.00 0.00 2.83
2847 9802 3.378427 GGCCACCTTCACTATCATTTGTC 59.622 47.826 0.00 0.00 0.00 3.18
2848 9803 4.265073 GCCACCTTCACTATCATTTGTCT 58.735 43.478 0.00 0.00 0.00 3.41
2917 9872 3.434641 AGACTCATCTCAACATGCAAACG 59.565 43.478 0.00 0.00 0.00 3.60
2932 9887 6.922957 ACATGCAAACGTACATGAGAATTTTT 59.077 30.769 24.57 5.06 45.23 1.94
2936 9891 7.056800 GCAAACGTACATGAGAATTTTTGTTG 58.943 34.615 0.00 0.00 0.00 3.33
3146 11062 1.549170 CATGTACCCCTCCGCTATACC 59.451 57.143 0.00 0.00 0.00 2.73
3186 11102 0.467384 CATCTTCGCCTCCTGTCCAT 59.533 55.000 0.00 0.00 0.00 3.41
3233 11149 1.265236 CTCTGAAGACTGCTCCAGGT 58.735 55.000 0.00 0.00 35.51 4.00
3234 11150 1.622811 CTCTGAAGACTGCTCCAGGTT 59.377 52.381 0.00 0.00 35.51 3.50
3235 11151 2.828520 CTCTGAAGACTGCTCCAGGTTA 59.171 50.000 0.00 0.00 35.51 2.85
3236 11152 2.563179 TCTGAAGACTGCTCCAGGTTAC 59.437 50.000 0.00 0.00 35.51 2.50
3237 11153 2.300152 CTGAAGACTGCTCCAGGTTACA 59.700 50.000 0.00 0.00 35.51 2.41
3238 11154 2.906389 TGAAGACTGCTCCAGGTTACAT 59.094 45.455 0.00 0.00 35.51 2.29
3293 11213 6.514063 AGAATTGCCCTATCTTAGTTCGTAC 58.486 40.000 0.00 0.00 0.00 3.67
3299 11219 5.449725 GCCCTATCTTAGTTCGTACGTTTCT 60.450 44.000 16.05 13.65 0.00 2.52
3305 11225 6.963796 TCTTAGTTCGTACGTTTCTCTTCTT 58.036 36.000 16.05 0.00 0.00 2.52
3308 11228 6.507890 AGTTCGTACGTTTCTCTTCTTTTC 57.492 37.500 16.05 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.561419 TCTGTAGACCGAAAGACCAAGG 59.439 50.000 0.00 0.00 0.00 3.61
15 16 3.936372 TCTGTAGACCGAAAGACCAAG 57.064 47.619 0.00 0.00 0.00 3.61
17 18 3.427573 TCATCTGTAGACCGAAAGACCA 58.572 45.455 0.00 0.00 0.00 4.02
18 19 4.657436 ATCATCTGTAGACCGAAAGACC 57.343 45.455 0.00 0.00 0.00 3.85
19 20 5.507650 GGGTATCATCTGTAGACCGAAAGAC 60.508 48.000 0.00 0.00 0.00 3.01
20 21 4.583489 GGGTATCATCTGTAGACCGAAAGA 59.417 45.833 0.00 0.00 0.00 2.52
21 22 4.262079 GGGGTATCATCTGTAGACCGAAAG 60.262 50.000 0.00 0.00 0.00 2.62
22 23 3.640029 GGGGTATCATCTGTAGACCGAAA 59.360 47.826 0.00 0.00 0.00 3.46
23 24 3.117246 AGGGGTATCATCTGTAGACCGAA 60.117 47.826 0.00 0.00 0.00 4.30
27 28 5.817816 CACAAAAGGGGTATCATCTGTAGAC 59.182 44.000 0.00 0.00 0.00 2.59
28 29 5.487488 ACACAAAAGGGGTATCATCTGTAGA 59.513 40.000 0.00 0.00 0.00 2.59
29 30 5.586243 CACACAAAAGGGGTATCATCTGTAG 59.414 44.000 0.00 0.00 0.00 2.74
30 31 5.249622 TCACACAAAAGGGGTATCATCTGTA 59.750 40.000 0.00 0.00 0.00 2.74
31 32 4.042809 TCACACAAAAGGGGTATCATCTGT 59.957 41.667 0.00 0.00 0.00 3.41
32 33 4.588899 TCACACAAAAGGGGTATCATCTG 58.411 43.478 0.00 0.00 0.00 2.90
33 34 4.927267 TCACACAAAAGGGGTATCATCT 57.073 40.909 0.00 0.00 0.00 2.90
34 35 5.652014 TCAATCACACAAAAGGGGTATCATC 59.348 40.000 0.00 0.00 0.00 2.92
35 36 5.418840 GTCAATCACACAAAAGGGGTATCAT 59.581 40.000 0.00 0.00 0.00 2.45
37 38 5.010282 AGTCAATCACACAAAAGGGGTATC 58.990 41.667 0.00 0.00 0.00 2.24
40 41 3.117512 AGAGTCAATCACACAAAAGGGGT 60.118 43.478 0.00 0.00 0.00 4.95
41 42 3.490348 AGAGTCAATCACACAAAAGGGG 58.510 45.455 0.00 0.00 0.00 4.79
42 43 3.503748 GGAGAGTCAATCACACAAAAGGG 59.496 47.826 0.00 0.00 0.00 3.95
43 44 3.503748 GGGAGAGTCAATCACACAAAAGG 59.496 47.826 0.00 0.00 0.00 3.11
44 45 3.503748 GGGGAGAGTCAATCACACAAAAG 59.496 47.826 0.00 0.00 0.00 2.27
45 46 3.486383 GGGGAGAGTCAATCACACAAAA 58.514 45.455 0.00 0.00 0.00 2.44
46 47 2.549992 CGGGGAGAGTCAATCACACAAA 60.550 50.000 0.00 0.00 0.00 2.83
47 48 1.001974 CGGGGAGAGTCAATCACACAA 59.998 52.381 0.00 0.00 0.00 3.33
50 51 0.904865 AGCGGGGAGAGTCAATCACA 60.905 55.000 0.00 0.00 0.00 3.58
51 52 0.460987 CAGCGGGGAGAGTCAATCAC 60.461 60.000 0.00 0.00 0.00 3.06
52 53 1.900351 CAGCGGGGAGAGTCAATCA 59.100 57.895 0.00 0.00 0.00 2.57
53 54 1.522580 GCAGCGGGGAGAGTCAATC 60.523 63.158 0.00 0.00 0.00 2.67
54 55 2.586792 GCAGCGGGGAGAGTCAAT 59.413 61.111 0.00 0.00 0.00 2.57
112 114 3.409026 TTTTTGTTTTGTGGTGGTGCT 57.591 38.095 0.00 0.00 0.00 4.40
129 131 5.978919 CCGCATACATGTCTTGCATATTTTT 59.021 36.000 24.95 0.00 35.74 1.94
133 135 3.743521 ACCGCATACATGTCTTGCATAT 58.256 40.909 24.95 12.31 35.74 1.78
134 136 3.130633 GACCGCATACATGTCTTGCATA 58.869 45.455 24.95 0.16 35.74 3.14
137 139 0.301687 CGACCGCATACATGTCTTGC 59.698 55.000 18.93 18.93 0.00 4.01
151 153 3.254060 AGTTCATTGACTGAATCGACCG 58.746 45.455 0.00 0.00 45.36 4.79
154 156 4.220602 TCCAGAGTTCATTGACTGAATCGA 59.779 41.667 4.74 0.00 45.36 3.59
222 229 6.820656 ACTCAATAATCTTCAAGTAGCCACTG 59.179 38.462 0.00 0.00 34.36 3.66
283 290 3.250744 CAAGTTCAGAATGCAATGCCTG 58.749 45.455 1.53 3.02 34.76 4.85
301 308 5.406477 GCCCTTTTTAGCTGAAATTCACAAG 59.594 40.000 4.30 0.00 0.00 3.16
317 324 2.832563 CCGATTGTTGTTGCCCTTTTT 58.167 42.857 0.00 0.00 0.00 1.94
349 357 3.554934 TCTTCAGGCAGAGCTTTTTCAA 58.445 40.909 0.00 0.00 0.00 2.69
354 362 2.645838 TGTTCTTCAGGCAGAGCTTT 57.354 45.000 0.00 0.00 0.00 3.51
363 371 2.301346 ACAGGTTGCTTGTTCTTCAGG 58.699 47.619 0.00 0.00 0.00 3.86
364 372 3.957468 GAACAGGTTGCTTGTTCTTCAG 58.043 45.455 14.21 0.00 46.78 3.02
399 414 0.107945 AGCTTTGTCGAGGATGCTCC 60.108 55.000 8.84 0.00 36.58 4.70
400 415 1.285578 GAGCTTTGTCGAGGATGCTC 58.714 55.000 15.51 15.51 39.74 4.26
401 416 0.107945 GGAGCTTTGTCGAGGATGCT 60.108 55.000 7.74 7.74 0.00 3.79
404 419 1.902508 TGAAGGAGCTTTGTCGAGGAT 59.097 47.619 0.00 0.00 0.00 3.24
405 420 1.338107 TGAAGGAGCTTTGTCGAGGA 58.662 50.000 0.00 0.00 0.00 3.71
406 421 2.169832 TTGAAGGAGCTTTGTCGAGG 57.830 50.000 0.00 0.00 0.00 4.63
407 422 6.018669 GGTTATATTGAAGGAGCTTTGTCGAG 60.019 42.308 0.00 0.00 0.00 4.04
408 423 5.815740 GGTTATATTGAAGGAGCTTTGTCGA 59.184 40.000 0.00 0.00 0.00 4.20
409 424 5.276868 CGGTTATATTGAAGGAGCTTTGTCG 60.277 44.000 0.00 0.00 0.00 4.35
410 425 5.007724 CCGGTTATATTGAAGGAGCTTTGTC 59.992 44.000 0.00 0.00 0.00 3.18
411 426 4.881850 CCGGTTATATTGAAGGAGCTTTGT 59.118 41.667 0.00 0.00 0.00 2.83
413 428 4.461198 CCCGGTTATATTGAAGGAGCTTT 58.539 43.478 0.00 0.00 0.00 3.51
414 429 3.747708 GCCCGGTTATATTGAAGGAGCTT 60.748 47.826 0.00 0.00 0.00 3.74
415 430 2.224548 GCCCGGTTATATTGAAGGAGCT 60.225 50.000 0.00 0.00 0.00 4.09
416 431 2.152016 GCCCGGTTATATTGAAGGAGC 58.848 52.381 0.00 0.00 0.00 4.70
417 432 3.325135 AGAGCCCGGTTATATTGAAGGAG 59.675 47.826 0.00 0.00 0.00 3.69
418 433 3.071023 CAGAGCCCGGTTATATTGAAGGA 59.929 47.826 0.00 0.00 0.00 3.36
423 438 1.523758 GCCAGAGCCCGGTTATATTG 58.476 55.000 0.00 0.00 0.00 1.90
435 450 4.324267 TGTTTTAGAAAGTAGGCCAGAGC 58.676 43.478 5.01 0.00 38.76 4.09
438 453 5.461526 GCTTTGTTTTAGAAAGTAGGCCAG 58.538 41.667 5.01 0.00 33.66 4.85
439 454 4.023536 CGCTTTGTTTTAGAAAGTAGGCCA 60.024 41.667 5.01 0.00 33.66 5.36
440 455 4.023450 ACGCTTTGTTTTAGAAAGTAGGCC 60.023 41.667 0.00 0.00 33.66 5.19
441 456 5.104562 ACGCTTTGTTTTAGAAAGTAGGC 57.895 39.130 0.00 0.00 33.66 3.93
442 457 6.134061 GTGACGCTTTGTTTTAGAAAGTAGG 58.866 40.000 0.00 0.00 33.66 3.18
443 458 6.711579 TGTGACGCTTTGTTTTAGAAAGTAG 58.288 36.000 0.00 0.00 33.66 2.57
444 459 6.665474 TGTGACGCTTTGTTTTAGAAAGTA 57.335 33.333 0.00 0.00 33.66 2.24
445 460 5.554822 TGTGACGCTTTGTTTTAGAAAGT 57.445 34.783 0.00 0.00 33.66 2.66
449 464 2.939756 TGCTGTGACGCTTTGTTTTAGA 59.060 40.909 1.69 0.00 0.00 2.10
452 467 1.469079 GGTGCTGTGACGCTTTGTTTT 60.469 47.619 1.69 0.00 0.00 2.43
459 474 1.301244 CTTGAGGTGCTGTGACGCT 60.301 57.895 1.69 0.00 0.00 5.07
462 477 2.999355 GAGATTCTTGAGGTGCTGTGAC 59.001 50.000 0.00 0.00 0.00 3.67
466 481 3.703556 TCTAGGAGATTCTTGAGGTGCTG 59.296 47.826 0.00 0.00 0.00 4.41
467 482 3.987745 TCTAGGAGATTCTTGAGGTGCT 58.012 45.455 0.00 0.00 0.00 4.40
469 484 6.516527 GCAGTATCTAGGAGATTCTTGAGGTG 60.517 46.154 0.00 0.00 36.20 4.00
474 489 5.304101 AGTGGCAGTATCTAGGAGATTCTTG 59.696 44.000 0.00 0.00 36.20 3.02
476 491 4.832266 CAGTGGCAGTATCTAGGAGATTCT 59.168 45.833 0.00 0.00 36.20 2.40
477 492 4.021544 CCAGTGGCAGTATCTAGGAGATTC 60.022 50.000 0.00 0.00 36.20 2.52
478 493 3.900601 CCAGTGGCAGTATCTAGGAGATT 59.099 47.826 0.00 0.00 36.20 2.40
480 495 2.424957 CCCAGTGGCAGTATCTAGGAGA 60.425 54.545 2.61 0.00 0.00 3.71
481 496 1.967066 CCCAGTGGCAGTATCTAGGAG 59.033 57.143 2.61 0.00 0.00 3.69
483 498 2.088104 TCCCAGTGGCAGTATCTAGG 57.912 55.000 2.61 0.00 0.00 3.02
555 660 2.697751 AGGATTGCGACAGAGCTAAGAT 59.302 45.455 0.00 0.00 38.13 2.40
573 678 2.557676 CCAGAGTTCCAGTCCAGTAGGA 60.558 54.545 0.00 0.00 43.21 2.94
576 681 2.992847 TCCAGAGTTCCAGTCCAGTA 57.007 50.000 0.00 0.00 0.00 2.74
580 685 2.834549 TCATCTTCCAGAGTTCCAGTCC 59.165 50.000 0.00 0.00 0.00 3.85
581 686 4.751767 ATCATCTTCCAGAGTTCCAGTC 57.248 45.455 0.00 0.00 0.00 3.51
583 688 7.961351 ACTTATATCATCTTCCAGAGTTCCAG 58.039 38.462 0.00 0.00 0.00 3.86
585 690 8.207545 ACAACTTATATCATCTTCCAGAGTTCC 58.792 37.037 0.00 0.00 0.00 3.62
586 691 9.039870 CACAACTTATATCATCTTCCAGAGTTC 57.960 37.037 0.00 0.00 0.00 3.01
587 692 8.762645 TCACAACTTATATCATCTTCCAGAGTT 58.237 33.333 0.00 0.00 0.00 3.01
588 693 8.200792 GTCACAACTTATATCATCTTCCAGAGT 58.799 37.037 0.00 0.00 0.00 3.24
589 694 8.420222 AGTCACAACTTATATCATCTTCCAGAG 58.580 37.037 0.00 0.00 28.74 3.35
590 695 8.200120 CAGTCACAACTTATATCATCTTCCAGA 58.800 37.037 0.00 0.00 31.71 3.86
596 701 9.896645 ATTTGTCAGTCACAACTTATATCATCT 57.103 29.630 0.00 0.00 45.12 2.90
605 723 6.757897 TCTTTGATTTGTCAGTCACAACTT 57.242 33.333 0.00 0.00 45.12 2.66
658 776 3.183172 CCTACATTTCGTGAGATCATGCG 59.817 47.826 0.00 0.00 41.60 4.73
737 859 6.350277 CCTGTTAGTACTACTGCTTGCTTACT 60.350 42.308 0.91 0.00 0.00 2.24
738 860 5.805994 CCTGTTAGTACTACTGCTTGCTTAC 59.194 44.000 0.91 0.00 0.00 2.34
739 861 5.713389 TCCTGTTAGTACTACTGCTTGCTTA 59.287 40.000 0.91 0.00 0.00 3.09
745 867 3.439476 CGTGTCCTGTTAGTACTACTGCT 59.561 47.826 0.91 0.00 0.00 4.24
760 882 2.592102 TCTTGGGTACTACGTGTCCT 57.408 50.000 0.00 0.00 0.00 3.85
859 1008 2.474816 GAGACGGCAGTGTATCATTCC 58.525 52.381 0.00 0.00 30.59 3.01
864 1013 1.043673 AGGGGAGACGGCAGTGTATC 61.044 60.000 0.00 0.00 0.00 2.24
885 1034 3.094484 TGGAGAGGAAGAAGGAGAGAC 57.906 52.381 0.00 0.00 0.00 3.36
896 1045 3.515901 GAGGAGCTAAACTTGGAGAGGAA 59.484 47.826 0.00 0.00 0.00 3.36
984 1136 0.958091 CCATCGAGGGAGCTCTGTAG 59.042 60.000 11.55 3.66 0.00 2.74
985 1137 0.259065 ACCATCGAGGGAGCTCTGTA 59.741 55.000 25.24 0.00 43.89 2.74
987 1139 1.440893 CACCATCGAGGGAGCTCTG 59.559 63.158 25.24 6.15 43.89 3.35
988 1140 2.430610 GCACCATCGAGGGAGCTCT 61.431 63.158 27.66 0.37 43.89 4.09
989 1141 2.107953 GCACCATCGAGGGAGCTC 59.892 66.667 27.66 4.71 43.89 4.09
1236 4505 7.669722 ACCTGGATAAAAATCTCAGCAAAAGTA 59.330 33.333 0.00 0.00 0.00 2.24
1278 4656 2.025155 GCGTCCATAAGAGACTCCTCA 58.975 52.381 0.00 0.00 41.87 3.86
1356 4734 1.678728 CCGCCATCTTTCAGGTTGCTA 60.679 52.381 0.00 0.00 0.00 3.49
1367 4745 3.574074 AAGTGCCTGCCGCCATCTT 62.574 57.895 0.00 0.00 36.24 2.40
1379 4763 1.303643 CCTTCCACCTCCAAGTGCC 60.304 63.158 0.00 0.00 36.38 5.01
1509 4899 0.328258 ACCTGAAAGATTCCGGGTGG 59.672 55.000 0.00 0.00 38.25 4.61
1540 4935 4.265073 CAACAGAGAATGAAGGTAAGGGG 58.735 47.826 0.00 0.00 0.00 4.79
1556 4955 4.903054 ACATCATCAAGAGAAGCAACAGA 58.097 39.130 0.00 0.00 0.00 3.41
1588 5235 2.126467 GAAAAGTGCATCGCAAGCAAA 58.874 42.857 0.00 0.00 44.64 3.68
1603 5250 5.144359 CGAAATACTTGTCGTTGGGAAAAG 58.856 41.667 0.00 0.00 44.32 2.27
1604 5251 4.023878 CCGAAATACTTGTCGTTGGGAAAA 60.024 41.667 0.00 0.00 35.48 2.29
1605 5252 3.499157 CCGAAATACTTGTCGTTGGGAAA 59.501 43.478 0.00 0.00 35.48 3.13
1606 5253 3.068560 CCGAAATACTTGTCGTTGGGAA 58.931 45.455 0.00 0.00 35.48 3.97
1607 5254 2.037511 ACCGAAATACTTGTCGTTGGGA 59.962 45.455 0.00 0.00 35.48 4.37
1608 5255 2.419667 ACCGAAATACTTGTCGTTGGG 58.580 47.619 0.00 0.00 35.48 4.12
1609 5256 3.989167 TGTACCGAAATACTTGTCGTTGG 59.011 43.478 0.00 0.00 35.48 3.77
1610 5257 4.919168 TCTGTACCGAAATACTTGTCGTTG 59.081 41.667 0.00 0.00 35.48 4.10
1611 5258 5.125100 TCTGTACCGAAATACTTGTCGTT 57.875 39.130 0.00 0.00 35.48 3.85
1612 5259 4.380233 CCTCTGTACCGAAATACTTGTCGT 60.380 45.833 0.00 0.00 35.48 4.34
1613 5260 4.103357 CCTCTGTACCGAAATACTTGTCG 58.897 47.826 0.00 0.00 37.01 4.35
1614 5261 4.159135 TCCCTCTGTACCGAAATACTTGTC 59.841 45.833 0.00 0.00 0.00 3.18
1615 5262 4.091549 TCCCTCTGTACCGAAATACTTGT 58.908 43.478 0.00 0.00 0.00 3.16
1616 5263 4.730949 TCCCTCTGTACCGAAATACTTG 57.269 45.455 0.00 0.00 0.00 3.16
1617 5264 5.952347 AATCCCTCTGTACCGAAATACTT 57.048 39.130 0.00 0.00 0.00 2.24
1618 5265 6.134754 ACTAATCCCTCTGTACCGAAATACT 58.865 40.000 0.00 0.00 0.00 2.12
1619 5266 6.402456 ACTAATCCCTCTGTACCGAAATAC 57.598 41.667 0.00 0.00 0.00 1.89
1620 5267 7.427989 AAACTAATCCCTCTGTACCGAAATA 57.572 36.000 0.00 0.00 0.00 1.40
1621 5268 5.952347 AACTAATCCCTCTGTACCGAAAT 57.048 39.130 0.00 0.00 0.00 2.17
1622 5269 5.750352 AAACTAATCCCTCTGTACCGAAA 57.250 39.130 0.00 0.00 0.00 3.46
1623 5270 5.012354 ACAAAACTAATCCCTCTGTACCGAA 59.988 40.000 0.00 0.00 0.00 4.30
1624 5271 4.529377 ACAAAACTAATCCCTCTGTACCGA 59.471 41.667 0.00 0.00 0.00 4.69
1625 5272 4.630069 CACAAAACTAATCCCTCTGTACCG 59.370 45.833 0.00 0.00 0.00 4.02
1626 5273 5.801380 TCACAAAACTAATCCCTCTGTACC 58.199 41.667 0.00 0.00 0.00 3.34
1627 5274 7.739498 TTTCACAAAACTAATCCCTCTGTAC 57.261 36.000 0.00 0.00 0.00 2.90
1628 5275 8.934023 AATTTCACAAAACTAATCCCTCTGTA 57.066 30.769 0.00 0.00 0.00 2.74
1629 5276 7.839680 AATTTCACAAAACTAATCCCTCTGT 57.160 32.000 0.00 0.00 0.00 3.41
1781 5506 8.194421 ACATCCCTGTACACAGAAAGACTCTG 62.194 46.154 10.96 0.22 46.59 3.35
1823 5556 8.144862 AGATCTCTTATTCTCTTGGTTCTTGT 57.855 34.615 0.00 0.00 0.00 3.16
2098 5831 5.181245 GCAGTCAGCTAAGTTAATCACCAAA 59.819 40.000 0.00 0.00 41.15 3.28
2197 5993 9.888878 CTTGCATCAAATACTTGTATTAGGATG 57.111 33.333 24.70 24.70 36.05 3.51
2210 6034 6.143438 GCACATTATCTGCTTGCATCAAATAC 59.857 38.462 0.00 0.00 0.00 1.89
2218 6046 2.414426 CGTTGCACATTATCTGCTTGCA 60.414 45.455 0.00 0.00 35.53 4.08
2343 6171 3.866379 ATCCAGCAAACCAGGCGCA 62.866 57.895 10.83 0.00 36.08 6.09
2400 6228 5.294799 TCAGTCGAAAGAAAAACCGAAATCA 59.705 36.000 0.00 0.00 45.01 2.57
2426 6260 3.830744 TCTCTTCCCTTGACGAAAACA 57.169 42.857 0.00 0.00 0.00 2.83
2427 6261 4.755123 TGAATCTCTTCCCTTGACGAAAAC 59.245 41.667 0.00 0.00 0.00 2.43
2667 9177 6.408662 GGGGGCCAGCTATTTAGATATAGAAG 60.409 46.154 4.39 0.00 31.10 2.85
2686 9228 2.778270 AGAGAAATAGTTAGTGGGGGCC 59.222 50.000 0.00 0.00 0.00 5.80
2719 9674 4.751767 TGTGGTGTGATGATGTAGCATA 57.248 40.909 0.00 0.00 0.00 3.14
2724 9679 3.347077 TGCATGTGGTGTGATGATGTA 57.653 42.857 0.00 0.00 0.00 2.29
2737 9692 1.134907 GGGCCTTTTCTCATGCATGTG 60.135 52.381 25.43 22.71 0.00 3.21
2768 9723 4.320714 GCTTGCATGTTGAGAGACAAATGA 60.321 41.667 1.14 0.00 40.36 2.57
2787 9742 3.242969 GGTGTGATGATGTAGCATGCTTG 60.243 47.826 28.02 0.00 0.00 4.01
2788 9743 2.947652 GGTGTGATGATGTAGCATGCTT 59.052 45.455 28.02 8.04 0.00 3.91
2789 9744 2.092807 TGGTGTGATGATGTAGCATGCT 60.093 45.455 25.99 25.99 0.00 3.79
2790 9745 2.032550 GTGGTGTGATGATGTAGCATGC 59.967 50.000 10.51 10.51 0.00 4.06
2791 9746 3.272581 TGTGGTGTGATGATGTAGCATG 58.727 45.455 0.00 0.00 0.00 4.06
2792 9747 3.632643 TGTGGTGTGATGATGTAGCAT 57.367 42.857 0.00 0.00 0.00 3.79
2793 9748 3.272581 CATGTGGTGTGATGATGTAGCA 58.727 45.455 0.00 0.00 0.00 3.49
2794 9749 2.032550 GCATGTGGTGTGATGATGTAGC 59.967 50.000 0.00 0.00 0.00 3.58
2795 9750 3.272581 TGCATGTGGTGTGATGATGTAG 58.727 45.455 0.00 0.00 0.00 2.74
2796 9751 3.347077 TGCATGTGGTGTGATGATGTA 57.653 42.857 0.00 0.00 0.00 2.29
2797 9752 2.203470 TGCATGTGGTGTGATGATGT 57.797 45.000 0.00 0.00 0.00 3.06
2798 9753 2.685897 TCATGCATGTGGTGTGATGATG 59.314 45.455 25.43 0.00 29.35 3.07
2799 9754 2.949644 CTCATGCATGTGGTGTGATGAT 59.050 45.455 25.43 0.00 32.15 2.45
2800 9755 2.027007 TCTCATGCATGTGGTGTGATGA 60.027 45.455 25.43 2.85 31.86 2.92
2801 9756 2.361789 TCTCATGCATGTGGTGTGATG 58.638 47.619 25.43 0.00 0.00 3.07
2802 9757 2.793288 TCTCATGCATGTGGTGTGAT 57.207 45.000 25.43 0.00 0.00 3.06
2803 9758 2.565046 TTCTCATGCATGTGGTGTGA 57.435 45.000 25.43 12.31 0.00 3.58
2804 9759 3.571571 CTTTTCTCATGCATGTGGTGTG 58.428 45.455 25.43 11.21 0.00 3.82
2805 9760 2.559668 CCTTTTCTCATGCATGTGGTGT 59.440 45.455 25.43 0.00 0.00 4.16
2806 9761 2.673043 GCCTTTTCTCATGCATGTGGTG 60.673 50.000 25.43 14.20 0.00 4.17
2807 9762 1.547372 GCCTTTTCTCATGCATGTGGT 59.453 47.619 25.43 0.00 0.00 4.16
2808 9763 1.134907 GGCCTTTTCTCATGCATGTGG 60.135 52.381 25.43 18.62 0.00 4.17
2809 9764 1.546923 TGGCCTTTTCTCATGCATGTG 59.453 47.619 25.43 22.71 0.00 3.21
2810 9765 1.547372 GTGGCCTTTTCTCATGCATGT 59.453 47.619 25.43 0.00 0.00 3.21
2811 9766 1.134907 GGTGGCCTTTTCTCATGCATG 60.135 52.381 21.07 21.07 0.00 4.06
2812 9767 1.188863 GGTGGCCTTTTCTCATGCAT 58.811 50.000 3.32 0.00 0.00 3.96
2813 9768 0.112995 AGGTGGCCTTTTCTCATGCA 59.887 50.000 3.32 0.00 0.00 3.96
2814 9769 1.203287 GAAGGTGGCCTTTTCTCATGC 59.797 52.381 3.32 0.00 44.82 4.06
2815 9770 2.229784 GTGAAGGTGGCCTTTTCTCATG 59.770 50.000 3.32 0.00 44.82 3.07
2816 9771 2.108952 AGTGAAGGTGGCCTTTTCTCAT 59.891 45.455 3.32 0.00 44.82 2.90
2817 9772 1.494721 AGTGAAGGTGGCCTTTTCTCA 59.505 47.619 3.32 0.00 44.82 3.27
2818 9773 2.278332 AGTGAAGGTGGCCTTTTCTC 57.722 50.000 3.32 6.38 44.82 2.87
2819 9774 3.330701 TGATAGTGAAGGTGGCCTTTTCT 59.669 43.478 3.32 6.49 44.82 2.52
2820 9775 3.686016 TGATAGTGAAGGTGGCCTTTTC 58.314 45.455 3.32 5.90 44.82 2.29
2821 9776 3.806949 TGATAGTGAAGGTGGCCTTTT 57.193 42.857 3.32 0.00 44.82 2.27
2822 9777 4.322057 AATGATAGTGAAGGTGGCCTTT 57.678 40.909 3.32 0.00 44.82 3.11
2824 9779 3.010584 ACAAATGATAGTGAAGGTGGCCT 59.989 43.478 3.32 0.00 33.87 5.19
2825 9780 3.356290 ACAAATGATAGTGAAGGTGGCC 58.644 45.455 0.00 0.00 0.00 5.36
2826 9781 4.265073 AGACAAATGATAGTGAAGGTGGC 58.735 43.478 0.00 0.00 0.00 5.01
2827 9782 5.738909 AGAGACAAATGATAGTGAAGGTGG 58.261 41.667 0.00 0.00 0.00 4.61
2828 9783 6.401394 TGAGAGACAAATGATAGTGAAGGTG 58.599 40.000 0.00 0.00 0.00 4.00
2829 9784 6.611613 TGAGAGACAAATGATAGTGAAGGT 57.388 37.500 0.00 0.00 0.00 3.50
2830 9785 6.875726 TGTTGAGAGACAAATGATAGTGAAGG 59.124 38.462 0.00 0.00 40.36 3.46
2831 9786 7.895975 TGTTGAGAGACAAATGATAGTGAAG 57.104 36.000 0.00 0.00 40.36 3.02
2832 9787 7.148356 GCATGTTGAGAGACAAATGATAGTGAA 60.148 37.037 0.00 0.00 40.36 3.18
2833 9788 6.314648 GCATGTTGAGAGACAAATGATAGTGA 59.685 38.462 0.00 0.00 40.36 3.41
2834 9789 6.093082 TGCATGTTGAGAGACAAATGATAGTG 59.907 38.462 0.00 0.00 40.36 2.74
2835 9790 6.175471 TGCATGTTGAGAGACAAATGATAGT 58.825 36.000 0.00 0.00 40.36 2.12
2836 9791 6.673154 TGCATGTTGAGAGACAAATGATAG 57.327 37.500 0.00 0.00 40.36 2.08
2837 9792 6.403964 GCTTGCATGTTGAGAGACAAATGATA 60.404 38.462 1.14 0.00 40.36 2.15
2838 9793 5.621555 GCTTGCATGTTGAGAGACAAATGAT 60.622 40.000 1.14 0.00 40.36 2.45
2839 9794 4.320714 GCTTGCATGTTGAGAGACAAATGA 60.321 41.667 1.14 0.00 40.36 2.57
2840 9795 3.918591 GCTTGCATGTTGAGAGACAAATG 59.081 43.478 1.14 0.00 40.36 2.32
2841 9796 3.570975 TGCTTGCATGTTGAGAGACAAAT 59.429 39.130 1.14 0.00 40.36 2.32
2842 9797 2.950975 TGCTTGCATGTTGAGAGACAAA 59.049 40.909 1.14 0.00 40.36 2.83
2843 9798 2.574450 TGCTTGCATGTTGAGAGACAA 58.426 42.857 1.14 0.00 36.02 3.18
2844 9799 2.259266 TGCTTGCATGTTGAGAGACA 57.741 45.000 1.14 0.00 0.00 3.41
2845 9800 2.486982 ACATGCTTGCATGTTGAGAGAC 59.513 45.455 28.83 0.00 42.56 3.36
2846 9801 2.745821 GACATGCTTGCATGTTGAGAGA 59.254 45.455 32.76 0.00 44.88 3.10
2847 9802 2.486592 TGACATGCTTGCATGTTGAGAG 59.513 45.455 32.76 12.43 44.88 3.20
2848 9803 2.227149 GTGACATGCTTGCATGTTGAGA 59.773 45.455 32.76 18.95 44.88 3.27
3090 11006 1.202710 TGATACCCTGCACGTTGTTGT 60.203 47.619 0.00 0.00 0.00 3.32
3146 11062 2.864097 GCTCCCATGTATAGCAGTCGTG 60.864 54.545 6.36 0.00 36.26 4.35
3186 11102 3.057596 GGCAAAACATGGTCATCTTTCGA 60.058 43.478 0.00 0.00 0.00 3.71
3293 11213 5.006358 TGAAGAACGGAAAAGAAGAGAAACG 59.994 40.000 0.00 0.00 0.00 3.60
3299 11219 8.721478 CAGAAATATGAAGAACGGAAAAGAAGA 58.279 33.333 0.00 0.00 0.00 2.87
3305 11225 4.094294 CGGCAGAAATATGAAGAACGGAAA 59.906 41.667 0.00 0.00 0.00 3.13
3308 11228 2.286418 GCGGCAGAAATATGAAGAACGG 60.286 50.000 0.00 0.00 0.00 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.