Multiple sequence alignment - TraesCS6A01G319300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G319300 chr6A 100.000 3869 0 0 1 3869 554823227 554827095 0.000000e+00 7145.0
1 TraesCS6A01G319300 chr6A 92.755 1532 94 13 1546 3066 564974999 564976524 0.000000e+00 2198.0
2 TraesCS6A01G319300 chr6A 92.559 1532 93 16 1545 3066 564910516 564908996 0.000000e+00 2178.0
3 TraesCS6A01G319300 chr6A 83.152 368 35 17 886 1233 564974626 564974986 1.040000e-80 311.0
4 TraesCS6A01G319300 chr6A 83.735 332 30 8 886 1194 564910899 564910569 3.780000e-75 292.0
5 TraesCS6A01G319300 chr6A 98.438 64 1 0 3477 3540 554826188 554826251 3.160000e-21 113.0
6 TraesCS6A01G319300 chr6A 96.875 64 1 1 3477 3540 564909100 564909038 5.290000e-19 106.0
7 TraesCS6A01G319300 chr6A 96.875 64 1 1 3477 3540 564976420 564976482 5.290000e-19 106.0
8 TraesCS6A01G319300 chr6A 95.312 64 2 1 3477 3540 564907809 564907747 2.460000e-17 100.0
9 TraesCS6A01G319300 chr6A 96.364 55 2 0 3815 3869 87272072 87272018 1.480000e-14 91.6
10 TraesCS6A01G319300 chr6D 90.603 3235 195 50 1 3183 409345683 409348860 0.000000e+00 4189.0
11 TraesCS6A01G319300 chr6D 93.820 1343 69 11 1546 2880 422190887 422192223 0.000000e+00 2008.0
12 TraesCS6A01G319300 chr6D 85.146 377 39 9 886 1247 422190511 422190885 1.700000e-98 370.0
13 TraesCS6A01G319300 chr6D 87.313 134 13 4 2935 3066 422203933 422203802 2.410000e-32 150.0
14 TraesCS6A01G319300 chr6D 98.438 64 1 0 3477 3540 409348634 409348697 3.160000e-21 113.0
15 TraesCS6A01G319300 chr6D 95.385 65 2 1 3477 3540 422192256 422192320 6.840000e-18 102.0
16 TraesCS6A01G319300 chr6B 94.750 1638 63 8 1559 3183 614582279 614583906 0.000000e+00 2527.0
17 TraesCS6A01G319300 chr6B 95.445 1471 61 4 1559 3025 614311911 614313379 0.000000e+00 2340.0
18 TraesCS6A01G319300 chr6B 95.051 1475 63 6 1559 3025 614437221 614438693 0.000000e+00 2311.0
19 TraesCS6A01G319300 chr6B 93.871 1338 71 8 1558 2889 636585725 636584393 0.000000e+00 2006.0
20 TraesCS6A01G319300 chr6B 93.556 1350 76 8 1548 2891 636491786 636493130 0.000000e+00 2001.0
21 TraesCS6A01G319300 chr6B 82.953 1226 103 40 1 1195 614310676 614311826 0.000000e+00 1009.0
22 TraesCS6A01G319300 chr6B 85.805 472 35 8 729 1195 614436692 614437136 4.520000e-129 472.0
23 TraesCS6A01G319300 chr6B 83.721 473 38 12 729 1195 614581755 614582194 1.000000e-110 411.0
24 TraesCS6A01G319300 chr6B 84.021 388 35 11 807 1188 636586154 636585788 7.960000e-92 348.0
25 TraesCS6A01G319300 chr6B 82.278 395 36 13 807 1195 636491361 636491727 1.040000e-80 311.0
26 TraesCS6A01G319300 chr6B 91.566 166 14 0 308 473 614436355 614436520 3.010000e-56 230.0
27 TraesCS6A01G319300 chr6B 87.368 190 14 7 115 303 614580779 614580959 3.920000e-50 209.0
28 TraesCS6A01G319300 chr6B 83.626 171 19 7 2935 3101 636584382 636584217 6.700000e-33 152.0
29 TraesCS6A01G319300 chr6B 94.845 97 3 2 2935 3030 636493140 636493235 2.410000e-32 150.0
30 TraesCS6A01G319300 chr6B 98.438 64 1 0 3477 3540 614583687 614583750 3.160000e-21 113.0
31 TraesCS6A01G319300 chr6B 96.875 64 1 1 3477 3540 636493168 636493230 5.290000e-19 106.0
32 TraesCS6A01G319300 chr6B 96.774 62 1 1 3477 3538 636584354 636584294 6.840000e-18 102.0
33 TraesCS6A01G319300 chr7D 81.896 823 138 9 1698 2513 493560567 493561385 0.000000e+00 684.0
34 TraesCS6A01G319300 chr7D 93.399 303 20 0 3175 3477 2487589 2487891 2.120000e-122 449.0
35 TraesCS6A01G319300 chr3D 95.130 308 15 0 3175 3482 599314193 599314500 1.620000e-133 486.0
36 TraesCS6A01G319300 chr3D 91.857 307 17 1 3175 3473 585232625 585232319 4.620000e-114 422.0
37 TraesCS6A01G319300 chr5B 94.481 308 17 0 3175 3482 678422891 678422584 3.500000e-130 475.0
38 TraesCS6A01G319300 chr2D 94.156 308 18 0 3175 3482 54665578 54665885 1.630000e-128 470.0
39 TraesCS6A01G319300 chr1B 94.576 295 16 0 3188 3482 576520492 576520198 1.270000e-124 457.0
40 TraesCS6A01G319300 chr1B 88.475 295 32 2 1247 1539 161567247 161566953 4.750000e-94 355.0
41 TraesCS6A01G319300 chr1B 87.797 295 34 2 1247 1539 161537583 161537289 1.030000e-90 344.0
42 TraesCS6A01G319300 chr1B 90.000 130 12 1 3633 3762 646858284 646858156 2.390000e-37 167.0
43 TraesCS6A01G319300 chr1B 100.000 50 0 0 3820 3869 41823264 41823313 4.120000e-15 93.5
44 TraesCS6A01G319300 chr1B 83.871 93 11 2 3547 3635 32772372 32772464 6.890000e-13 86.1
45 TraesCS6A01G319300 chr5D 93.464 306 19 1 3175 3480 345962139 345961835 1.640000e-123 453.0
46 TraesCS6A01G319300 chr1A 90.541 296 27 1 1249 1543 497195442 497195147 1.300000e-104 390.0
47 TraesCS6A01G319300 chr7A 89.933 298 28 2 1246 1541 503449071 503448774 2.180000e-102 383.0
48 TraesCS6A01G319300 chr7A 88.294 299 34 1 1244 1541 175240530 175240828 1.320000e-94 357.0
49 TraesCS6A01G319300 chr7A 87.829 304 36 1 1246 1548 732467285 732466982 4.750000e-94 355.0
50 TraesCS6A01G319300 chr7A 88.215 297 34 1 1246 1541 516145586 516145882 1.710000e-93 353.0
51 TraesCS6A01G319300 chr3A 89.701 301 30 1 1242 1541 137605368 137605068 2.180000e-102 383.0
52 TraesCS6A01G319300 chr3A 96.429 56 2 0 3814 3869 716969492 716969547 4.120000e-15 93.5
53 TraesCS6A01G319300 chr3A 94.828 58 2 1 3812 3869 411248910 411248966 5.320000e-14 89.8
54 TraesCS6A01G319300 chr1D 88.350 309 30 5 3175 3480 202547682 202547377 2.200000e-97 366.0
55 TraesCS6A01G319300 chr1D 87.108 287 35 1 3175 3461 117985020 117984736 1.340000e-84 324.0
56 TraesCS6A01G319300 chr7B 98.182 55 1 0 3815 3869 706194396 706194342 3.180000e-16 97.1
57 TraesCS6A01G319300 chr7B 85.714 91 9 2 3549 3635 679614990 679615080 4.120000e-15 93.5
58 TraesCS6A01G319300 chr5A 96.364 55 1 1 3815 3869 99589124 99589177 5.320000e-14 89.8
59 TraesCS6A01G319300 chr2B 91.045 67 3 3 3804 3869 229782040 229782104 1.910000e-13 87.9
60 TraesCS6A01G319300 chrUn 92.063 63 2 3 3808 3869 79251578 79251638 6.890000e-13 86.1
61 TraesCS6A01G319300 chrUn 92.063 63 2 3 3808 3869 372782264 372782324 6.890000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G319300 chr6A 554823227 554827095 3868 False 3629.000000 7145 99.219000 1 3869 2 chr6A.!!$F1 3868
1 TraesCS6A01G319300 chr6A 564974626 564976524 1898 False 871.666667 2198 90.927333 886 3540 3 chr6A.!!$F2 2654
2 TraesCS6A01G319300 chr6A 564907747 564910899 3152 True 669.000000 2178 92.120250 886 3540 4 chr6A.!!$R2 2654
3 TraesCS6A01G319300 chr6D 409345683 409348860 3177 False 2151.000000 4189 94.520500 1 3540 2 chr6D.!!$F1 3539
4 TraesCS6A01G319300 chr6D 422190511 422192320 1809 False 826.666667 2008 91.450333 886 3540 3 chr6D.!!$F2 2654
5 TraesCS6A01G319300 chr6B 614310676 614313379 2703 False 1674.500000 2340 89.199000 1 3025 2 chr6B.!!$F1 3024
6 TraesCS6A01G319300 chr6B 614436355 614438693 2338 False 1004.333333 2311 90.807333 308 3025 3 chr6B.!!$F2 2717
7 TraesCS6A01G319300 chr6B 614580779 614583906 3127 False 815.000000 2527 91.069250 115 3540 4 chr6B.!!$F3 3425
8 TraesCS6A01G319300 chr6B 636584217 636586154 1937 True 652.000000 2006 89.573000 807 3538 4 chr6B.!!$R1 2731
9 TraesCS6A01G319300 chr6B 636491361 636493235 1874 False 642.000000 2001 91.888500 807 3540 4 chr6B.!!$F4 2733
10 TraesCS6A01G319300 chr7D 493560567 493561385 818 False 684.000000 684 81.896000 1698 2513 1 chr7D.!!$F2 815

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
132 150 0.234884 CACGCTCTTCCGTTTGTTCC 59.765 55.0 0.00 0.00 39.83 3.62 F
661 752 0.313672 TTTTGCGGTTCATGAGGTGC 59.686 50.0 0.00 1.79 0.00 5.01 F
1081 1660 0.250038 GTCCTCTTGCAGAGCACACA 60.250 55.0 7.44 0.00 40.98 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1081 1660 0.108424 GCCATCGTCTTCAGCTCTGT 60.108 55.0 0.00 0.0 0.00 3.41 R
2637 3281 0.120377 TCTCCTCCTTAAGGCCCCAA 59.880 55.0 17.32 0.0 45.78 4.12 R
3097 3756 1.400737 ACCACTACTCCGGTATGCTC 58.599 55.0 0.00 0.0 32.31 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 134 1.267433 CGGTTCTACGTAGAGAGCACG 60.267 57.143 23.51 19.16 44.80 5.34
132 150 0.234884 CACGCTCTTCCGTTTGTTCC 59.765 55.000 0.00 0.00 39.83 3.62
154 172 3.745975 CGTTGAGTCAGTTGGATTTGCTA 59.254 43.478 0.00 0.00 0.00 3.49
212 230 2.195956 GCCTGCTTATCCCACCCC 59.804 66.667 0.00 0.00 0.00 4.95
215 233 0.334676 CCTGCTTATCCCACCCCAAA 59.665 55.000 0.00 0.00 0.00 3.28
234 252 3.525268 AAGTTGGTTGAGCAAAAGGTG 57.475 42.857 0.00 0.00 0.00 4.00
269 287 1.473677 TGGTACGGAAATGACGTCGAT 59.526 47.619 11.62 2.87 44.37 3.59
318 406 4.631234 TGGGATGAACAATACTCCTACCT 58.369 43.478 0.00 0.00 0.00 3.08
345 433 3.933155 ATTGAATGCTCATCGAACGAC 57.067 42.857 0.00 0.00 0.00 4.34
364 454 9.353999 CGAACGACTGAATATTTGGATATATGA 57.646 33.333 0.00 0.00 0.00 2.15
415 505 6.706270 TGAAACTCGCTAGAAACTTTCTGAAT 59.294 34.615 13.44 0.00 40.94 2.57
434 524 4.693566 TGAATCACACGTCCAGTTTTATCC 59.306 41.667 0.00 0.00 0.00 2.59
474 564 4.644685 CACATCCGGGTTATTCAGGAAAAT 59.355 41.667 0.00 0.00 36.25 1.82
475 565 5.127031 CACATCCGGGTTATTCAGGAAAATT 59.873 40.000 0.00 0.00 36.25 1.82
476 566 5.127031 ACATCCGGGTTATTCAGGAAAATTG 59.873 40.000 0.00 0.00 36.25 2.32
477 567 3.445805 TCCGGGTTATTCAGGAAAATTGC 59.554 43.478 0.00 0.00 0.00 3.56
479 569 4.423732 CGGGTTATTCAGGAAAATTGCTG 58.576 43.478 8.21 8.21 46.51 4.41
480 570 4.183865 GGGTTATTCAGGAAAATTGCTGC 58.816 43.478 9.52 0.00 45.01 5.25
483 573 6.268566 GGTTATTCAGGAAAATTGCTGCTAG 58.731 40.000 9.52 0.00 45.01 3.42
508 598 7.031975 GGAATTTGATGACTGGATTTCTGTTC 58.968 38.462 0.00 0.00 0.00 3.18
525 615 3.132160 TGTTCGTTAACCAGAAATGCGA 58.868 40.909 0.00 0.00 34.49 5.10
545 635 1.867363 AAGTAACCTCGGAGCCATCT 58.133 50.000 0.00 0.00 0.00 2.90
548 638 1.480954 GTAACCTCGGAGCCATCTTGA 59.519 52.381 0.00 0.00 0.00 3.02
571 661 1.462731 TTTGCCATCAGTTGCCGCTT 61.463 50.000 0.00 0.00 0.00 4.68
577 667 2.032550 CCATCAGTTGCCGCTTATCTTG 59.967 50.000 0.00 0.00 0.00 3.02
578 668 1.086696 TCAGTTGCCGCTTATCTTGC 58.913 50.000 0.00 0.00 0.00 4.01
588 678 2.509870 GCTTATCTTGCGAACTGTTGC 58.490 47.619 0.00 2.94 0.00 4.17
589 679 2.160417 GCTTATCTTGCGAACTGTTGCT 59.840 45.455 0.00 0.00 0.00 3.91
590 680 3.365364 GCTTATCTTGCGAACTGTTGCTT 60.365 43.478 0.00 0.00 0.00 3.91
591 681 4.142902 GCTTATCTTGCGAACTGTTGCTTA 60.143 41.667 0.00 0.00 0.00 3.09
595 685 3.494626 TCTTGCGAACTGTTGCTTAGAAG 59.505 43.478 0.00 2.88 0.00 2.85
605 695 4.116878 CTTAGAAGCAGCGCCTCC 57.883 61.111 2.29 0.00 0.00 4.30
607 697 2.284798 CTTAGAAGCAGCGCCTCCGA 62.285 60.000 2.29 0.00 36.29 4.55
625 715 5.477607 TCCGAACTGAACCTCATTTTAGA 57.522 39.130 0.00 0.00 0.00 2.10
644 735 2.341452 GCGGAAAGCTGAACCCTTT 58.659 52.632 0.00 0.00 44.04 3.11
645 736 0.673985 GCGGAAAGCTGAACCCTTTT 59.326 50.000 0.00 0.00 44.04 2.27
646 737 1.602920 GCGGAAAGCTGAACCCTTTTG 60.603 52.381 0.00 0.00 44.04 2.44
658 749 0.527565 CCCTTTTGCGGTTCATGAGG 59.472 55.000 0.00 0.00 0.00 3.86
661 752 0.313672 TTTTGCGGTTCATGAGGTGC 59.686 50.000 0.00 1.79 0.00 5.01
663 754 0.821301 TTGCGGTTCATGAGGTGCAA 60.821 50.000 20.03 20.03 39.73 4.08
666 757 1.666888 GCGGTTCATGAGGTGCAAAAG 60.667 52.381 9.45 0.00 0.00 2.27
668 759 2.811431 CGGTTCATGAGGTGCAAAAGTA 59.189 45.455 0.00 0.00 0.00 2.24
674 765 7.201617 GGTTCATGAGGTGCAAAAGTATACTAC 60.202 40.741 5.65 0.00 0.00 2.73
675 766 6.040247 TCATGAGGTGCAAAAGTATACTACG 58.960 40.000 5.65 0.00 0.00 3.51
676 767 4.751060 TGAGGTGCAAAAGTATACTACGG 58.249 43.478 5.65 0.00 0.00 4.02
677 768 4.463539 TGAGGTGCAAAAGTATACTACGGA 59.536 41.667 5.65 0.00 0.00 4.69
678 769 5.007385 AGGTGCAAAAGTATACTACGGAG 57.993 43.478 5.65 0.00 0.00 4.63
680 771 5.653769 AGGTGCAAAAGTATACTACGGAGTA 59.346 40.000 10.61 10.61 45.11 2.59
701 792 3.499338 AGTTTCCATCCATGTTCTTGCA 58.501 40.909 0.00 0.00 0.00 4.08
749 1284 4.031426 GCAGTAGACGAAGATTTGTAACCG 59.969 45.833 0.00 0.00 0.00 4.44
756 1293 1.890876 AGATTTGTAACCGCAGCACA 58.109 45.000 0.00 0.00 0.00 4.57
757 1294 2.436417 AGATTTGTAACCGCAGCACAT 58.564 42.857 0.00 0.00 0.00 3.21
784 1321 6.788684 TCCATGAAAAATGCTCAAATGTTG 57.211 33.333 0.00 0.00 0.00 3.33
792 1329 2.229792 TGCTCAAATGTTGTGTCCTCC 58.770 47.619 0.00 0.00 0.00 4.30
797 1338 5.261209 TCAAATGTTGTGTCCTCCAAAAG 57.739 39.130 0.00 0.00 0.00 2.27
957 1518 0.612732 TGGCCCAAAGGAGCATTCAG 60.613 55.000 0.00 0.00 33.47 3.02
959 1520 0.323725 GCCCAAAGGAGCATTCAGGA 60.324 55.000 0.00 0.00 33.47 3.86
969 1534 2.507102 ATTCAGGACGAGCACGCG 60.507 61.111 3.53 3.53 43.96 6.01
1030 1609 3.564225 GCACAGTATAAATACCTGGCCAC 59.436 47.826 0.00 0.00 33.79 5.01
1070 1649 0.969894 AGTTCTCCACCGTCCTCTTG 59.030 55.000 0.00 0.00 0.00 3.02
1080 1659 1.287730 CGTCCTCTTGCAGAGCACAC 61.288 60.000 7.65 4.28 40.98 3.82
1081 1660 0.250038 GTCCTCTTGCAGAGCACACA 60.250 55.000 7.44 0.00 40.98 3.72
1094 1677 0.864455 GCACACACAGAGCTGAAGAC 59.136 55.000 4.21 0.00 0.00 3.01
1252 1864 0.693049 TCTTTTGGACTGAGGCCTCC 59.307 55.000 29.95 16.09 0.00 4.30
1271 1883 4.944317 CCTCCTTTGGTTTGTAGGAATCTC 59.056 45.833 0.00 0.00 37.61 2.75
1275 1887 7.872138 TCCTTTGGTTTGTAGGAATCTCATAT 58.128 34.615 0.00 0.00 35.20 1.78
1278 1890 9.177608 CTTTGGTTTGTAGGAATCTCATATGAA 57.822 33.333 6.90 0.00 0.00 2.57
1279 1891 9.699410 TTTGGTTTGTAGGAATCTCATATGAAT 57.301 29.630 6.90 1.17 0.00 2.57
1280 1892 9.699410 TTGGTTTGTAGGAATCTCATATGAATT 57.301 29.630 6.90 9.34 0.00 2.17
1281 1893 9.699410 TGGTTTGTAGGAATCTCATATGAATTT 57.301 29.630 6.90 3.33 0.00 1.82
1325 1938 4.956075 TGAAAAATTCCTATGGAGCCCTTC 59.044 41.667 0.00 0.00 31.21 3.46
1326 1939 4.608170 AAAATTCCTATGGAGCCCTTCA 57.392 40.909 0.00 0.00 31.21 3.02
1332 1945 2.025887 CCTATGGAGCCCTTCAGTTTGT 60.026 50.000 0.00 0.00 0.00 2.83
1334 1947 2.561478 TGGAGCCCTTCAGTTTGTAC 57.439 50.000 0.00 0.00 0.00 2.90
1339 1952 4.501071 GAGCCCTTCAGTTTGTACGAATA 58.499 43.478 0.00 0.00 0.00 1.75
1344 1957 7.039993 AGCCCTTCAGTTTGTACGAATAAATTT 60.040 33.333 0.00 0.00 0.00 1.82
1383 1996 6.603201 TGATAGGGTTCAATCCTTCACATTTC 59.397 38.462 0.00 0.00 35.92 2.17
1388 2001 6.239289 GGGTTCAATCCTTCACATTTCAAAGA 60.239 38.462 0.00 0.00 0.00 2.52
1540 2155 1.566231 CCTATGAACCAAAGAGGGCCT 59.434 52.381 5.25 5.25 43.89 5.19
1541 2156 2.422093 CCTATGAACCAAAGAGGGCCTC 60.422 54.545 26.42 26.42 43.89 4.70
1925 2547 2.591753 CCCCACATGATCTGCCGT 59.408 61.111 0.00 0.00 0.00 5.68
2075 2697 2.488355 GACATCGGCTTCGACGGA 59.512 61.111 0.00 0.00 46.32 4.69
2207 2829 3.365265 GACGGCAAGCCCAACCTG 61.365 66.667 5.34 0.00 0.00 4.00
2255 2877 0.472471 TGAACTGGGTGGACAAGGTC 59.528 55.000 0.00 0.00 0.00 3.85
2423 3048 2.418356 GACAACCACGACACCGGA 59.582 61.111 9.46 0.00 40.78 5.14
2637 3281 5.980116 CCAGTTCTACGATCATTTCTTCGAT 59.020 40.000 0.00 0.00 38.67 3.59
2828 3472 2.356667 GGGAGGCTTCAAGGTGGG 59.643 66.667 0.00 0.00 0.00 4.61
2996 3646 4.664688 AAAAGTGAGGATGAGGGACATT 57.335 40.909 0.00 0.00 39.56 2.71
3124 3783 2.015587 CCGGAGTAGTGGTAGACTCAC 58.984 57.143 0.00 0.00 43.28 3.51
3157 3816 0.321830 CGGAATTGTGTTACGGGGGT 60.322 55.000 0.00 0.00 0.00 4.95
3176 3917 4.017775 GGGGTTGGGTTTAAAGGAGATAGT 60.018 45.833 0.00 0.00 0.00 2.12
3179 3920 6.069789 GGGTTGGGTTTAAAGGAGATAGTACT 60.070 42.308 0.00 0.00 0.00 2.73
3181 3922 8.542926 GGTTGGGTTTAAAGGAGATAGTACTAA 58.457 37.037 6.70 0.00 0.00 2.24
3185 3926 8.430431 GGGTTTAAAGGAGATAGTACTAATGCT 58.570 37.037 6.70 6.68 0.00 3.79
3186 3927 9.833917 GGTTTAAAGGAGATAGTACTAATGCTT 57.166 33.333 15.26 15.26 0.00 3.91
3193 3934 9.160412 AGGAGATAGTACTAATGCTTATTTGGT 57.840 33.333 6.70 0.00 0.00 3.67
3194 3935 9.209175 GGAGATAGTACTAATGCTTATTTGGTG 57.791 37.037 6.70 0.00 0.00 4.17
3195 3936 9.765795 GAGATAGTACTAATGCTTATTTGGTGT 57.234 33.333 6.70 0.00 0.00 4.16
3202 3943 8.110860 ACTAATGCTTATTTGGTGTATATGGC 57.889 34.615 0.00 0.00 0.00 4.40
3205 3946 6.975196 TGCTTATTTGGTGTATATGGCAAT 57.025 33.333 0.00 0.00 0.00 3.56
3208 3949 8.356657 TGCTTATTTGGTGTATATGGCAATTAC 58.643 33.333 0.00 0.00 0.00 1.89
3209 3950 7.537306 GCTTATTTGGTGTATATGGCAATTACG 59.463 37.037 0.00 0.00 0.00 3.18
3210 3951 6.952773 ATTTGGTGTATATGGCAATTACGT 57.047 33.333 0.00 0.00 0.00 3.57
3211 3952 9.557061 TTATTTGGTGTATATGGCAATTACGTA 57.443 29.630 0.00 0.00 0.00 3.57
3212 3953 7.860918 TTTGGTGTATATGGCAATTACGTAA 57.139 32.000 11.02 11.02 0.00 3.18
3213 3954 8.453238 TTTGGTGTATATGGCAATTACGTAAT 57.547 30.769 15.07 15.07 0.00 1.89
3214 3955 7.428282 TGGTGTATATGGCAATTACGTAATG 57.572 36.000 21.00 15.25 0.00 1.90
3216 3957 7.880713 TGGTGTATATGGCAATTACGTAATGAT 59.119 33.333 21.00 12.77 0.00 2.45
3217 3958 8.388103 GGTGTATATGGCAATTACGTAATGATC 58.612 37.037 21.00 13.14 0.00 2.92
3218 3959 9.151471 GTGTATATGGCAATTACGTAATGATCT 57.849 33.333 21.00 3.00 0.00 2.75
3219 3960 9.719355 TGTATATGGCAATTACGTAATGATCTT 57.281 29.630 21.00 12.82 0.00 2.40
3222 3963 9.944376 ATATGGCAATTACGTAATGATCTTACT 57.056 29.630 21.00 0.39 0.00 2.24
3223 3964 7.709269 TGGCAATTACGTAATGATCTTACTC 57.291 36.000 21.00 5.28 0.00 2.59
3225 3966 7.931407 TGGCAATTACGTAATGATCTTACTCAT 59.069 33.333 21.00 0.00 37.47 2.90
3226 3967 8.223769 GGCAATTACGTAATGATCTTACTCATG 58.776 37.037 21.00 11.66 36.03 3.07
3227 3968 8.978539 GCAATTACGTAATGATCTTACTCATGA 58.021 33.333 21.00 0.00 36.03 3.07
3239 3980 9.396022 TGATCTTACTCATGATAAAAAGGTTCC 57.604 33.333 0.00 0.00 0.00 3.62
3240 3981 9.620259 GATCTTACTCATGATAAAAAGGTTCCT 57.380 33.333 0.00 0.00 0.00 3.36
3241 3982 9.620259 ATCTTACTCATGATAAAAAGGTTCCTC 57.380 33.333 0.00 0.00 0.00 3.71
3242 3983 8.047310 TCTTACTCATGATAAAAAGGTTCCTCC 58.953 37.037 0.00 0.00 0.00 4.30
3245 3986 6.139679 TCATGATAAAAAGGTTCCTCCAGT 57.860 37.500 0.00 0.00 39.02 4.00
3246 3987 5.945784 TCATGATAAAAAGGTTCCTCCAGTG 59.054 40.000 0.00 0.00 39.02 3.66
3247 3988 4.662278 TGATAAAAAGGTTCCTCCAGTGG 58.338 43.478 1.40 1.40 39.02 4.00
3248 3989 4.352595 TGATAAAAAGGTTCCTCCAGTGGA 59.647 41.667 12.40 12.40 39.02 4.02
3250 3991 6.216662 TGATAAAAAGGTTCCTCCAGTGGATA 59.783 38.462 13.56 0.69 39.02 2.59
3251 3992 5.536497 AAAAAGGTTCCTCCAGTGGATAT 57.464 39.130 13.56 0.00 39.02 1.63
3252 3993 5.536497 AAAAGGTTCCTCCAGTGGATATT 57.464 39.130 13.56 0.00 39.02 1.28
3254 3995 5.632034 AAGGTTCCTCCAGTGGATATTAC 57.368 43.478 13.56 8.61 39.02 1.89
3255 3996 4.897051 AGGTTCCTCCAGTGGATATTACT 58.103 43.478 13.56 6.18 39.02 2.24
3256 3997 4.656112 AGGTTCCTCCAGTGGATATTACTG 59.344 45.833 13.56 11.93 43.94 2.74
3257 3998 4.409247 GGTTCCTCCAGTGGATATTACTGT 59.591 45.833 13.56 0.00 43.05 3.55
3258 3999 5.104485 GGTTCCTCCAGTGGATATTACTGTT 60.104 44.000 13.56 0.00 43.05 3.16
3259 4000 5.614324 TCCTCCAGTGGATATTACTGTTG 57.386 43.478 13.56 0.00 43.05 3.33
3260 4001 5.277250 TCCTCCAGTGGATATTACTGTTGA 58.723 41.667 13.56 8.82 43.05 3.18
3261 4002 5.128827 TCCTCCAGTGGATATTACTGTTGAC 59.871 44.000 13.56 0.00 43.05 3.18
3263 4004 6.352222 CCTCCAGTGGATATTACTGTTGACTT 60.352 42.308 13.56 0.00 43.05 3.01
3264 4005 7.016153 TCCAGTGGATATTACTGTTGACTTT 57.984 36.000 8.12 0.00 43.05 2.66
3265 4006 7.458397 TCCAGTGGATATTACTGTTGACTTTT 58.542 34.615 8.12 0.00 43.05 2.27
3266 4007 7.942341 TCCAGTGGATATTACTGTTGACTTTTT 59.058 33.333 8.12 0.00 43.05 1.94
3267 4008 9.226606 CCAGTGGATATTACTGTTGACTTTTTA 57.773 33.333 1.68 0.00 43.05 1.52
3273 4014 9.974750 GATATTACTGTTGACTTTTTAGTGAGC 57.025 33.333 0.00 0.00 0.00 4.26
3274 4015 9.726438 ATATTACTGTTGACTTTTTAGTGAGCT 57.274 29.630 0.00 0.00 0.00 4.09
3276 4017 9.726438 ATTACTGTTGACTTTTTAGTGAGCTAT 57.274 29.630 0.00 0.00 0.00 2.97
3279 4020 9.155975 ACTGTTGACTTTTTAGTGAGCTATATG 57.844 33.333 0.00 0.00 0.00 1.78
3298 4039 9.611284 GCTATATGAATTTTATTTGTGATGCGA 57.389 29.630 0.00 0.00 0.00 5.10
3302 4043 8.984891 ATGAATTTTATTTGTGATGCGAAGAA 57.015 26.923 0.00 0.00 0.00 2.52
3304 4045 8.081633 TGAATTTTATTTGTGATGCGAAGAAGT 58.918 29.630 0.00 0.00 0.00 3.01
3305 4046 8.816640 AATTTTATTTGTGATGCGAAGAAGTT 57.183 26.923 0.00 0.00 0.00 2.66
3307 4048 6.552859 TTATTTGTGATGCGAAGAAGTTGA 57.447 33.333 0.00 0.00 0.00 3.18
3308 4049 4.472691 TTTGTGATGCGAAGAAGTTGAG 57.527 40.909 0.00 0.00 0.00 3.02
3309 4050 1.800586 TGTGATGCGAAGAAGTTGAGC 59.199 47.619 0.00 0.00 0.00 4.26
3310 4051 1.800586 GTGATGCGAAGAAGTTGAGCA 59.199 47.619 0.00 0.00 42.28 4.26
3312 4053 2.072298 GATGCGAAGAAGTTGAGCACT 58.928 47.619 0.00 0.00 40.82 4.40
3313 4054 1.220529 TGCGAAGAAGTTGAGCACTG 58.779 50.000 0.00 0.00 35.12 3.66
3315 4056 1.458827 GCGAAGAAGTTGAGCACTGAG 59.541 52.381 0.00 0.00 35.12 3.35
3316 4057 2.064762 CGAAGAAGTTGAGCACTGAGG 58.935 52.381 0.00 0.00 35.12 3.86
3319 4060 3.845781 AGAAGTTGAGCACTGAGGAAA 57.154 42.857 0.00 0.00 35.12 3.13
3320 4061 4.363991 AGAAGTTGAGCACTGAGGAAAT 57.636 40.909 0.00 0.00 35.12 2.17
3323 4064 4.899352 AGTTGAGCACTGAGGAAATACT 57.101 40.909 0.00 0.00 32.83 2.12
3324 4065 4.826556 AGTTGAGCACTGAGGAAATACTC 58.173 43.478 0.00 0.00 32.83 2.59
3325 4066 4.284490 AGTTGAGCACTGAGGAAATACTCA 59.716 41.667 0.00 0.00 44.74 3.41
3326 4067 4.890158 TGAGCACTGAGGAAATACTCAA 57.110 40.909 0.00 0.00 46.05 3.02
3328 4069 5.240891 TGAGCACTGAGGAAATACTCAAAG 58.759 41.667 0.00 0.00 46.05 2.77
3329 4070 4.583871 AGCACTGAGGAAATACTCAAAGG 58.416 43.478 0.00 0.00 46.05 3.11
3330 4071 3.691609 GCACTGAGGAAATACTCAAAGGG 59.308 47.826 0.00 0.00 46.05 3.95
3333 4074 6.003950 CACTGAGGAAATACTCAAAGGGAAA 58.996 40.000 0.00 0.00 46.05 3.13
3335 4076 7.177392 CACTGAGGAAATACTCAAAGGGAAAAT 59.823 37.037 0.00 0.00 46.05 1.82
3337 4078 6.071391 TGAGGAAATACTCAAAGGGAAAATGC 60.071 38.462 0.00 0.00 44.03 3.56
3338 4079 5.187772 AGGAAATACTCAAAGGGAAAATGCC 59.812 40.000 0.00 0.00 0.00 4.40
3340 4081 1.256812 ACTCAAAGGGAAAATGCCGG 58.743 50.000 0.00 0.00 30.73 6.13
3341 4082 1.256812 CTCAAAGGGAAAATGCCGGT 58.743 50.000 1.90 0.00 30.73 5.28
3342 4083 1.618343 CTCAAAGGGAAAATGCCGGTT 59.382 47.619 1.90 0.00 30.73 4.44
3343 4084 1.342819 TCAAAGGGAAAATGCCGGTTG 59.657 47.619 1.90 0.00 32.12 3.77
3344 4085 0.034756 AAAGGGAAAATGCCGGTTGC 59.965 50.000 1.90 0.00 41.77 4.17
3346 4087 1.079888 GGGAAAATGCCGGTTGCTG 60.080 57.895 1.90 0.00 42.00 4.41
3347 4088 1.531739 GGGAAAATGCCGGTTGCTGA 61.532 55.000 1.90 0.00 42.00 4.26
3350 4091 1.994779 GAAAATGCCGGTTGCTGATTG 59.005 47.619 1.90 0.00 42.00 2.67
3352 4093 1.606885 AATGCCGGTTGCTGATTGGG 61.607 55.000 1.90 0.00 42.00 4.12
3353 4094 4.133796 GCCGGTTGCTGATTGGGC 62.134 66.667 1.90 0.00 36.87 5.36
3354 4095 2.361610 CCGGTTGCTGATTGGGCT 60.362 61.111 0.00 0.00 0.00 5.19
3355 4096 1.978617 CCGGTTGCTGATTGGGCTT 60.979 57.895 0.00 0.00 0.00 4.35
3356 4097 1.535204 CCGGTTGCTGATTGGGCTTT 61.535 55.000 0.00 0.00 0.00 3.51
3357 4098 0.388907 CGGTTGCTGATTGGGCTTTG 60.389 55.000 0.00 0.00 0.00 2.77
3358 4099 0.671472 GGTTGCTGATTGGGCTTTGC 60.671 55.000 0.00 0.00 0.00 3.68
3368 4109 3.267974 GGCTTTGCCCGAAGTGAG 58.732 61.111 0.00 0.00 44.06 3.51
3369 4110 1.302511 GGCTTTGCCCGAAGTGAGA 60.303 57.895 0.00 0.00 44.06 3.27
3371 4112 1.168714 GCTTTGCCCGAAGTGAGAAT 58.831 50.000 0.00 0.00 0.00 2.40
3372 4113 1.541588 GCTTTGCCCGAAGTGAGAATT 59.458 47.619 0.00 0.00 0.00 2.17
3373 4114 2.747446 GCTTTGCCCGAAGTGAGAATTA 59.253 45.455 0.00 0.00 0.00 1.40
3375 4116 4.142381 GCTTTGCCCGAAGTGAGAATTAAT 60.142 41.667 0.00 0.00 0.00 1.40
3376 4117 5.560966 TTTGCCCGAAGTGAGAATTAATC 57.439 39.130 0.00 0.00 0.00 1.75
3377 4118 3.541632 TGCCCGAAGTGAGAATTAATCC 58.458 45.455 0.00 0.00 0.00 3.01
3378 4119 3.199946 TGCCCGAAGTGAGAATTAATCCT 59.800 43.478 0.00 0.00 0.00 3.24
3379 4120 3.561725 GCCCGAAGTGAGAATTAATCCTG 59.438 47.826 0.00 0.00 0.00 3.86
3380 4121 3.561725 CCCGAAGTGAGAATTAATCCTGC 59.438 47.826 0.00 0.00 0.00 4.85
3382 4123 4.509600 CCGAAGTGAGAATTAATCCTGCTC 59.490 45.833 0.00 0.00 0.00 4.26
3383 4124 4.509600 CGAAGTGAGAATTAATCCTGCTCC 59.490 45.833 0.00 0.00 0.00 4.70
3384 4125 5.679601 GAAGTGAGAATTAATCCTGCTCCT 58.320 41.667 0.00 0.00 0.00 3.69
3386 4127 6.814954 AGTGAGAATTAATCCTGCTCCTAA 57.185 37.500 0.00 0.00 0.00 2.69
3387 4128 6.825610 AGTGAGAATTAATCCTGCTCCTAAG 58.174 40.000 0.00 0.00 0.00 2.18
3397 4138 1.750780 GCTCCTAAGCCTTGGCCAC 60.751 63.158 3.88 0.00 43.10 5.01
3399 4140 1.541368 TCCTAAGCCTTGGCCACCT 60.541 57.895 3.88 0.00 0.00 4.00
3400 4141 1.077429 CCTAAGCCTTGGCCACCTC 60.077 63.158 3.88 0.00 0.00 3.85
3401 4142 1.077429 CTAAGCCTTGGCCACCTCC 60.077 63.158 3.88 0.00 0.00 4.30
3404 4145 1.853250 AAGCCTTGGCCACCTCCTAC 61.853 60.000 3.88 0.00 0.00 3.18
3405 4146 2.301738 GCCTTGGCCACCTCCTACT 61.302 63.158 3.88 0.00 0.00 2.57
3406 4147 0.981277 GCCTTGGCCACCTCCTACTA 60.981 60.000 3.88 0.00 0.00 1.82
3407 4148 0.831307 CCTTGGCCACCTCCTACTAC 59.169 60.000 3.88 0.00 0.00 2.73
3408 4149 1.568504 CTTGGCCACCTCCTACTACA 58.431 55.000 3.88 0.00 0.00 2.74
3409 4150 1.906574 CTTGGCCACCTCCTACTACAA 59.093 52.381 3.88 0.00 0.00 2.41
3412 4153 1.907255 GGCCACCTCCTACTACAAACT 59.093 52.381 0.00 0.00 0.00 2.66
3413 4154 2.305052 GGCCACCTCCTACTACAAACTT 59.695 50.000 0.00 0.00 0.00 2.66
3414 4155 3.244805 GGCCACCTCCTACTACAAACTTT 60.245 47.826 0.00 0.00 0.00 2.66
3417 4158 5.374071 CCACCTCCTACTACAAACTTTGTT 58.626 41.667 12.35 0.00 42.22 2.83
3418 4159 5.238650 CCACCTCCTACTACAAACTTTGTTG 59.761 44.000 12.35 12.57 42.22 3.33
3419 4160 4.820173 ACCTCCTACTACAAACTTTGTTGC 59.180 41.667 12.35 0.00 42.22 4.17
3420 4161 5.063880 CCTCCTACTACAAACTTTGTTGCT 58.936 41.667 12.35 4.93 42.22 3.91
3421 4162 5.179555 CCTCCTACTACAAACTTTGTTGCTC 59.820 44.000 12.35 0.00 42.22 4.26
3422 4163 5.925509 TCCTACTACAAACTTTGTTGCTCT 58.074 37.500 12.35 0.00 42.22 4.09
3423 4164 7.058023 TCCTACTACAAACTTTGTTGCTCTA 57.942 36.000 12.35 0.05 42.22 2.43
3426 4167 9.431887 CCTACTACAAACTTTGTTGCTCTATTA 57.568 33.333 12.35 0.00 42.22 0.98
3429 4170 9.338622 ACTACAAACTTTGTTGCTCTATTAGTT 57.661 29.630 12.35 0.00 42.22 2.24
3432 4173 8.850156 ACAAACTTTGTTGCTCTATTAGTTGAT 58.150 29.630 1.00 0.00 42.22 2.57
3433 4174 9.121517 CAAACTTTGTTGCTCTATTAGTTGATG 57.878 33.333 0.00 0.00 0.00 3.07
3434 4175 7.383102 ACTTTGTTGCTCTATTAGTTGATGG 57.617 36.000 0.00 0.00 0.00 3.51
3435 4176 7.168219 ACTTTGTTGCTCTATTAGTTGATGGA 58.832 34.615 0.00 0.00 0.00 3.41
3438 4179 7.129457 TGTTGCTCTATTAGTTGATGGATCT 57.871 36.000 0.00 0.00 0.00 2.75
3439 4180 7.568349 TGTTGCTCTATTAGTTGATGGATCTT 58.432 34.615 0.00 0.00 0.00 2.40
3440 4181 8.049117 TGTTGCTCTATTAGTTGATGGATCTTT 58.951 33.333 0.00 0.00 0.00 2.52
3441 4182 8.897752 GTTGCTCTATTAGTTGATGGATCTTTT 58.102 33.333 0.00 0.00 0.00 2.27
3443 4184 9.547753 TGCTCTATTAGTTGATGGATCTTTTAC 57.452 33.333 0.00 0.00 0.00 2.01
3444 4185 9.547753 GCTCTATTAGTTGATGGATCTTTTACA 57.452 33.333 0.00 0.00 0.00 2.41
3455 4196 8.689061 TGATGGATCTTTTACAATTGATTCTGG 58.311 33.333 13.59 0.00 0.00 3.86
3457 4198 5.973565 GGATCTTTTACAATTGATTCTGGCG 59.026 40.000 13.59 0.00 0.00 5.69
3458 4199 4.732784 TCTTTTACAATTGATTCTGGCGC 58.267 39.130 13.59 0.00 0.00 6.53
3459 4200 3.502191 TTTACAATTGATTCTGGCGCC 57.498 42.857 22.73 22.73 0.00 6.53
3461 4202 1.587088 CAATTGATTCTGGCGCCGC 60.587 57.895 23.90 0.00 0.00 6.53
3462 4203 2.045708 AATTGATTCTGGCGCCGCA 61.046 52.632 23.90 11.71 0.00 5.69
3463 4204 1.594194 AATTGATTCTGGCGCCGCAA 61.594 50.000 23.90 19.54 0.00 4.85
3464 4205 2.270297 ATTGATTCTGGCGCCGCAAC 62.270 55.000 23.90 12.43 0.00 4.17
3465 4206 4.179579 GATTCTGGCGCCGCAACC 62.180 66.667 23.90 3.41 0.00 3.77
3468 4209 2.884997 ATTCTGGCGCCGCAACCATA 62.885 55.000 23.90 0.00 34.82 2.74
3472 4213 4.849310 GCGCCGCAACCATAGGGA 62.849 66.667 3.15 0.00 38.05 4.20
3473 4214 2.111043 CGCCGCAACCATAGGGAT 59.889 61.111 0.00 0.00 38.05 3.85
3475 4216 1.148273 GCCGCAACCATAGGGATGA 59.852 57.895 7.99 0.00 39.20 2.92
3476 4217 0.250901 GCCGCAACCATAGGGATGAT 60.251 55.000 7.99 0.00 39.20 2.45
3477 4218 1.003118 GCCGCAACCATAGGGATGATA 59.997 52.381 7.99 0.00 39.20 2.15
3478 4219 2.699954 CCGCAACCATAGGGATGATAC 58.300 52.381 7.99 0.00 39.20 2.24
3479 4220 2.303022 CCGCAACCATAGGGATGATACT 59.697 50.000 7.99 0.00 39.20 2.12
3480 4221 3.244561 CCGCAACCATAGGGATGATACTT 60.245 47.826 7.99 0.00 39.20 2.24
3481 4222 3.997021 CGCAACCATAGGGATGATACTTC 59.003 47.826 7.99 0.00 39.20 3.01
3482 4223 4.327680 GCAACCATAGGGATGATACTTCC 58.672 47.826 7.99 0.00 39.20 3.46
3484 4225 5.799213 CAACCATAGGGATGATACTTCCTC 58.201 45.833 0.00 0.00 39.20 3.71
3485 4226 4.430441 ACCATAGGGATGATACTTCCTCC 58.570 47.826 0.00 0.00 36.28 4.30
3524 4953 6.528537 TGAGGGACATCCATTGTATTTTTG 57.471 37.500 0.00 0.00 39.18 2.44
3527 4956 8.058235 TGAGGGACATCCATTGTATTTTTGATA 58.942 33.333 0.00 0.00 39.18 2.15
3558 4987 9.487790 AATAATCATTTCACATTGGAAAACGTT 57.512 25.926 0.00 0.00 39.94 3.99
3559 4988 7.784633 AATCATTTCACATTGGAAAACGTTT 57.215 28.000 7.96 7.96 39.94 3.60
3560 4989 6.580963 TCATTTCACATTGGAAAACGTTTG 57.419 33.333 15.46 3.92 39.94 2.93
3561 4990 6.333416 TCATTTCACATTGGAAAACGTTTGA 58.667 32.000 15.46 2.37 39.94 2.69
3562 4991 6.254589 TCATTTCACATTGGAAAACGTTTGAC 59.745 34.615 15.46 11.03 39.94 3.18
3563 4992 4.703645 TCACATTGGAAAACGTTTGACA 57.296 36.364 15.46 13.58 0.00 3.58
3564 4993 5.060662 TCACATTGGAAAACGTTTGACAA 57.939 34.783 23.98 23.98 0.00 3.18
3565 4994 4.859798 TCACATTGGAAAACGTTTGACAAC 59.140 37.500 24.14 11.38 0.00 3.32
3566 4995 9.184271 TTTCACATTGGAAAACGTTTGACAACG 62.184 37.037 24.14 20.59 44.61 4.10
3573 5002 2.353030 GTTTGACAACGGTGCGCC 60.353 61.111 6.11 6.11 0.00 6.53
3592 5021 4.090057 GCCGAGTTTGCGCTGGTC 62.090 66.667 9.73 0.00 0.00 4.02
3593 5022 2.664851 CCGAGTTTGCGCTGGTCA 60.665 61.111 9.73 0.00 0.00 4.02
3594 5023 2.551270 CGAGTTTGCGCTGGTCAC 59.449 61.111 9.73 0.00 0.00 3.67
3595 5024 2.243957 CGAGTTTGCGCTGGTCACA 61.244 57.895 9.73 0.00 0.00 3.58
3596 5025 1.279840 GAGTTTGCGCTGGTCACAC 59.720 57.895 9.73 0.00 0.00 3.82
3597 5026 2.052237 GTTTGCGCTGGTCACACG 60.052 61.111 9.73 0.00 0.00 4.49
3604 5033 3.406361 CTGGTCACACGCTGCGTC 61.406 66.667 26.49 13.90 38.32 5.19
3654 5083 3.448469 CCCCCAAAACAGCCACTAA 57.552 52.632 0.00 0.00 0.00 2.24
3655 5084 1.710816 CCCCCAAAACAGCCACTAAA 58.289 50.000 0.00 0.00 0.00 1.85
3656 5085 2.256306 CCCCCAAAACAGCCACTAAAT 58.744 47.619 0.00 0.00 0.00 1.40
3657 5086 2.637382 CCCCCAAAACAGCCACTAAATT 59.363 45.455 0.00 0.00 0.00 1.82
3658 5087 3.072330 CCCCCAAAACAGCCACTAAATTT 59.928 43.478 0.00 0.00 0.00 1.82
3659 5088 4.064388 CCCCAAAACAGCCACTAAATTTG 58.936 43.478 0.00 0.00 0.00 2.32
3660 5089 4.444164 CCCCAAAACAGCCACTAAATTTGT 60.444 41.667 0.00 0.00 0.00 2.83
3661 5090 4.511082 CCCAAAACAGCCACTAAATTTGTG 59.489 41.667 0.00 7.28 35.39 3.33
3662 5091 5.355596 CCAAAACAGCCACTAAATTTGTGA 58.644 37.500 17.13 0.00 37.60 3.58
3663 5092 5.463061 CCAAAACAGCCACTAAATTTGTGAG 59.537 40.000 17.13 4.17 37.60 3.51
3664 5093 4.853924 AACAGCCACTAAATTTGTGAGG 57.146 40.909 17.13 11.52 37.60 3.86
3665 5094 3.157087 ACAGCCACTAAATTTGTGAGGG 58.843 45.455 17.13 2.81 37.60 4.30
3666 5095 3.157087 CAGCCACTAAATTTGTGAGGGT 58.843 45.455 17.13 12.55 37.60 4.34
3667 5096 3.057315 CAGCCACTAAATTTGTGAGGGTG 60.057 47.826 18.74 18.74 37.60 4.61
3668 5097 3.153919 GCCACTAAATTTGTGAGGGTGA 58.846 45.455 17.13 0.00 37.60 4.02
3669 5098 3.191371 GCCACTAAATTTGTGAGGGTGAG 59.809 47.826 17.13 1.11 37.60 3.51
3670 5099 4.398319 CCACTAAATTTGTGAGGGTGAGT 58.602 43.478 17.13 1.65 37.60 3.41
3671 5100 4.216257 CCACTAAATTTGTGAGGGTGAGTG 59.784 45.833 17.13 11.58 37.60 3.51
3672 5101 4.216257 CACTAAATTTGTGAGGGTGAGTGG 59.784 45.833 12.60 0.00 37.60 4.00
3673 5102 3.593442 AAATTTGTGAGGGTGAGTGGA 57.407 42.857 0.00 0.00 0.00 4.02
3674 5103 3.593442 AATTTGTGAGGGTGAGTGGAA 57.407 42.857 0.00 0.00 0.00 3.53
3675 5104 2.638480 TTTGTGAGGGTGAGTGGAAG 57.362 50.000 0.00 0.00 0.00 3.46
3676 5105 1.801242 TTGTGAGGGTGAGTGGAAGA 58.199 50.000 0.00 0.00 0.00 2.87
3677 5106 1.801242 TGTGAGGGTGAGTGGAAGAA 58.199 50.000 0.00 0.00 0.00 2.52
3678 5107 1.416401 TGTGAGGGTGAGTGGAAGAAC 59.584 52.381 0.00 0.00 0.00 3.01
3679 5108 1.416401 GTGAGGGTGAGTGGAAGAACA 59.584 52.381 0.00 0.00 0.00 3.18
3680 5109 1.416401 TGAGGGTGAGTGGAAGAACAC 59.584 52.381 0.00 0.00 41.63 3.32
3681 5110 0.393077 AGGGTGAGTGGAAGAACACG 59.607 55.000 0.00 0.00 45.80 4.49
3682 5111 0.391597 GGGTGAGTGGAAGAACACGA 59.608 55.000 0.00 0.00 45.80 4.35
3683 5112 1.605712 GGGTGAGTGGAAGAACACGAG 60.606 57.143 0.00 0.00 45.80 4.18
3684 5113 1.140816 GTGAGTGGAAGAACACGAGC 58.859 55.000 0.00 0.00 45.80 5.03
3685 5114 0.318699 TGAGTGGAAGAACACGAGCG 60.319 55.000 0.00 0.00 45.80 5.03
3686 5115 0.039437 GAGTGGAAGAACACGAGCGA 60.039 55.000 0.00 0.00 45.80 4.93
3687 5116 0.039074 AGTGGAAGAACACGAGCGAG 60.039 55.000 0.00 0.00 45.80 5.03
3688 5117 1.009389 GTGGAAGAACACGAGCGAGG 61.009 60.000 0.00 0.00 0.00 4.63
3689 5118 1.289380 GGAAGAACACGAGCGAGGT 59.711 57.895 0.00 0.00 0.00 3.85
3690 5119 1.009389 GGAAGAACACGAGCGAGGTG 61.009 60.000 0.00 3.74 41.15 4.00
3691 5120 1.618640 GAAGAACACGAGCGAGGTGC 61.619 60.000 0.00 0.00 46.98 5.01
3700 5129 2.260434 GCGAGGTGCTGTTACGGA 59.740 61.111 0.00 0.00 41.73 4.69
3701 5130 1.805945 GCGAGGTGCTGTTACGGAG 60.806 63.158 0.00 0.00 41.73 4.63
3702 5131 1.805945 CGAGGTGCTGTTACGGAGC 60.806 63.158 0.00 0.00 36.95 4.70
3703 5132 1.592223 GAGGTGCTGTTACGGAGCT 59.408 57.895 0.00 0.00 37.35 4.09
3704 5133 0.737715 GAGGTGCTGTTACGGAGCTG 60.738 60.000 0.00 0.00 37.35 4.24
3705 5134 1.741770 GGTGCTGTTACGGAGCTGG 60.742 63.158 0.00 0.00 37.35 4.85
3706 5135 1.741770 GTGCTGTTACGGAGCTGGG 60.742 63.158 0.00 0.00 37.35 4.45
3707 5136 2.125106 GCTGTTACGGAGCTGGGG 60.125 66.667 0.00 0.00 33.37 4.96
3708 5137 2.584608 CTGTTACGGAGCTGGGGG 59.415 66.667 0.00 0.00 0.00 5.40
3709 5138 2.203877 TGTTACGGAGCTGGGGGT 60.204 61.111 0.00 0.00 0.00 4.95
3710 5139 2.267961 GTTACGGAGCTGGGGGTG 59.732 66.667 0.00 0.00 0.00 4.61
3711 5140 3.712907 TTACGGAGCTGGGGGTGC 61.713 66.667 0.00 0.00 0.00 5.01
3712 5141 4.715130 TACGGAGCTGGGGGTGCT 62.715 66.667 0.00 0.00 44.24 4.40
3713 5142 2.808761 TTACGGAGCTGGGGGTGCTA 62.809 60.000 0.00 0.00 41.30 3.49
3714 5143 4.162690 CGGAGCTGGGGGTGCTAC 62.163 72.222 0.00 0.00 41.30 3.58
3715 5144 2.689034 GGAGCTGGGGGTGCTACT 60.689 66.667 0.00 0.00 41.30 2.57
3716 5145 2.301738 GGAGCTGGGGGTGCTACTT 61.302 63.158 0.00 0.00 41.30 2.24
3717 5146 1.222113 GAGCTGGGGGTGCTACTTC 59.778 63.158 0.00 0.00 41.30 3.01
3718 5147 2.258748 GAGCTGGGGGTGCTACTTCC 62.259 65.000 0.00 0.00 41.30 3.46
3719 5148 2.602676 GCTGGGGGTGCTACTTCCA 61.603 63.158 0.00 0.00 0.00 3.53
3720 5149 1.299976 CTGGGGGTGCTACTTCCAC 59.700 63.158 0.00 0.00 0.00 4.02
3727 5156 1.562783 GTGCTACTTCCACCTCCTCT 58.437 55.000 0.00 0.00 0.00 3.69
3728 5157 1.205893 GTGCTACTTCCACCTCCTCTG 59.794 57.143 0.00 0.00 0.00 3.35
3729 5158 0.176910 GCTACTTCCACCTCCTCTGC 59.823 60.000 0.00 0.00 0.00 4.26
3730 5159 0.457851 CTACTTCCACCTCCTCTGCG 59.542 60.000 0.00 0.00 0.00 5.18
3731 5160 0.039180 TACTTCCACCTCCTCTGCGA 59.961 55.000 0.00 0.00 0.00 5.10
3732 5161 1.216710 CTTCCACCTCCTCTGCGAC 59.783 63.158 0.00 0.00 0.00 5.19
3733 5162 1.228894 TTCCACCTCCTCTGCGACT 60.229 57.895 0.00 0.00 0.00 4.18
3734 5163 1.536073 TTCCACCTCCTCTGCGACTG 61.536 60.000 0.00 0.00 0.00 3.51
3735 5164 2.125753 CACCTCCTCTGCGACTGC 60.126 66.667 0.00 0.00 43.20 4.40
3771 5200 4.722700 GGTGCCGCTGGTCACCAT 62.723 66.667 22.82 0.00 43.88 3.55
3772 5201 3.434319 GTGCCGCTGGTCACCATG 61.434 66.667 0.00 0.00 30.82 3.66
3773 5202 3.952508 TGCCGCTGGTCACCATGT 61.953 61.111 0.00 0.00 30.82 3.21
3774 5203 3.434319 GCCGCTGGTCACCATGTG 61.434 66.667 0.00 0.00 30.82 3.21
3775 5204 3.434319 CCGCTGGTCACCATGTGC 61.434 66.667 0.00 0.00 32.98 4.57
3776 5205 2.359107 CGCTGGTCACCATGTGCT 60.359 61.111 0.00 0.00 32.98 4.40
3777 5206 2.683859 CGCTGGTCACCATGTGCTG 61.684 63.158 0.00 0.00 32.98 4.41
3785 5214 2.747460 CCATGTGCTGGGACCGTG 60.747 66.667 0.00 0.00 41.82 4.94
3786 5215 2.747460 CATGTGCTGGGACCGTGG 60.747 66.667 0.00 0.00 0.00 4.94
3787 5216 3.249189 ATGTGCTGGGACCGTGGT 61.249 61.111 0.00 0.00 0.00 4.16
3788 5217 3.254024 ATGTGCTGGGACCGTGGTC 62.254 63.158 10.65 10.65 43.87 4.02
3789 5218 3.936203 GTGCTGGGACCGTGGTCA 61.936 66.667 20.02 0.96 46.20 4.02
3804 5233 4.717629 TCACCGCGCACCGAGAAG 62.718 66.667 8.75 0.00 40.02 2.85
3809 5238 4.742201 GCGCACCGAGAAGCTGGA 62.742 66.667 0.30 0.00 0.00 3.86
3810 5239 2.048222 CGCACCGAGAAGCTGGAA 60.048 61.111 0.00 0.00 0.00 3.53
3811 5240 2.383527 CGCACCGAGAAGCTGGAAC 61.384 63.158 0.00 0.00 0.00 3.62
3812 5241 1.004440 GCACCGAGAAGCTGGAACT 60.004 57.895 0.00 0.00 0.00 3.01
3813 5242 1.294659 GCACCGAGAAGCTGGAACTG 61.295 60.000 0.00 0.00 0.00 3.16
3814 5243 0.318441 CACCGAGAAGCTGGAACTGA 59.682 55.000 0.00 0.00 0.00 3.41
3815 5244 1.066573 CACCGAGAAGCTGGAACTGAT 60.067 52.381 0.00 0.00 0.00 2.90
3816 5245 1.066573 ACCGAGAAGCTGGAACTGATG 60.067 52.381 0.00 0.00 0.00 3.07
3817 5246 1.005340 CGAGAAGCTGGAACTGATGC 58.995 55.000 0.00 0.00 0.00 3.91
3818 5247 1.673923 CGAGAAGCTGGAACTGATGCA 60.674 52.381 0.00 0.00 0.00 3.96
3819 5248 1.736681 GAGAAGCTGGAACTGATGCAC 59.263 52.381 0.00 0.00 0.00 4.57
3820 5249 1.350351 AGAAGCTGGAACTGATGCACT 59.650 47.619 0.00 0.00 0.00 4.40
3821 5250 1.467734 GAAGCTGGAACTGATGCACTG 59.532 52.381 0.00 0.00 0.00 3.66
3822 5251 0.689055 AGCTGGAACTGATGCACTGA 59.311 50.000 0.00 0.00 0.00 3.41
3823 5252 1.085091 GCTGGAACTGATGCACTGAG 58.915 55.000 0.00 0.00 0.00 3.35
3824 5253 1.735386 CTGGAACTGATGCACTGAGG 58.265 55.000 0.00 0.00 0.00 3.86
3825 5254 0.325933 TGGAACTGATGCACTGAGGG 59.674 55.000 0.00 0.00 0.00 4.30
3826 5255 1.028868 GGAACTGATGCACTGAGGGC 61.029 60.000 0.00 0.00 0.00 5.19
3827 5256 0.321919 GAACTGATGCACTGAGGGCA 60.322 55.000 13.61 13.61 46.66 5.36
3832 5261 2.993008 TGCACTGAGGGCATCTCC 59.007 61.111 4.67 0.00 41.76 3.71
3833 5262 1.919816 TGCACTGAGGGCATCTCCA 60.920 57.895 4.67 0.00 41.76 3.86
3834 5263 1.153208 GCACTGAGGGCATCTCCAG 60.153 63.158 0.00 0.00 41.76 3.86
3835 5264 1.153208 CACTGAGGGCATCTCCAGC 60.153 63.158 0.00 0.00 41.76 4.85
3841 5270 2.892425 GGCATCTCCAGCCGTTCG 60.892 66.667 0.00 0.00 43.15 3.95
3842 5271 2.892425 GCATCTCCAGCCGTTCGG 60.892 66.667 6.90 6.90 0.00 4.30
3861 5290 3.820843 CCCCCAGGGCGCCTAAAT 61.821 66.667 28.56 7.33 35.35 1.40
3862 5291 2.457323 CCCCCAGGGCGCCTAAATA 61.457 63.158 28.56 0.00 35.35 1.40
3863 5292 1.073199 CCCCAGGGCGCCTAAATAG 59.927 63.158 28.56 10.47 29.64 1.73
3864 5293 1.415672 CCCCAGGGCGCCTAAATAGA 61.416 60.000 28.56 0.00 29.64 1.98
3865 5294 0.035458 CCCAGGGCGCCTAAATAGAG 59.965 60.000 28.56 6.58 29.64 2.43
3866 5295 0.603975 CCAGGGCGCCTAAATAGAGC 60.604 60.000 28.56 5.83 29.64 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 76 3.431856 CGCACGCTATCTGTAACTGTAA 58.568 45.455 0.00 0.00 0.00 2.41
59 77 2.793585 GCGCACGCTATCTGTAACTGTA 60.794 50.000 7.96 0.00 38.26 2.74
60 78 1.909376 CGCACGCTATCTGTAACTGT 58.091 50.000 0.00 0.00 0.00 3.55
61 79 0.572590 GCGCACGCTATCTGTAACTG 59.427 55.000 7.96 0.00 38.26 3.16
62 80 0.527817 GGCGCACGCTATCTGTAACT 60.528 55.000 15.36 0.00 41.60 2.24
63 81 0.527817 AGGCGCACGCTATCTGTAAC 60.528 55.000 15.36 0.00 41.60 2.50
99 117 1.664659 GAGCGTGCTCTCTACGTAGAA 59.335 52.381 24.66 14.86 43.09 2.10
116 134 0.942252 AACGGAACAAACGGAAGAGC 59.058 50.000 0.00 0.00 35.23 4.09
132 150 2.549754 AGCAAATCCAACTGACTCAACG 59.450 45.455 0.00 0.00 0.00 4.10
154 172 1.227556 GACGTTATCGCCAGGCCAT 60.228 57.895 5.01 0.00 41.18 4.40
212 230 3.618150 CACCTTTTGCTCAACCAACTTTG 59.382 43.478 0.00 0.00 0.00 2.77
234 252 1.466558 GTACCAGAAAGAAGCTGCTGC 59.533 52.381 1.35 7.62 40.05 5.25
235 253 1.728971 CGTACCAGAAAGAAGCTGCTG 59.271 52.381 1.35 0.00 32.06 4.41
236 254 1.338200 CCGTACCAGAAAGAAGCTGCT 60.338 52.381 0.00 0.00 32.06 4.24
269 287 1.006043 TCCGAATGGGGGTTGCAATTA 59.994 47.619 0.59 0.00 36.01 1.40
364 454 6.418946 ACTTTTCTCAGTCCAAAGAGTTCTT 58.581 36.000 0.00 0.00 37.91 2.52
365 455 5.995446 ACTTTTCTCAGTCCAAAGAGTTCT 58.005 37.500 0.00 0.00 32.73 3.01
368 458 6.180472 TCAAACTTTTCTCAGTCCAAAGAGT 58.820 36.000 0.00 0.00 32.73 3.24
415 505 2.679450 CGGATAAAACTGGACGTGTGA 58.321 47.619 0.00 0.00 0.00 3.58
474 564 4.397103 CAGTCATCAAATTCCTAGCAGCAA 59.603 41.667 0.00 0.00 0.00 3.91
475 565 3.943381 CAGTCATCAAATTCCTAGCAGCA 59.057 43.478 0.00 0.00 0.00 4.41
476 566 3.314635 CCAGTCATCAAATTCCTAGCAGC 59.685 47.826 0.00 0.00 0.00 5.25
477 567 4.774124 TCCAGTCATCAAATTCCTAGCAG 58.226 43.478 0.00 0.00 0.00 4.24
479 569 6.545298 AGAAATCCAGTCATCAAATTCCTAGC 59.455 38.462 0.00 0.00 0.00 3.42
480 570 7.555554 ACAGAAATCCAGTCATCAAATTCCTAG 59.444 37.037 0.00 0.00 0.00 3.02
483 573 6.521151 ACAGAAATCCAGTCATCAAATTCC 57.479 37.500 0.00 0.00 0.00 3.01
491 581 5.411669 GGTTAACGAACAGAAATCCAGTCAT 59.588 40.000 0.00 0.00 37.29 3.06
508 598 4.141855 ACTTTCGCATTTCTGGTTAACG 57.858 40.909 0.00 0.00 0.00 3.18
525 615 2.188817 AGATGGCTCCGAGGTTACTTT 58.811 47.619 0.00 0.00 0.00 2.66
545 635 3.916761 GCAACTGATGGCAAATTCTCAA 58.083 40.909 0.00 0.00 0.00 3.02
588 678 1.880340 CGGAGGCGCTGCTTCTAAG 60.880 63.158 7.64 0.00 34.98 2.18
589 679 1.884075 TTCGGAGGCGCTGCTTCTAA 61.884 55.000 7.64 0.00 34.98 2.10
590 680 2.348104 TTCGGAGGCGCTGCTTCTA 61.348 57.895 7.64 0.00 34.98 2.10
591 681 3.695606 TTCGGAGGCGCTGCTTCT 61.696 61.111 7.64 0.00 34.98 2.85
595 685 4.742201 TCAGTTCGGAGGCGCTGC 62.742 66.667 7.64 0.00 0.00 5.25
600 690 0.250513 ATGAGGTTCAGTTCGGAGGC 59.749 55.000 0.00 0.00 0.00 4.70
601 691 2.770164 AATGAGGTTCAGTTCGGAGG 57.230 50.000 0.00 0.00 0.00 4.30
602 692 5.479306 TCTAAAATGAGGTTCAGTTCGGAG 58.521 41.667 0.00 0.00 33.14 4.63
605 695 4.201628 CGCTCTAAAATGAGGTTCAGTTCG 60.202 45.833 0.00 0.00 33.14 3.95
607 697 4.003648 CCGCTCTAAAATGAGGTTCAGTT 58.996 43.478 0.00 0.00 36.10 3.16
639 730 0.527565 CCTCATGAACCGCAAAAGGG 59.472 55.000 0.00 0.00 35.02 3.95
642 733 0.313672 GCACCTCATGAACCGCAAAA 59.686 50.000 0.00 0.00 0.00 2.44
644 735 0.821301 TTGCACCTCATGAACCGCAA 60.821 50.000 16.95 16.95 37.05 4.85
645 736 0.821301 TTTGCACCTCATGAACCGCA 60.821 50.000 8.15 8.15 0.00 5.69
646 737 0.313672 TTTTGCACCTCATGAACCGC 59.686 50.000 0.00 0.00 0.00 5.68
652 743 5.234329 CCGTAGTATACTTTTGCACCTCATG 59.766 44.000 11.40 0.00 40.12 3.07
655 746 5.002464 TCCGTAGTATACTTTTGCACCTC 57.998 43.478 11.40 0.00 40.12 3.85
658 749 6.558909 ACTACTCCGTAGTATACTTTTGCAC 58.441 40.000 11.40 1.59 45.99 4.57
661 752 8.246180 TGGAAACTACTCCGTAGTATACTTTTG 58.754 37.037 11.40 1.39 46.96 2.44
663 754 7.944729 TGGAAACTACTCCGTAGTATACTTT 57.055 36.000 11.40 0.00 46.96 2.66
666 757 6.488006 TGGATGGAAACTACTCCGTAGTATAC 59.512 42.308 7.06 0.00 46.96 1.47
668 759 5.452255 TGGATGGAAACTACTCCGTAGTAT 58.548 41.667 7.06 0.00 46.96 2.12
674 765 3.543680 ACATGGATGGAAACTACTCCG 57.456 47.619 0.00 0.00 38.44 4.63
675 766 5.104259 AGAACATGGATGGAAACTACTCC 57.896 43.478 0.00 0.00 35.88 3.85
676 767 5.163713 GCAAGAACATGGATGGAAACTACTC 60.164 44.000 0.00 0.00 0.00 2.59
677 768 4.702131 GCAAGAACATGGATGGAAACTACT 59.298 41.667 0.00 0.00 0.00 2.57
678 769 4.458989 TGCAAGAACATGGATGGAAACTAC 59.541 41.667 0.00 0.00 0.00 2.73
679 770 4.661222 TGCAAGAACATGGATGGAAACTA 58.339 39.130 0.00 0.00 0.00 2.24
680 771 3.499338 TGCAAGAACATGGATGGAAACT 58.501 40.909 0.00 0.00 0.00 2.66
681 772 3.940209 TGCAAGAACATGGATGGAAAC 57.060 42.857 0.00 0.00 0.00 2.78
682 773 4.952071 TTTGCAAGAACATGGATGGAAA 57.048 36.364 0.00 1.55 31.92 3.13
683 774 5.486735 AATTTGCAAGAACATGGATGGAA 57.513 34.783 0.00 0.00 0.00 3.53
684 775 5.486735 AAATTTGCAAGAACATGGATGGA 57.513 34.783 0.00 0.00 0.00 3.41
685 776 5.935789 AGAAAATTTGCAAGAACATGGATGG 59.064 36.000 0.00 0.00 0.00 3.51
686 777 7.295201 CAAGAAAATTTGCAAGAACATGGATG 58.705 34.615 0.00 0.00 0.00 3.51
687 778 6.428771 CCAAGAAAATTTGCAAGAACATGGAT 59.571 34.615 0.00 0.00 0.00 3.41
701 792 6.670695 ACTGTATCCAAGCCAAGAAAATTT 57.329 33.333 0.00 0.00 0.00 1.82
722 813 4.632153 ACAAATCTTCGTCTACTGCAACT 58.368 39.130 0.00 0.00 0.00 3.16
734 1269 1.463056 TGCTGCGGTTACAAATCTTCG 59.537 47.619 0.00 0.00 0.00 3.79
749 1284 6.711579 CATTTTTCATGGAATAATGTGCTGC 58.288 36.000 11.52 0.00 0.00 5.25
756 1293 9.675464 ACATTTGAGCATTTTTCATGGAATAAT 57.325 25.926 0.00 0.00 0.00 1.28
757 1294 9.504708 AACATTTGAGCATTTTTCATGGAATAA 57.495 25.926 0.00 0.00 0.00 1.40
792 1329 5.006386 AGTTATCCTGAACCTCTGCTTTTG 58.994 41.667 0.00 0.00 0.00 2.44
959 1520 3.353836 ATTTTGCCGCGTGCTCGT 61.354 55.556 18.14 2.51 42.00 4.18
1030 1609 1.741706 GATGGATTCAGCTGGTGTGTG 59.258 52.381 15.13 0.00 0.00 3.82
1070 1649 1.301558 AGCTCTGTGTGTGCTCTGC 60.302 57.895 0.00 0.00 41.06 4.26
1080 1659 1.638133 CCATCGTCTTCAGCTCTGTG 58.362 55.000 0.00 0.00 0.00 3.66
1081 1660 0.108424 GCCATCGTCTTCAGCTCTGT 60.108 55.000 0.00 0.00 0.00 3.41
1094 1677 1.002900 ACAAGTGTTTGTTCGCCATCG 60.003 47.619 0.00 0.00 45.01 3.84
1188 1777 0.319555 TTCTTGCCGACGAACAGGAG 60.320 55.000 0.00 0.00 0.00 3.69
1252 1864 8.737168 TCATATGAGATTCCTACAAACCAAAG 57.263 34.615 0.00 0.00 0.00 2.77
1299 1911 5.966319 AGGGCTCCATAGGAATTTTTCATTT 59.034 36.000 0.00 0.00 0.00 2.32
1302 1914 4.608170 AGGGCTCCATAGGAATTTTTCA 57.392 40.909 0.00 0.00 0.00 2.69
1316 1928 1.001633 TCGTACAAACTGAAGGGCTCC 59.998 52.381 0.00 0.00 0.00 4.70
1344 1957 9.429109 TTGAACCCTATCATACACAGTAATAGA 57.571 33.333 0.00 0.00 0.00 1.98
1350 1963 5.667626 AGGATTGAACCCTATCATACACAGT 59.332 40.000 0.00 0.00 30.92 3.55
1353 1966 6.483640 GTGAAGGATTGAACCCTATCATACAC 59.516 42.308 0.00 0.00 32.77 2.90
1358 1971 5.715439 ATGTGAAGGATTGAACCCTATCA 57.285 39.130 0.00 0.00 32.77 2.15
1516 2131 4.505742 GGCCCTCTTTGGTTCATAGGATAG 60.506 50.000 0.00 0.00 0.00 2.08
2075 2697 3.188786 GCGAAGTCGAAGCGCCAT 61.189 61.111 2.29 0.00 44.55 4.40
2207 2829 2.358737 CGGTGCTGGTCCTGGTTC 60.359 66.667 0.00 0.00 0.00 3.62
2423 3048 3.582148 CACATGTGCTGCGTGGAT 58.418 55.556 13.94 0.00 38.39 3.41
2570 3207 4.218200 TCAGTTCGGTCGTGGTTTTCTATA 59.782 41.667 0.00 0.00 0.00 1.31
2637 3281 0.120377 TCTCCTCCTTAAGGCCCCAA 59.880 55.000 17.32 0.00 45.78 4.12
3097 3756 1.400737 ACCACTACTCCGGTATGCTC 58.599 55.000 0.00 0.00 32.31 4.26
3124 3783 2.867456 ATTCCGTAACAAAACGCTCG 57.133 45.000 0.00 0.00 41.51 5.03
3176 3917 9.226606 GCCATATACACCAAATAAGCATTAGTA 57.773 33.333 0.00 0.00 31.76 1.82
3179 3920 8.470657 TTGCCATATACACCAAATAAGCATTA 57.529 30.769 0.00 0.00 33.48 1.90
3181 3922 6.975196 TTGCCATATACACCAAATAAGCAT 57.025 33.333 0.00 0.00 0.00 3.79
3185 3926 8.453238 ACGTAATTGCCATATACACCAAATAA 57.547 30.769 0.00 0.00 0.00 1.40
3186 3927 9.557061 TTACGTAATTGCCATATACACCAAATA 57.443 29.630 3.29 0.00 0.00 1.40
3190 3931 7.217906 TCATTACGTAATTGCCATATACACCA 58.782 34.615 18.06 0.00 0.00 4.17
3192 3933 9.151471 AGATCATTACGTAATTGCCATATACAC 57.849 33.333 18.06 1.18 0.00 2.90
3193 3934 9.719355 AAGATCATTACGTAATTGCCATATACA 57.281 29.630 18.06 0.00 0.00 2.29
3196 3937 9.944376 AGTAAGATCATTACGTAATTGCCATAT 57.056 29.630 18.06 5.61 0.00 1.78
3197 3938 9.419297 GAGTAAGATCATTACGTAATTGCCATA 57.581 33.333 18.06 6.88 0.00 2.74
3198 3939 7.931407 TGAGTAAGATCATTACGTAATTGCCAT 59.069 33.333 18.06 8.05 0.00 4.40
3199 3940 7.269316 TGAGTAAGATCATTACGTAATTGCCA 58.731 34.615 18.06 3.60 0.00 4.92
3200 3941 7.709269 TGAGTAAGATCATTACGTAATTGCC 57.291 36.000 18.06 9.68 0.00 4.52
3201 3942 8.978539 TCATGAGTAAGATCATTACGTAATTGC 58.021 33.333 18.06 10.23 37.84 3.56
3213 3954 9.396022 GGAACCTTTTTATCATGAGTAAGATCA 57.604 33.333 0.09 0.00 0.00 2.92
3214 3955 9.620259 AGGAACCTTTTTATCATGAGTAAGATC 57.380 33.333 0.09 4.51 0.00 2.75
3216 3957 8.047310 GGAGGAACCTTTTTATCATGAGTAAGA 58.953 37.037 0.09 0.00 35.41 2.10
3217 3958 7.829211 TGGAGGAACCTTTTTATCATGAGTAAG 59.171 37.037 0.09 2.15 39.86 2.34
3218 3959 7.695055 TGGAGGAACCTTTTTATCATGAGTAA 58.305 34.615 0.09 0.00 39.86 2.24
3219 3960 7.037586 ACTGGAGGAACCTTTTTATCATGAGTA 60.038 37.037 0.09 0.00 39.86 2.59
3221 3962 6.094603 CACTGGAGGAACCTTTTTATCATGAG 59.905 42.308 0.09 0.00 39.86 2.90
3222 3963 5.945784 CACTGGAGGAACCTTTTTATCATGA 59.054 40.000 0.00 0.00 39.86 3.07
3223 3964 5.126061 CCACTGGAGGAACCTTTTTATCATG 59.874 44.000 0.00 0.00 39.86 3.07
3225 3966 4.352595 TCCACTGGAGGAACCTTTTTATCA 59.647 41.667 0.00 0.00 39.86 2.15
3226 3967 4.918588 TCCACTGGAGGAACCTTTTTATC 58.081 43.478 0.00 0.00 39.86 1.75
3227 3968 5.536497 ATCCACTGGAGGAACCTTTTTAT 57.464 39.130 3.62 0.00 41.92 1.40
3228 3969 6.652205 ATATCCACTGGAGGAACCTTTTTA 57.348 37.500 3.62 0.00 41.92 1.52
3230 3971 5.536497 AATATCCACTGGAGGAACCTTTT 57.464 39.130 3.62 0.00 41.92 2.27
3231 3972 5.731678 AGTAATATCCACTGGAGGAACCTTT 59.268 40.000 3.62 0.00 41.92 3.11
3232 3973 5.131142 CAGTAATATCCACTGGAGGAACCTT 59.869 44.000 3.62 0.00 41.92 3.50
3233 3974 4.656112 CAGTAATATCCACTGGAGGAACCT 59.344 45.833 3.62 0.00 41.92 3.50
3234 3975 4.409247 ACAGTAATATCCACTGGAGGAACC 59.591 45.833 17.29 0.00 46.25 3.62
3235 3976 5.615925 ACAGTAATATCCACTGGAGGAAC 57.384 43.478 17.29 0.00 46.25 3.62
3237 3978 5.128827 GTCAACAGTAATATCCACTGGAGGA 59.871 44.000 17.29 10.74 46.25 3.71
3238 3979 5.129485 AGTCAACAGTAATATCCACTGGAGG 59.871 44.000 17.29 9.20 46.25 4.30
3239 3980 6.227298 AGTCAACAGTAATATCCACTGGAG 57.773 41.667 17.29 11.19 46.25 3.86
3240 3981 6.620877 AAGTCAACAGTAATATCCACTGGA 57.379 37.500 17.29 0.00 46.25 3.86
3241 3982 7.687941 AAAAGTCAACAGTAATATCCACTGG 57.312 36.000 17.29 0.00 46.25 4.00
3247 3988 9.974750 GCTCACTAAAAAGTCAACAGTAATATC 57.025 33.333 0.00 0.00 0.00 1.63
3248 3989 9.726438 AGCTCACTAAAAAGTCAACAGTAATAT 57.274 29.630 0.00 0.00 0.00 1.28
3250 3991 9.726438 ATAGCTCACTAAAAAGTCAACAGTAAT 57.274 29.630 0.00 0.00 30.45 1.89
3254 3995 9.371136 TCATATAGCTCACTAAAAAGTCAACAG 57.629 33.333 0.00 0.00 30.45 3.16
3255 3996 9.719355 TTCATATAGCTCACTAAAAAGTCAACA 57.281 29.630 0.00 0.00 30.45 3.33
3271 4012 9.616634 CGCATCACAAATAAAATTCATATAGCT 57.383 29.630 0.00 0.00 0.00 3.32
3272 4013 9.611284 TCGCATCACAAATAAAATTCATATAGC 57.389 29.630 0.00 0.00 0.00 2.97
3278 4019 8.081633 ACTTCTTCGCATCACAAATAAAATTCA 58.918 29.630 0.00 0.00 0.00 2.57
3279 4020 8.452989 ACTTCTTCGCATCACAAATAAAATTC 57.547 30.769 0.00 0.00 0.00 2.17
3282 4023 7.421599 TCAACTTCTTCGCATCACAAATAAAA 58.578 30.769 0.00 0.00 0.00 1.52
3283 4024 6.964908 TCAACTTCTTCGCATCACAAATAAA 58.035 32.000 0.00 0.00 0.00 1.40
3284 4025 6.552859 TCAACTTCTTCGCATCACAAATAA 57.447 33.333 0.00 0.00 0.00 1.40
3285 4026 5.390885 GCTCAACTTCTTCGCATCACAAATA 60.391 40.000 0.00 0.00 0.00 1.40
3286 4027 4.614535 GCTCAACTTCTTCGCATCACAAAT 60.615 41.667 0.00 0.00 0.00 2.32
3287 4028 3.303990 GCTCAACTTCTTCGCATCACAAA 60.304 43.478 0.00 0.00 0.00 2.83
3288 4029 2.224079 GCTCAACTTCTTCGCATCACAA 59.776 45.455 0.00 0.00 0.00 3.33
3290 4031 1.800586 TGCTCAACTTCTTCGCATCAC 59.199 47.619 0.00 0.00 0.00 3.06
3291 4032 1.800586 GTGCTCAACTTCTTCGCATCA 59.199 47.619 0.00 0.00 32.75 3.07
3292 4033 2.072298 AGTGCTCAACTTCTTCGCATC 58.928 47.619 0.00 0.00 34.57 3.91
3294 4035 1.202521 TCAGTGCTCAACTTCTTCGCA 60.203 47.619 0.00 0.00 36.83 5.10
3295 4036 1.458827 CTCAGTGCTCAACTTCTTCGC 59.541 52.381 0.00 0.00 36.83 4.70
3298 4039 3.845781 TTCCTCAGTGCTCAACTTCTT 57.154 42.857 0.00 0.00 36.83 2.52
3299 4040 3.845781 TTTCCTCAGTGCTCAACTTCT 57.154 42.857 0.00 0.00 36.83 2.85
3300 4041 5.241662 AGTATTTCCTCAGTGCTCAACTTC 58.758 41.667 0.00 0.00 36.83 3.01
3301 4042 5.221722 TGAGTATTTCCTCAGTGCTCAACTT 60.222 40.000 0.00 0.00 36.83 2.66
3302 4043 4.284490 TGAGTATTTCCTCAGTGCTCAACT 59.716 41.667 0.00 0.00 40.93 3.16
3304 4045 4.890158 TGAGTATTTCCTCAGTGCTCAA 57.110 40.909 0.00 0.00 36.57 3.02
3305 4046 4.890158 TTGAGTATTTCCTCAGTGCTCA 57.110 40.909 0.00 0.00 42.16 4.26
3307 4048 4.566488 CCCTTTGAGTATTTCCTCAGTGCT 60.566 45.833 0.00 0.00 42.16 4.40
3308 4049 3.691609 CCCTTTGAGTATTTCCTCAGTGC 59.308 47.826 0.00 0.00 42.16 4.40
3309 4050 5.165961 TCCCTTTGAGTATTTCCTCAGTG 57.834 43.478 0.00 0.00 42.16 3.66
3310 4051 5.843019 TTCCCTTTGAGTATTTCCTCAGT 57.157 39.130 0.00 0.00 42.16 3.41
3312 4053 6.071391 GCATTTTCCCTTTGAGTATTTCCTCA 60.071 38.462 0.00 0.00 39.65 3.86
3313 4054 6.333416 GCATTTTCCCTTTGAGTATTTCCTC 58.667 40.000 0.00 0.00 0.00 3.71
3315 4056 5.419542 GGCATTTTCCCTTTGAGTATTTCC 58.580 41.667 0.00 0.00 0.00 3.13
3316 4057 5.102313 CGGCATTTTCCCTTTGAGTATTTC 58.898 41.667 0.00 0.00 0.00 2.17
3319 4060 3.023832 CCGGCATTTTCCCTTTGAGTAT 58.976 45.455 0.00 0.00 0.00 2.12
3320 4061 2.224917 ACCGGCATTTTCCCTTTGAGTA 60.225 45.455 0.00 0.00 0.00 2.59
3323 4064 1.342819 CAACCGGCATTTTCCCTTTGA 59.657 47.619 0.00 0.00 0.00 2.69
3324 4065 1.794512 CAACCGGCATTTTCCCTTTG 58.205 50.000 0.00 0.00 0.00 2.77
3325 4066 0.034756 GCAACCGGCATTTTCCCTTT 59.965 50.000 0.00 0.00 43.97 3.11
3326 4067 1.671166 GCAACCGGCATTTTCCCTT 59.329 52.632 0.00 0.00 43.97 3.95
3337 4078 1.535204 AAAGCCCAATCAGCAACCGG 61.535 55.000 0.00 0.00 0.00 5.28
3338 4079 0.388907 CAAAGCCCAATCAGCAACCG 60.389 55.000 0.00 0.00 0.00 4.44
3340 4081 0.671472 GGCAAAGCCCAATCAGCAAC 60.671 55.000 0.00 0.00 44.06 4.17
3341 4082 1.672898 GGCAAAGCCCAATCAGCAA 59.327 52.632 0.00 0.00 44.06 3.91
3342 4083 3.379880 GGCAAAGCCCAATCAGCA 58.620 55.556 0.00 0.00 44.06 4.41
3352 4093 1.168714 ATTCTCACTTCGGGCAAAGC 58.831 50.000 0.00 0.00 0.00 3.51
3353 4094 5.449177 GGATTAATTCTCACTTCGGGCAAAG 60.449 44.000 0.00 0.00 0.00 2.77
3354 4095 4.398044 GGATTAATTCTCACTTCGGGCAAA 59.602 41.667 0.00 0.00 0.00 3.68
3355 4096 3.945285 GGATTAATTCTCACTTCGGGCAA 59.055 43.478 0.00 0.00 0.00 4.52
3356 4097 3.199946 AGGATTAATTCTCACTTCGGGCA 59.800 43.478 0.00 0.00 0.00 5.36
3357 4098 3.561725 CAGGATTAATTCTCACTTCGGGC 59.438 47.826 0.00 0.00 0.00 6.13
3358 4099 3.561725 GCAGGATTAATTCTCACTTCGGG 59.438 47.826 0.00 0.00 0.00 5.14
3359 4100 4.446371 AGCAGGATTAATTCTCACTTCGG 58.554 43.478 0.00 0.00 0.00 4.30
3360 4101 4.509600 GGAGCAGGATTAATTCTCACTTCG 59.490 45.833 0.00 0.00 0.00 3.79
3361 4102 5.679601 AGGAGCAGGATTAATTCTCACTTC 58.320 41.667 0.00 0.00 0.00 3.01
3362 4103 5.707066 AGGAGCAGGATTAATTCTCACTT 57.293 39.130 0.00 0.00 0.00 3.16
3363 4104 6.814954 TTAGGAGCAGGATTAATTCTCACT 57.185 37.500 0.00 0.00 0.00 3.41
3380 4121 1.077429 GGTGGCCAAGGCTTAGGAG 60.077 63.158 7.24 0.00 41.60 3.69
3382 4123 1.077429 GAGGTGGCCAAGGCTTAGG 60.077 63.158 7.24 5.38 41.60 2.69
3383 4124 1.077429 GGAGGTGGCCAAGGCTTAG 60.077 63.158 7.24 0.00 41.60 2.18
3384 4125 0.252974 TAGGAGGTGGCCAAGGCTTA 60.253 55.000 7.24 0.00 41.60 3.09
3386 4127 2.124996 TAGGAGGTGGCCAAGGCT 59.875 61.111 7.24 0.00 41.60 4.58
3387 4128 0.981277 TAGTAGGAGGTGGCCAAGGC 60.981 60.000 7.24 1.52 41.06 4.35
3388 4129 0.831307 GTAGTAGGAGGTGGCCAAGG 59.169 60.000 7.24 0.00 0.00 3.61
3389 4130 1.568504 TGTAGTAGGAGGTGGCCAAG 58.431 55.000 7.24 0.00 0.00 3.61
3390 4131 2.032965 TTGTAGTAGGAGGTGGCCAA 57.967 50.000 7.24 0.00 0.00 4.52
3392 4133 1.907255 AGTTTGTAGTAGGAGGTGGCC 59.093 52.381 0.00 0.00 0.00 5.36
3393 4134 3.697619 AAGTTTGTAGTAGGAGGTGGC 57.302 47.619 0.00 0.00 0.00 5.01
3394 4135 4.969484 ACAAAGTTTGTAGTAGGAGGTGG 58.031 43.478 19.59 0.00 43.27 4.61
3395 4136 5.277828 GCAACAAAGTTTGTAGTAGGAGGTG 60.278 44.000 21.14 13.02 44.59 4.00
3397 4138 5.063880 AGCAACAAAGTTTGTAGTAGGAGG 58.936 41.667 21.14 5.69 44.59 4.30
3399 4140 5.925509 AGAGCAACAAAGTTTGTAGTAGGA 58.074 37.500 21.14 0.00 44.59 2.94
3400 4141 7.907214 ATAGAGCAACAAAGTTTGTAGTAGG 57.093 36.000 21.14 9.97 44.59 3.18
3404 4145 9.599322 CAACTAATAGAGCAACAAAGTTTGTAG 57.401 33.333 21.14 13.37 44.59 2.74
3405 4146 9.332502 TCAACTAATAGAGCAACAAAGTTTGTA 57.667 29.630 21.14 5.43 44.59 2.41
3407 4148 9.121517 CATCAACTAATAGAGCAACAAAGTTTG 57.878 33.333 14.13 14.13 0.00 2.93
3408 4149 8.299570 CCATCAACTAATAGAGCAACAAAGTTT 58.700 33.333 0.00 0.00 0.00 2.66
3409 4150 7.665559 TCCATCAACTAATAGAGCAACAAAGTT 59.334 33.333 0.00 0.00 0.00 2.66
3412 4153 8.049117 AGATCCATCAACTAATAGAGCAACAAA 58.951 33.333 0.00 0.00 0.00 2.83
3413 4154 7.568349 AGATCCATCAACTAATAGAGCAACAA 58.432 34.615 0.00 0.00 0.00 2.83
3414 4155 7.129457 AGATCCATCAACTAATAGAGCAACA 57.871 36.000 0.00 0.00 0.00 3.33
3417 4158 9.547753 GTAAAAGATCCATCAACTAATAGAGCA 57.452 33.333 0.00 0.00 0.00 4.26
3418 4159 9.547753 TGTAAAAGATCCATCAACTAATAGAGC 57.452 33.333 0.00 0.00 0.00 4.09
3429 4170 8.689061 CCAGAATCAATTGTAAAAGATCCATCA 58.311 33.333 5.13 0.00 0.00 3.07
3432 4173 6.404623 CGCCAGAATCAATTGTAAAAGATCCA 60.405 38.462 5.13 0.00 0.00 3.41
3433 4174 5.973565 CGCCAGAATCAATTGTAAAAGATCC 59.026 40.000 5.13 0.00 0.00 3.36
3434 4175 5.456822 GCGCCAGAATCAATTGTAAAAGATC 59.543 40.000 5.13 0.00 0.00 2.75
3435 4176 5.343249 GCGCCAGAATCAATTGTAAAAGAT 58.657 37.500 5.13 0.00 0.00 2.40
3438 4179 3.671971 CGGCGCCAGAATCAATTGTAAAA 60.672 43.478 28.98 0.00 0.00 1.52
3439 4180 2.159448 CGGCGCCAGAATCAATTGTAAA 60.159 45.455 28.98 0.00 0.00 2.01
3440 4181 1.400142 CGGCGCCAGAATCAATTGTAA 59.600 47.619 28.98 0.00 0.00 2.41
3441 4182 1.013596 CGGCGCCAGAATCAATTGTA 58.986 50.000 28.98 0.00 0.00 2.41
3442 4183 1.802636 CGGCGCCAGAATCAATTGT 59.197 52.632 28.98 0.00 0.00 2.71
3443 4184 1.587088 GCGGCGCCAGAATCAATTG 60.587 57.895 28.98 6.77 0.00 2.32
3444 4185 1.594194 TTGCGGCGCCAGAATCAATT 61.594 50.000 30.82 0.00 0.00 2.32
3445 4186 2.045708 TTGCGGCGCCAGAATCAAT 61.046 52.632 30.82 0.00 0.00 2.57
3447 4188 3.430862 GTTGCGGCGCCAGAATCA 61.431 61.111 30.82 12.54 0.00 2.57
3449 4190 2.884997 TATGGTTGCGGCGCCAGAAT 62.885 55.000 30.82 19.36 38.27 2.40
3450 4191 3.613877 TATGGTTGCGGCGCCAGAA 62.614 57.895 30.82 15.50 38.27 3.02
3451 4192 4.089239 TATGGTTGCGGCGCCAGA 62.089 61.111 30.82 14.82 38.27 3.86
3452 4193 3.576356 CTATGGTTGCGGCGCCAG 61.576 66.667 30.82 20.12 38.27 4.85
3455 4196 4.849310 TCCCTATGGTTGCGGCGC 62.849 66.667 27.44 27.44 0.00 6.53
3457 4198 0.250901 ATCATCCCTATGGTTGCGGC 60.251 55.000 0.00 0.00 33.61 6.53
3458 4199 2.303022 AGTATCATCCCTATGGTTGCGG 59.697 50.000 0.00 0.00 33.61 5.69
3459 4200 3.685139 AGTATCATCCCTATGGTTGCG 57.315 47.619 0.00 0.00 33.61 4.85
3461 4202 5.799213 GAGGAAGTATCATCCCTATGGTTG 58.201 45.833 0.00 0.00 37.71 3.77
3471 4212 7.987458 TCACTTTTACATGGAGGAAGTATCATC 59.013 37.037 8.08 0.00 35.65 2.92
3472 4213 7.861629 TCACTTTTACATGGAGGAAGTATCAT 58.138 34.615 8.08 0.00 0.00 2.45
3473 4214 7.252612 TCACTTTTACATGGAGGAAGTATCA 57.747 36.000 8.08 0.00 0.00 2.15
3475 4216 6.653989 CCTCACTTTTACATGGAGGAAGTAT 58.346 40.000 8.08 0.00 46.38 2.12
3476 4217 6.049955 CCTCACTTTTACATGGAGGAAGTA 57.950 41.667 8.08 0.00 46.38 2.24
3477 4218 4.911390 CCTCACTTTTACATGGAGGAAGT 58.089 43.478 6.15 4.84 46.38 3.01
3481 4222 5.102953 TCATCCTCACTTTTACATGGAGG 57.897 43.478 0.00 1.41 45.15 4.30
3482 4223 5.121811 CCTCATCCTCACTTTTACATGGAG 58.878 45.833 0.00 0.00 0.00 3.86
3484 4225 4.080356 TCCCTCATCCTCACTTTTACATGG 60.080 45.833 0.00 0.00 0.00 3.66
3485 4226 4.878397 GTCCCTCATCCTCACTTTTACATG 59.122 45.833 0.00 0.00 0.00 3.21
3540 4969 5.470368 TGTCAAACGTTTTCCAATGTGAAA 58.530 33.333 11.66 0.00 32.07 2.69
3541 4970 5.060662 TGTCAAACGTTTTCCAATGTGAA 57.939 34.783 11.66 0.00 32.07 3.18
3542 4971 4.703645 TGTCAAACGTTTTCCAATGTGA 57.296 36.364 11.66 0.38 32.07 3.58
3543 4972 5.124847 GTTGTCAAACGTTTTCCAATGTG 57.875 39.130 19.38 5.87 32.07 3.21
3556 4985 2.353030 GGCGCACCGTTGTCAAAC 60.353 61.111 10.83 0.00 0.00 2.93
3575 5004 4.090057 GACCAGCGCAAACTCGGC 62.090 66.667 11.47 0.00 0.00 5.54
3576 5005 2.664851 TGACCAGCGCAAACTCGG 60.665 61.111 11.47 2.02 0.00 4.63
3577 5006 2.243957 TGTGACCAGCGCAAACTCG 61.244 57.895 11.47 0.00 33.24 4.18
3578 5007 1.279840 GTGTGACCAGCGCAAACTC 59.720 57.895 11.47 0.00 39.02 3.01
3579 5008 2.534019 CGTGTGACCAGCGCAAACT 61.534 57.895 11.47 0.00 39.02 2.66
3580 5009 2.052237 CGTGTGACCAGCGCAAAC 60.052 61.111 11.47 0.09 39.02 2.93
3587 5016 3.406361 GACGCAGCGTGTGACCAG 61.406 66.667 28.57 0.00 41.37 4.00
3636 5065 1.710816 TTTAGTGGCTGTTTTGGGGG 58.289 50.000 0.00 0.00 0.00 5.40
3637 5066 4.064388 CAAATTTAGTGGCTGTTTTGGGG 58.936 43.478 0.00 0.00 0.00 4.96
3638 5067 4.511082 CACAAATTTAGTGGCTGTTTTGGG 59.489 41.667 10.92 0.00 33.43 4.12
3639 5068 5.355596 TCACAAATTTAGTGGCTGTTTTGG 58.644 37.500 15.89 0.00 37.58 3.28
3640 5069 5.463061 CCTCACAAATTTAGTGGCTGTTTTG 59.537 40.000 15.89 0.00 37.58 2.44
3641 5070 5.453198 CCCTCACAAATTTAGTGGCTGTTTT 60.453 40.000 15.89 0.00 37.58 2.43
3642 5071 4.039124 CCCTCACAAATTTAGTGGCTGTTT 59.961 41.667 15.89 0.00 37.58 2.83
3643 5072 3.573967 CCCTCACAAATTTAGTGGCTGTT 59.426 43.478 15.89 0.00 37.58 3.16
3644 5073 3.157087 CCCTCACAAATTTAGTGGCTGT 58.843 45.455 15.89 0.00 37.58 4.40
3645 5074 3.057315 CACCCTCACAAATTTAGTGGCTG 60.057 47.826 15.89 6.45 37.58 4.85
3646 5075 3.157087 CACCCTCACAAATTTAGTGGCT 58.843 45.455 15.89 0.00 37.58 4.75
3647 5076 3.153919 TCACCCTCACAAATTTAGTGGC 58.846 45.455 15.89 0.00 37.58 5.01
3648 5077 4.216257 CACTCACCCTCACAAATTTAGTGG 59.784 45.833 15.89 10.58 37.58 4.00
3649 5078 4.216257 CCACTCACCCTCACAAATTTAGTG 59.784 45.833 12.01 12.01 38.32 2.74
3650 5079 4.104102 TCCACTCACCCTCACAAATTTAGT 59.896 41.667 0.00 0.00 0.00 2.24
3651 5080 4.651778 TCCACTCACCCTCACAAATTTAG 58.348 43.478 0.00 0.00 0.00 1.85
3652 5081 4.715534 TCCACTCACCCTCACAAATTTA 57.284 40.909 0.00 0.00 0.00 1.40
3653 5082 3.593442 TCCACTCACCCTCACAAATTT 57.407 42.857 0.00 0.00 0.00 1.82
3654 5083 3.138283 TCTTCCACTCACCCTCACAAATT 59.862 43.478 0.00 0.00 0.00 1.82
3655 5084 2.711009 TCTTCCACTCACCCTCACAAAT 59.289 45.455 0.00 0.00 0.00 2.32
3656 5085 2.123589 TCTTCCACTCACCCTCACAAA 58.876 47.619 0.00 0.00 0.00 2.83
3657 5086 1.801242 TCTTCCACTCACCCTCACAA 58.199 50.000 0.00 0.00 0.00 3.33
3658 5087 1.416401 GTTCTTCCACTCACCCTCACA 59.584 52.381 0.00 0.00 0.00 3.58
3659 5088 1.416401 TGTTCTTCCACTCACCCTCAC 59.584 52.381 0.00 0.00 0.00 3.51
3660 5089 1.416401 GTGTTCTTCCACTCACCCTCA 59.584 52.381 0.00 0.00 32.50 3.86
3661 5090 1.605712 CGTGTTCTTCCACTCACCCTC 60.606 57.143 0.00 0.00 33.07 4.30
3662 5091 0.393077 CGTGTTCTTCCACTCACCCT 59.607 55.000 0.00 0.00 33.07 4.34
3663 5092 0.391597 TCGTGTTCTTCCACTCACCC 59.608 55.000 0.00 0.00 33.07 4.61
3664 5093 1.784525 CTCGTGTTCTTCCACTCACC 58.215 55.000 0.00 0.00 33.07 4.02
3665 5094 1.140816 GCTCGTGTTCTTCCACTCAC 58.859 55.000 0.00 0.00 33.07 3.51
3666 5095 0.318699 CGCTCGTGTTCTTCCACTCA 60.319 55.000 0.00 0.00 33.07 3.41
3667 5096 0.039437 TCGCTCGTGTTCTTCCACTC 60.039 55.000 0.00 0.00 33.07 3.51
3668 5097 0.039074 CTCGCTCGTGTTCTTCCACT 60.039 55.000 0.00 0.00 33.07 4.00
3669 5098 1.009389 CCTCGCTCGTGTTCTTCCAC 61.009 60.000 0.00 0.00 0.00 4.02
3670 5099 1.289066 CCTCGCTCGTGTTCTTCCA 59.711 57.895 0.00 0.00 0.00 3.53
3671 5100 1.009389 CACCTCGCTCGTGTTCTTCC 61.009 60.000 0.00 0.00 0.00 3.46
3672 5101 1.618640 GCACCTCGCTCGTGTTCTTC 61.619 60.000 0.00 0.00 37.77 2.87
3673 5102 1.664965 GCACCTCGCTCGTGTTCTT 60.665 57.895 0.00 0.00 37.77 2.52
3674 5103 2.049063 GCACCTCGCTCGTGTTCT 60.049 61.111 0.00 0.00 37.77 3.01
3683 5112 1.805945 CTCCGTAACAGCACCTCGC 60.806 63.158 0.00 0.00 42.91 5.03
3684 5113 1.805945 GCTCCGTAACAGCACCTCG 60.806 63.158 0.00 0.00 36.82 4.63
3685 5114 0.737715 CAGCTCCGTAACAGCACCTC 60.738 60.000 0.00 0.00 39.56 3.85
3686 5115 1.293498 CAGCTCCGTAACAGCACCT 59.707 57.895 0.00 0.00 39.56 4.00
3687 5116 1.741770 CCAGCTCCGTAACAGCACC 60.742 63.158 0.00 0.00 39.56 5.01
3688 5117 1.741770 CCCAGCTCCGTAACAGCAC 60.742 63.158 0.00 0.00 39.56 4.40
3689 5118 2.662596 CCCAGCTCCGTAACAGCA 59.337 61.111 0.00 0.00 39.56 4.41
3690 5119 2.125106 CCCCAGCTCCGTAACAGC 60.125 66.667 0.00 0.00 37.12 4.40
3691 5120 2.291043 ACCCCCAGCTCCGTAACAG 61.291 63.158 0.00 0.00 0.00 3.16
3692 5121 2.203877 ACCCCCAGCTCCGTAACA 60.204 61.111 0.00 0.00 0.00 2.41
3693 5122 2.267961 CACCCCCAGCTCCGTAAC 59.732 66.667 0.00 0.00 0.00 2.50
3694 5123 2.808761 TAGCACCCCCAGCTCCGTAA 62.809 60.000 0.00 0.00 42.32 3.18
3695 5124 3.305619 TAGCACCCCCAGCTCCGTA 62.306 63.158 0.00 0.00 42.32 4.02
3696 5125 4.715130 TAGCACCCCCAGCTCCGT 62.715 66.667 0.00 0.00 42.32 4.69
3697 5126 4.162690 GTAGCACCCCCAGCTCCG 62.163 72.222 0.00 0.00 42.32 4.63
3698 5127 2.258748 GAAGTAGCACCCCCAGCTCC 62.259 65.000 0.00 0.00 42.32 4.70
3699 5128 1.222113 GAAGTAGCACCCCCAGCTC 59.778 63.158 0.00 0.00 42.32 4.09
3700 5129 2.301738 GGAAGTAGCACCCCCAGCT 61.302 63.158 0.00 0.00 45.77 4.24
3701 5130 2.272471 GGAAGTAGCACCCCCAGC 59.728 66.667 0.00 0.00 0.00 4.85
3702 5131 1.299976 GTGGAAGTAGCACCCCCAG 59.700 63.158 0.00 0.00 0.00 4.45
3703 5132 2.228480 GGTGGAAGTAGCACCCCCA 61.228 63.158 0.00 0.00 33.11 4.96
3704 5133 1.911702 GAGGTGGAAGTAGCACCCCC 61.912 65.000 0.00 0.00 39.70 5.40
3705 5134 1.602771 GAGGTGGAAGTAGCACCCC 59.397 63.158 0.00 0.00 39.70 4.95
3706 5135 0.910088 AGGAGGTGGAAGTAGCACCC 60.910 60.000 0.00 0.00 39.70 4.61
3707 5136 0.537653 GAGGAGGTGGAAGTAGCACC 59.462 60.000 0.00 0.00 39.18 5.01
3708 5137 1.205893 CAGAGGAGGTGGAAGTAGCAC 59.794 57.143 0.00 0.00 0.00 4.40
3709 5138 1.561643 CAGAGGAGGTGGAAGTAGCA 58.438 55.000 0.00 0.00 0.00 3.49
3710 5139 0.176910 GCAGAGGAGGTGGAAGTAGC 59.823 60.000 0.00 0.00 0.00 3.58
3711 5140 0.457851 CGCAGAGGAGGTGGAAGTAG 59.542 60.000 0.00 0.00 0.00 2.57
3712 5141 0.039180 TCGCAGAGGAGGTGGAAGTA 59.961 55.000 0.00 0.00 0.00 2.24
3713 5142 1.228894 TCGCAGAGGAGGTGGAAGT 60.229 57.895 0.00 0.00 0.00 3.01
3714 5143 1.216710 GTCGCAGAGGAGGTGGAAG 59.783 63.158 0.00 0.00 36.95 3.46
3715 5144 1.228894 AGTCGCAGAGGAGGTGGAA 60.229 57.895 0.00 0.00 36.95 3.53
3716 5145 1.979155 CAGTCGCAGAGGAGGTGGA 60.979 63.158 0.00 0.00 36.95 4.02
3717 5146 2.575993 CAGTCGCAGAGGAGGTGG 59.424 66.667 0.00 0.00 36.95 4.61
3718 5147 2.125753 GCAGTCGCAGAGGAGGTG 60.126 66.667 0.00 0.00 36.95 4.00
3719 5148 3.753434 CGCAGTCGCAGAGGAGGT 61.753 66.667 0.00 0.00 36.95 3.85
3720 5149 4.504916 CCGCAGTCGCAGAGGAGG 62.505 72.222 0.00 0.00 36.95 4.30
3754 5183 4.722700 ATGGTGACCAGCGGCACC 62.723 66.667 11.23 21.88 44.33 5.01
3755 5184 3.434319 CATGGTGACCAGCGGCAC 61.434 66.667 11.23 10.95 36.75 5.01
3756 5185 3.952508 ACATGGTGACCAGCGGCA 61.953 61.111 11.23 0.00 36.75 5.69
3757 5186 3.434319 CACATGGTGACCAGCGGC 61.434 66.667 11.23 0.00 36.75 6.53
3758 5187 3.434319 GCACATGGTGACCAGCGG 61.434 66.667 11.23 4.77 36.75 5.52
3759 5188 2.359107 AGCACATGGTGACCAGCG 60.359 61.111 11.23 6.36 36.75 5.18
3760 5189 2.338015 CCAGCACATGGTGACCAGC 61.338 63.158 11.23 8.45 45.66 4.85
3761 5190 3.991999 CCAGCACATGGTGACCAG 58.008 61.111 11.23 4.99 45.66 4.00
3769 5198 2.747460 CCACGGTCCCAGCACATG 60.747 66.667 0.00 0.00 0.00 3.21
3770 5199 3.249189 ACCACGGTCCCAGCACAT 61.249 61.111 0.00 0.00 0.00 3.21
3771 5200 3.936203 GACCACGGTCCCAGCACA 61.936 66.667 4.78 0.00 39.08 4.57
3772 5201 3.936203 TGACCACGGTCCCAGCAC 61.936 66.667 13.60 0.00 43.97 4.40
3773 5202 3.936203 GTGACCACGGTCCCAGCA 61.936 66.667 13.60 0.00 43.97 4.41
3774 5203 4.699522 GGTGACCACGGTCCCAGC 62.700 72.222 13.60 2.78 43.97 4.85
3775 5204 4.373116 CGGTGACCACGGTCCCAG 62.373 72.222 13.60 0.00 43.97 4.45
3787 5216 4.717629 CTTCTCGGTGCGCGGTGA 62.718 66.667 8.83 5.15 0.00 4.02
3792 5221 4.742201 TCCAGCTTCTCGGTGCGC 62.742 66.667 0.00 0.00 39.77 6.09
3793 5222 2.048222 TTCCAGCTTCTCGGTGCG 60.048 61.111 0.00 0.00 39.77 5.34
3794 5223 1.004440 AGTTCCAGCTTCTCGGTGC 60.004 57.895 0.00 0.00 39.77 5.01
3795 5224 0.318441 TCAGTTCCAGCTTCTCGGTG 59.682 55.000 0.00 0.00 40.77 4.94
3796 5225 1.066573 CATCAGTTCCAGCTTCTCGGT 60.067 52.381 0.00 0.00 0.00 4.69
3797 5226 1.649664 CATCAGTTCCAGCTTCTCGG 58.350 55.000 0.00 0.00 0.00 4.63
3798 5227 1.005340 GCATCAGTTCCAGCTTCTCG 58.995 55.000 0.00 0.00 0.00 4.04
3799 5228 1.736681 GTGCATCAGTTCCAGCTTCTC 59.263 52.381 0.00 0.00 0.00 2.87
3800 5229 1.350351 AGTGCATCAGTTCCAGCTTCT 59.650 47.619 0.00 0.00 0.00 2.85
3801 5230 1.467734 CAGTGCATCAGTTCCAGCTTC 59.532 52.381 0.00 0.00 0.00 3.86
3802 5231 1.072806 TCAGTGCATCAGTTCCAGCTT 59.927 47.619 0.00 0.00 0.00 3.74
3803 5232 0.689055 TCAGTGCATCAGTTCCAGCT 59.311 50.000 0.00 0.00 0.00 4.24
3804 5233 1.085091 CTCAGTGCATCAGTTCCAGC 58.915 55.000 0.00 0.00 0.00 4.85
3805 5234 1.678123 CCCTCAGTGCATCAGTTCCAG 60.678 57.143 0.00 0.00 0.00 3.86
3806 5235 0.325933 CCCTCAGTGCATCAGTTCCA 59.674 55.000 0.00 0.00 0.00 3.53
3807 5236 1.028868 GCCCTCAGTGCATCAGTTCC 61.029 60.000 0.00 0.00 0.00 3.62
3808 5237 0.321919 TGCCCTCAGTGCATCAGTTC 60.322 55.000 0.00 0.00 32.85 3.01
3809 5238 0.330604 ATGCCCTCAGTGCATCAGTT 59.669 50.000 0.00 0.00 46.04 3.16
3810 5239 1.996900 ATGCCCTCAGTGCATCAGT 59.003 52.632 0.00 0.00 46.04 3.41
3811 5240 4.979657 ATGCCCTCAGTGCATCAG 57.020 55.556 0.00 0.00 46.04 2.90
3815 5244 1.907222 CTGGAGATGCCCTCAGTGCA 61.907 60.000 5.71 0.00 43.76 4.57
3816 5245 1.153208 CTGGAGATGCCCTCAGTGC 60.153 63.158 5.71 0.00 43.76 4.40
3817 5246 1.153208 GCTGGAGATGCCCTCAGTG 60.153 63.158 5.71 0.00 43.76 3.66
3818 5247 2.373707 GGCTGGAGATGCCCTCAGT 61.374 63.158 5.71 0.00 44.32 3.41
3819 5248 2.509916 GGCTGGAGATGCCCTCAG 59.490 66.667 5.71 0.00 44.32 3.35
3824 5253 2.892425 CGAACGGCTGGAGATGCC 60.892 66.667 0.00 0.00 46.42 4.40
3825 5254 2.892425 CCGAACGGCTGGAGATGC 60.892 66.667 0.00 0.00 0.00 3.91
3845 5274 1.073199 CTATTTAGGCGCCCTGGGG 59.927 63.158 26.15 5.60 34.61 4.96
3846 5275 0.035458 CTCTATTTAGGCGCCCTGGG 59.965 60.000 26.15 8.86 34.61 4.45
3847 5276 0.603975 GCTCTATTTAGGCGCCCTGG 60.604 60.000 26.15 7.92 34.61 4.45
3848 5277 0.946221 CGCTCTATTTAGGCGCCCTG 60.946 60.000 26.15 7.22 42.28 4.45
3849 5278 1.367840 CGCTCTATTTAGGCGCCCT 59.632 57.895 26.15 13.52 42.28 5.19
3850 5279 1.668151 CCGCTCTATTTAGGCGCCC 60.668 63.158 26.15 5.07 46.29 6.13
3851 5280 3.952811 CCGCTCTATTTAGGCGCC 58.047 61.111 21.89 21.89 46.29 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.