Multiple sequence alignment - TraesCS6A01G318900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G318900 chr6A 100.000 3200 0 0 1 3200 554714972 554718171 0.000000e+00 5910.0
1 TraesCS6A01G318900 chr6A 87.043 2269 161 61 21 2211 554786315 554788528 0.000000e+00 2438.0
2 TraesCS6A01G318900 chr6A 100.000 28 0 0 3088 3115 212032554 212032527 6.000000e-03 52.8
3 TraesCS6A01G318900 chr6B 86.735 2254 166 69 30 2211 614126473 614128665 0.000000e+00 2383.0
4 TraesCS6A01G318900 chr6B 93.082 1142 52 10 1180 2317 613610324 613611442 0.000000e+00 1646.0
5 TraesCS6A01G318900 chr6B 86.645 629 48 17 544 1149 613609707 613610322 0.000000e+00 664.0
6 TraesCS6A01G318900 chr6B 83.746 283 17 7 2317 2589 613616564 613616827 1.150000e-59 241.0
7 TraesCS6A01G318900 chr6B 81.308 321 37 17 85 393 613609295 613609604 4.130000e-59 239.0
8 TraesCS6A01G318900 chr6B 92.800 125 8 1 2576 2700 613628141 613628264 2.540000e-41 180.0
9 TraesCS6A01G318900 chr6D 89.085 1814 117 39 446 2211 409287349 409289129 0.000000e+00 2178.0
10 TraesCS6A01G318900 chr6D 94.636 839 39 4 1404 2241 408945920 408946753 0.000000e+00 1295.0
11 TraesCS6A01G318900 chr6D 89.644 618 40 11 544 1149 408945056 408945661 0.000000e+00 765.0
12 TraesCS6A01G318900 chr6D 87.769 605 41 14 2237 2839 408946909 408947482 0.000000e+00 676.0
13 TraesCS6A01G318900 chr6D 89.017 346 31 2 2861 3200 408948199 408948543 3.820000e-114 422.0
14 TraesCS6A01G318900 chr6D 90.496 242 15 7 1180 1417 408945663 408945900 2.400000e-81 313.0
15 TraesCS6A01G318900 chr6D 85.616 292 31 8 21 308 409286836 409287120 2.410000e-76 296.0
16 TraesCS6A01G318900 chr7B 79.284 391 68 10 1472 1856 97192581 97192964 8.800000e-66 261.0
17 TraesCS6A01G318900 chr7A 79.124 388 68 10 1475 1856 134491662 134492042 4.100000e-64 255.0
18 TraesCS6A01G318900 chr7D 78.608 388 70 10 1475 1856 135357778 135358158 8.870000e-61 244.0
19 TraesCS6A01G318900 chr1B 81.356 118 22 0 1477 1594 615744798 615744681 2.630000e-16 97.1
20 TraesCS6A01G318900 chr5B 89.796 49 5 0 220 268 100034759 100034711 2.660000e-06 63.9
21 TraesCS6A01G318900 chr4D 89.796 49 5 0 220 268 464371292 464371340 2.660000e-06 63.9
22 TraesCS6A01G318900 chr4A 100.000 29 0 0 3088 3116 688486890 688486862 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G318900 chr6A 554714972 554718171 3199 False 5910.000000 5910 100.000000 1 3200 1 chr6A.!!$F1 3199
1 TraesCS6A01G318900 chr6A 554786315 554788528 2213 False 2438.000000 2438 87.043000 21 2211 1 chr6A.!!$F2 2190
2 TraesCS6A01G318900 chr6B 614126473 614128665 2192 False 2383.000000 2383 86.735000 30 2211 1 chr6B.!!$F3 2181
3 TraesCS6A01G318900 chr6B 613609295 613611442 2147 False 849.666667 1646 87.011667 85 2317 3 chr6B.!!$F4 2232
4 TraesCS6A01G318900 chr6D 409286836 409289129 2293 False 1237.000000 2178 87.350500 21 2211 2 chr6D.!!$F2 2190
5 TraesCS6A01G318900 chr6D 408945056 408948543 3487 False 694.200000 1295 90.312400 544 3200 5 chr6D.!!$F1 2656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
670 823 0.110056 CAACGTGACTGCTGATTGCC 60.110 55.0 0.00 0.00 42.0 4.52 F
1062 1250 0.250901 GCCCTTGGACAGCTGAAGAA 60.251 55.0 23.35 8.22 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1893 2143 0.452987 CCAAGTCATGGCCATTGACG 59.547 55.0 27.77 19.94 43.80 4.35 R
2432 2858 0.678366 ACGTGTTGAACCAAGTGGCA 60.678 50.0 0.00 0.00 39.32 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 2.352651 CCATACGCAGGTTTGTCATCTG 59.647 50.000 0.00 0.00 0.00 2.90
74 75 1.171308 CAGGTTTGTCATCTGCTGGG 58.829 55.000 0.00 0.00 0.00 4.45
81 82 1.076559 TCATCTGCTGGGCCCATTG 60.077 57.895 28.82 16.82 0.00 2.82
94 95 2.760092 GGCCCATTGCATACTTGAGAAA 59.240 45.455 0.00 0.00 43.89 2.52
96 97 4.322650 GGCCCATTGCATACTTGAGAAAAA 60.323 41.667 0.00 0.00 43.89 1.94
98 99 4.866486 CCCATTGCATACTTGAGAAAAAGC 59.134 41.667 0.00 0.00 0.00 3.51
112 113 6.110033 TGAGAAAAAGCTATACGCCAACATA 58.890 36.000 0.00 0.00 40.39 2.29
142 143 5.960811 TGATATCCCAGGAATCTAGTCATCC 59.039 44.000 0.00 0.00 0.00 3.51
215 220 7.625469 TGGTGTATAAAATAGGTGTCATGTGA 58.375 34.615 0.00 0.00 0.00 3.58
243 248 7.145985 AGTACAATGTCGCGAATACAATATCT 58.854 34.615 12.06 0.00 0.00 1.98
250 255 7.368059 TGTCGCGAATACAATATCTACAGATT 58.632 34.615 12.06 0.00 36.05 2.40
254 259 7.952101 CGCGAATACAATATCTACAGATTTTGG 59.048 37.037 19.77 8.33 43.25 3.28
255 260 8.988934 GCGAATACAATATCTACAGATTTTGGA 58.011 33.333 19.77 14.88 43.25 3.53
259 264 6.904626 ACAATATCTACAGATTTTGGAGGCT 58.095 36.000 19.77 0.00 43.25 4.58
260 265 6.769822 ACAATATCTACAGATTTTGGAGGCTG 59.230 38.462 19.77 0.00 43.25 4.85
261 266 2.991250 TCTACAGATTTTGGAGGCTGC 58.009 47.619 0.00 0.00 38.39 5.25
262 267 2.573462 TCTACAGATTTTGGAGGCTGCT 59.427 45.455 7.74 0.00 38.39 4.24
263 268 3.774766 TCTACAGATTTTGGAGGCTGCTA 59.225 43.478 7.74 0.00 38.39 3.49
273 278 3.024547 TGGAGGCTGCTACTACAACTAG 58.975 50.000 7.74 0.00 0.00 2.57
275 280 3.316868 GGAGGCTGCTACTACAACTAGAG 59.683 52.174 0.00 0.00 0.00 2.43
277 282 5.113446 AGGCTGCTACTACAACTAGAGTA 57.887 43.478 0.00 0.00 0.00 2.59
280 285 5.220892 GGCTGCTACTACAACTAGAGTACAG 60.221 48.000 0.00 5.84 34.24 2.74
315 320 4.183101 AGTTGTTGAAATTGCACCACTTG 58.817 39.130 0.00 0.00 0.00 3.16
336 465 8.184192 CACTTGTATGTCTTTGGAATTGATACC 58.816 37.037 0.00 0.00 0.00 2.73
337 466 7.888021 ACTTGTATGTCTTTGGAATTGATACCA 59.112 33.333 0.00 0.00 0.00 3.25
354 483 2.344592 ACCATACACTTCCAGGAACCA 58.655 47.619 0.00 0.00 0.00 3.67
386 516 8.926374 TGGAACATTTGCTCATTTTATATGGAT 58.074 29.630 0.00 0.00 0.00 3.41
387 517 9.415544 GGAACATTTGCTCATTTTATATGGATC 57.584 33.333 0.00 0.00 0.00 3.36
393 523 6.973843 TGCTCATTTTATATGGATCAACAGC 58.026 36.000 0.00 0.00 0.00 4.40
396 526 5.774690 TCATTTTATATGGATCAACAGCCCC 59.225 40.000 0.00 0.00 0.00 5.80
397 527 3.806949 TTATATGGATCAACAGCCCCC 57.193 47.619 0.00 0.00 0.00 5.40
398 528 1.838611 ATATGGATCAACAGCCCCCT 58.161 50.000 0.00 0.00 0.00 4.79
399 529 1.140312 TATGGATCAACAGCCCCCTC 58.860 55.000 0.00 0.00 0.00 4.30
400 530 1.649271 ATGGATCAACAGCCCCCTCC 61.649 60.000 0.00 0.00 0.00 4.30
426 556 8.940397 CCCCCAGAAAGTAATAATCACAATAT 57.060 34.615 0.00 0.00 0.00 1.28
466 600 9.920946 ATAAAACAACATATGGTAGGAGATGTT 57.079 29.630 7.80 0.00 41.92 2.71
542 683 8.807118 TCTTAAATGTTATAACACCCAATGCAA 58.193 29.630 20.26 5.93 42.51 4.08
574 727 5.499139 TTGCAGAGAAGAACAACGAAAAT 57.501 34.783 0.00 0.00 0.00 1.82
576 729 6.801539 TGCAGAGAAGAACAACGAAAATAT 57.198 33.333 0.00 0.00 0.00 1.28
666 819 5.521906 ACTATATCAACGTGACTGCTGAT 57.478 39.130 0.00 3.83 33.26 2.90
670 823 0.110056 CAACGTGACTGCTGATTGCC 60.110 55.000 0.00 0.00 42.00 4.52
671 824 1.237285 AACGTGACTGCTGATTGCCC 61.237 55.000 0.00 0.00 42.00 5.36
672 825 1.376424 CGTGACTGCTGATTGCCCT 60.376 57.895 0.00 0.00 42.00 5.19
673 826 1.364626 CGTGACTGCTGATTGCCCTC 61.365 60.000 0.00 0.00 42.00 4.30
675 828 0.694771 TGACTGCTGATTGCCCTCTT 59.305 50.000 0.00 0.00 42.00 2.85
676 829 1.908619 TGACTGCTGATTGCCCTCTTA 59.091 47.619 0.00 0.00 42.00 2.10
677 830 2.507058 TGACTGCTGATTGCCCTCTTAT 59.493 45.455 0.00 0.00 42.00 1.73
733 898 3.454812 GCCCTTATCTTAGTGTGGAGGAA 59.545 47.826 0.00 0.00 0.00 3.36
734 899 4.683671 GCCCTTATCTTAGTGTGGAGGAAC 60.684 50.000 0.00 0.00 0.00 3.62
790 976 7.591821 ACCCAAATTATCTAAGGGCAGATTAA 58.408 34.615 0.00 0.00 43.47 1.40
792 978 9.753674 CCCAAATTATCTAAGGGCAGATTAATA 57.246 33.333 0.00 0.00 36.63 0.98
970 1158 0.548926 TCCCACCTGCACCATCCTAA 60.549 55.000 0.00 0.00 0.00 2.69
972 1160 0.394352 CCACCTGCACCATCCTAACC 60.394 60.000 0.00 0.00 0.00 2.85
973 1161 0.394352 CACCTGCACCATCCTAACCC 60.394 60.000 0.00 0.00 0.00 4.11
974 1162 1.153168 CCTGCACCATCCTAACCCG 60.153 63.158 0.00 0.00 0.00 5.28
975 1163 1.153168 CTGCACCATCCTAACCCGG 60.153 63.158 0.00 0.00 0.00 5.73
1054 1242 0.610232 CAAGAAGGGCCCTTGGACAG 60.610 60.000 41.94 21.23 37.83 3.51
1062 1250 0.250901 GCCCTTGGACAGCTGAAGAA 60.251 55.000 23.35 8.22 0.00 2.52
1074 1262 2.371510 AGCTGAAGAAGACCAGAAGCTT 59.628 45.455 0.00 0.00 36.13 3.74
1159 1349 1.027792 ACACACGCCACGGTTTTCTT 61.028 50.000 0.00 0.00 0.00 2.52
1161 1351 0.812549 ACACGCCACGGTTTTCTTTT 59.187 45.000 0.00 0.00 0.00 2.27
1163 1353 1.586123 CACGCCACGGTTTTCTTTTTG 59.414 47.619 0.00 0.00 0.00 2.44
1164 1354 0.574922 CGCCACGGTTTTCTTTTTGC 59.425 50.000 0.00 0.00 0.00 3.68
1165 1355 1.646189 GCCACGGTTTTCTTTTTGCA 58.354 45.000 0.00 0.00 0.00 4.08
1166 1356 1.326245 GCCACGGTTTTCTTTTTGCAC 59.674 47.619 0.00 0.00 0.00 4.57
1171 1367 1.134640 GGTTTTCTTTTTGCACCGGGT 60.135 47.619 6.32 0.00 0.00 5.28
1173 1369 3.243941 GGTTTTCTTTTTGCACCGGGTAT 60.244 43.478 6.32 0.00 0.00 2.73
1230 1429 1.664965 GCGTCTGGTTCTTCTGCGT 60.665 57.895 0.00 0.00 0.00 5.24
1280 1484 0.536260 GCTGCAGACTGAGATGGACT 59.464 55.000 20.43 0.00 0.00 3.85
1388 1592 2.667473 AGTACGGCACACCTATCAAC 57.333 50.000 0.00 0.00 0.00 3.18
1389 1593 1.897133 AGTACGGCACACCTATCAACA 59.103 47.619 0.00 0.00 0.00 3.33
1390 1594 2.300723 AGTACGGCACACCTATCAACAA 59.699 45.455 0.00 0.00 0.00 2.83
1391 1595 2.264005 ACGGCACACCTATCAACAAA 57.736 45.000 0.00 0.00 0.00 2.83
1393 1597 1.876799 CGGCACACCTATCAACAAACA 59.123 47.619 0.00 0.00 0.00 2.83
1395 1599 3.426159 CGGCACACCTATCAACAAACATC 60.426 47.826 0.00 0.00 0.00 3.06
1396 1600 3.758554 GGCACACCTATCAACAAACATCT 59.241 43.478 0.00 0.00 0.00 2.90
1398 1602 5.156355 GCACACCTATCAACAAACATCTTG 58.844 41.667 0.00 0.00 0.00 3.02
1399 1603 5.156355 CACACCTATCAACAAACATCTTGC 58.844 41.667 0.00 0.00 0.00 4.01
1405 1639 7.023575 CCTATCAACAAACATCTTGCTTGTAC 58.976 38.462 0.00 0.00 35.83 2.90
1422 1656 9.979578 TTGCTTGTACAATCTTCAAAAACATAT 57.020 25.926 9.13 0.00 0.00 1.78
1450 1698 1.532868 GTGGTGCTCTTGCTAACACAG 59.467 52.381 0.00 0.00 40.48 3.66
1452 1700 2.158827 TGGTGCTCTTGCTAACACAGAA 60.159 45.455 0.00 0.00 40.48 3.02
1454 1702 3.304057 GGTGCTCTTGCTAACACAGAAAC 60.304 47.826 0.00 0.00 40.48 2.78
1455 1703 3.561725 GTGCTCTTGCTAACACAGAAACT 59.438 43.478 0.00 0.00 40.48 2.66
1456 1704 3.561310 TGCTCTTGCTAACACAGAAACTG 59.439 43.478 0.00 0.00 40.48 3.16
1457 1705 3.608008 GCTCTTGCTAACACAGAAACTGC 60.608 47.826 0.00 0.00 33.68 4.40
1458 1706 3.540617 TCTTGCTAACACAGAAACTGCA 58.459 40.909 0.00 0.00 34.37 4.41
1701 1951 4.112341 CAAAGCGCCAGCCAGCTC 62.112 66.667 2.29 0.00 46.67 4.09
1847 2097 2.492090 CCTCCTGAGTCCTTCGCG 59.508 66.667 0.00 0.00 0.00 5.87
1893 2143 2.234586 TCCAAGGATCATGGAGGGC 58.765 57.895 13.82 0.00 41.98 5.19
2001 2251 4.062293 TCAATTGTACCAACCAGAACTCG 58.938 43.478 5.13 0.00 0.00 4.18
2084 2346 0.391263 CCACTTGCCGACTTCCCTAC 60.391 60.000 0.00 0.00 0.00 3.18
2092 2354 1.900486 CCGACTTCCCTACTTCCAACT 59.100 52.381 0.00 0.00 0.00 3.16
2202 2464 1.150827 TGAGCGAGTTTGCATGAGTG 58.849 50.000 0.00 0.00 37.31 3.51
2296 2721 4.685169 AAATCTGTGCAAAGTGATACGG 57.315 40.909 3.21 0.00 0.00 4.02
2313 2738 3.508840 GCGGGTTGCCGGATCTTG 61.509 66.667 5.05 0.00 37.76 3.02
2329 2754 6.710295 CCGGATCTTGAATAATTGGTGTGATA 59.290 38.462 0.00 0.00 0.00 2.15
2364 2789 6.611381 CAAACAAAGACCGATCAACACATAT 58.389 36.000 0.00 0.00 0.00 1.78
2367 2792 6.403049 ACAAAGACCGATCAACACATATGTA 58.597 36.000 8.32 0.00 38.45 2.29
2369 2794 5.854010 AGACCGATCAACACATATGTAGT 57.146 39.130 8.32 6.58 38.45 2.73
2432 2858 4.398044 ACACTTTTGATGGACTTGAAACGT 59.602 37.500 0.00 0.00 0.00 3.99
2434 2860 3.347958 TTTGATGGACTTGAAACGTGC 57.652 42.857 0.00 0.00 0.00 5.34
2446 2872 1.133407 GAAACGTGCCACTTGGTTCAA 59.867 47.619 0.00 0.00 37.57 2.69
2454 2880 1.063469 CCACTTGGTTCAACACGTGTC 59.937 52.381 23.61 9.25 38.51 3.67
2476 2902 3.349006 GCTCTGCACACCACGTGG 61.349 66.667 32.83 32.83 46.45 4.94
2477 2903 2.421314 CTCTGCACACCACGTGGA 59.579 61.111 40.21 17.21 46.45 4.02
2486 2912 3.331150 CACACCACGTGGAAGCTTTATA 58.669 45.455 40.21 0.00 42.34 0.98
2488 2914 5.113383 CACACCACGTGGAAGCTTTATATA 58.887 41.667 40.21 0.00 42.34 0.86
2513 2939 0.965439 TCCTTCACGCATTTTTGGGG 59.035 50.000 0.00 0.00 0.00 4.96
2514 2940 0.678950 CCTTCACGCATTTTTGGGGT 59.321 50.000 0.00 0.00 0.00 4.95
2515 2941 1.336795 CCTTCACGCATTTTTGGGGTC 60.337 52.381 0.00 0.00 0.00 4.46
2518 2944 1.611491 TCACGCATTTTTGGGGTCTTC 59.389 47.619 0.00 0.00 0.00 2.87
2519 2945 1.339610 CACGCATTTTTGGGGTCTTCA 59.660 47.619 0.00 0.00 0.00 3.02
2523 2949 2.608623 CATTTTTGGGGTCTTCAGGGT 58.391 47.619 0.00 0.00 0.00 4.34
2524 2950 2.858787 TTTTTGGGGTCTTCAGGGTT 57.141 45.000 0.00 0.00 0.00 4.11
2525 2951 2.858787 TTTTGGGGTCTTCAGGGTTT 57.141 45.000 0.00 0.00 0.00 3.27
2526 2952 2.858787 TTTGGGGTCTTCAGGGTTTT 57.141 45.000 0.00 0.00 0.00 2.43
2527 2953 2.858787 TTGGGGTCTTCAGGGTTTTT 57.141 45.000 0.00 0.00 0.00 1.94
2528 2954 2.080654 TGGGGTCTTCAGGGTTTTTG 57.919 50.000 0.00 0.00 0.00 2.44
2529 2955 1.338107 GGGGTCTTCAGGGTTTTTGG 58.662 55.000 0.00 0.00 0.00 3.28
2530 2956 1.133294 GGGGTCTTCAGGGTTTTTGGA 60.133 52.381 0.00 0.00 0.00 3.53
2531 2957 2.492753 GGGGTCTTCAGGGTTTTTGGAT 60.493 50.000 0.00 0.00 0.00 3.41
2532 2958 3.239449 GGGTCTTCAGGGTTTTTGGATT 58.761 45.455 0.00 0.00 0.00 3.01
2533 2959 4.412843 GGGTCTTCAGGGTTTTTGGATTA 58.587 43.478 0.00 0.00 0.00 1.75
2591 3017 2.159585 CGTGTGAAGCACAGTTGTTGAA 60.160 45.455 0.00 0.00 45.43 2.69
2594 3020 4.089923 GTGTGAAGCACAGTTGTTGAAAAC 59.910 41.667 0.00 0.00 45.43 2.43
2619 3045 3.806625 AGACACAACTTTGCATGCTTT 57.193 38.095 20.33 3.96 0.00 3.51
2621 3047 3.130869 AGACACAACTTTGCATGCTTTCA 59.869 39.130 20.33 0.00 0.00 2.69
2624 3050 3.000523 CACAACTTTGCATGCTTTCACAC 59.999 43.478 20.33 0.00 0.00 3.82
2668 3094 3.266964 CACATGTGTGCTTCCCGG 58.733 61.111 18.03 0.00 39.39 5.73
2704 3130 5.001232 ACAAGTGTGTATATGTGTGGTTCC 58.999 41.667 0.00 0.00 35.72 3.62
2725 3151 2.939103 CCGGAAGAGTGAAAAGCATAGG 59.061 50.000 0.00 0.00 0.00 2.57
2728 3154 4.327680 GGAAGAGTGAAAAGCATAGGTGT 58.672 43.478 0.00 0.00 0.00 4.16
2738 3164 1.281899 GCATAGGTGTGCTTCTCGAC 58.718 55.000 0.00 0.00 41.82 4.20
2739 3165 1.134965 GCATAGGTGTGCTTCTCGACT 60.135 52.381 0.00 0.00 41.82 4.18
2746 3172 2.737252 GTGTGCTTCTCGACTAAAAGGG 59.263 50.000 0.00 0.00 0.00 3.95
2747 3173 2.631062 TGTGCTTCTCGACTAAAAGGGA 59.369 45.455 0.00 0.00 0.00 4.20
2767 3193 5.070847 AGGGAAAAATCACAATTGTGCTTCT 59.929 36.000 29.84 18.23 45.25 2.85
2768 3194 5.406477 GGGAAAAATCACAATTGTGCTTCTC 59.594 40.000 29.84 23.53 45.25 2.87
2776 3202 1.813513 ATTGTGCTTCTCAGTTCCCG 58.186 50.000 0.00 0.00 0.00 5.14
2860 3294 8.966155 TTTTTCTTCATTTACCCCCTCTTTAT 57.034 30.769 0.00 0.00 0.00 1.40
2869 3303 4.759793 ACCCCCTCTTTATGGTTCTTTT 57.240 40.909 0.00 0.00 0.00 2.27
2870 3304 5.871324 ACCCCCTCTTTATGGTTCTTTTA 57.129 39.130 0.00 0.00 0.00 1.52
2871 3305 5.827756 ACCCCCTCTTTATGGTTCTTTTAG 58.172 41.667 0.00 0.00 0.00 1.85
2872 3306 5.201243 CCCCCTCTTTATGGTTCTTTTAGG 58.799 45.833 0.00 0.00 0.00 2.69
2873 3307 5.201243 CCCCTCTTTATGGTTCTTTTAGGG 58.799 45.833 0.00 0.00 40.75 3.53
2874 3308 5.201243 CCCTCTTTATGGTTCTTTTAGGGG 58.799 45.833 0.00 0.00 37.98 4.79
2875 3309 5.201243 CCTCTTTATGGTTCTTTTAGGGGG 58.799 45.833 0.00 0.00 0.00 5.40
2892 4012 1.478105 GGGGGAAAGTTCGTCCAAACT 60.478 52.381 0.00 0.00 41.20 2.66
2900 4020 6.072893 GGAAAGTTCGTCCAAACTTATTAGCA 60.073 38.462 2.73 0.00 46.17 3.49
2904 4024 4.196193 TCGTCCAAACTTATTAGCATGGG 58.804 43.478 0.00 0.00 33.43 4.00
2912 4032 8.734386 CCAAACTTATTAGCATGGGATCTAATC 58.266 37.037 6.59 0.00 36.95 1.75
3013 4133 7.889873 TTTGTAGAAAATCAAAACTCCCTGA 57.110 32.000 0.00 0.00 31.86 3.86
3027 4147 3.117888 ACTCCCTGATTGTGACAAGTGTT 60.118 43.478 3.74 0.00 0.00 3.32
3068 4194 4.325028 CATCAGAGAAGATGGGAGTGAG 57.675 50.000 0.00 0.00 41.29 3.51
3074 4200 4.780021 AGAGAAGATGGGAGTGAGCTTTAA 59.220 41.667 0.00 0.00 0.00 1.52
3104 4230 1.613836 CCTTAGGGCATCTCCAATGC 58.386 55.000 1.40 1.40 43.85 3.56
3106 4232 0.836606 TTAGGGCATCTCCAATGCGA 59.163 50.000 4.11 0.00 45.41 5.10
3117 4243 2.493278 CTCCAATGCGAACCCTCAAAAT 59.507 45.455 0.00 0.00 0.00 1.82
3142 4268 1.948611 GCAAACATCCGGACCAAGCTA 60.949 52.381 6.12 0.00 0.00 3.32
3163 4289 0.249120 CCGGACACTACAAGCCATCA 59.751 55.000 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.030371 GAGACCGTCCCCTAACTAAGG 58.970 57.143 0.00 0.00 46.09 2.69
19 20 2.688958 CTGAGACCGTCCCCTAACTAAG 59.311 54.545 0.00 0.00 0.00 2.18
20 21 2.042162 ACTGAGACCGTCCCCTAACTAA 59.958 50.000 0.00 0.00 0.00 2.24
21 22 1.637553 ACTGAGACCGTCCCCTAACTA 59.362 52.381 0.00 0.00 0.00 2.24
22 23 0.408700 ACTGAGACCGTCCCCTAACT 59.591 55.000 0.00 0.00 0.00 2.24
23 24 0.816373 GACTGAGACCGTCCCCTAAC 59.184 60.000 0.00 0.00 0.00 2.34
24 25 0.324091 GGACTGAGACCGTCCCCTAA 60.324 60.000 0.00 0.00 44.08 2.69
25 26 1.305623 GGACTGAGACCGTCCCCTA 59.694 63.158 0.00 0.00 44.08 3.53
26 27 2.037527 GGACTGAGACCGTCCCCT 59.962 66.667 0.00 0.00 44.08 4.79
69 70 1.044790 AAGTATGCAATGGGCCCAGC 61.045 55.000 31.97 28.40 43.89 4.85
70 71 0.748450 CAAGTATGCAATGGGCCCAG 59.252 55.000 31.97 19.13 43.89 4.45
74 75 4.454728 TTTTCTCAAGTATGCAATGGGC 57.545 40.909 0.00 0.00 45.13 5.36
81 82 6.130058 GCGTATAGCTTTTTCTCAAGTATGC 58.870 40.000 0.00 0.00 44.04 3.14
112 113 9.875708 GACTAGATTCCTGGGATATCATAGTAT 57.124 37.037 4.83 0.00 0.00 2.12
188 192 7.768582 CACATGACACCTATTTTATACACCAGA 59.231 37.037 0.00 0.00 0.00 3.86
189 193 7.768582 TCACATGACACCTATTTTATACACCAG 59.231 37.037 0.00 0.00 0.00 4.00
190 194 7.551262 GTCACATGACACCTATTTTATACACCA 59.449 37.037 7.15 0.00 44.18 4.17
191 195 7.916552 GTCACATGACACCTATTTTATACACC 58.083 38.462 7.15 0.00 44.18 4.16
215 220 4.239304 TGTATTCGCGACATTGTACTTGT 58.761 39.130 9.15 2.23 0.00 3.16
243 248 3.519510 AGTAGCAGCCTCCAAAATCTGTA 59.480 43.478 0.00 0.00 0.00 2.74
250 255 2.637872 AGTTGTAGTAGCAGCCTCCAAA 59.362 45.455 0.00 0.00 0.00 3.28
254 259 3.949113 ACTCTAGTTGTAGTAGCAGCCTC 59.051 47.826 0.00 0.00 0.00 4.70
255 260 3.970842 ACTCTAGTTGTAGTAGCAGCCT 58.029 45.455 0.00 0.00 0.00 4.58
257 262 5.220892 CCTGTACTCTAGTTGTAGTAGCAGC 60.221 48.000 0.00 0.00 32.27 5.25
259 264 5.879223 GTCCTGTACTCTAGTTGTAGTAGCA 59.121 44.000 0.00 0.00 0.00 3.49
260 265 6.114767 AGTCCTGTACTCTAGTTGTAGTAGC 58.885 44.000 0.00 0.00 30.33 3.58
275 280 7.972277 TCAACAACTATTATTCGAGTCCTGTAC 59.028 37.037 0.00 0.00 0.00 2.90
277 282 6.931838 TCAACAACTATTATTCGAGTCCTGT 58.068 36.000 0.00 0.00 0.00 4.00
280 285 9.490663 CAATTTCAACAACTATTATTCGAGTCC 57.509 33.333 0.00 0.00 0.00 3.85
290 295 6.160576 AGTGGTGCAATTTCAACAACTATT 57.839 33.333 0.00 0.00 35.15 1.73
291 296 5.789643 AGTGGTGCAATTTCAACAACTAT 57.210 34.783 0.00 0.00 35.15 2.12
292 297 5.105554 ACAAGTGGTGCAATTTCAACAACTA 60.106 36.000 0.00 0.00 35.15 2.24
315 320 9.337396 TGTATGGTATCAATTCCAAAGACATAC 57.663 33.333 0.00 0.00 38.12 2.39
336 465 4.021102 AGTTGGTTCCTGGAAGTGTATG 57.979 45.455 9.92 0.00 0.00 2.39
337 466 4.351111 AGAAGTTGGTTCCTGGAAGTGTAT 59.649 41.667 9.92 0.00 35.51 2.29
354 483 5.796424 AATGAGCAAATGTTCCAGAAGTT 57.204 34.783 0.00 0.00 0.00 2.66
362 491 9.970395 TGATCCATATAAAATGAGCAAATGTTC 57.030 29.630 0.00 0.00 0.00 3.18
366 496 9.976511 CTGTTGATCCATATAAAATGAGCAAAT 57.023 29.630 0.00 0.00 0.00 2.32
424 554 9.976776 TGTTGTTTTATGAAACCCTACCATATA 57.023 29.630 10.29 0.00 43.57 0.86
425 555 8.887264 TGTTGTTTTATGAAACCCTACCATAT 57.113 30.769 10.29 0.00 43.57 1.78
426 556 8.887264 ATGTTGTTTTATGAAACCCTACCATA 57.113 30.769 10.29 0.00 43.57 2.74
427 557 7.790782 ATGTTGTTTTATGAAACCCTACCAT 57.209 32.000 10.29 3.42 43.57 3.55
428 558 8.744652 CATATGTTGTTTTATGAAACCCTACCA 58.255 33.333 10.29 1.47 43.57 3.25
429 559 8.194769 CCATATGTTGTTTTATGAAACCCTACC 58.805 37.037 10.29 0.00 43.57 3.18
430 560 8.745590 ACCATATGTTGTTTTATGAAACCCTAC 58.254 33.333 10.29 6.83 43.57 3.18
431 561 8.887264 ACCATATGTTGTTTTATGAAACCCTA 57.113 30.769 10.29 0.00 43.57 3.53
432 562 7.790782 ACCATATGTTGTTTTATGAAACCCT 57.209 32.000 10.29 0.00 43.57 4.34
433 563 8.194769 CCTACCATATGTTGTTTTATGAAACCC 58.805 37.037 10.29 2.52 43.57 4.11
434 564 8.962679 TCCTACCATATGTTGTTTTATGAAACC 58.037 33.333 10.29 0.00 43.57 3.27
436 566 9.967451 TCTCCTACCATATGTTGTTTTATGAAA 57.033 29.630 1.24 0.00 0.00 2.69
438 568 9.559732 CATCTCCTACCATATGTTGTTTTATGA 57.440 33.333 1.24 0.00 0.00 2.15
439 569 9.342308 ACATCTCCTACCATATGTTGTTTTATG 57.658 33.333 1.24 1.38 0.00 1.90
440 570 9.920946 AACATCTCCTACCATATGTTGTTTTAT 57.079 29.630 1.24 0.00 40.18 1.40
442 572 9.174166 GTAACATCTCCTACCATATGTTGTTTT 57.826 33.333 9.22 0.00 41.38 2.43
443 573 8.325787 TGTAACATCTCCTACCATATGTTGTTT 58.674 33.333 9.22 0.00 41.38 2.83
444 574 7.857456 TGTAACATCTCCTACCATATGTTGTT 58.143 34.615 9.22 0.00 41.38 2.83
445 575 7.432148 TGTAACATCTCCTACCATATGTTGT 57.568 36.000 9.22 0.00 41.38 3.32
446 576 8.150296 TCATGTAACATCTCCTACCATATGTTG 58.850 37.037 9.22 0.00 41.38 3.33
449 580 8.534496 TCATCATGTAACATCTCCTACCATATG 58.466 37.037 0.00 0.00 0.00 1.78
491 630 8.752766 AAAGCAGTCAGATCATTGTTTATTTG 57.247 30.769 0.00 0.00 0.00 2.32
496 635 6.645790 AAGAAAGCAGTCAGATCATTGTTT 57.354 33.333 0.00 0.00 0.00 2.83
510 649 8.519526 TGGGTGTTATAACATTTAAGAAAGCAG 58.480 33.333 20.72 0.00 41.59 4.24
556 709 7.962964 TGTGATATTTTCGTTGTTCTTCTCT 57.037 32.000 0.00 0.00 0.00 3.10
557 710 9.612620 AATTGTGATATTTTCGTTGTTCTTCTC 57.387 29.630 0.00 0.00 0.00 2.87
562 715 9.937577 GCTTTAATTGTGATATTTTCGTTGTTC 57.062 29.630 0.00 0.00 0.00 3.18
564 717 9.469807 TTGCTTTAATTGTGATATTTTCGTTGT 57.530 25.926 0.00 0.00 0.00 3.32
621 774 3.007635 CTCTATTTTCCTTCGGCCGTTT 58.992 45.455 27.15 4.71 0.00 3.60
622 775 2.027469 ACTCTATTTTCCTTCGGCCGTT 60.027 45.455 27.15 3.64 0.00 4.44
623 776 1.553704 ACTCTATTTTCCTTCGGCCGT 59.446 47.619 27.15 5.29 0.00 5.68
624 777 2.311124 ACTCTATTTTCCTTCGGCCG 57.689 50.000 22.12 22.12 0.00 6.13
638 791 6.990939 AGCAGTCACGTTGATATAGTACTCTA 59.009 38.462 0.00 0.00 0.00 2.43
645 798 5.332883 GCAATCAGCAGTCACGTTGATATAG 60.333 44.000 0.00 0.00 44.79 1.31
666 819 1.048601 CCGCTAGGATAAGAGGGCAA 58.951 55.000 0.00 0.00 41.02 4.52
670 823 3.574826 ACTTAAGCCGCTAGGATAAGAGG 59.425 47.826 13.96 0.00 39.13 3.69
671 824 4.278669 TGACTTAAGCCGCTAGGATAAGAG 59.721 45.833 13.96 0.00 39.13 2.85
672 825 4.212716 TGACTTAAGCCGCTAGGATAAGA 58.787 43.478 13.96 0.00 39.13 2.10
673 826 4.585955 TGACTTAAGCCGCTAGGATAAG 57.414 45.455 1.29 7.68 40.90 1.73
675 828 3.702548 TGTTGACTTAAGCCGCTAGGATA 59.297 43.478 1.29 0.00 41.02 2.59
676 829 2.500098 TGTTGACTTAAGCCGCTAGGAT 59.500 45.455 1.29 0.00 41.02 3.24
677 830 1.897133 TGTTGACTTAAGCCGCTAGGA 59.103 47.619 1.29 0.00 41.02 2.94
733 898 1.152756 GTCAAGTGGGCAAGGGTGT 60.153 57.895 0.00 0.00 0.00 4.16
734 899 0.540365 ATGTCAAGTGGGCAAGGGTG 60.540 55.000 0.00 0.00 0.00 4.61
745 915 2.363788 ATGCGACGTACATGTCAAGT 57.636 45.000 0.00 0.30 38.84 3.16
790 976 9.543783 GGATTAGTTTATTCGAGTGGAAAGTAT 57.456 33.333 0.00 0.00 38.36 2.12
792 978 7.549488 CAGGATTAGTTTATTCGAGTGGAAAGT 59.451 37.037 0.00 0.00 38.36 2.66
970 1158 1.073706 AGATAGGATTGGGCCGGGT 60.074 57.895 2.18 0.00 0.00 5.28
972 1160 0.764890 TTGAGATAGGATTGGGCCGG 59.235 55.000 0.00 0.00 0.00 6.13
973 1161 2.616510 GGATTGAGATAGGATTGGGCCG 60.617 54.545 0.00 0.00 0.00 6.13
974 1162 2.646798 AGGATTGAGATAGGATTGGGCC 59.353 50.000 0.00 0.00 0.00 5.80
975 1163 5.190528 TGATAGGATTGAGATAGGATTGGGC 59.809 44.000 0.00 0.00 0.00 5.36
1044 1232 1.349026 TCTTCTTCAGCTGTCCAAGGG 59.651 52.381 14.67 7.26 0.00 3.95
1054 1242 2.470983 AGCTTCTGGTCTTCTTCAGC 57.529 50.000 0.00 0.00 0.00 4.26
1062 1250 1.926108 AGTCCGTAAGCTTCTGGTCT 58.074 50.000 0.00 6.53 0.00 3.85
1074 1262 2.635714 TGCTTCTCGATGTAGTCCGTA 58.364 47.619 0.00 0.00 0.00 4.02
1149 1338 1.915952 CGGTGCAAAAAGAAAACCGT 58.084 45.000 4.44 0.00 46.66 4.83
1151 1340 1.134640 ACCCGGTGCAAAAAGAAAACC 60.135 47.619 0.00 0.00 0.00 3.27
1159 1349 1.468985 CATCCATACCCGGTGCAAAA 58.531 50.000 0.00 0.00 0.00 2.44
1161 1351 1.453015 GCATCCATACCCGGTGCAA 60.453 57.895 0.00 0.00 34.89 4.08
1163 1353 2.594592 GGCATCCATACCCGGTGC 60.595 66.667 0.00 0.69 34.37 5.01
1164 1354 2.280797 CGGCATCCATACCCGGTG 60.281 66.667 0.00 0.00 38.42 4.94
1165 1355 4.250305 GCGGCATCCATACCCGGT 62.250 66.667 0.00 0.00 42.17 5.28
1230 1429 3.511540 CACCTGTTGAGTCCTGTGAGATA 59.488 47.826 0.00 0.00 0.00 1.98
1280 1484 5.074746 TGATATCAGGCCTCAGGTAGTTA 57.925 43.478 0.00 0.00 0.00 2.24
1388 1592 7.140705 TGAAGATTGTACAAGCAAGATGTTTG 58.859 34.615 24.55 5.54 43.02 2.93
1389 1593 7.275888 TGAAGATTGTACAAGCAAGATGTTT 57.724 32.000 24.55 9.04 32.27 2.83
1390 1594 6.882610 TGAAGATTGTACAAGCAAGATGTT 57.117 33.333 24.55 9.74 32.27 2.71
1391 1595 6.882610 TTGAAGATTGTACAAGCAAGATGT 57.117 33.333 24.55 0.89 34.81 3.06
1393 1597 8.196771 TGTTTTTGAAGATTGTACAAGCAAGAT 58.803 29.630 24.55 8.64 0.00 2.40
1395 1599 7.754069 TGTTTTTGAAGATTGTACAAGCAAG 57.246 32.000 24.55 0.00 0.00 4.01
1396 1600 9.979578 ATATGTTTTTGAAGATTGTACAAGCAA 57.020 25.926 24.55 16.37 0.00 3.91
1422 1656 6.097696 TGTTAGCAAGAGCACCACATATAGTA 59.902 38.462 0.00 0.00 45.49 1.82
1423 1657 5.104941 TGTTAGCAAGAGCACCACATATAGT 60.105 40.000 0.00 0.00 45.49 2.12
1424 1658 5.235186 GTGTTAGCAAGAGCACCACATATAG 59.765 44.000 0.00 0.00 45.49 1.31
1457 1705 1.542472 TGGTTTGATCAGCACAGCATG 59.458 47.619 8.84 0.00 46.00 4.06
1458 1706 1.816835 CTGGTTTGATCAGCACAGCAT 59.183 47.619 8.84 0.00 34.53 3.79
1671 1921 3.047877 CTTTGGTCGTCCCACGGC 61.048 66.667 0.00 0.00 46.91 5.68
1701 1951 2.046023 TGGACTGCATCGGCTTGG 60.046 61.111 0.00 0.00 41.91 3.61
1776 2026 2.268280 CTGCTGGAGCTGGGACTG 59.732 66.667 0.00 0.00 42.66 3.51
1893 2143 0.452987 CCAAGTCATGGCCATTGACG 59.547 55.000 27.77 19.94 43.80 4.35
1905 2155 1.493022 ACTTGCCCAGTTACCAAGTCA 59.507 47.619 0.00 0.00 44.05 3.41
1931 2181 4.082845 TGAGCTACTAGGTATCTGGATGC 58.917 47.826 0.00 0.00 0.00 3.91
2001 2251 2.287009 GCCGCTGTTTGCACTATAATCC 60.287 50.000 0.00 0.00 43.06 3.01
2084 2346 1.021390 AGCATCGCCGAAGTTGGAAG 61.021 55.000 0.00 0.00 0.00 3.46
2202 2464 5.880332 TCTTTGGGTTATCTTGTGCAGTATC 59.120 40.000 0.00 0.00 0.00 2.24
2277 2702 2.009774 GCCGTATCACTTTGCACAGAT 58.990 47.619 6.92 0.89 0.00 2.90
2329 2754 6.228258 TCGGTCTTTGTTTGCTAGACTAATT 58.772 36.000 0.00 0.00 38.62 1.40
2364 2789 8.785859 AGGTACCCTCTAATTAGTTAGACTACA 58.214 37.037 8.74 0.00 40.98 2.74
2369 2794 9.995594 TGTAAAGGTACCCTCTAATTAGTTAGA 57.004 33.333 8.74 7.41 43.02 2.10
2390 2815 3.553597 CCGCTGCGGTTTTTGTAAA 57.446 47.368 31.72 0.00 42.73 2.01
2432 2858 0.678366 ACGTGTTGAACCAAGTGGCA 60.678 50.000 0.00 0.00 39.32 4.92
2434 2860 1.063469 GACACGTGTTGAACCAAGTGG 59.937 52.381 24.26 0.00 45.35 4.00
2466 2892 2.561478 ATAAAGCTTCCACGTGGTGT 57.439 45.000 32.74 12.55 36.34 4.16
2467 2893 6.861065 AATATATAAAGCTTCCACGTGGTG 57.139 37.500 32.74 25.72 36.34 4.17
2468 2894 7.875327 AAAATATATAAAGCTTCCACGTGGT 57.125 32.000 32.74 16.03 36.34 4.16
2513 2939 6.590234 ACATAATCCAAAAACCCTGAAGAC 57.410 37.500 0.00 0.00 0.00 3.01
2514 2940 7.070571 ACAAACATAATCCAAAAACCCTGAAGA 59.929 33.333 0.00 0.00 0.00 2.87
2515 2941 7.216494 ACAAACATAATCCAAAAACCCTGAAG 58.784 34.615 0.00 0.00 0.00 3.02
2518 2944 7.800155 AAACAAACATAATCCAAAAACCCTG 57.200 32.000 0.00 0.00 0.00 4.45
2519 2945 8.815565 AAAAACAAACATAATCCAAAAACCCT 57.184 26.923 0.00 0.00 0.00 4.34
2548 2974 7.444183 ACACGAGGATAATCTTCAAGAAAACAA 59.556 33.333 0.00 0.00 0.00 2.83
2591 3017 5.132897 TGCAAAGTTGTGTCTTTCTGTTT 57.867 34.783 0.00 0.00 35.77 2.83
2594 3020 3.488310 GCATGCAAAGTTGTGTCTTTCTG 59.512 43.478 14.21 0.00 35.77 3.02
2606 3032 3.523606 TTGTGTGAAAGCATGCAAAGT 57.476 38.095 21.98 0.73 0.00 2.66
2619 3045 4.941263 AGAAGTACAACTTGCTTTGTGTGA 59.059 37.500 8.60 0.00 38.80 3.58
2621 3047 5.183140 ACAAGAAGTACAACTTGCTTTGTGT 59.817 36.000 22.74 7.80 44.75 3.72
2624 3050 7.246674 TCTACAAGAAGTACAACTTGCTTTG 57.753 36.000 22.74 14.35 44.75 2.77
2659 3085 0.753479 TTTGCACTTTCCGGGAAGCA 60.753 50.000 23.14 14.00 0.00 3.91
2704 3130 2.939103 CCTATGCTTTTCACTCTTCCGG 59.061 50.000 0.00 0.00 0.00 5.14
2725 3151 2.737252 CCCTTTTAGTCGAGAAGCACAC 59.263 50.000 0.00 0.00 0.00 3.82
2728 3154 4.345859 TTTCCCTTTTAGTCGAGAAGCA 57.654 40.909 0.00 0.00 0.00 3.91
2840 3274 5.766590 ACCATAAAGAGGGGGTAAATGAAG 58.233 41.667 0.00 0.00 0.00 3.02
2842 3276 5.494706 AGAACCATAAAGAGGGGGTAAATGA 59.505 40.000 0.00 0.00 32.21 2.57
2843 3277 5.766590 AGAACCATAAAGAGGGGGTAAATG 58.233 41.667 0.00 0.00 32.21 2.32
2844 3278 6.417503 AAGAACCATAAAGAGGGGGTAAAT 57.582 37.500 0.00 0.00 32.21 1.40
2848 3282 4.759793 AAAAGAACCATAAAGAGGGGGT 57.240 40.909 0.00 0.00 34.43 4.95
2852 3286 5.201243 CCCCCTAAAAGAACCATAAAGAGG 58.799 45.833 0.00 0.00 0.00 3.69
2872 3306 0.956633 GTTTGGACGAACTTTCCCCC 59.043 55.000 0.00 0.00 31.33 5.40
2873 3307 1.977056 AGTTTGGACGAACTTTCCCC 58.023 50.000 0.00 0.00 36.49 4.81
2874 3308 5.700722 AATAAGTTTGGACGAACTTTCCC 57.299 39.130 19.56 0.00 45.05 3.97
2875 3309 6.072893 TGCTAATAAGTTTGGACGAACTTTCC 60.073 38.462 19.56 0.00 45.05 3.13
2876 3310 6.894828 TGCTAATAAGTTTGGACGAACTTTC 58.105 36.000 19.56 7.92 45.05 2.62
2879 3313 5.354234 CCATGCTAATAAGTTTGGACGAACT 59.646 40.000 0.00 0.00 41.44 3.01
2880 3314 5.448632 CCCATGCTAATAAGTTTGGACGAAC 60.449 44.000 0.00 0.00 31.91 3.95
2884 4004 6.064717 AGATCCCATGCTAATAAGTTTGGAC 58.935 40.000 0.00 0.00 31.91 4.02
2950 4070 9.725019 TTGAACTGTATGTCTAAATCATGAAGT 57.275 29.630 0.00 0.00 0.00 3.01
2970 4090 9.321562 TCTACAAAACGTTTTATCTCTTGAACT 57.678 29.630 24.79 0.00 0.00 3.01
3000 4120 4.163441 TGTCACAATCAGGGAGTTTTGA 57.837 40.909 0.00 0.00 0.00 2.69
3013 4133 2.480073 GCAGTGCAACACTTGTCACAAT 60.480 45.455 11.09 0.00 42.59 2.71
3104 4230 0.179189 GCGAGCATTTTGAGGGTTCG 60.179 55.000 0.00 0.00 0.00 3.95
3106 4232 1.327303 TTGCGAGCATTTTGAGGGTT 58.673 45.000 0.00 0.00 0.00 4.11
3117 4243 2.032634 GTCCGGATGTTTGCGAGCA 61.033 57.895 7.81 0.00 39.29 4.26
3142 4268 1.139058 GATGGCTTGTAGTGTCCGGAT 59.861 52.381 7.81 0.00 0.00 4.18
3175 4301 2.952783 CGTATCCGCGGACCGTTG 60.953 66.667 33.75 15.10 34.38 4.10
3178 4304 4.619140 GGACGTATCCGCGGACCG 62.619 72.222 34.46 34.46 34.48 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.