Multiple sequence alignment - TraesCS6A01G320600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G320600 chr6A 100.000 2315 0 0 1 2315 555421798 555419484 0.000000e+00 4276
1 TraesCS6A01G320600 chr6A 86.435 317 35 6 1225 1539 74321357 74321667 7.920000e-90 340
2 TraesCS6A01G320600 chr5D 89.313 524 32 14 713 1212 353076599 353076076 9.020000e-179 636
3 TraesCS6A01G320600 chr5D 92.248 129 10 0 1 129 524591019 524590891 1.410000e-42 183
4 TraesCS6A01G320600 chr5D 95.522 67 3 0 435 501 353076736 353076670 8.750000e-20 108
5 TraesCS6A01G320600 chr5B 88.931 524 34 14 713 1212 416160162 416159639 1.950000e-175 625
6 TraesCS6A01G320600 chr5A 88.190 525 38 14 713 1213 452687728 452688252 2.540000e-169 604
7 TraesCS6A01G320600 chr4B 88.054 519 39 8 1 501 429345893 429345380 5.510000e-166 593
8 TraesCS6A01G320600 chr4B 91.176 136 8 4 3 135 636774390 636774256 5.080000e-42 182
9 TraesCS6A01G320600 chr3A 86.982 507 57 6 1 501 12433606 12434109 1.550000e-156 562
10 TraesCS6A01G320600 chr3A 86.944 337 31 9 1203 1536 12434783 12435109 1.310000e-97 366
11 TraesCS6A01G320600 chr6D 81.370 730 68 29 1586 2298 410136602 410135924 1.220000e-147 532
12 TraesCS6A01G320600 chr6D 84.956 339 38 9 1203 1535 161098548 161098217 4.770000e-87 331
13 TraesCS6A01G320600 chr6D 94.156 154 7 2 1557 1709 410145962 410145810 1.380000e-57 233
14 TraesCS6A01G320600 chr7D 86.834 319 30 6 1220 1535 54149473 54149164 1.700000e-91 346
15 TraesCS6A01G320600 chr7D 93.798 129 8 0 1 129 574817089 574816961 6.530000e-46 195
16 TraesCS6A01G320600 chr7D 92.248 129 10 0 1 129 159704049 159703921 1.410000e-42 183
17 TraesCS6A01G320600 chr7D 92.857 126 9 0 1 126 538598699 538598824 1.410000e-42 183
18 TraesCS6A01G320600 chr2D 86.378 323 34 6 1216 1533 425214692 425215009 6.120000e-91 344
19 TraesCS6A01G320600 chr2D 85.373 335 32 9 1203 1532 627325106 627325428 4.770000e-87 331
20 TraesCS6A01G320600 chr2D 85.231 325 38 6 1216 1535 423122673 423122992 2.220000e-85 326
21 TraesCS6A01G320600 chr2D 80.757 317 26 20 130 432 186700864 186700569 5.010000e-52 215
22 TraesCS6A01G320600 chr2A 85.397 315 38 7 1222 1533 285678799 285679108 1.030000e-83 320
23 TraesCS6A01G320600 chr7A 85.350 314 38 5 1225 1535 562903947 562903639 3.710000e-83 318
24 TraesCS6A01G320600 chr1D 94.937 158 8 0 520 677 356075561 356075404 4.940000e-62 248
25 TraesCS6A01G320600 chr1D 95.161 62 3 0 645 706 356075371 356075310 5.260000e-17 99
26 TraesCS6A01G320600 chr1B 94.304 158 9 0 520 677 478599929 478599772 2.300000e-60 243
27 TraesCS6A01G320600 chr1B 98.387 62 1 0 645 706 478599739 478599678 2.430000e-20 110
28 TraesCS6A01G320600 chr1A 94.268 157 9 0 520 676 456656698 456656542 8.270000e-60 241
29 TraesCS6A01G320600 chr1A 98.387 62 1 0 645 706 456656534 456656473 2.430000e-20 110
30 TraesCS6A01G320600 chr6B 80.272 294 23 11 2025 2314 616863397 616863659 3.040000e-44 189
31 TraesCS6A01G320600 chr3D 93.023 129 7 1 1 129 474672617 474672491 1.090000e-43 187
32 TraesCS6A01G320600 chr3B 92.913 127 9 0 3 129 613754624 613754498 3.930000e-43 185


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G320600 chr6A 555419484 555421798 2314 True 4276 4276 100.0000 1 2315 1 chr6A.!!$R1 2314
1 TraesCS6A01G320600 chr5D 353076076 353076736 660 True 372 636 92.4175 435 1212 2 chr5D.!!$R2 777
2 TraesCS6A01G320600 chr5B 416159639 416160162 523 True 625 625 88.9310 713 1212 1 chr5B.!!$R1 499
3 TraesCS6A01G320600 chr5A 452687728 452688252 524 False 604 604 88.1900 713 1213 1 chr5A.!!$F1 500
4 TraesCS6A01G320600 chr4B 429345380 429345893 513 True 593 593 88.0540 1 501 1 chr4B.!!$R1 500
5 TraesCS6A01G320600 chr3A 12433606 12435109 1503 False 464 562 86.9630 1 1536 2 chr3A.!!$F1 1535
6 TraesCS6A01G320600 chr6D 410135924 410136602 678 True 532 532 81.3700 1586 2298 1 chr6D.!!$R2 712

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
633 672 0.03582 GTCATTGCCACCTCGGGTTA 60.036 55.0 0.0 0.0 31.02 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1476 1659 0.106708 AGAGCAACAAACGAGCCAGA 59.893 50.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 4.082523 CGAAAGCCAGGCCCGAGA 62.083 66.667 8.22 0.00 0.00 4.04
49 50 2.860972 GAAAGCCAGGCCCGAGAGAC 62.861 65.000 8.22 0.00 0.00 3.36
106 107 2.758979 TGTGTCTCGAGTTAATCCCTCC 59.241 50.000 13.13 0.00 0.00 4.30
235 254 2.347490 GAAGTGGCCTCCGCTGAA 59.653 61.111 3.32 0.00 44.35 3.02
245 264 3.129300 CCGCTGAATCGGCCTCTA 58.871 61.111 8.67 0.00 43.18 2.43
266 285 3.339464 CGCGCCGTTTGTACCACA 61.339 61.111 0.00 0.00 0.00 4.17
278 297 2.878089 TACCACAAGCTGCGCCTCA 61.878 57.895 4.18 0.00 0.00 3.86
301 320 3.123620 GCAGGCTTGCCTCTGTCG 61.124 66.667 10.18 1.36 44.74 4.35
421 440 4.397832 TTTACCTCCGCGCCCACC 62.398 66.667 0.00 0.00 0.00 4.61
432 451 2.997897 GCCCACCGAGTGACCTCT 60.998 66.667 5.71 0.00 35.23 3.69
522 561 1.987855 TGCCCCTCTTCGATCGGTT 60.988 57.895 16.41 0.00 0.00 4.44
523 562 1.221021 GCCCCTCTTCGATCGGTTT 59.779 57.895 16.41 0.00 0.00 3.27
525 564 1.369625 CCCCTCTTCGATCGGTTTTG 58.630 55.000 16.41 1.65 0.00 2.44
526 565 1.338769 CCCCTCTTCGATCGGTTTTGT 60.339 52.381 16.41 0.00 0.00 2.83
527 566 1.732259 CCCTCTTCGATCGGTTTTGTG 59.268 52.381 16.41 2.70 0.00 3.33
528 567 1.128692 CCTCTTCGATCGGTTTTGTGC 59.871 52.381 16.41 0.00 0.00 4.57
529 568 1.128692 CTCTTCGATCGGTTTTGTGCC 59.871 52.381 16.41 0.00 0.00 5.01
530 569 0.871722 CTTCGATCGGTTTTGTGCCA 59.128 50.000 16.41 0.00 0.00 4.92
531 570 1.265635 CTTCGATCGGTTTTGTGCCAA 59.734 47.619 16.41 0.00 0.00 4.52
532 571 0.871722 TCGATCGGTTTTGTGCCAAG 59.128 50.000 16.41 0.00 0.00 3.61
533 572 0.729140 CGATCGGTTTTGTGCCAAGC 60.729 55.000 7.38 0.00 0.00 4.01
534 573 0.313672 GATCGGTTTTGTGCCAAGCA 59.686 50.000 0.00 0.00 35.60 3.91
535 574 0.314935 ATCGGTTTTGTGCCAAGCAG 59.685 50.000 0.00 0.00 40.08 4.24
536 575 1.034838 TCGGTTTTGTGCCAAGCAGT 61.035 50.000 0.00 0.00 40.08 4.40
537 576 0.179113 CGGTTTTGTGCCAAGCAGTT 60.179 50.000 0.00 0.00 40.08 3.16
538 577 1.289276 GGTTTTGTGCCAAGCAGTTG 58.711 50.000 0.00 0.00 40.08 3.16
539 578 1.134848 GGTTTTGTGCCAAGCAGTTGA 60.135 47.619 0.00 0.00 40.08 3.18
540 579 2.483538 GGTTTTGTGCCAAGCAGTTGAT 60.484 45.455 0.00 0.00 40.08 2.57
542 581 0.961019 TTGTGCCAAGCAGTTGATCC 59.039 50.000 0.00 0.00 40.08 3.36
543 582 0.111061 TGTGCCAAGCAGTTGATCCT 59.889 50.000 0.00 0.00 40.08 3.24
544 583 1.350684 TGTGCCAAGCAGTTGATCCTA 59.649 47.619 0.00 0.00 40.08 2.94
545 584 2.012673 GTGCCAAGCAGTTGATCCTAG 58.987 52.381 0.00 0.00 40.08 3.02
546 585 1.908619 TGCCAAGCAGTTGATCCTAGA 59.091 47.619 0.00 0.00 35.46 2.43
547 586 2.093288 TGCCAAGCAGTTGATCCTAGAG 60.093 50.000 0.00 0.00 35.46 2.43
548 587 2.093235 GCCAAGCAGTTGATCCTAGAGT 60.093 50.000 0.00 0.00 35.46 3.24
549 588 3.620966 GCCAAGCAGTTGATCCTAGAGTT 60.621 47.826 0.00 0.00 35.46 3.01
551 590 4.081198 CCAAGCAGTTGATCCTAGAGTTCT 60.081 45.833 0.00 0.00 35.46 3.01
552 591 5.486526 CAAGCAGTTGATCCTAGAGTTCTT 58.513 41.667 0.00 0.00 35.46 2.52
553 592 5.083533 AGCAGTTGATCCTAGAGTTCTTG 57.916 43.478 0.00 0.00 0.00 3.02
554 593 4.081198 AGCAGTTGATCCTAGAGTTCTTGG 60.081 45.833 3.59 3.59 39.70 3.61
560 599 2.724454 TCCTAGAGTTCTTGGACGAGG 58.276 52.381 8.02 0.00 41.70 4.63
561 600 2.041350 TCCTAGAGTTCTTGGACGAGGT 59.959 50.000 8.02 0.00 41.70 3.85
562 601 2.424246 CCTAGAGTTCTTGGACGAGGTC 59.576 54.545 3.89 0.00 40.59 3.85
563 602 0.882474 AGAGTTCTTGGACGAGGTCG 59.118 55.000 0.00 0.00 46.33 4.79
580 619 3.578456 GTCAAGACGCCCACCATG 58.422 61.111 0.00 0.00 0.00 3.66
581 620 2.359850 TCAAGACGCCCACCATGC 60.360 61.111 0.00 0.00 0.00 4.06
582 621 2.360350 CAAGACGCCCACCATGCT 60.360 61.111 0.00 0.00 0.00 3.79
583 622 1.973281 CAAGACGCCCACCATGCTT 60.973 57.895 0.00 0.00 0.00 3.91
584 623 1.973281 AAGACGCCCACCATGCTTG 60.973 57.895 0.00 0.00 0.00 4.01
585 624 4.120331 GACGCCCACCATGCTTGC 62.120 66.667 0.00 0.00 0.00 4.01
586 625 4.666253 ACGCCCACCATGCTTGCT 62.666 61.111 0.00 0.00 0.00 3.91
587 626 4.124351 CGCCCACCATGCTTGCTG 62.124 66.667 0.00 0.00 0.00 4.41
588 627 3.766691 GCCCACCATGCTTGCTGG 61.767 66.667 6.91 6.91 39.80 4.85
589 628 3.766691 CCCACCATGCTTGCTGGC 61.767 66.667 8.17 0.00 37.27 4.85
590 629 2.992689 CCACCATGCTTGCTGGCA 60.993 61.111 6.63 6.63 46.63 4.92
591 630 2.575893 CCACCATGCTTGCTGGCAA 61.576 57.895 7.78 7.78 45.68 4.52
592 631 1.373748 CACCATGCTTGCTGGCAAC 60.374 57.895 3.72 3.05 45.68 4.17
593 632 1.532316 ACCATGCTTGCTGGCAACT 60.532 52.632 3.72 0.00 45.68 3.16
594 633 1.214589 CCATGCTTGCTGGCAACTC 59.785 57.895 3.72 0.67 45.68 3.01
595 634 1.248785 CCATGCTTGCTGGCAACTCT 61.249 55.000 3.72 0.00 45.68 3.24
596 635 0.109272 CATGCTTGCTGGCAACTCTG 60.109 55.000 3.72 0.00 45.68 3.35
597 636 0.538977 ATGCTTGCTGGCAACTCTGT 60.539 50.000 3.72 0.00 45.68 3.41
598 637 1.285023 GCTTGCTGGCAACTCTGTG 59.715 57.895 3.72 0.00 37.61 3.66
599 638 1.954528 CTTGCTGGCAACTCTGTGG 59.045 57.895 3.72 0.00 37.61 4.17
600 639 1.521450 CTTGCTGGCAACTCTGTGGG 61.521 60.000 3.72 0.00 37.61 4.61
601 640 3.368571 GCTGGCAACTCTGTGGGC 61.369 66.667 0.00 0.00 32.25 5.36
602 641 2.113774 CTGGCAACTCTGTGGGCA 59.886 61.111 1.50 1.50 39.76 5.36
603 642 2.113774 TGGCAACTCTGTGGGCAG 59.886 61.111 0.00 0.00 37.11 4.85
604 643 3.368571 GGCAACTCTGTGGGCAGC 61.369 66.667 0.00 0.00 42.29 5.25
605 644 3.368571 GCAACTCTGTGGGCAGCC 61.369 66.667 1.26 1.26 42.29 4.85
606 645 2.433446 CAACTCTGTGGGCAGCCT 59.567 61.111 12.43 0.00 42.29 4.58
607 646 1.228367 CAACTCTGTGGGCAGCCTT 60.228 57.895 12.43 0.00 42.29 4.35
608 647 1.228367 AACTCTGTGGGCAGCCTTG 60.228 57.895 12.43 0.00 42.29 3.61
617 656 3.435590 GCAGCCTTGCTTGTGTCA 58.564 55.556 0.00 0.00 46.95 3.58
618 657 1.962144 GCAGCCTTGCTTGTGTCAT 59.038 52.632 0.00 0.00 46.95 3.06
619 658 0.316204 GCAGCCTTGCTTGTGTCATT 59.684 50.000 0.00 0.00 46.95 2.57
620 659 1.933500 GCAGCCTTGCTTGTGTCATTG 60.934 52.381 0.00 0.00 46.95 2.82
621 660 0.316204 AGCCTTGCTTGTGTCATTGC 59.684 50.000 0.00 0.00 33.89 3.56
622 661 0.668401 GCCTTGCTTGTGTCATTGCC 60.668 55.000 0.00 0.00 0.00 4.52
623 662 0.675083 CCTTGCTTGTGTCATTGCCA 59.325 50.000 0.00 0.00 0.00 4.92
624 663 1.603678 CCTTGCTTGTGTCATTGCCAC 60.604 52.381 0.00 0.00 0.00 5.01
625 664 0.388659 TTGCTTGTGTCATTGCCACC 59.611 50.000 0.00 0.00 31.71 4.61
626 665 0.467844 TGCTTGTGTCATTGCCACCT 60.468 50.000 0.00 0.00 31.71 4.00
627 666 0.242017 GCTTGTGTCATTGCCACCTC 59.758 55.000 0.00 0.00 31.71 3.85
628 667 0.518636 CTTGTGTCATTGCCACCTCG 59.481 55.000 0.00 0.00 31.71 4.63
629 668 0.888736 TTGTGTCATTGCCACCTCGG 60.889 55.000 0.00 0.00 38.11 4.63
630 669 2.040544 GTGTCATTGCCACCTCGGG 61.041 63.158 0.00 0.00 34.06 5.14
631 670 2.351276 GTCATTGCCACCTCGGGT 59.649 61.111 0.00 0.00 35.62 5.28
632 671 1.303317 GTCATTGCCACCTCGGGTT 60.303 57.895 0.00 0.00 31.02 4.11
633 672 0.035820 GTCATTGCCACCTCGGGTTA 60.036 55.000 0.00 0.00 31.02 2.85
634 673 0.251916 TCATTGCCACCTCGGGTTAG 59.748 55.000 0.00 0.00 31.02 2.34
635 674 0.251916 CATTGCCACCTCGGGTTAGA 59.748 55.000 0.00 0.00 31.02 2.10
636 675 0.252197 ATTGCCACCTCGGGTTAGAC 59.748 55.000 0.00 0.00 31.02 2.59
637 676 1.122632 TTGCCACCTCGGGTTAGACA 61.123 55.000 0.00 0.00 31.02 3.41
638 677 1.122632 TGCCACCTCGGGTTAGACAA 61.123 55.000 0.00 0.00 31.02 3.18
639 678 0.252197 GCCACCTCGGGTTAGACAAT 59.748 55.000 0.00 0.00 31.02 2.71
640 679 1.339727 GCCACCTCGGGTTAGACAATT 60.340 52.381 0.00 0.00 31.02 2.32
641 680 2.356135 CCACCTCGGGTTAGACAATTG 58.644 52.381 3.24 3.24 31.02 2.32
642 681 1.737793 CACCTCGGGTTAGACAATTGC 59.262 52.381 5.05 0.00 31.02 3.56
643 682 1.349688 ACCTCGGGTTAGACAATTGCA 59.650 47.619 5.05 0.00 27.29 4.08
644 683 1.737793 CCTCGGGTTAGACAATTGCAC 59.262 52.381 5.05 0.00 0.00 4.57
645 684 2.422597 CTCGGGTTAGACAATTGCACA 58.577 47.619 5.05 0.00 0.00 4.57
646 685 3.009723 CTCGGGTTAGACAATTGCACAT 58.990 45.455 5.05 0.00 0.00 3.21
647 686 2.746904 TCGGGTTAGACAATTGCACATG 59.253 45.455 5.05 0.00 0.00 3.21
648 687 2.487762 CGGGTTAGACAATTGCACATGT 59.512 45.455 5.05 3.31 0.00 3.21
649 688 3.426159 CGGGTTAGACAATTGCACATGTC 60.426 47.826 18.82 18.82 44.92 3.06
657 696 4.923893 ACAATTGCACATGTCGAATATGG 58.076 39.130 5.05 5.79 0.00 2.74
658 697 4.639755 ACAATTGCACATGTCGAATATGGA 59.360 37.500 5.05 0.00 0.00 3.41
659 698 5.125257 ACAATTGCACATGTCGAATATGGAA 59.875 36.000 5.05 6.32 0.00 3.53
660 699 6.183360 ACAATTGCACATGTCGAATATGGAAT 60.183 34.615 5.05 8.04 33.38 3.01
661 700 7.013178 ACAATTGCACATGTCGAATATGGAATA 59.987 33.333 5.05 0.47 31.96 1.75
662 701 6.544038 TTGCACATGTCGAATATGGAATAG 57.456 37.500 13.56 2.41 28.50 1.73
663 702 5.610398 TGCACATGTCGAATATGGAATAGT 58.390 37.500 13.56 0.00 28.50 2.12
664 703 6.754193 TGCACATGTCGAATATGGAATAGTA 58.246 36.000 13.56 0.00 28.50 1.82
665 704 7.213678 TGCACATGTCGAATATGGAATAGTAA 58.786 34.615 13.56 0.00 28.50 2.24
666 705 7.170828 TGCACATGTCGAATATGGAATAGTAAC 59.829 37.037 13.56 0.00 28.50 2.50
667 706 7.385205 GCACATGTCGAATATGGAATAGTAACT 59.615 37.037 13.56 0.00 28.50 2.24
668 707 8.916654 CACATGTCGAATATGGAATAGTAACTC 58.083 37.037 13.56 0.00 28.50 3.01
669 708 8.861086 ACATGTCGAATATGGAATAGTAACTCT 58.139 33.333 13.56 0.00 28.50 3.24
670 709 9.133627 CATGTCGAATATGGAATAGTAACTCTG 57.866 37.037 0.00 0.00 28.50 3.35
671 710 8.234136 TGTCGAATATGGAATAGTAACTCTGT 57.766 34.615 0.00 0.00 28.50 3.41
672 711 9.346005 TGTCGAATATGGAATAGTAACTCTGTA 57.654 33.333 0.00 0.00 28.50 2.74
673 712 9.828852 GTCGAATATGGAATAGTAACTCTGTAG 57.171 37.037 0.00 0.00 28.50 2.74
674 713 8.512956 TCGAATATGGAATAGTAACTCTGTAGC 58.487 37.037 0.00 0.00 28.50 3.58
675 714 8.516234 CGAATATGGAATAGTAACTCTGTAGCT 58.484 37.037 0.00 0.00 28.50 3.32
676 715 9.632807 GAATATGGAATAGTAACTCTGTAGCTG 57.367 37.037 0.00 0.00 28.50 4.24
677 716 5.854010 TGGAATAGTAACTCTGTAGCTGG 57.146 43.478 0.00 0.00 0.00 4.85
678 717 5.269991 TGGAATAGTAACTCTGTAGCTGGT 58.730 41.667 0.00 0.00 0.00 4.00
679 718 5.720041 TGGAATAGTAACTCTGTAGCTGGTT 59.280 40.000 0.00 0.00 0.00 3.67
680 719 6.127423 TGGAATAGTAACTCTGTAGCTGGTTC 60.127 42.308 0.00 0.00 0.00 3.62
681 720 6.097129 GGAATAGTAACTCTGTAGCTGGTTCT 59.903 42.308 0.00 0.00 0.00 3.01
682 721 4.792521 AGTAACTCTGTAGCTGGTTCTG 57.207 45.455 0.00 0.00 0.00 3.02
683 722 4.408276 AGTAACTCTGTAGCTGGTTCTGA 58.592 43.478 0.00 0.00 0.00 3.27
684 723 4.833380 AGTAACTCTGTAGCTGGTTCTGAA 59.167 41.667 0.00 0.00 0.00 3.02
685 724 3.951775 ACTCTGTAGCTGGTTCTGAAG 57.048 47.619 0.00 0.00 0.00 3.02
686 725 3.501349 ACTCTGTAGCTGGTTCTGAAGA 58.499 45.455 0.00 0.00 0.00 2.87
687 726 3.898123 ACTCTGTAGCTGGTTCTGAAGAA 59.102 43.478 0.00 0.00 0.00 2.52
688 727 4.530161 ACTCTGTAGCTGGTTCTGAAGAAT 59.470 41.667 0.00 0.00 36.33 2.40
689 728 4.825422 TCTGTAGCTGGTTCTGAAGAATG 58.175 43.478 0.00 0.00 36.33 2.67
690 729 4.528206 TCTGTAGCTGGTTCTGAAGAATGA 59.472 41.667 0.00 0.00 36.33 2.57
691 730 5.188555 TCTGTAGCTGGTTCTGAAGAATGAT 59.811 40.000 0.00 0.00 36.33 2.45
692 731 5.809001 TGTAGCTGGTTCTGAAGAATGATT 58.191 37.500 0.00 0.00 36.33 2.57
693 732 6.240894 TGTAGCTGGTTCTGAAGAATGATTT 58.759 36.000 0.00 0.00 36.33 2.17
694 733 6.716628 TGTAGCTGGTTCTGAAGAATGATTTT 59.283 34.615 0.00 0.00 36.33 1.82
695 734 6.022163 AGCTGGTTCTGAAGAATGATTTTG 57.978 37.500 0.00 0.00 36.33 2.44
696 735 4.624452 GCTGGTTCTGAAGAATGATTTTGC 59.376 41.667 0.00 0.00 36.33 3.68
697 736 5.775686 CTGGTTCTGAAGAATGATTTTGCA 58.224 37.500 0.00 0.00 36.33 4.08
698 737 5.775686 TGGTTCTGAAGAATGATTTTGCAG 58.224 37.500 0.00 0.00 36.33 4.41
699 738 4.624452 GGTTCTGAAGAATGATTTTGCAGC 59.376 41.667 0.00 0.00 36.33 5.25
700 739 5.467705 GTTCTGAAGAATGATTTTGCAGCT 58.532 37.500 0.00 0.00 36.33 4.24
701 740 5.055642 TCTGAAGAATGATTTTGCAGCTG 57.944 39.130 10.11 10.11 0.00 4.24
702 741 4.763279 TCTGAAGAATGATTTTGCAGCTGA 59.237 37.500 20.43 0.00 0.00 4.26
703 742 4.801891 TGAAGAATGATTTTGCAGCTGAC 58.198 39.130 20.43 9.67 0.00 3.51
704 743 4.278919 TGAAGAATGATTTTGCAGCTGACA 59.721 37.500 20.43 12.49 0.00 3.58
705 744 4.859304 AGAATGATTTTGCAGCTGACAA 57.141 36.364 20.43 17.91 0.00 3.18
706 745 4.553323 AGAATGATTTTGCAGCTGACAAC 58.447 39.130 20.43 9.90 0.00 3.32
707 746 4.280174 AGAATGATTTTGCAGCTGACAACT 59.720 37.500 20.43 10.72 0.00 3.16
708 747 3.631145 TGATTTTGCAGCTGACAACTC 57.369 42.857 20.43 17.96 0.00 3.01
709 748 3.216800 TGATTTTGCAGCTGACAACTCT 58.783 40.909 20.43 8.07 0.00 3.24
710 749 3.004002 TGATTTTGCAGCTGACAACTCTG 59.996 43.478 20.43 0.00 0.00 3.35
711 750 2.042686 TTTGCAGCTGACAACTCTGT 57.957 45.000 20.43 0.00 38.98 3.41
792 831 1.192803 ACTTCTTCACCCGGGAGTCC 61.193 60.000 32.02 0.00 0.00 3.85
905 967 0.532573 GATCCAGTTCTGGAGCGACA 59.467 55.000 23.14 3.38 41.88 4.35
959 1021 4.697756 CCGAAGCCTCCACCGCAA 62.698 66.667 0.00 0.00 0.00 4.85
977 1040 1.204704 CAACACATCCTCGTCAGGCTA 59.795 52.381 0.00 0.00 40.12 3.93
992 1055 3.006756 GCTACTGCTCGCCACCTCA 62.007 63.158 0.00 0.00 36.03 3.86
1089 1253 1.677637 GGGAGGTGGACGAGATGGTC 61.678 65.000 0.00 0.00 36.18 4.02
1179 1343 0.178767 ACACACTGCTGCTGAAGACA 59.821 50.000 13.69 0.00 0.00 3.41
1194 1367 1.214062 GACAGACCGGTGCTCAGAG 59.786 63.158 14.63 0.00 0.00 3.35
1291 1471 2.631428 GCGCGCTCAAAGTGTTCA 59.369 55.556 26.67 0.00 0.00 3.18
1294 1474 0.986874 CGCGCTCAAAGTGTTCAACG 60.987 55.000 5.56 0.00 0.00 4.10
1296 1476 1.915965 GCGCTCAAAGTGTTCAACGAC 60.916 52.381 0.00 0.00 0.00 4.34
1341 1521 6.183360 GGGTGTTAAGCTTTGTTGTTAACTCT 60.183 38.462 3.20 0.00 37.48 3.24
1355 1535 8.387354 TGTTGTTAACTCTTAATCATATGCACG 58.613 33.333 7.22 0.00 0.00 5.34
1358 1538 9.027129 TGTTAACTCTTAATCATATGCACGTAC 57.973 33.333 7.22 0.00 0.00 3.67
1363 1543 3.585748 AATCATATGCACGTACGCAAC 57.414 42.857 16.72 5.45 46.87 4.17
1370 1550 0.926628 GCACGTACGCAACCAAACAC 60.927 55.000 16.72 0.00 0.00 3.32
1372 1552 0.462403 ACGTACGCAACCAAACACCT 60.462 50.000 16.72 0.00 0.00 4.00
1390 1573 4.142534 ACACCTGAAAATTGCATCTCGATG 60.143 41.667 2.57 2.57 41.60 3.84
1399 1582 1.134699 TGCATCTCGATGACAAGACCC 60.135 52.381 10.91 0.00 41.20 4.46
1413 1596 0.034089 AGACCCCTAATGCAGGCAAC 60.034 55.000 0.00 0.00 43.98 4.17
1421 1604 2.460757 AATGCAGGCAACCAATCAAC 57.539 45.000 0.00 0.00 37.17 3.18
1425 1608 0.037975 CAGGCAACCAATCAACTGGC 60.038 55.000 0.00 0.00 40.45 4.85
1433 1616 1.942657 CCAATCAACTGGCCATCTACG 59.057 52.381 5.51 0.00 0.00 3.51
1445 1628 1.472480 CCATCTACGTTTTTGGCCCTG 59.528 52.381 0.00 0.00 0.00 4.45
1446 1629 2.159382 CATCTACGTTTTTGGCCCTGT 58.841 47.619 0.00 0.00 0.00 4.00
1469 1652 1.140134 TTCCTTAACCAGGCCCTGCT 61.140 55.000 4.81 0.00 43.55 4.24
1471 1654 1.450312 CTTAACCAGGCCCTGCTCG 60.450 63.158 4.81 0.00 0.00 5.03
1476 1659 3.790437 CAGGCCCTGCTCGGTCAT 61.790 66.667 0.00 0.00 0.00 3.06
1477 1660 3.474570 AGGCCCTGCTCGGTCATC 61.475 66.667 0.00 0.00 0.00 2.92
1478 1661 3.474570 GGCCCTGCTCGGTCATCT 61.475 66.667 0.00 0.00 0.00 2.90
1479 1662 2.202987 GCCCTGCTCGGTCATCTG 60.203 66.667 0.00 0.00 0.00 2.90
1480 1663 2.503061 CCCTGCTCGGTCATCTGG 59.497 66.667 0.00 0.00 0.00 3.86
1481 1664 2.202987 CCTGCTCGGTCATCTGGC 60.203 66.667 0.00 0.00 0.00 4.85
1483 1666 1.227205 CTGCTCGGTCATCTGGCTC 60.227 63.158 0.00 0.00 0.00 4.70
1484 1667 2.279120 GCTCGGTCATCTGGCTCG 60.279 66.667 0.00 0.00 0.00 5.03
1485 1668 3.069980 GCTCGGTCATCTGGCTCGT 62.070 63.158 0.00 0.00 0.00 4.18
1486 1669 1.513158 CTCGGTCATCTGGCTCGTT 59.487 57.895 0.00 0.00 0.00 3.85
1487 1670 0.108615 CTCGGTCATCTGGCTCGTTT 60.109 55.000 0.00 0.00 0.00 3.60
1488 1671 0.389817 TCGGTCATCTGGCTCGTTTG 60.390 55.000 0.00 0.00 0.00 2.93
1510 1693 2.041922 TCTCCTAGCCATGCCCGT 60.042 61.111 0.00 0.00 0.00 5.28
1528 1711 3.824443 CCCGTTGGAGAAACTAACCAAAT 59.176 43.478 0.00 0.00 43.74 2.32
1536 1719 1.089112 AACTAACCAAATACGCCCGC 58.911 50.000 0.00 0.00 0.00 6.13
1537 1720 0.251073 ACTAACCAAATACGCCCGCT 59.749 50.000 0.00 0.00 0.00 5.52
1538 1721 0.655733 CTAACCAAATACGCCCGCTG 59.344 55.000 0.00 0.00 0.00 5.18
1539 1722 0.036199 TAACCAAATACGCCCGCTGT 60.036 50.000 0.00 0.00 0.00 4.40
1540 1723 1.582610 AACCAAATACGCCCGCTGTG 61.583 55.000 0.00 0.00 0.00 3.66
1541 1724 2.038269 CCAAATACGCCCGCTGTGT 61.038 57.895 0.00 0.00 41.55 3.72
1542 1725 1.582610 CCAAATACGCCCGCTGTGTT 61.583 55.000 0.00 0.00 38.91 3.32
1543 1726 0.239879 CAAATACGCCCGCTGTGTTT 59.760 50.000 0.00 2.43 38.91 2.83
1544 1727 0.239879 AAATACGCCCGCTGTGTTTG 59.760 50.000 5.92 0.00 38.91 2.93
1545 1728 0.887387 AATACGCCCGCTGTGTTTGT 60.887 50.000 0.00 0.00 38.91 2.83
1546 1729 0.887387 ATACGCCCGCTGTGTTTGTT 60.887 50.000 0.00 0.00 38.91 2.83
1547 1730 1.500512 TACGCCCGCTGTGTTTGTTC 61.501 55.000 0.00 0.00 38.91 3.18
1548 1731 2.542907 CGCCCGCTGTGTTTGTTCT 61.543 57.895 0.00 0.00 0.00 3.01
1549 1732 1.008538 GCCCGCTGTGTTTGTTCTG 60.009 57.895 0.00 0.00 0.00 3.02
1550 1733 1.008538 CCCGCTGTGTTTGTTCTGC 60.009 57.895 0.00 0.00 0.00 4.26
1551 1734 1.723608 CCCGCTGTGTTTGTTCTGCA 61.724 55.000 0.00 0.00 0.00 4.41
1552 1735 0.592247 CCGCTGTGTTTGTTCTGCAC 60.592 55.000 0.00 0.00 0.00 4.57
1553 1736 0.378257 CGCTGTGTTTGTTCTGCACT 59.622 50.000 0.00 0.00 34.52 4.40
1554 1737 1.202177 CGCTGTGTTTGTTCTGCACTT 60.202 47.619 0.00 0.00 34.52 3.16
1555 1738 2.454055 GCTGTGTTTGTTCTGCACTTC 58.546 47.619 0.00 0.00 34.52 3.01
1556 1739 2.098117 GCTGTGTTTGTTCTGCACTTCT 59.902 45.455 0.00 0.00 34.52 2.85
1557 1740 3.688272 CTGTGTTTGTTCTGCACTTCTG 58.312 45.455 0.00 0.00 34.52 3.02
1558 1741 2.159393 TGTGTTTGTTCTGCACTTCTGC 60.159 45.455 0.00 0.00 44.52 4.26
1559 1742 2.098117 GTGTTTGTTCTGCACTTCTGCT 59.902 45.455 0.00 0.00 44.57 4.24
1560 1743 3.312421 GTGTTTGTTCTGCACTTCTGCTA 59.688 43.478 0.00 0.00 44.57 3.49
1561 1744 3.561310 TGTTTGTTCTGCACTTCTGCTAG 59.439 43.478 0.00 0.00 44.57 3.42
1562 1745 2.462456 TGTTCTGCACTTCTGCTAGG 57.538 50.000 0.00 0.00 44.57 3.02
1563 1746 1.082690 GTTCTGCACTTCTGCTAGGC 58.917 55.000 0.00 0.00 44.57 3.93
1564 1747 0.686789 TTCTGCACTTCTGCTAGGCA 59.313 50.000 0.00 0.00 44.57 4.75
1582 1765 2.019948 CAGAGTATGCTTCTGCTGCA 57.980 50.000 0.88 0.88 44.95 4.41
1583 1766 1.934525 CAGAGTATGCTTCTGCTGCAG 59.065 52.381 23.31 23.31 44.04 4.41
1584 1767 1.829849 AGAGTATGCTTCTGCTGCAGA 59.170 47.619 27.35 27.35 44.04 4.26
1594 1777 2.610433 TCTGCTGCAGATAAACGACAG 58.390 47.619 27.35 12.44 35.39 3.51
1599 1782 4.119862 GCTGCAGATAAACGACAGGAATA 58.880 43.478 20.43 0.00 0.00 1.75
1600 1783 4.025647 GCTGCAGATAAACGACAGGAATAC 60.026 45.833 20.43 0.00 0.00 1.89
1618 1801 5.065602 GGAATACTGGTTCATTCGGGTAAAC 59.934 44.000 0.00 0.00 32.92 2.01
1623 1806 3.057174 TGGTTCATTCGGGTAAACATTGC 60.057 43.478 0.00 0.00 0.00 3.56
1624 1807 3.192633 GGTTCATTCGGGTAAACATTGCT 59.807 43.478 0.00 0.00 0.00 3.91
1626 1809 5.448632 GGTTCATTCGGGTAAACATTGCTAG 60.449 44.000 0.00 0.00 0.00 3.42
1629 1812 3.965379 TCGGGTAAACATTGCTAGACA 57.035 42.857 0.00 0.00 0.00 3.41
1630 1813 4.481368 TCGGGTAAACATTGCTAGACAT 57.519 40.909 0.00 0.00 0.00 3.06
1633 1816 3.947834 GGGTAAACATTGCTAGACATGCT 59.052 43.478 0.00 0.00 0.00 3.79
1669 1852 1.000938 GCTGCTTCACTGAAACAAGGG 60.001 52.381 0.00 0.00 0.00 3.95
1670 1853 1.000938 CTGCTTCACTGAAACAAGGGC 60.001 52.381 0.00 0.00 0.00 5.19
1671 1854 1.032014 GCTTCACTGAAACAAGGGCA 58.968 50.000 0.00 0.00 0.00 5.36
1672 1855 1.408702 GCTTCACTGAAACAAGGGCAA 59.591 47.619 0.00 0.00 0.00 4.52
1673 1856 2.036346 GCTTCACTGAAACAAGGGCAAT 59.964 45.455 0.00 0.00 0.00 3.56
1674 1857 3.645884 CTTCACTGAAACAAGGGCAATG 58.354 45.455 0.00 0.00 0.00 2.82
1675 1858 1.340889 TCACTGAAACAAGGGCAATGC 59.659 47.619 0.00 0.00 0.00 3.56
1676 1859 0.314935 ACTGAAACAAGGGCAATGCG 59.685 50.000 0.00 0.00 0.00 4.73
1677 1860 1.006337 TGAAACAAGGGCAATGCGC 60.006 52.632 14.75 14.75 41.91 6.09
1679 1862 1.005867 AAACAAGGGCAATGCGCAG 60.006 52.632 23.85 17.30 44.06 5.18
1734 1917 0.968901 CCACCTAGTACACGGAGCCA 60.969 60.000 7.38 0.00 0.00 4.75
1775 1971 2.617274 GGGTCTCCGTTGCACTTGC 61.617 63.158 0.00 0.00 42.50 4.01
1781 1977 4.135570 CGTTGCACTTGCGGAATG 57.864 55.556 0.00 0.00 45.83 2.67
1785 1981 2.144833 TTGCACTTGCGGAATGGCTG 62.145 55.000 12.51 0.00 45.83 4.85
1791 1987 3.430862 GCGGAATGGCTGCGTCAA 61.431 61.111 0.00 0.00 41.66 3.18
1797 1993 0.674895 AATGGCTGCGTCAAGAGACC 60.675 55.000 0.00 0.00 41.87 3.85
1816 2012 0.812811 CATGATCACTCGCCACCTGG 60.813 60.000 0.00 0.00 38.53 4.45
1821 2017 2.203728 ACTCGCCACCTGGTACCA 60.204 61.111 15.39 15.39 37.57 3.25
1824 2020 3.319198 CGCCACCTGGTACCACCT 61.319 66.667 11.60 0.00 39.58 4.00
1825 2021 2.351276 GCCACCTGGTACCACCTG 59.649 66.667 11.60 8.75 39.58 4.00
1826 2022 2.351276 CCACCTGGTACCACCTGC 59.649 66.667 11.60 0.00 39.58 4.85
1827 2023 2.351276 CACCTGGTACCACCTGCC 59.649 66.667 11.60 0.00 39.58 4.85
1828 2024 3.319198 ACCTGGTACCACCTGCCG 61.319 66.667 11.60 0.00 39.58 5.69
1829 2025 4.778143 CCTGGTACCACCTGCCGC 62.778 72.222 11.60 0.00 39.58 6.53
1830 2026 4.015406 CTGGTACCACCTGCCGCA 62.015 66.667 11.60 0.00 39.58 5.69
1831 2027 4.323477 TGGTACCACCTGCCGCAC 62.323 66.667 11.60 0.00 39.58 5.34
1845 2041 4.889427 GCACCCAAGCGAAAATCC 57.111 55.556 0.00 0.00 0.00 3.01
1846 2042 1.963679 GCACCCAAGCGAAAATCCA 59.036 52.632 0.00 0.00 0.00 3.41
1847 2043 0.388520 GCACCCAAGCGAAAATCCAC 60.389 55.000 0.00 0.00 0.00 4.02
1852 2048 2.083774 CCAAGCGAAAATCCACAGCTA 58.916 47.619 0.00 0.00 37.15 3.32
1862 2058 6.575162 AAAATCCACAGCTAAACCTAACAG 57.425 37.500 0.00 0.00 0.00 3.16
1884 2080 0.370273 CACGCGCCACAGTAAGAATC 59.630 55.000 5.73 0.00 0.00 2.52
1886 2082 1.290203 CGCGCCACAGTAAGAATCAT 58.710 50.000 0.00 0.00 0.00 2.45
1890 2086 2.282555 CGCCACAGTAAGAATCATCGTG 59.717 50.000 0.00 0.00 0.00 4.35
1891 2087 2.030946 GCCACAGTAAGAATCATCGTGC 59.969 50.000 0.00 0.00 0.00 5.34
1892 2088 3.525537 CCACAGTAAGAATCATCGTGCT 58.474 45.455 0.00 0.00 30.76 4.40
1893 2089 3.935203 CCACAGTAAGAATCATCGTGCTT 59.065 43.478 0.00 0.00 28.36 3.91
1894 2090 4.393062 CCACAGTAAGAATCATCGTGCTTT 59.607 41.667 0.00 0.00 28.36 3.51
1896 2092 6.373779 CACAGTAAGAATCATCGTGCTTTTT 58.626 36.000 0.00 0.00 28.36 1.94
1898 2094 8.015087 CACAGTAAGAATCATCGTGCTTTTTAA 58.985 33.333 0.00 0.00 28.36 1.52
1899 2095 8.564574 ACAGTAAGAATCATCGTGCTTTTTAAA 58.435 29.630 0.00 0.00 28.36 1.52
1900 2096 9.055248 CAGTAAGAATCATCGTGCTTTTTAAAG 57.945 33.333 0.00 0.00 39.03 1.85
1901 2097 8.999431 AGTAAGAATCATCGTGCTTTTTAAAGA 58.001 29.630 6.41 0.00 38.28 2.52
1903 2099 7.672983 AGAATCATCGTGCTTTTTAAAGAGA 57.327 32.000 9.82 2.99 38.28 3.10
1908 2104 7.298122 TCATCGTGCTTTTTAAAGAGATTGTC 58.702 34.615 9.82 0.00 38.28 3.18
1909 2105 6.612247 TCGTGCTTTTTAAAGAGATTGTCA 57.388 33.333 9.82 0.00 38.28 3.58
1910 2106 7.202016 TCGTGCTTTTTAAAGAGATTGTCAT 57.798 32.000 9.82 0.00 38.28 3.06
1913 2109 6.865205 GTGCTTTTTAAAGAGATTGTCATGCT 59.135 34.615 9.82 0.00 38.28 3.79
1958 2154 7.225523 ACTTACACAGTATAAAATTACCGCG 57.774 36.000 0.00 0.00 31.97 6.46
1959 2155 6.813152 ACTTACACAGTATAAAATTACCGCGT 59.187 34.615 4.92 0.00 31.97 6.01
2016 2212 2.501008 GCGTTTTGCGGTAAGGCG 60.501 61.111 0.00 1.31 41.69 5.52
2022 2218 0.320858 TTTGCGGTAAGGCGATGTGA 60.321 50.000 0.00 0.00 35.06 3.58
2053 2249 0.531657 CAGAGCCAGTGGACAGAGAG 59.468 60.000 15.20 0.00 0.00 3.20
2054 2250 0.407528 AGAGCCAGTGGACAGAGAGA 59.592 55.000 15.20 0.00 0.00 3.10
2055 2251 1.203112 AGAGCCAGTGGACAGAGAGAA 60.203 52.381 15.20 0.00 0.00 2.87
2056 2252 1.620819 GAGCCAGTGGACAGAGAGAAA 59.379 52.381 15.20 0.00 0.00 2.52
2081 2277 1.066587 GTGAATCGGGAGAGGAGCG 59.933 63.158 0.00 0.00 45.48 5.03
2098 2295 1.740043 GCGTATCAACTCGCGTCCAC 61.740 60.000 5.77 0.00 42.79 4.02
2114 2311 2.203070 ACGGCCGATTGATCAGGC 60.203 61.111 35.90 14.57 42.02 4.85
2118 2315 1.819632 GCCGATTGATCAGGCCGTT 60.820 57.895 12.39 0.00 39.15 4.44
2151 2348 0.677731 TGGGCGCTGAAAGATTCCAG 60.678 55.000 7.64 0.00 34.07 3.86
2163 2360 2.876368 GATTCCAGGCTCCACCACCG 62.876 65.000 0.00 0.00 43.14 4.94
2208 2405 0.942252 CCGGCGTCTAATTTAAGCCC 59.058 55.000 6.01 0.00 44.56 5.19
2228 2425 4.899239 GCAGTGGCGATCCCGGAG 62.899 72.222 0.73 0.00 35.87 4.63
2298 2495 0.676782 CCACGGTGGAAGGATCAACC 60.677 60.000 22.77 0.00 45.11 3.77
2299 2496 0.676782 CACGGTGGAAGGATCAACCC 60.677 60.000 0.00 0.00 45.72 4.11
2300 2497 1.131303 ACGGTGGAAGGATCAACCCA 61.131 55.000 0.00 0.00 45.72 4.51
2301 2498 0.676782 CGGTGGAAGGATCAACCCAC 60.677 60.000 16.63 16.63 45.72 4.61
2302 2499 3.332190 CGGTGGAAGGATCAACCCACA 62.332 57.143 22.62 2.12 45.72 4.17
2303 2500 2.514458 GTGGAAGGATCAACCCACAT 57.486 50.000 18.78 0.00 46.13 3.21
2304 2501 2.094675 GTGGAAGGATCAACCCACATG 58.905 52.381 18.78 0.00 46.13 3.21
2305 2502 1.991813 TGGAAGGATCAACCCACATGA 59.008 47.619 0.00 0.00 40.05 3.07
2306 2503 2.290896 TGGAAGGATCAACCCACATGAC 60.291 50.000 0.00 0.00 40.05 3.06
2307 2504 2.369394 GAAGGATCAACCCACATGACC 58.631 52.381 0.00 0.00 40.05 4.02
2308 2505 1.673767 AGGATCAACCCACATGACCT 58.326 50.000 0.00 0.00 40.05 3.85
2309 2506 2.845659 AGGATCAACCCACATGACCTA 58.154 47.619 0.00 0.00 40.05 3.08
2310 2507 2.505819 AGGATCAACCCACATGACCTAC 59.494 50.000 0.00 0.00 40.05 3.18
2311 2508 2.421529 GGATCAACCCACATGACCTACC 60.422 54.545 0.00 0.00 0.00 3.18
2312 2509 2.038863 TCAACCCACATGACCTACCT 57.961 50.000 0.00 0.00 0.00 3.08
2313 2510 1.906574 TCAACCCACATGACCTACCTC 59.093 52.381 0.00 0.00 0.00 3.85
2314 2511 1.065418 CAACCCACATGACCTACCTCC 60.065 57.143 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.445410 CTGCCGATTCGACCGTTCA 60.445 57.895 7.83 3.17 0.00 3.18
12 13 4.609995 GGGAAACTGCCGATTCGA 57.390 55.556 7.83 0.00 0.00 3.71
106 107 3.837731 GGATTGAGGATTAGGGAGAGAGG 59.162 52.174 0.00 0.00 0.00 3.69
235 254 3.288290 CGCGAGGTAGAGGCCGAT 61.288 66.667 0.00 0.00 0.00 4.18
243 262 1.153978 TACAAACGGCGCGAGGTAG 60.154 57.895 12.10 5.57 0.00 3.18
245 264 2.735857 GTACAAACGGCGCGAGGT 60.736 61.111 12.10 2.71 0.00 3.85
299 318 4.373116 GGCGAGTTGAGGGCACGA 62.373 66.667 0.00 0.00 0.00 4.35
508 547 1.128692 GCACAAAACCGATCGAAGAGG 59.871 52.381 18.66 5.60 43.63 3.69
525 564 2.012673 CTAGGATCAACTGCTTGGCAC 58.987 52.381 0.00 0.00 33.79 5.01
526 565 1.908619 TCTAGGATCAACTGCTTGGCA 59.091 47.619 0.00 0.00 36.92 4.92
527 566 2.093235 ACTCTAGGATCAACTGCTTGGC 60.093 50.000 0.00 0.00 0.00 4.52
528 567 3.902881 ACTCTAGGATCAACTGCTTGG 57.097 47.619 0.00 0.00 0.00 3.61
529 568 5.083533 AGAACTCTAGGATCAACTGCTTG 57.916 43.478 0.00 0.00 0.00 4.01
530 569 5.486526 CAAGAACTCTAGGATCAACTGCTT 58.513 41.667 0.00 0.00 0.00 3.91
531 570 4.081198 CCAAGAACTCTAGGATCAACTGCT 60.081 45.833 0.00 0.00 0.00 4.24
532 571 4.081420 TCCAAGAACTCTAGGATCAACTGC 60.081 45.833 0.00 0.00 0.00 4.40
533 572 5.415221 GTCCAAGAACTCTAGGATCAACTG 58.585 45.833 0.00 0.00 31.91 3.16
534 573 4.158764 CGTCCAAGAACTCTAGGATCAACT 59.841 45.833 0.00 0.00 31.91 3.16
535 574 4.158025 TCGTCCAAGAACTCTAGGATCAAC 59.842 45.833 0.00 0.00 31.91 3.18
536 575 4.341487 TCGTCCAAGAACTCTAGGATCAA 58.659 43.478 0.00 0.00 31.91 2.57
537 576 3.948473 CTCGTCCAAGAACTCTAGGATCA 59.052 47.826 0.00 0.00 31.91 2.92
538 577 3.316868 CCTCGTCCAAGAACTCTAGGATC 59.683 52.174 0.00 0.00 31.91 3.36
539 578 3.292460 CCTCGTCCAAGAACTCTAGGAT 58.708 50.000 0.00 0.00 31.91 3.24
540 579 2.041350 ACCTCGTCCAAGAACTCTAGGA 59.959 50.000 0.00 0.00 0.00 2.94
542 581 2.096174 CGACCTCGTCCAAGAACTCTAG 59.904 54.545 0.00 0.00 34.11 2.43
543 582 2.082231 CGACCTCGTCCAAGAACTCTA 58.918 52.381 0.00 0.00 34.11 2.43
544 583 0.882474 CGACCTCGTCCAAGAACTCT 59.118 55.000 0.00 0.00 34.11 3.24
545 584 3.403276 CGACCTCGTCCAAGAACTC 57.597 57.895 0.00 0.00 34.11 3.01
556 595 2.504244 GGCGTCTTGACGACCTCG 60.504 66.667 24.65 0.00 46.33 4.63
560 599 2.737376 GGTGGGCGTCTTGACGAC 60.737 66.667 24.65 22.15 41.09 4.34
561 600 2.579657 ATGGTGGGCGTCTTGACGA 61.580 57.895 24.65 5.05 34.64 4.20
562 601 2.047274 ATGGTGGGCGTCTTGACG 60.047 61.111 17.53 17.53 0.00 4.35
563 602 2.690778 GCATGGTGGGCGTCTTGAC 61.691 63.158 0.00 0.00 0.00 3.18
564 603 2.359850 GCATGGTGGGCGTCTTGA 60.360 61.111 0.00 0.00 0.00 3.02
565 604 1.973281 AAGCATGGTGGGCGTCTTG 60.973 57.895 0.00 0.00 36.08 3.02
566 605 1.973281 CAAGCATGGTGGGCGTCTT 60.973 57.895 0.00 0.00 36.08 3.01
567 606 2.360350 CAAGCATGGTGGGCGTCT 60.360 61.111 0.00 0.00 36.08 4.18
568 607 4.120331 GCAAGCATGGTGGGCGTC 62.120 66.667 0.00 0.00 36.08 5.19
569 608 4.666253 AGCAAGCATGGTGGGCGT 62.666 61.111 13.95 3.19 35.55 5.68
575 614 1.530013 GAGTTGCCAGCAAGCATGGT 61.530 55.000 5.07 0.00 43.64 3.55
576 615 1.214589 GAGTTGCCAGCAAGCATGG 59.785 57.895 5.07 0.71 43.64 3.66
577 616 0.109272 CAGAGTTGCCAGCAAGCATG 60.109 55.000 5.07 1.10 43.64 4.06
578 617 0.538977 ACAGAGTTGCCAGCAAGCAT 60.539 50.000 5.07 0.00 43.64 3.79
579 618 1.152902 ACAGAGTTGCCAGCAAGCA 60.153 52.632 5.07 0.00 42.17 3.91
580 619 1.285023 CACAGAGTTGCCAGCAAGC 59.715 57.895 5.07 1.25 36.52 4.01
581 620 1.521450 CCCACAGAGTTGCCAGCAAG 61.521 60.000 5.07 0.00 36.52 4.01
582 621 1.529010 CCCACAGAGTTGCCAGCAA 60.529 57.895 0.00 0.00 0.00 3.91
583 622 2.113774 CCCACAGAGTTGCCAGCA 59.886 61.111 0.00 0.00 0.00 4.41
584 623 3.368571 GCCCACAGAGTTGCCAGC 61.369 66.667 0.00 0.00 0.00 4.85
585 624 2.113774 TGCCCACAGAGTTGCCAG 59.886 61.111 0.00 0.00 0.00 4.85
601 640 1.933500 GCAATGACACAAGCAAGGCTG 60.934 52.381 0.00 0.00 39.62 4.85
602 641 0.316204 GCAATGACACAAGCAAGGCT 59.684 50.000 0.00 0.00 42.56 4.58
603 642 0.668401 GGCAATGACACAAGCAAGGC 60.668 55.000 0.00 0.00 0.00 4.35
604 643 0.675083 TGGCAATGACACAAGCAAGG 59.325 50.000 0.00 0.00 0.00 3.61
605 644 1.603678 GGTGGCAATGACACAAGCAAG 60.604 52.381 21.92 0.00 44.59 4.01
606 645 0.388659 GGTGGCAATGACACAAGCAA 59.611 50.000 21.92 0.00 44.59 3.91
607 646 0.467844 AGGTGGCAATGACACAAGCA 60.468 50.000 21.92 0.00 44.59 3.91
608 647 0.242017 GAGGTGGCAATGACACAAGC 59.758 55.000 21.92 3.55 44.59 4.01
609 648 0.518636 CGAGGTGGCAATGACACAAG 59.481 55.000 21.92 7.47 44.59 3.16
610 649 0.888736 CCGAGGTGGCAATGACACAA 60.889 55.000 21.92 0.00 44.59 3.33
611 650 1.302431 CCGAGGTGGCAATGACACA 60.302 57.895 21.92 0.00 44.59 3.72
612 651 2.040544 CCCGAGGTGGCAATGACAC 61.041 63.158 11.47 11.47 41.56 3.67
613 652 2.063015 AACCCGAGGTGGCAATGACA 62.063 55.000 0.00 0.00 35.34 3.58
614 653 0.035820 TAACCCGAGGTGGCAATGAC 60.036 55.000 0.00 0.00 35.34 3.06
615 654 0.251916 CTAACCCGAGGTGGCAATGA 59.748 55.000 0.00 0.00 35.34 2.57
616 655 0.251916 TCTAACCCGAGGTGGCAATG 59.748 55.000 0.00 0.00 35.34 2.82
617 656 0.252197 GTCTAACCCGAGGTGGCAAT 59.748 55.000 0.00 0.00 35.34 3.56
618 657 1.122632 TGTCTAACCCGAGGTGGCAA 61.123 55.000 0.00 0.00 35.34 4.52
619 658 1.122632 TTGTCTAACCCGAGGTGGCA 61.123 55.000 0.00 0.00 35.34 4.92
620 659 0.252197 ATTGTCTAACCCGAGGTGGC 59.748 55.000 0.00 0.00 35.34 5.01
621 660 2.356135 CAATTGTCTAACCCGAGGTGG 58.644 52.381 0.00 0.00 35.34 4.61
622 661 1.737793 GCAATTGTCTAACCCGAGGTG 59.262 52.381 7.40 0.00 35.34 4.00
623 662 1.349688 TGCAATTGTCTAACCCGAGGT 59.650 47.619 7.40 0.00 37.65 3.85
624 663 1.737793 GTGCAATTGTCTAACCCGAGG 59.262 52.381 7.40 0.00 0.00 4.63
625 664 2.422597 TGTGCAATTGTCTAACCCGAG 58.577 47.619 7.40 0.00 0.00 4.63
626 665 2.552599 TGTGCAATTGTCTAACCCGA 57.447 45.000 7.40 0.00 0.00 5.14
627 666 2.487762 ACATGTGCAATTGTCTAACCCG 59.512 45.455 7.40 0.00 0.00 5.28
628 667 3.426159 CGACATGTGCAATTGTCTAACCC 60.426 47.826 21.41 2.85 40.05 4.11
629 668 3.435327 TCGACATGTGCAATTGTCTAACC 59.565 43.478 21.41 3.40 40.05 2.85
630 669 4.661993 TCGACATGTGCAATTGTCTAAC 57.338 40.909 21.41 1.96 40.05 2.34
631 670 5.878332 ATTCGACATGTGCAATTGTCTAA 57.122 34.783 21.41 18.30 40.05 2.10
632 671 6.018016 CCATATTCGACATGTGCAATTGTCTA 60.018 38.462 21.41 12.39 40.05 2.59
633 672 5.220912 CCATATTCGACATGTGCAATTGTCT 60.221 40.000 21.41 10.49 40.05 3.41
634 673 4.971830 CCATATTCGACATGTGCAATTGTC 59.028 41.667 16.57 16.57 39.07 3.18
635 674 4.639755 TCCATATTCGACATGTGCAATTGT 59.360 37.500 1.15 2.59 0.00 2.71
636 675 5.172460 TCCATATTCGACATGTGCAATTG 57.828 39.130 1.15 0.00 0.00 2.32
637 676 5.833406 TTCCATATTCGACATGTGCAATT 57.167 34.783 1.15 0.00 0.00 2.32
638 677 6.712095 ACTATTCCATATTCGACATGTGCAAT 59.288 34.615 1.15 3.47 0.00 3.56
639 678 6.054941 ACTATTCCATATTCGACATGTGCAA 58.945 36.000 1.15 0.00 0.00 4.08
640 679 5.610398 ACTATTCCATATTCGACATGTGCA 58.390 37.500 1.15 0.00 0.00 4.57
641 680 7.385205 AGTTACTATTCCATATTCGACATGTGC 59.615 37.037 1.15 0.00 0.00 4.57
642 681 8.818141 AGTTACTATTCCATATTCGACATGTG 57.182 34.615 1.15 0.00 0.00 3.21
643 682 8.861086 AGAGTTACTATTCCATATTCGACATGT 58.139 33.333 0.00 0.00 0.00 3.21
644 683 9.133627 CAGAGTTACTATTCCATATTCGACATG 57.866 37.037 0.00 0.00 0.00 3.21
645 684 8.861086 ACAGAGTTACTATTCCATATTCGACAT 58.139 33.333 0.00 0.00 0.00 3.06
646 685 8.234136 ACAGAGTTACTATTCCATATTCGACA 57.766 34.615 0.00 0.00 0.00 4.35
647 686 9.828852 CTACAGAGTTACTATTCCATATTCGAC 57.171 37.037 0.00 0.00 0.00 4.20
648 687 8.512956 GCTACAGAGTTACTATTCCATATTCGA 58.487 37.037 0.00 0.00 0.00 3.71
649 688 8.516234 AGCTACAGAGTTACTATTCCATATTCG 58.484 37.037 0.00 0.00 0.00 3.34
650 689 9.632807 CAGCTACAGAGTTACTATTCCATATTC 57.367 37.037 0.00 0.00 0.00 1.75
651 690 8.589338 CCAGCTACAGAGTTACTATTCCATATT 58.411 37.037 0.00 0.00 0.00 1.28
652 691 7.730784 ACCAGCTACAGAGTTACTATTCCATAT 59.269 37.037 0.00 0.00 0.00 1.78
653 692 7.067421 ACCAGCTACAGAGTTACTATTCCATA 58.933 38.462 0.00 0.00 0.00 2.74
654 693 5.900123 ACCAGCTACAGAGTTACTATTCCAT 59.100 40.000 0.00 0.00 0.00 3.41
655 694 5.269991 ACCAGCTACAGAGTTACTATTCCA 58.730 41.667 0.00 0.00 0.00 3.53
656 695 5.855740 ACCAGCTACAGAGTTACTATTCC 57.144 43.478 0.00 0.00 0.00 3.01
657 696 6.975772 CAGAACCAGCTACAGAGTTACTATTC 59.024 42.308 0.00 0.00 0.00 1.75
658 697 6.663953 TCAGAACCAGCTACAGAGTTACTATT 59.336 38.462 0.00 0.00 0.00 1.73
659 698 6.188407 TCAGAACCAGCTACAGAGTTACTAT 58.812 40.000 0.00 0.00 0.00 2.12
660 699 5.567430 TCAGAACCAGCTACAGAGTTACTA 58.433 41.667 0.00 0.00 0.00 1.82
661 700 4.408276 TCAGAACCAGCTACAGAGTTACT 58.592 43.478 0.00 0.00 0.00 2.24
662 701 4.785511 TCAGAACCAGCTACAGAGTTAC 57.214 45.455 0.00 0.00 0.00 2.50
663 702 5.077564 TCTTCAGAACCAGCTACAGAGTTA 58.922 41.667 0.00 0.00 0.00 2.24
664 703 3.898123 TCTTCAGAACCAGCTACAGAGTT 59.102 43.478 0.00 0.00 0.00 3.01
665 704 3.501349 TCTTCAGAACCAGCTACAGAGT 58.499 45.455 0.00 0.00 0.00 3.24
666 705 4.527509 TTCTTCAGAACCAGCTACAGAG 57.472 45.455 0.00 0.00 0.00 3.35
667 706 4.528206 TCATTCTTCAGAACCAGCTACAGA 59.472 41.667 0.00 0.00 36.80 3.41
668 707 4.825422 TCATTCTTCAGAACCAGCTACAG 58.175 43.478 0.00 0.00 36.80 2.74
669 708 4.890158 TCATTCTTCAGAACCAGCTACA 57.110 40.909 0.00 0.00 36.80 2.74
670 709 6.749923 AAATCATTCTTCAGAACCAGCTAC 57.250 37.500 0.00 0.00 36.80 3.58
671 710 6.349611 GCAAAATCATTCTTCAGAACCAGCTA 60.350 38.462 0.00 0.00 36.80 3.32
672 711 5.566230 GCAAAATCATTCTTCAGAACCAGCT 60.566 40.000 0.00 0.00 36.80 4.24
673 712 4.624452 GCAAAATCATTCTTCAGAACCAGC 59.376 41.667 0.00 0.00 36.80 4.85
674 713 5.775686 TGCAAAATCATTCTTCAGAACCAG 58.224 37.500 0.00 0.00 36.80 4.00
675 714 5.775686 CTGCAAAATCATTCTTCAGAACCA 58.224 37.500 0.00 0.00 36.80 3.67
676 715 4.624452 GCTGCAAAATCATTCTTCAGAACC 59.376 41.667 0.00 0.00 36.80 3.62
677 716 5.345202 CAGCTGCAAAATCATTCTTCAGAAC 59.655 40.000 0.00 0.00 36.80 3.01
678 717 5.242171 TCAGCTGCAAAATCATTCTTCAGAA 59.758 36.000 9.47 0.00 38.56 3.02
679 718 4.763279 TCAGCTGCAAAATCATTCTTCAGA 59.237 37.500 9.47 0.00 0.00 3.27
680 719 4.857588 GTCAGCTGCAAAATCATTCTTCAG 59.142 41.667 9.47 0.00 0.00 3.02
681 720 4.278919 TGTCAGCTGCAAAATCATTCTTCA 59.721 37.500 9.47 0.00 0.00 3.02
682 721 4.801891 TGTCAGCTGCAAAATCATTCTTC 58.198 39.130 9.47 0.00 0.00 2.87
683 722 4.859304 TGTCAGCTGCAAAATCATTCTT 57.141 36.364 9.47 0.00 0.00 2.52
684 723 4.280174 AGTTGTCAGCTGCAAAATCATTCT 59.720 37.500 20.27 11.43 0.00 2.40
685 724 4.553323 AGTTGTCAGCTGCAAAATCATTC 58.447 39.130 20.27 9.82 0.00 2.67
686 725 4.280174 AGAGTTGTCAGCTGCAAAATCATT 59.720 37.500 22.23 7.57 0.00 2.57
687 726 3.825014 AGAGTTGTCAGCTGCAAAATCAT 59.175 39.130 22.23 10.69 0.00 2.45
688 727 3.004002 CAGAGTTGTCAGCTGCAAAATCA 59.996 43.478 22.23 8.59 0.00 2.57
689 728 3.004106 ACAGAGTTGTCAGCTGCAAAATC 59.996 43.478 20.27 18.18 29.46 2.17
690 729 2.954318 ACAGAGTTGTCAGCTGCAAAAT 59.046 40.909 20.27 11.76 29.46 1.82
691 730 2.097954 CACAGAGTTGTCAGCTGCAAAA 59.902 45.455 20.27 7.99 34.62 2.44
692 731 1.672363 CACAGAGTTGTCAGCTGCAAA 59.328 47.619 20.27 10.21 34.62 3.68
693 732 1.302366 CACAGAGTTGTCAGCTGCAA 58.698 50.000 9.47 13.80 34.62 4.08
694 733 0.533531 CCACAGAGTTGTCAGCTGCA 60.534 55.000 9.47 7.85 34.62 4.41
695 734 1.233285 CCCACAGAGTTGTCAGCTGC 61.233 60.000 9.47 4.92 34.62 5.25
696 735 0.394192 TCCCACAGAGTTGTCAGCTG 59.606 55.000 7.63 7.63 34.62 4.24
697 736 1.131638 TTCCCACAGAGTTGTCAGCT 58.868 50.000 0.00 0.00 34.62 4.24
698 737 1.230324 GTTCCCACAGAGTTGTCAGC 58.770 55.000 0.00 0.00 34.62 4.26
699 738 1.543429 GGGTTCCCACAGAGTTGTCAG 60.543 57.143 2.59 0.00 34.62 3.51
700 739 0.472471 GGGTTCCCACAGAGTTGTCA 59.528 55.000 2.59 0.00 34.62 3.58
701 740 0.602905 CGGGTTCCCACAGAGTTGTC 60.603 60.000 8.70 0.00 34.62 3.18
702 741 1.450211 CGGGTTCCCACAGAGTTGT 59.550 57.895 8.70 0.00 38.31 3.32
703 742 1.302511 CCGGGTTCCCACAGAGTTG 60.303 63.158 8.70 0.00 0.00 3.16
704 743 1.765597 GACCGGGTTCCCACAGAGTT 61.766 60.000 6.32 0.00 0.00 3.01
705 744 2.122547 ACCGGGTTCCCACAGAGT 60.123 61.111 6.32 0.00 0.00 3.24
706 745 1.481056 AAGACCGGGTTCCCACAGAG 61.481 60.000 6.32 0.00 0.00 3.35
707 746 1.460689 AAGACCGGGTTCCCACAGA 60.461 57.895 6.32 0.00 0.00 3.41
708 747 1.003718 GAAGACCGGGTTCCCACAG 60.004 63.158 6.32 0.00 0.00 3.66
709 748 1.057851 AAGAAGACCGGGTTCCCACA 61.058 55.000 6.32 0.00 0.00 4.17
710 749 0.321387 GAAGAAGACCGGGTTCCCAC 60.321 60.000 6.32 0.00 0.00 4.61
711 750 1.823169 CGAAGAAGACCGGGTTCCCA 61.823 60.000 6.32 0.00 0.00 4.37
760 799 0.167689 AAGAAGTAGACGACGCCGAC 59.832 55.000 0.00 0.00 39.50 4.79
764 803 1.615502 GGTGAAGAAGTAGACGACGC 58.384 55.000 0.00 0.00 0.00 5.19
772 811 1.553706 GACTCCCGGGTGAAGAAGTA 58.446 55.000 28.83 0.40 0.00 2.24
890 952 1.734477 CGGTGTCGCTCCAGAACTG 60.734 63.158 0.00 0.00 0.00 3.16
959 1021 0.818296 GTAGCCTGACGAGGATGTGT 59.182 55.000 0.00 0.00 42.93 3.72
977 1040 2.601666 TCTGAGGTGGCGAGCAGT 60.602 61.111 0.00 0.00 0.00 4.40
1107 1271 1.153823 CTCCTCGCCGTCGAACATT 60.154 57.895 0.00 0.00 44.98 2.71
1179 1343 1.979693 GGACTCTGAGCACCGGTCT 60.980 63.158 2.59 4.97 0.00 3.85
1276 1456 0.303493 TCGTTGAACACTTTGAGCGC 59.697 50.000 0.00 0.00 0.00 5.92
1277 1457 1.326245 TGTCGTTGAACACTTTGAGCG 59.674 47.619 0.00 0.00 0.00 5.03
1291 1471 0.865769 GTTTGGCATCTCGTGTCGTT 59.134 50.000 0.00 0.00 34.28 3.85
1294 1474 0.798776 CAGGTTTGGCATCTCGTGTC 59.201 55.000 0.00 0.00 0.00 3.67
1296 1476 1.399440 CATCAGGTTTGGCATCTCGTG 59.601 52.381 0.00 0.00 0.00 4.35
1341 1521 4.025563 GGTTGCGTACGTGCATATGATTAA 60.026 41.667 17.90 0.00 45.78 1.40
1354 1534 0.041663 CAGGTGTTTGGTTGCGTACG 60.042 55.000 11.84 11.84 0.00 3.67
1355 1535 1.301423 TCAGGTGTTTGGTTGCGTAC 58.699 50.000 0.00 0.00 0.00 3.67
1358 1538 2.285827 TTTTCAGGTGTTTGGTTGCG 57.714 45.000 0.00 0.00 0.00 4.85
1363 1543 4.634199 AGATGCAATTTTCAGGTGTTTGG 58.366 39.130 0.00 0.00 0.00 3.28
1370 1550 4.095334 TGTCATCGAGATGCAATTTTCAGG 59.905 41.667 8.14 0.00 38.65 3.86
1372 1552 5.412286 TCTTGTCATCGAGATGCAATTTTCA 59.588 36.000 16.85 4.47 38.65 2.69
1390 1573 2.044123 CCTGCATTAGGGGTCTTGTC 57.956 55.000 0.00 0.00 43.33 3.18
1413 1596 1.942657 CGTAGATGGCCAGTTGATTGG 59.057 52.381 13.05 0.00 41.35 3.16
1421 1604 2.919666 CCAAAAACGTAGATGGCCAG 57.080 50.000 13.05 0.00 0.00 4.85
1425 1608 1.472480 CAGGGCCAAAAACGTAGATGG 59.528 52.381 6.18 8.61 36.00 3.51
1469 1652 0.389817 CAAACGAGCCAGATGACCGA 60.390 55.000 0.00 0.00 0.00 4.69
1471 1654 1.197721 CAACAAACGAGCCAGATGACC 59.802 52.381 0.00 0.00 0.00 4.02
1473 1656 0.874390 GCAACAAACGAGCCAGATGA 59.126 50.000 0.00 0.00 0.00 2.92
1475 1658 1.160137 GAGCAACAAACGAGCCAGAT 58.840 50.000 0.00 0.00 0.00 2.90
1476 1659 0.106708 AGAGCAACAAACGAGCCAGA 59.893 50.000 0.00 0.00 0.00 3.86
1477 1660 0.514691 GAGAGCAACAAACGAGCCAG 59.485 55.000 0.00 0.00 0.00 4.85
1478 1661 0.884704 GGAGAGCAACAAACGAGCCA 60.885 55.000 0.00 0.00 0.00 4.75
1479 1662 0.603975 AGGAGAGCAACAAACGAGCC 60.604 55.000 0.00 0.00 0.00 4.70
1480 1663 1.996191 CTAGGAGAGCAACAAACGAGC 59.004 52.381 0.00 0.00 0.00 5.03
1504 1687 1.543871 GGTTAGTTTCTCCAACGGGCA 60.544 52.381 0.00 0.00 40.75 5.36
1510 1693 4.456566 GGCGTATTTGGTTAGTTTCTCCAA 59.543 41.667 0.00 0.00 39.12 3.53
1528 1711 1.500512 GAACAAACACAGCGGGCGTA 61.501 55.000 0.00 0.00 0.00 4.42
1536 1719 3.688272 CAGAAGTGCAGAACAAACACAG 58.312 45.455 0.00 0.00 36.76 3.66
1537 1720 3.763097 CAGAAGTGCAGAACAAACACA 57.237 42.857 0.00 0.00 36.76 3.72
1563 1746 1.934525 CTGCAGCAGAAGCATACTCTG 59.065 52.381 18.42 0.00 45.49 3.35
1564 1747 1.829849 TCTGCAGCAGAAGCATACTCT 59.170 47.619 23.41 0.00 45.49 3.24
1565 1748 2.306341 TCTGCAGCAGAAGCATACTC 57.694 50.000 23.41 0.00 45.49 2.59
1566 1749 4.412796 TTATCTGCAGCAGAAGCATACT 57.587 40.909 28.78 13.03 44.04 2.12
1567 1750 4.551603 CGTTTATCTGCAGCAGAAGCATAC 60.552 45.833 28.78 19.01 44.04 2.39
1568 1751 3.557185 CGTTTATCTGCAGCAGAAGCATA 59.443 43.478 28.78 13.82 44.04 3.14
1569 1752 2.353889 CGTTTATCTGCAGCAGAAGCAT 59.646 45.455 28.78 14.88 44.04 3.79
1570 1753 1.733912 CGTTTATCTGCAGCAGAAGCA 59.266 47.619 28.78 14.16 44.04 3.91
1571 1754 2.002586 TCGTTTATCTGCAGCAGAAGC 58.997 47.619 28.78 14.29 44.04 3.86
1572 1755 2.995939 TGTCGTTTATCTGCAGCAGAAG 59.004 45.455 28.78 16.66 44.04 2.85
1573 1756 2.995939 CTGTCGTTTATCTGCAGCAGAA 59.004 45.455 28.78 15.06 44.04 3.02
1574 1757 2.610433 CTGTCGTTTATCTGCAGCAGA 58.390 47.619 27.37 27.37 44.99 4.26
1575 1758 1.662629 CCTGTCGTTTATCTGCAGCAG 59.337 52.381 17.10 17.10 0.00 4.24
1576 1759 1.275010 TCCTGTCGTTTATCTGCAGCA 59.725 47.619 9.47 0.00 0.00 4.41
1577 1760 2.010145 TCCTGTCGTTTATCTGCAGC 57.990 50.000 9.47 0.00 0.00 5.25
1578 1761 5.233050 CAGTATTCCTGTCGTTTATCTGCAG 59.767 44.000 7.63 7.63 36.37 4.41
1579 1762 5.109210 CAGTATTCCTGTCGTTTATCTGCA 58.891 41.667 0.00 0.00 36.37 4.41
1580 1763 4.508124 CCAGTATTCCTGTCGTTTATCTGC 59.492 45.833 0.00 0.00 39.74 4.26
1581 1764 5.661458 ACCAGTATTCCTGTCGTTTATCTG 58.339 41.667 0.00 0.00 39.74 2.90
1582 1765 5.934402 ACCAGTATTCCTGTCGTTTATCT 57.066 39.130 0.00 0.00 39.74 1.98
1583 1766 6.103997 TGAACCAGTATTCCTGTCGTTTATC 58.896 40.000 0.00 0.00 39.74 1.75
1584 1767 6.045072 TGAACCAGTATTCCTGTCGTTTAT 57.955 37.500 0.00 0.00 39.74 1.40
1594 1777 3.277142 ACCCGAATGAACCAGTATTCC 57.723 47.619 0.00 0.00 31.24 3.01
1599 1782 3.495434 TGTTTACCCGAATGAACCAGT 57.505 42.857 0.00 0.00 0.00 4.00
1600 1783 4.732784 CAATGTTTACCCGAATGAACCAG 58.267 43.478 0.00 0.00 0.00 4.00
1602 1785 3.192633 AGCAATGTTTACCCGAATGAACC 59.807 43.478 0.00 0.00 0.00 3.62
1605 1788 4.873827 GTCTAGCAATGTTTACCCGAATGA 59.126 41.667 0.00 0.00 0.00 2.57
1609 1792 3.965379 TGTCTAGCAATGTTTACCCGA 57.035 42.857 0.00 0.00 0.00 5.14
1618 1801 3.313526 GGTACCAAGCATGTCTAGCAATG 59.686 47.826 7.15 1.27 0.00 2.82
1623 1806 2.481449 GGTCGGTACCAAGCATGTCTAG 60.481 54.545 13.54 0.00 45.98 2.43
1624 1807 1.479323 GGTCGGTACCAAGCATGTCTA 59.521 52.381 13.54 0.00 45.98 2.59
1626 1809 2.763651 GGTCGGTACCAAGCATGTC 58.236 57.895 13.54 0.00 45.98 3.06
1654 1837 2.224018 GCATTGCCCTTGTTTCAGTGAA 60.224 45.455 0.08 0.08 0.00 3.18
1656 1839 1.787012 GCATTGCCCTTGTTTCAGTG 58.213 50.000 0.00 0.00 0.00 3.66
1677 1860 3.716006 CACCGTCAAGTGCCGCTG 61.716 66.667 0.00 0.00 0.00 5.18
1679 1862 3.712881 GACACCGTCAAGTGCCGC 61.713 66.667 0.00 0.00 41.67 6.53
1691 1874 2.484264 GCCACTGTGAGTATTTGACACC 59.516 50.000 9.86 0.00 34.18 4.16
1698 1881 1.656587 TGGGAGCCACTGTGAGTATT 58.343 50.000 9.86 0.00 0.00 1.89
1700 1883 4.966247 TGGGAGCCACTGTGAGTA 57.034 55.556 9.86 0.00 0.00 2.59
1720 1903 0.542467 TTGGGTGGCTCCGTGTACTA 60.542 55.000 0.00 0.00 37.00 1.82
1721 1904 1.827399 CTTGGGTGGCTCCGTGTACT 61.827 60.000 0.00 0.00 37.00 2.73
1722 1905 1.375523 CTTGGGTGGCTCCGTGTAC 60.376 63.158 0.00 0.00 37.00 2.90
1723 1906 2.589157 CCTTGGGTGGCTCCGTGTA 61.589 63.158 0.00 0.00 37.00 2.90
1775 1971 1.699656 CTCTTGACGCAGCCATTCCG 61.700 60.000 0.00 0.00 0.00 4.30
1781 1977 1.078848 ATGGTCTCTTGACGCAGCC 60.079 57.895 0.00 0.00 43.79 4.85
1785 1981 1.929836 GTGATCATGGTCTCTTGACGC 59.070 52.381 7.64 0.00 43.79 5.19
1786 1982 3.443037 GAGTGATCATGGTCTCTTGACG 58.557 50.000 11.67 0.00 43.79 4.35
1790 1986 1.137872 GGCGAGTGATCATGGTCTCTT 59.862 52.381 11.67 0.00 0.00 2.85
1791 1987 0.749649 GGCGAGTGATCATGGTCTCT 59.250 55.000 10.27 10.27 0.00 3.10
1797 1993 0.812811 CCAGGTGGCGAGTGATCATG 60.813 60.000 0.00 0.00 0.00 3.07
1828 2024 0.388520 GTGGATTTTCGCTTGGGTGC 60.389 55.000 0.00 0.00 0.00 5.01
1829 2025 0.958091 TGTGGATTTTCGCTTGGGTG 59.042 50.000 0.00 0.00 0.00 4.61
1830 2026 1.247567 CTGTGGATTTTCGCTTGGGT 58.752 50.000 0.00 0.00 0.00 4.51
1831 2027 0.109132 GCTGTGGATTTTCGCTTGGG 60.109 55.000 0.00 0.00 0.00 4.12
1837 2033 5.180492 TGTTAGGTTTAGCTGTGGATTTTCG 59.820 40.000 0.00 0.00 0.00 3.46
1845 2041 1.128692 GCGCTGTTAGGTTTAGCTGTG 59.871 52.381 0.00 0.00 35.36 3.66
1846 2042 1.270625 TGCGCTGTTAGGTTTAGCTGT 60.271 47.619 9.73 0.00 35.36 4.40
1847 2043 1.128692 GTGCGCTGTTAGGTTTAGCTG 59.871 52.381 9.73 0.00 35.36 4.24
1852 2048 2.943653 GCGTGCGCTGTTAGGTTT 59.056 55.556 9.73 0.00 38.26 3.27
1871 2067 3.525537 AGCACGATGATTCTTACTGTGG 58.474 45.455 0.00 0.00 0.00 4.17
1884 2080 7.077605 TGACAATCTCTTTAAAAAGCACGATG 58.922 34.615 0.00 0.00 35.99 3.84
1886 2082 6.612247 TGACAATCTCTTTAAAAAGCACGA 57.388 33.333 0.00 0.00 35.99 4.35
1890 2086 6.250104 CGAGCATGACAATCTCTTTAAAAAGC 59.750 38.462 0.00 0.00 35.99 3.51
1891 2087 7.269937 CACGAGCATGACAATCTCTTTAAAAAG 59.730 37.037 0.00 0.00 37.36 2.27
1892 2088 7.077605 CACGAGCATGACAATCTCTTTAAAAA 58.922 34.615 0.00 0.00 0.00 1.94
1893 2089 6.348458 CCACGAGCATGACAATCTCTTTAAAA 60.348 38.462 0.00 0.00 0.00 1.52
1894 2090 5.122239 CCACGAGCATGACAATCTCTTTAAA 59.878 40.000 0.00 0.00 0.00 1.52
1896 2092 4.183865 CCACGAGCATGACAATCTCTTTA 58.816 43.478 0.00 0.00 0.00 1.85
1898 2094 2.625737 CCACGAGCATGACAATCTCTT 58.374 47.619 0.00 0.00 0.00 2.85
1899 2095 1.741732 GCCACGAGCATGACAATCTCT 60.742 52.381 0.00 0.00 42.97 3.10
1900 2096 0.654683 GCCACGAGCATGACAATCTC 59.345 55.000 0.00 0.00 42.97 2.75
1901 2097 2.772739 GCCACGAGCATGACAATCT 58.227 52.632 0.00 0.00 42.97 2.40
1933 2129 8.338985 CGCGGTAATTTTATACTGTGTAAGTA 57.661 34.615 0.00 0.00 45.47 2.24
1934 2130 7.225523 CGCGGTAATTTTATACTGTGTAAGT 57.774 36.000 0.00 0.00 43.40 2.24
1939 2135 4.567558 TGGACGCGGTAATTTTATACTGTG 59.432 41.667 12.47 5.54 44.49 3.66
2005 2201 0.747852 TATCACATCGCCTTACCGCA 59.252 50.000 0.00 0.00 0.00 5.69
2016 2212 5.163814 GGCTCTGACACAAAACTATCACATC 60.164 44.000 0.00 0.00 0.00 3.06
2022 2218 4.067896 CACTGGCTCTGACACAAAACTAT 58.932 43.478 0.00 0.00 0.00 2.12
2062 2258 1.667154 CGCTCCTCTCCCGATTCACA 61.667 60.000 0.00 0.00 0.00 3.58
2068 2264 0.106868 TTGATACGCTCCTCTCCCGA 60.107 55.000 0.00 0.00 0.00 5.14
2138 2335 2.363683 GTGGAGCCTGGAATCTTTCAG 58.636 52.381 0.00 0.00 0.00 3.02
2191 2388 1.865340 CTCGGGCTTAAATTAGACGCC 59.135 52.381 0.00 0.00 39.98 5.68
2193 2390 2.540101 CTGCTCGGGCTTAAATTAGACG 59.460 50.000 9.62 0.00 39.59 4.18
2225 2422 4.825679 CCACCCTCCTCCCCCTCC 62.826 77.778 0.00 0.00 0.00 4.30
2247 2444 3.925362 TTCATGGGGCGACGTGACG 62.925 63.158 2.24 2.24 36.20 4.35
2248 2445 1.231958 TTTTCATGGGGCGACGTGAC 61.232 55.000 0.00 0.00 36.20 3.67
2249 2446 1.071642 TTTTCATGGGGCGACGTGA 59.928 52.632 0.00 0.00 34.74 4.35
2250 2447 1.209127 GTTTTCATGGGGCGACGTG 59.791 57.895 0.00 0.00 0.00 4.49
2251 2448 2.322081 CGTTTTCATGGGGCGACGT 61.322 57.895 0.00 0.00 0.00 4.34
2252 2449 1.570347 TTCGTTTTCATGGGGCGACG 61.570 55.000 0.00 0.00 0.00 5.12
2253 2450 0.168128 CTTCGTTTTCATGGGGCGAC 59.832 55.000 0.00 0.00 0.00 5.19
2254 2451 1.582610 GCTTCGTTTTCATGGGGCGA 61.583 55.000 0.00 0.00 0.00 5.54
2255 2452 1.154035 GCTTCGTTTTCATGGGGCG 60.154 57.895 0.00 0.00 0.00 6.13
2256 2453 1.215382 GGCTTCGTTTTCATGGGGC 59.785 57.895 0.00 0.00 0.00 5.80
2257 2454 1.506262 CGGCTTCGTTTTCATGGGG 59.494 57.895 0.00 0.00 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.