Multiple sequence alignment - TraesCS6A01G318500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G318500 chr6A 100.000 4295 0 0 1 4295 554515175 554519469 0.000000e+00 7932
1 TraesCS6A01G318500 chr6A 91.579 190 15 1 3916 4105 554691997 554692185 1.180000e-65 261
2 TraesCS6A01G318500 chr6B 94.567 3092 121 24 518 3589 613298350 613301414 0.000000e+00 4735
3 TraesCS6A01G318500 chr6B 94.538 238 8 4 1 233 613298114 613298351 3.160000e-96 363
4 TraesCS6A01G318500 chr6B 91.579 190 15 1 3916 4105 613573572 613573760 1.180000e-65 261
5 TraesCS6A01G318500 chr6B 92.414 145 8 1 3906 4050 613310335 613310476 2.020000e-48 204
6 TraesCS6A01G318500 chr6D 95.896 1657 54 8 1987 3637 408688790 408690438 0.000000e+00 2671
7 TraesCS6A01G318500 chr6D 92.703 1713 81 25 297 1983 408687010 408688704 0.000000e+00 2431
8 TraesCS6A01G318500 chr6D 94.444 234 11 2 1 232 408672234 408672467 4.080000e-95 359
9 TraesCS6A01G318500 chr6D 91.053 190 16 1 3916 4105 408893730 408893918 5.510000e-64 255
10 TraesCS6A01G318500 chr6D 90.798 163 10 1 3947 4109 408690806 408690963 3.360000e-51 213
11 TraesCS6A01G318500 chr4D 87.633 283 27 5 231 509 63413342 63413064 5.360000e-84 322
12 TraesCS6A01G318500 chr4D 87.410 278 27 5 233 507 21609922 21609650 3.220000e-81 313
13 TraesCS6A01G318500 chr4D 86.760 287 29 6 228 509 311612948 311612666 1.160000e-80 311
14 TraesCS6A01G318500 chr4D 92.308 117 8 1 4180 4295 498049952 498050068 9.550000e-37 165
15 TraesCS6A01G318500 chr3D 87.814 279 26 5 233 507 300227754 300227480 1.930000e-83 320
16 TraesCS6A01G318500 chr3A 87.814 279 26 5 233 507 312677414 312677140 1.930000e-83 320
17 TraesCS6A01G318500 chr1D 87.814 279 26 5 233 507 182289741 182290015 1.930000e-83 320
18 TraesCS6A01G318500 chr5D 87.455 279 27 5 233 507 188385966 188385692 8.970000e-82 315
19 TraesCS6A01G318500 chr5D 92.241 116 8 1 4181 4295 575283 575398 3.440000e-36 163
20 TraesCS6A01G318500 chr5D 90.598 117 9 2 4181 4295 436422399 436422515 2.070000e-33 154
21 TraesCS6A01G318500 chr4B 87.410 278 25 6 233 507 451913326 451913056 1.160000e-80 311
22 TraesCS6A01G318500 chr1B 86.879 282 29 4 233 510 659768584 659768307 4.170000e-80 309
23 TraesCS6A01G318500 chr2A 93.162 117 7 1 4180 4295 729191553 729191669 2.050000e-38 171
24 TraesCS6A01G318500 chr2D 92.982 114 7 1 4181 4293 142701658 142701771 9.550000e-37 165
25 TraesCS6A01G318500 chr2D 91.453 117 9 1 4180 4295 367502165 367502049 4.450000e-35 159
26 TraesCS6A01G318500 chr7D 92.105 114 8 1 4181 4293 565464677 565464564 4.450000e-35 159
27 TraesCS6A01G318500 chr7D 91.304 115 9 1 4180 4293 135047501 135047615 5.750000e-34 156
28 TraesCS6A01G318500 chr7D 90.517 116 11 0 4180 4295 579762685 579762570 2.070000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G318500 chr6A 554515175 554519469 4294 False 7932.000000 7932 100.000000 1 4295 1 chr6A.!!$F1 4294
1 TraesCS6A01G318500 chr6B 613298114 613301414 3300 False 2549.000000 4735 94.552500 1 3589 2 chr6B.!!$F3 3588
2 TraesCS6A01G318500 chr6D 408687010 408690963 3953 False 1771.666667 2671 93.132333 297 4109 3 chr6D.!!$F3 3812

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
555 572 0.974010 GGTCCCATAGTGACGGGTCA 60.974 60.0 0.0 0.0 43.57 4.02 F
1312 1334 0.178992 ACATGGTGTCAAGGGTGTGG 60.179 55.0 0.0 0.0 0.00 4.17 F
1470 1492 0.543277 TCAATGGATTCGGCAGCTCT 59.457 50.0 0.0 0.0 0.00 4.09 F
1483 1505 0.809385 CAGCTCTCCTGCCAACATTG 59.191 55.0 0.0 0.0 34.21 2.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1493 1515 0.106015 ACAAAGCTGGCTTGGTCCTT 60.106 50.000 9.32 0.0 35.43 3.36 R
2726 2852 2.338809 TCCAACCACAAGGAGACTCAT 58.661 47.619 4.53 0.0 42.68 2.90 R
2955 3081 3.181454 CCTGCTGGAGTATATTTTCGGGT 60.181 47.826 2.92 0.0 34.57 5.28 R
3495 3621 0.456628 TGTCGTGGAAGTGTCGAACA 59.543 50.000 0.00 0.0 35.44 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 4.311816 AGATTCTTTTGTGCACCAACAG 57.688 40.909 15.69 10.95 33.07 3.16
200 204 1.507141 CCGTGACACTGACCCAAAGC 61.507 60.000 3.68 0.00 0.00 3.51
206 211 1.341976 ACACTGACCCAAAGCAAACCT 60.342 47.619 0.00 0.00 0.00 3.50
221 226 1.594331 AACCTTCTGCGTCAAAGACC 58.406 50.000 0.00 0.00 0.00 3.85
226 231 3.304057 CCTTCTGCGTCAAAGACCTTTTC 60.304 47.826 0.00 0.00 0.00 2.29
227 232 3.194005 TCTGCGTCAAAGACCTTTTCT 57.806 42.857 0.00 0.00 35.32 2.52
240 245 7.747155 AAGACCTTTTCTTTTAAGGCTAGTC 57.253 36.000 0.00 0.00 42.37 2.59
241 246 6.838382 AGACCTTTTCTTTTAAGGCTAGTCA 58.162 36.000 0.00 0.00 44.91 3.41
242 247 7.462590 AGACCTTTTCTTTTAAGGCTAGTCAT 58.537 34.615 0.00 0.00 44.91 3.06
243 248 8.603304 AGACCTTTTCTTTTAAGGCTAGTCATA 58.397 33.333 0.00 0.00 44.91 2.15
244 249 8.794335 ACCTTTTCTTTTAAGGCTAGTCATAG 57.206 34.615 0.00 0.00 44.91 2.23
245 250 8.383947 ACCTTTTCTTTTAAGGCTAGTCATAGT 58.616 33.333 0.00 0.00 44.91 2.12
246 251 8.669243 CCTTTTCTTTTAAGGCTAGTCATAGTG 58.331 37.037 0.00 0.00 36.08 2.74
247 252 8.561738 TTTTCTTTTAAGGCTAGTCATAGTGG 57.438 34.615 0.00 0.00 0.00 4.00
248 253 6.235231 TCTTTTAAGGCTAGTCATAGTGGG 57.765 41.667 0.00 0.00 0.00 4.61
249 254 5.962031 TCTTTTAAGGCTAGTCATAGTGGGA 59.038 40.000 0.00 0.00 0.00 4.37
250 255 5.871396 TTTAAGGCTAGTCATAGTGGGAG 57.129 43.478 0.00 0.00 0.00 4.30
251 256 3.406512 AAGGCTAGTCATAGTGGGAGT 57.593 47.619 0.00 0.00 0.00 3.85
252 257 4.537945 AAGGCTAGTCATAGTGGGAGTA 57.462 45.455 0.00 0.00 0.00 2.59
253 258 4.537945 AGGCTAGTCATAGTGGGAGTAA 57.462 45.455 0.00 0.00 0.00 2.24
254 259 4.216708 AGGCTAGTCATAGTGGGAGTAAC 58.783 47.826 0.00 0.00 0.00 2.50
255 260 4.079096 AGGCTAGTCATAGTGGGAGTAACT 60.079 45.833 0.00 0.00 0.00 2.24
256 261 4.650131 GGCTAGTCATAGTGGGAGTAACTT 59.350 45.833 0.00 0.00 0.00 2.66
257 262 5.832060 GGCTAGTCATAGTGGGAGTAACTTA 59.168 44.000 0.00 0.00 0.00 2.24
258 263 6.016108 GGCTAGTCATAGTGGGAGTAACTTAG 60.016 46.154 0.00 0.00 0.00 2.18
259 264 6.016108 GCTAGTCATAGTGGGAGTAACTTAGG 60.016 46.154 0.00 0.00 0.00 2.69
260 265 5.840081 AGTCATAGTGGGAGTAACTTAGGT 58.160 41.667 0.00 0.00 0.00 3.08
261 266 5.657302 AGTCATAGTGGGAGTAACTTAGGTG 59.343 44.000 0.00 0.00 0.00 4.00
262 267 5.655532 GTCATAGTGGGAGTAACTTAGGTGA 59.344 44.000 0.00 0.00 0.00 4.02
263 268 5.892119 TCATAGTGGGAGTAACTTAGGTGAG 59.108 44.000 0.00 0.00 0.00 3.51
264 269 4.129317 AGTGGGAGTAACTTAGGTGAGT 57.871 45.455 0.00 0.00 0.00 3.41
265 270 5.266709 AGTGGGAGTAACTTAGGTGAGTA 57.733 43.478 0.00 0.00 0.00 2.59
266 271 5.648247 AGTGGGAGTAACTTAGGTGAGTAA 58.352 41.667 0.00 0.00 0.00 2.24
267 272 5.479724 AGTGGGAGTAACTTAGGTGAGTAAC 59.520 44.000 0.00 0.00 0.00 2.50
268 273 5.244626 GTGGGAGTAACTTAGGTGAGTAACA 59.755 44.000 0.00 0.00 0.00 2.41
269 274 6.021030 TGGGAGTAACTTAGGTGAGTAACAT 58.979 40.000 0.00 0.00 0.00 2.71
270 275 7.123247 GTGGGAGTAACTTAGGTGAGTAACATA 59.877 40.741 0.00 0.00 0.00 2.29
271 276 7.675195 TGGGAGTAACTTAGGTGAGTAACATAA 59.325 37.037 0.00 0.00 34.10 1.90
272 277 7.978414 GGGAGTAACTTAGGTGAGTAACATAAC 59.022 40.741 0.00 0.00 31.96 1.89
273 278 8.526147 GGAGTAACTTAGGTGAGTAACATAACA 58.474 37.037 0.00 0.00 31.96 2.41
274 279 9.351570 GAGTAACTTAGGTGAGTAACATAACAC 57.648 37.037 0.00 0.00 31.96 3.32
275 280 8.863086 AGTAACTTAGGTGAGTAACATAACACA 58.137 33.333 0.00 0.00 31.96 3.72
276 281 9.649167 GTAACTTAGGTGAGTAACATAACACAT 57.351 33.333 0.00 0.00 31.96 3.21
278 283 9.569122 AACTTAGGTGAGTAACATAACACATTT 57.431 29.630 0.00 0.00 31.96 2.32
279 284 9.216117 ACTTAGGTGAGTAACATAACACATTTC 57.784 33.333 0.00 0.00 31.96 2.17
280 285 9.214957 CTTAGGTGAGTAACATAACACATTTCA 57.785 33.333 0.00 0.00 31.96 2.69
281 286 9.562408 TTAGGTGAGTAACATAACACATTTCAA 57.438 29.630 0.00 0.00 30.35 2.69
282 287 8.458573 AGGTGAGTAACATAACACATTTCAAA 57.541 30.769 0.00 0.00 35.33 2.69
283 288 8.908903 AGGTGAGTAACATAACACATTTCAAAA 58.091 29.630 0.00 0.00 35.33 2.44
284 289 8.964150 GGTGAGTAACATAACACATTTCAAAAC 58.036 33.333 0.00 0.00 35.33 2.43
285 290 9.509855 GTGAGTAACATAACACATTTCAAAACA 57.490 29.630 0.00 0.00 34.05 2.83
320 325 7.340122 TGTGACATAGAGTTAATGAGGAGAG 57.660 40.000 0.00 0.00 0.00 3.20
325 330 9.733556 GACATAGAGTTAATGAGGAGAGAGATA 57.266 37.037 0.00 0.00 0.00 1.98
389 394 6.489127 CCTCGAGGTAATATGAGTCTACAG 57.511 45.833 24.04 0.00 0.00 2.74
390 395 5.998981 CCTCGAGGTAATATGAGTCTACAGT 59.001 44.000 24.04 0.00 0.00 3.55
391 396 7.160049 CCTCGAGGTAATATGAGTCTACAGTA 58.840 42.308 24.04 0.00 0.00 2.74
392 397 7.825270 CCTCGAGGTAATATGAGTCTACAGTAT 59.175 40.741 24.04 0.00 0.00 2.12
402 407 7.847711 ATGAGTCTACAGTATAATGAAGGCT 57.152 36.000 7.27 0.05 0.00 4.58
403 408 7.661536 TGAGTCTACAGTATAATGAAGGCTT 57.338 36.000 7.27 0.00 0.00 4.35
439 454 8.528643 CATCCATATCTTACTACCCATTACGAA 58.471 37.037 0.00 0.00 0.00 3.85
440 455 8.118976 TCCATATCTTACTACCCATTACGAAG 57.881 38.462 0.00 0.00 0.00 3.79
441 456 7.177921 TCCATATCTTACTACCCATTACGAAGG 59.822 40.741 0.00 0.00 0.00 3.46
442 457 7.039223 CCATATCTTACTACCCATTACGAAGGT 60.039 40.741 0.00 0.00 37.69 3.50
444 459 5.263599 TCTTACTACCCATTACGAAGGTGA 58.736 41.667 0.00 0.00 35.02 4.02
445 460 5.895534 TCTTACTACCCATTACGAAGGTGAT 59.104 40.000 0.00 0.00 35.02 3.06
447 462 7.560991 TCTTACTACCCATTACGAAGGTGATAA 59.439 37.037 0.00 0.00 35.02 1.75
448 463 5.910614 ACTACCCATTACGAAGGTGATAAC 58.089 41.667 0.00 0.00 35.02 1.89
457 473 9.613957 CATTACGAAGGTGATAACATAGACTAG 57.386 37.037 0.00 0.00 0.00 2.57
461 477 9.352191 ACGAAGGTGATAACATAGACTAGTAAT 57.648 33.333 0.00 0.00 0.00 1.89
498 514 4.037684 CGGTCTAAGTTACTCCCCACTATG 59.962 50.000 0.00 0.00 0.00 2.23
551 568 1.520666 GGTGGTCCCATAGTGACGG 59.479 63.158 0.00 0.00 33.46 4.79
555 572 0.974010 GGTCCCATAGTGACGGGTCA 60.974 60.000 0.00 0.00 43.57 4.02
649 667 5.590104 TTCATAAATATCGCGTCACCATG 57.410 39.130 5.77 4.60 0.00 3.66
826 846 2.644992 GCCTCACAACGCAAAGGG 59.355 61.111 0.00 0.00 0.00 3.95
827 847 2.644992 CCTCACAACGCAAAGGGC 59.355 61.111 0.00 0.00 39.90 5.19
828 848 1.898574 CCTCACAACGCAAAGGGCT 60.899 57.895 0.00 0.00 41.67 5.19
829 849 1.576421 CTCACAACGCAAAGGGCTC 59.424 57.895 0.00 0.00 41.67 4.70
830 850 1.856265 CTCACAACGCAAAGGGCTCC 61.856 60.000 0.00 0.00 41.67 4.70
1203 1224 2.491022 GGTGAGCTATCCCGACGCT 61.491 63.158 0.00 0.00 36.57 5.07
1204 1225 1.437986 GTGAGCTATCCCGACGCTT 59.562 57.895 0.00 0.00 33.47 4.68
1205 1226 0.179108 GTGAGCTATCCCGACGCTTT 60.179 55.000 0.00 0.00 33.47 3.51
1206 1227 0.535335 TGAGCTATCCCGACGCTTTT 59.465 50.000 0.00 0.00 33.47 2.27
1312 1334 0.178992 ACATGGTGTCAAGGGTGTGG 60.179 55.000 0.00 0.00 0.00 4.17
1373 1395 1.131883 CAACCTGCACTGATAAGCTGC 59.868 52.381 0.00 0.00 0.00 5.25
1443 1465 1.671979 GGGCGTTCTTGTAATACCCC 58.328 55.000 0.00 0.00 0.00 4.95
1461 1483 8.712228 AATACCCCTTTCTAATCAATGGATTC 57.288 34.615 0.00 0.00 42.66 2.52
1470 1492 0.543277 TCAATGGATTCGGCAGCTCT 59.457 50.000 0.00 0.00 0.00 4.09
1483 1505 0.809385 CAGCTCTCCTGCCAACATTG 59.191 55.000 0.00 0.00 34.21 2.82
1485 1507 1.093159 GCTCTCCTGCCAACATTGAG 58.907 55.000 0.00 0.00 0.00 3.02
1490 1512 4.214310 TCTCCTGCCAACATTGAGAAAAA 58.786 39.130 0.00 0.00 33.21 1.94
1532 1554 5.017294 TGTGTTTGGTTTGAAATTCCCTC 57.983 39.130 0.00 0.00 0.00 4.30
1543 1566 2.514522 AATTCCCTCCTCTGCCCCCT 62.515 60.000 0.00 0.00 0.00 4.79
1544 1567 3.950861 TTCCCTCCTCTGCCCCCTG 62.951 68.421 0.00 0.00 0.00 4.45
1650 1673 5.483231 TCATATTTGTTTGGAATTCCCTGCA 59.517 36.000 21.90 13.84 35.38 4.41
1651 1674 4.703379 ATTTGTTTGGAATTCCCTGCAA 57.297 36.364 21.90 18.38 35.38 4.08
1658 1681 1.272147 GGAATTCCCTGCAACTCCTGT 60.272 52.381 14.03 0.00 0.00 4.00
1676 1701 8.694581 ACTCCTGTTCCTATAGTAACATACTC 57.305 38.462 10.90 0.00 40.14 2.59
1718 1743 6.441274 GCTTATGCTATGTGTGTTGCATTAT 58.559 36.000 4.65 0.00 42.60 1.28
1719 1744 6.580041 GCTTATGCTATGTGTGTTGCATTATC 59.420 38.462 4.65 0.00 42.60 1.75
1794 1827 2.513753 TCCAATTTGGTCGCATCTTGT 58.486 42.857 14.98 0.00 39.03 3.16
1806 1839 2.355756 CGCATCTTGTATCTTGGGGTTG 59.644 50.000 0.00 0.00 0.00 3.77
1821 1854 2.904434 GGGGTTGGTCTGACTTAGAGAA 59.096 50.000 7.85 0.00 35.70 2.87
1822 1855 3.326880 GGGGTTGGTCTGACTTAGAGAAA 59.673 47.826 7.85 0.00 35.70 2.52
1871 1905 6.605594 TGTAGTTTTCCATCCTTGTCTTTTGT 59.394 34.615 0.00 0.00 0.00 2.83
1902 1936 9.520515 TTCTCCTAAAATGTAGAGCTCAAAATT 57.479 29.630 17.77 9.07 0.00 1.82
1942 1976 1.339247 CCCTAACATGGCACCACGTTA 60.339 52.381 7.98 7.98 34.16 3.18
2095 2218 6.426937 TCTGTTGTACTTGTAGAATTGAAGCC 59.573 38.462 0.00 0.00 0.00 4.35
2097 2220 5.142061 TGTACTTGTAGAATTGAAGCCGA 57.858 39.130 0.00 0.00 0.00 5.54
2208 2331 3.521560 TGCTGTACTTTTCTATGCCTCG 58.478 45.455 0.00 0.00 0.00 4.63
2327 2450 1.666209 CCAAGGTATGCCCGCCTTTG 61.666 60.000 0.00 0.00 42.68 2.77
2390 2513 8.349983 ACTGTTTGTTTTATGATGGAGTGTAAC 58.650 33.333 0.00 0.00 0.00 2.50
2429 2552 7.627311 ACTGCAGCATAATATCAAGATATGGA 58.373 34.615 15.27 0.00 34.45 3.41
2556 2679 4.851014 CAGGTGTGTAAATTGTTGCATACG 59.149 41.667 0.00 0.00 40.68 3.06
2725 2851 6.357367 ACATCTTTGTTCCAAACTAGTGTCT 58.643 36.000 0.00 0.00 29.55 3.41
2726 2852 7.506114 ACATCTTTGTTCCAAACTAGTGTCTA 58.494 34.615 0.00 0.00 29.55 2.59
2752 2878 2.930950 CTCCTTGTGGTTGGAGTTTGA 58.069 47.619 0.00 0.00 43.49 2.69
2789 2915 7.812191 TGTTGTGTTTATGATATCTTTTGTGGC 59.188 33.333 3.98 0.00 0.00 5.01
2955 3081 3.545124 ATTCTGGTGGGCGCGTTCA 62.545 57.895 8.43 3.35 0.00 3.18
3381 3507 3.923017 ATCTGTTGTAACCAGCTTTGC 57.077 42.857 0.00 0.00 0.00 3.68
3491 3617 7.232118 ACATATTCTTGGAGGAAAAAGGTTG 57.768 36.000 0.00 0.00 0.00 3.77
3492 3618 7.010160 ACATATTCTTGGAGGAAAAAGGTTGA 58.990 34.615 0.00 0.00 0.00 3.18
3493 3619 5.791336 ATTCTTGGAGGAAAAAGGTTGAC 57.209 39.130 0.00 0.00 0.00 3.18
3494 3620 3.211045 TCTTGGAGGAAAAAGGTTGACG 58.789 45.455 0.00 0.00 0.00 4.35
3495 3621 2.721425 TGGAGGAAAAAGGTTGACGT 57.279 45.000 0.00 0.00 0.00 4.34
3496 3622 2.294074 TGGAGGAAAAAGGTTGACGTG 58.706 47.619 0.00 0.00 0.00 4.49
3497 3623 2.294979 GGAGGAAAAAGGTTGACGTGT 58.705 47.619 0.00 0.00 0.00 4.49
3498 3624 2.686405 GGAGGAAAAAGGTTGACGTGTT 59.314 45.455 0.00 0.00 0.00 3.32
3499 3625 3.242969 GGAGGAAAAAGGTTGACGTGTTC 60.243 47.826 0.00 0.00 0.00 3.18
3500 3626 2.353579 AGGAAAAAGGTTGACGTGTTCG 59.646 45.455 0.00 0.00 43.34 3.95
3501 3627 2.352342 GGAAAAAGGTTGACGTGTTCGA 59.648 45.455 0.00 0.00 40.62 3.71
3502 3628 3.348309 GAAAAAGGTTGACGTGTTCGAC 58.652 45.455 0.00 0.00 40.62 4.20
3503 3629 2.012937 AAAGGTTGACGTGTTCGACA 57.987 45.000 0.00 0.00 40.16 4.35
3504 3630 1.283736 AAGGTTGACGTGTTCGACAC 58.716 50.000 0.00 7.74 45.26 3.67
3513 3639 0.850856 GTGTTCGACACTTCCACGAC 59.149 55.000 9.86 0.00 45.27 4.34
3523 3649 4.894784 ACACTTCCACGACATGTTAGAAT 58.105 39.130 0.00 0.00 0.00 2.40
3527 3653 6.367695 CACTTCCACGACATGTTAGAATTGTA 59.632 38.462 0.00 0.00 0.00 2.41
3544 3670 1.281577 TGTATGCATGGCCTCTGTTCA 59.718 47.619 10.16 0.00 0.00 3.18
3558 3684 4.823989 CCTCTGTTCAAAAGTTGAGGATGT 59.176 41.667 0.00 0.00 42.48 3.06
3559 3685 5.049129 CCTCTGTTCAAAAGTTGAGGATGTC 60.049 44.000 0.00 0.00 42.48 3.06
3579 3705 2.162681 CAGAACTAGGGTTTTGGGCTG 58.837 52.381 0.00 0.00 34.96 4.85
3580 3706 1.075536 AGAACTAGGGTTTTGGGCTGG 59.924 52.381 0.00 0.00 35.58 4.85
3611 3794 3.495753 ACGGTCGTTTCCTTTGTATGTTC 59.504 43.478 0.00 0.00 0.00 3.18
3616 3799 3.059188 CGTTTCCTTTGTATGTTCGCAGT 60.059 43.478 0.00 0.00 0.00 4.40
3659 3842 7.088589 AGATACATGTATGAACTTGTTTGGC 57.911 36.000 22.93 3.92 42.29 4.52
3665 3848 1.686355 TGAACTTGTTTGGCATCGGT 58.314 45.000 0.00 0.00 0.00 4.69
3666 3849 2.852449 TGAACTTGTTTGGCATCGGTA 58.148 42.857 0.00 0.00 0.00 4.02
3676 3859 2.571212 TGGCATCGGTATGTGATTTCC 58.429 47.619 0.00 0.00 35.38 3.13
3680 3863 2.702592 TCGGTATGTGATTTCCCCAC 57.297 50.000 0.00 0.00 35.23 4.61
3681 3864 1.210967 TCGGTATGTGATTTCCCCACC 59.789 52.381 0.00 0.00 33.80 4.61
3708 3891 6.402766 CGTTTGGTTCAGTTTGTTACTCAGAA 60.403 38.462 0.00 0.00 33.85 3.02
3709 3892 6.677781 TTGGTTCAGTTTGTTACTCAGAAG 57.322 37.500 0.00 0.00 33.85 2.85
3719 3902 7.702348 AGTTTGTTACTCAGAAGTGCAAAAATC 59.298 33.333 0.00 0.00 40.26 2.17
3723 3906 5.841957 ACTCAGAAGTGCAAAAATCTGTT 57.158 34.783 14.97 5.40 40.11 3.16
3729 3912 4.058721 AGTGCAAAAATCTGTTGGTTCC 57.941 40.909 0.00 0.00 0.00 3.62
3732 3915 3.130633 GCAAAAATCTGTTGGTTCCACC 58.869 45.455 0.00 0.00 39.22 4.61
3748 3931 4.280436 TCCACCACGTATTTGAAGATGT 57.720 40.909 0.00 0.00 0.00 3.06
3764 3947 7.462109 TGAAGATGTTGTTACAAATTTGCAC 57.538 32.000 18.12 14.76 37.91 4.57
3771 3954 2.008242 TACAAATTTGCACCAGGCCT 57.992 45.000 18.12 0.00 43.89 5.19
3794 3977 2.100989 GTATGAACGGAGTCCAGGAGT 58.899 52.381 10.49 0.00 45.00 3.85
3821 4014 2.996249 ATGTAGATCCCACTGCACTG 57.004 50.000 0.00 0.00 35.59 3.66
3824 4017 3.642141 TGTAGATCCCACTGCACTGATA 58.358 45.455 0.00 0.00 0.00 2.15
3825 4018 4.226384 TGTAGATCCCACTGCACTGATAT 58.774 43.478 0.00 0.00 0.00 1.63
3829 4022 4.842948 AGATCCCACTGCACTGATATACAT 59.157 41.667 0.00 0.00 0.00 2.29
3839 4032 8.307483 ACTGCACTGATATACATGATTAGTACC 58.693 37.037 0.00 0.00 0.00 3.34
3840 4033 7.312899 TGCACTGATATACATGATTAGTACCG 58.687 38.462 0.00 0.00 0.00 4.02
3841 4034 7.175990 TGCACTGATATACATGATTAGTACCGA 59.824 37.037 0.00 0.00 0.00 4.69
3842 4035 8.027189 GCACTGATATACATGATTAGTACCGAA 58.973 37.037 0.00 0.00 0.00 4.30
3843 4036 9.561270 CACTGATATACATGATTAGTACCGAAG 57.439 37.037 0.00 0.00 0.00 3.79
3844 4037 9.298250 ACTGATATACATGATTAGTACCGAAGT 57.702 33.333 0.00 0.00 0.00 3.01
3879 4072 4.021229 TGAGGATGTACCGTGAGTTACAT 58.979 43.478 0.00 0.00 44.74 2.29
3880 4073 4.142249 TGAGGATGTACCGTGAGTTACATG 60.142 45.833 0.00 0.00 44.74 3.21
3896 4089 1.080435 CATGATCGACTGCACACGCT 61.080 55.000 0.00 0.00 39.64 5.07
3902 4095 1.612469 CGACTGCACACGCTCTTGAG 61.612 60.000 0.00 0.00 39.64 3.02
3903 4096 1.895280 GACTGCACACGCTCTTGAGC 61.895 60.000 12.20 12.20 39.64 4.26
3905 4098 1.296755 CTGCACACGCTCTTGAGCAT 61.297 55.000 20.59 4.35 41.43 3.79
3908 4101 3.174462 GCACACGCTCTTGAGCATCAG 62.174 57.143 20.59 8.23 40.48 2.90
3917 4110 1.903294 TGAGCATCAGTCTCTGGGC 59.097 57.895 0.00 2.42 42.56 5.36
3918 4111 0.616964 TGAGCATCAGTCTCTGGGCT 60.617 55.000 13.37 13.37 42.56 5.19
3920 4113 1.153208 GCATCAGTCTCTGGGCTGG 60.153 63.158 0.00 0.00 32.48 4.85
3921 4114 1.153208 CATCAGTCTCTGGGCTGGC 60.153 63.158 0.00 0.00 33.81 4.85
3922 4115 2.729479 ATCAGTCTCTGGGCTGGCG 61.729 63.158 0.00 0.00 33.81 5.69
3923 4116 3.385384 CAGTCTCTGGGCTGGCGA 61.385 66.667 0.00 0.00 0.00 5.54
3926 4119 2.604686 TCTCTGGGCTGGCGAAGT 60.605 61.111 0.00 0.00 0.00 3.01
3927 4120 2.435586 CTCTGGGCTGGCGAAGTG 60.436 66.667 0.00 0.00 0.00 3.16
3928 4121 3.965539 CTCTGGGCTGGCGAAGTGG 62.966 68.421 0.00 0.00 0.00 4.00
3930 4123 4.641645 TGGGCTGGCGAAGTGGTG 62.642 66.667 0.00 0.00 0.00 4.17
3934 4127 3.730761 CTGGCGAAGTGGTGCAGC 61.731 66.667 9.47 9.47 0.00 5.25
3960 4172 3.795041 CAGGGCCTCCTCCTGCTG 61.795 72.222 0.95 0.00 44.29 4.41
3969 4181 3.324930 CTCCTGCTGCTCCCACCA 61.325 66.667 0.00 0.00 0.00 4.17
3979 4191 1.301677 GCTCCCACCAAAGCTTCTCG 61.302 60.000 0.00 0.00 35.60 4.04
4011 4223 0.254178 AGCATGGTCACCATCTCCAC 59.746 55.000 6.26 0.00 43.15 4.02
4013 4225 0.914644 CATGGTCACCATCTCCACCT 59.085 55.000 6.26 0.00 43.15 4.00
4027 4239 1.377994 CACCTTCTCCCTGCTGCTT 59.622 57.895 0.00 0.00 0.00 3.91
4054 4266 2.737376 GTGTCCGTCCCGTTGCTC 60.737 66.667 0.00 0.00 0.00 4.26
4056 4268 4.754667 GTCCGTCCCGTTGCTCCC 62.755 72.222 0.00 0.00 0.00 4.30
4109 4321 4.457496 CCATCCGGTGCTCTGCGT 62.457 66.667 0.00 0.00 0.00 5.24
4110 4322 2.887568 CATCCGGTGCTCTGCGTC 60.888 66.667 0.00 0.00 0.00 5.19
4111 4323 4.148825 ATCCGGTGCTCTGCGTCC 62.149 66.667 0.00 0.00 0.00 4.79
4113 4325 4.803426 CCGGTGCTCTGCGTCCTC 62.803 72.222 0.00 0.00 0.00 3.71
4114 4326 3.753434 CGGTGCTCTGCGTCCTCT 61.753 66.667 0.00 0.00 0.00 3.69
4115 4327 2.125753 GGTGCTCTGCGTCCTCTG 60.126 66.667 0.00 0.00 0.00 3.35
4116 4328 2.813042 GTGCTCTGCGTCCTCTGC 60.813 66.667 0.00 0.00 0.00 4.26
4117 4329 4.074526 TGCTCTGCGTCCTCTGCC 62.075 66.667 0.00 0.00 0.00 4.85
4119 4331 3.443925 CTCTGCGTCCTCTGCCGA 61.444 66.667 0.00 0.00 0.00 5.54
4120 4332 3.408501 CTCTGCGTCCTCTGCCGAG 62.409 68.421 0.00 0.00 37.35 4.63
4121 4333 3.753434 CTGCGTCCTCTGCCGAGT 61.753 66.667 4.34 0.00 35.43 4.18
4122 4334 3.288308 CTGCGTCCTCTGCCGAGTT 62.288 63.158 4.34 0.00 35.43 3.01
4123 4335 2.048127 GCGTCCTCTGCCGAGTTT 60.048 61.111 4.34 0.00 35.43 2.66
4124 4336 2.383527 GCGTCCTCTGCCGAGTTTG 61.384 63.158 4.34 0.00 35.43 2.93
4125 4337 1.738099 CGTCCTCTGCCGAGTTTGG 60.738 63.158 4.34 0.00 35.43 3.28
4132 4344 3.660111 GCCGAGTTTGGCGTGCTT 61.660 61.111 0.00 0.00 46.75 3.91
4133 4345 2.252260 CCGAGTTTGGCGTGCTTG 59.748 61.111 0.00 0.00 0.00 4.01
4134 4346 2.250939 CCGAGTTTGGCGTGCTTGA 61.251 57.895 0.00 0.00 0.00 3.02
4135 4347 1.646540 CGAGTTTGGCGTGCTTGAA 59.353 52.632 0.00 0.00 0.00 2.69
4136 4348 0.657368 CGAGTTTGGCGTGCTTGAAC 60.657 55.000 0.00 0.00 0.00 3.18
4137 4349 0.380378 GAGTTTGGCGTGCTTGAACA 59.620 50.000 0.00 0.00 0.00 3.18
4138 4350 0.381801 AGTTTGGCGTGCTTGAACAG 59.618 50.000 0.00 0.00 0.00 3.16
4139 4351 0.594796 GTTTGGCGTGCTTGAACAGG 60.595 55.000 0.00 0.00 0.00 4.00
4140 4352 0.749818 TTTGGCGTGCTTGAACAGGA 60.750 50.000 0.00 0.00 0.00 3.86
4141 4353 0.749818 TTGGCGTGCTTGAACAGGAA 60.750 50.000 0.00 0.00 0.00 3.36
4142 4354 1.282875 GGCGTGCTTGAACAGGAAC 59.717 57.895 0.00 0.00 0.00 3.62
4143 4355 1.444119 GGCGTGCTTGAACAGGAACA 61.444 55.000 0.00 0.00 0.00 3.18
4144 4356 0.317020 GCGTGCTTGAACAGGAACAC 60.317 55.000 0.00 0.00 0.00 3.32
4145 4357 1.299541 CGTGCTTGAACAGGAACACT 58.700 50.000 0.00 0.00 0.00 3.55
4156 4368 2.564771 CAGGAACACTGCACAGAAAGA 58.435 47.619 4.31 0.00 40.97 2.52
4157 4369 2.547211 CAGGAACACTGCACAGAAAGAG 59.453 50.000 4.31 0.00 40.97 2.85
4158 4370 2.435805 AGGAACACTGCACAGAAAGAGA 59.564 45.455 4.31 0.00 0.00 3.10
4159 4371 2.545946 GGAACACTGCACAGAAAGAGAC 59.454 50.000 4.31 0.00 0.00 3.36
4160 4372 3.462021 GAACACTGCACAGAAAGAGACT 58.538 45.455 4.31 0.00 0.00 3.24
4161 4373 3.104843 ACACTGCACAGAAAGAGACTC 57.895 47.619 4.31 0.00 0.00 3.36
4162 4374 2.057316 CACTGCACAGAAAGAGACTCG 58.943 52.381 4.31 0.00 0.00 4.18
4163 4375 1.683917 ACTGCACAGAAAGAGACTCGT 59.316 47.619 4.31 0.00 0.00 4.18
4164 4376 2.101582 ACTGCACAGAAAGAGACTCGTT 59.898 45.455 4.31 3.09 0.00 3.85
4165 4377 3.126831 CTGCACAGAAAGAGACTCGTTT 58.873 45.455 5.09 2.86 0.00 3.60
4166 4378 3.531538 TGCACAGAAAGAGACTCGTTTT 58.468 40.909 5.09 0.00 0.00 2.43
4167 4379 3.938963 TGCACAGAAAGAGACTCGTTTTT 59.061 39.130 5.09 0.00 0.00 1.94
4168 4380 4.034048 TGCACAGAAAGAGACTCGTTTTTC 59.966 41.667 5.09 6.37 0.00 2.29
4169 4381 4.034048 GCACAGAAAGAGACTCGTTTTTCA 59.966 41.667 14.62 0.00 33.19 2.69
4170 4382 5.732288 CACAGAAAGAGACTCGTTTTTCAG 58.268 41.667 14.62 10.59 33.19 3.02
4171 4383 4.811557 ACAGAAAGAGACTCGTTTTTCAGG 59.188 41.667 14.62 10.11 33.19 3.86
4172 4384 5.050490 CAGAAAGAGACTCGTTTTTCAGGA 58.950 41.667 14.62 0.00 33.19 3.86
4173 4385 5.523916 CAGAAAGAGACTCGTTTTTCAGGAA 59.476 40.000 14.62 0.00 33.19 3.36
4174 4386 5.755861 AGAAAGAGACTCGTTTTTCAGGAAG 59.244 40.000 14.62 0.00 33.19 3.46
4175 4387 4.674281 AGAGACTCGTTTTTCAGGAAGT 57.326 40.909 0.00 0.00 0.00 3.01
4176 4388 5.024785 AGAGACTCGTTTTTCAGGAAGTT 57.975 39.130 0.00 0.00 0.00 2.66
4177 4389 4.811557 AGAGACTCGTTTTTCAGGAAGTTG 59.188 41.667 0.00 0.00 0.00 3.16
4178 4390 3.877508 AGACTCGTTTTTCAGGAAGTTGG 59.122 43.478 0.00 0.00 0.00 3.77
4179 4391 3.875134 GACTCGTTTTTCAGGAAGTTGGA 59.125 43.478 0.00 0.00 0.00 3.53
4180 4392 4.461198 ACTCGTTTTTCAGGAAGTTGGAT 58.539 39.130 0.00 0.00 0.00 3.41
4181 4393 5.617252 ACTCGTTTTTCAGGAAGTTGGATA 58.383 37.500 0.00 0.00 0.00 2.59
4182 4394 5.469084 ACTCGTTTTTCAGGAAGTTGGATAC 59.531 40.000 0.00 0.00 0.00 2.24
4183 4395 5.617252 TCGTTTTTCAGGAAGTTGGATACT 58.383 37.500 0.00 0.00 39.32 2.12
4184 4396 5.699458 TCGTTTTTCAGGAAGTTGGATACTC 59.301 40.000 0.00 0.00 35.54 2.59
4185 4397 5.106673 CGTTTTTCAGGAAGTTGGATACTCC 60.107 44.000 0.00 0.00 35.54 3.85
4186 4398 4.569719 TTTCAGGAAGTTGGATACTCCC 57.430 45.455 0.00 0.00 35.54 4.30
4187 4399 3.491766 TCAGGAAGTTGGATACTCCCT 57.508 47.619 0.00 0.00 35.54 4.20
4188 4400 3.803340 TCAGGAAGTTGGATACTCCCTT 58.197 45.455 0.00 0.00 35.54 3.95
4189 4401 3.775316 TCAGGAAGTTGGATACTCCCTTC 59.225 47.826 4.50 4.50 35.43 3.46
4190 4402 2.766828 AGGAAGTTGGATACTCCCTTCG 59.233 50.000 6.27 0.00 36.37 3.79
4191 4403 2.500504 GGAAGTTGGATACTCCCTTCGT 59.499 50.000 6.27 0.00 36.37 3.85
4192 4404 3.055312 GGAAGTTGGATACTCCCTTCGTT 60.055 47.826 6.27 0.00 36.37 3.85
4193 4405 3.889520 AGTTGGATACTCCCTTCGTTC 57.110 47.619 0.00 0.00 35.03 3.95
4194 4406 2.500504 AGTTGGATACTCCCTTCGTTCC 59.499 50.000 0.00 0.00 35.03 3.62
4195 4407 2.500504 GTTGGATACTCCCTTCGTTCCT 59.499 50.000 0.00 0.00 35.03 3.36
4196 4408 3.675348 TGGATACTCCCTTCGTTCCTA 57.325 47.619 0.00 0.00 35.03 2.94
4197 4409 3.985127 TGGATACTCCCTTCGTTCCTAA 58.015 45.455 0.00 0.00 35.03 2.69
4198 4410 4.355549 TGGATACTCCCTTCGTTCCTAAA 58.644 43.478 0.00 0.00 35.03 1.85
4199 4411 4.966805 TGGATACTCCCTTCGTTCCTAAAT 59.033 41.667 0.00 0.00 35.03 1.40
4200 4412 6.138263 TGGATACTCCCTTCGTTCCTAAATA 58.862 40.000 0.00 0.00 35.03 1.40
4201 4413 6.785963 TGGATACTCCCTTCGTTCCTAAATAT 59.214 38.462 0.00 0.00 35.03 1.28
4202 4414 7.951806 TGGATACTCCCTTCGTTCCTAAATATA 59.048 37.037 0.00 0.00 35.03 0.86
4203 4415 8.810041 GGATACTCCCTTCGTTCCTAAATATAA 58.190 37.037 0.00 0.00 0.00 0.98
4204 4416 9.857957 GATACTCCCTTCGTTCCTAAATATAAG 57.142 37.037 0.00 0.00 0.00 1.73
4205 4417 7.672122 ACTCCCTTCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
4206 4418 7.724287 ACTCCCTTCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
4207 4419 7.564292 ACTCCCTTCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
4208 4420 8.315220 TCCCTTCGTTCCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
4209 4421 8.765517 TCCCTTCGTTCCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
4210 4422 9.392259 CCCTTCGTTCCTAAATATAAGTCTTTT 57.608 33.333 0.00 0.00 0.00 2.27
4238 4450 9.570468 AAAGATTCCACTATAGACTACATACGA 57.430 33.333 6.78 0.00 0.00 3.43
4239 4451 9.570468 AAGATTCCACTATAGACTACATACGAA 57.430 33.333 6.78 0.00 0.00 3.85
4240 4452 9.221933 AGATTCCACTATAGACTACATACGAAG 57.778 37.037 6.78 0.00 0.00 3.79
4241 4453 6.798315 TCCACTATAGACTACATACGAAGC 57.202 41.667 6.78 0.00 0.00 3.86
4242 4454 6.293698 TCCACTATAGACTACATACGAAGCA 58.706 40.000 6.78 0.00 0.00 3.91
4243 4455 6.769341 TCCACTATAGACTACATACGAAGCAA 59.231 38.462 6.78 0.00 0.00 3.91
4244 4456 7.283807 TCCACTATAGACTACATACGAAGCAAA 59.716 37.037 6.78 0.00 0.00 3.68
4245 4457 7.919091 CCACTATAGACTACATACGAAGCAAAA 59.081 37.037 6.78 0.00 0.00 2.44
4246 4458 9.464714 CACTATAGACTACATACGAAGCAAAAT 57.535 33.333 6.78 0.00 0.00 1.82
4247 4459 9.464714 ACTATAGACTACATACGAAGCAAAATG 57.535 33.333 6.78 0.00 0.00 2.32
4248 4460 9.678941 CTATAGACTACATACGAAGCAAAATGA 57.321 33.333 0.00 0.00 0.00 2.57
4249 4461 6.893958 AGACTACATACGAAGCAAAATGAG 57.106 37.500 0.00 0.00 0.00 2.90
4250 4462 6.398918 AGACTACATACGAAGCAAAATGAGT 58.601 36.000 0.00 0.00 0.00 3.41
4251 4463 6.311445 AGACTACATACGAAGCAAAATGAGTG 59.689 38.462 0.00 0.00 0.00 3.51
4252 4464 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
4253 4465 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
4254 4466 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
4255 4467 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
4256 4468 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
4257 4469 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
4258 4470 6.992063 ACGAAGCAAAATGAGTGAATCTAT 57.008 33.333 0.00 0.00 0.00 1.98
4259 4471 9.764363 ATACGAAGCAAAATGAGTGAATCTATA 57.236 29.630 0.00 0.00 0.00 1.31
4260 4472 7.910304 ACGAAGCAAAATGAGTGAATCTATAC 58.090 34.615 0.00 0.00 0.00 1.47
4261 4473 7.766278 ACGAAGCAAAATGAGTGAATCTATACT 59.234 33.333 0.00 0.00 0.00 2.12
4262 4474 8.607459 CGAAGCAAAATGAGTGAATCTATACTT 58.393 33.333 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.998341 TCGTTGGGTCTATAAACTGCAAC 59.002 43.478 0.00 0.00 0.00 4.17
134 137 3.422303 CGCAACTTGCTGCCGCTA 61.422 61.111 11.93 0.00 42.25 4.26
200 204 2.287009 GGTCTTTGACGCAGAAGGTTTG 60.287 50.000 0.00 0.00 32.65 2.93
206 211 3.541632 AGAAAAGGTCTTTGACGCAGAA 58.458 40.909 0.00 0.00 29.66 3.02
221 226 8.669243 CCACTATGACTAGCCTTAAAAGAAAAG 58.331 37.037 0.00 0.00 0.00 2.27
226 231 6.127026 ACTCCCACTATGACTAGCCTTAAAAG 60.127 42.308 0.00 0.00 0.00 2.27
227 232 5.724854 ACTCCCACTATGACTAGCCTTAAAA 59.275 40.000 0.00 0.00 0.00 1.52
231 236 3.406512 ACTCCCACTATGACTAGCCTT 57.593 47.619 0.00 0.00 0.00 4.35
232 237 4.079096 AGTTACTCCCACTATGACTAGCCT 60.079 45.833 0.00 0.00 0.00 4.58
233 238 4.216708 AGTTACTCCCACTATGACTAGCC 58.783 47.826 0.00 0.00 0.00 3.93
234 239 5.855740 AAGTTACTCCCACTATGACTAGC 57.144 43.478 0.00 0.00 0.00 3.42
235 240 7.013464 CACCTAAGTTACTCCCACTATGACTAG 59.987 44.444 0.00 0.00 0.00 2.57
236 241 6.832384 CACCTAAGTTACTCCCACTATGACTA 59.168 42.308 0.00 0.00 0.00 2.59
237 242 5.657302 CACCTAAGTTACTCCCACTATGACT 59.343 44.000 0.00 0.00 0.00 3.41
238 243 5.655532 TCACCTAAGTTACTCCCACTATGAC 59.344 44.000 0.00 0.00 0.00 3.06
239 244 5.834460 TCACCTAAGTTACTCCCACTATGA 58.166 41.667 0.00 0.00 0.00 2.15
240 245 5.657302 ACTCACCTAAGTTACTCCCACTATG 59.343 44.000 0.00 0.00 0.00 2.23
241 246 5.840081 ACTCACCTAAGTTACTCCCACTAT 58.160 41.667 0.00 0.00 0.00 2.12
242 247 5.266709 ACTCACCTAAGTTACTCCCACTA 57.733 43.478 0.00 0.00 0.00 2.74
243 248 4.129317 ACTCACCTAAGTTACTCCCACT 57.871 45.455 0.00 0.00 0.00 4.00
244 249 5.244626 TGTTACTCACCTAAGTTACTCCCAC 59.755 44.000 0.00 0.00 31.69 4.61
245 250 5.396485 TGTTACTCACCTAAGTTACTCCCA 58.604 41.667 0.00 0.00 31.69 4.37
246 251 5.990120 TGTTACTCACCTAAGTTACTCCC 57.010 43.478 0.00 0.00 31.69 4.30
247 252 8.526147 TGTTATGTTACTCACCTAAGTTACTCC 58.474 37.037 0.00 0.00 31.69 3.85
248 253 9.351570 GTGTTATGTTACTCACCTAAGTTACTC 57.648 37.037 0.00 0.00 31.69 2.59
249 254 8.863086 TGTGTTATGTTACTCACCTAAGTTACT 58.137 33.333 0.00 0.00 31.69 2.24
250 255 9.649167 ATGTGTTATGTTACTCACCTAAGTTAC 57.351 33.333 0.00 0.00 31.19 2.50
252 257 9.569122 AAATGTGTTATGTTACTCACCTAAGTT 57.431 29.630 0.00 0.00 0.00 2.66
253 258 9.216117 GAAATGTGTTATGTTACTCACCTAAGT 57.784 33.333 0.00 0.00 0.00 2.24
254 259 9.214957 TGAAATGTGTTATGTTACTCACCTAAG 57.785 33.333 0.00 0.00 0.00 2.18
255 260 9.562408 TTGAAATGTGTTATGTTACTCACCTAA 57.438 29.630 0.00 0.00 0.00 2.69
256 261 9.562408 TTTGAAATGTGTTATGTTACTCACCTA 57.438 29.630 0.00 0.00 0.00 3.08
257 262 8.458573 TTTGAAATGTGTTATGTTACTCACCT 57.541 30.769 0.00 0.00 0.00 4.00
258 263 8.964150 GTTTTGAAATGTGTTATGTTACTCACC 58.036 33.333 0.00 0.00 0.00 4.02
259 264 9.509855 TGTTTTGAAATGTGTTATGTTACTCAC 57.490 29.630 0.00 0.00 0.00 3.51
290 295 9.599866 CCTCATTAACTCTATGTCACATAAACA 57.400 33.333 0.00 0.00 0.00 2.83
291 296 9.817809 TCCTCATTAACTCTATGTCACATAAAC 57.182 33.333 0.00 0.00 0.00 2.01
293 298 9.421399 TCTCCTCATTAACTCTATGTCACATAA 57.579 33.333 0.00 0.00 0.00 1.90
294 299 8.996651 TCTCCTCATTAACTCTATGTCACATA 57.003 34.615 0.00 0.00 0.00 2.29
295 300 7.782168 TCTCTCCTCATTAACTCTATGTCACAT 59.218 37.037 0.00 0.00 0.00 3.21
296 301 7.119387 TCTCTCCTCATTAACTCTATGTCACA 58.881 38.462 0.00 0.00 0.00 3.58
297 302 7.500892 TCTCTCTCCTCATTAACTCTATGTCAC 59.499 40.741 0.00 0.00 0.00 3.67
298 303 7.578203 TCTCTCTCCTCATTAACTCTATGTCA 58.422 38.462 0.00 0.00 0.00 3.58
299 304 8.635765 ATCTCTCTCCTCATTAACTCTATGTC 57.364 38.462 0.00 0.00 0.00 3.06
300 305 9.515226 GTATCTCTCTCCTCATTAACTCTATGT 57.485 37.037 0.00 0.00 0.00 2.29
315 320 5.916661 TGTTACCACAAGTATCTCTCTCC 57.083 43.478 0.00 0.00 0.00 3.71
386 391 5.195940 ACATGCAAGCCTTCATTATACTGT 58.804 37.500 0.00 0.00 0.00 3.55
387 392 5.762825 ACATGCAAGCCTTCATTATACTG 57.237 39.130 0.00 0.00 0.00 2.74
388 393 7.720957 TGATAACATGCAAGCCTTCATTATACT 59.279 33.333 0.00 0.00 0.00 2.12
389 394 7.874940 TGATAACATGCAAGCCTTCATTATAC 58.125 34.615 0.00 0.00 0.00 1.47
390 395 8.640063 ATGATAACATGCAAGCCTTCATTATA 57.360 30.769 0.00 0.00 35.21 0.98
391 396 6.964807 TGATAACATGCAAGCCTTCATTAT 57.035 33.333 0.00 0.00 0.00 1.28
392 397 6.016024 GGATGATAACATGCAAGCCTTCATTA 60.016 38.462 0.00 0.00 42.90 1.90
394 399 4.280174 GGATGATAACATGCAAGCCTTCAT 59.720 41.667 0.00 0.00 42.90 2.57
396 401 4.234530 GGATGATAACATGCAAGCCTTC 57.765 45.455 0.00 0.00 42.90 3.46
475 491 2.454538 AGTGGGGAGTAACTTAGACCG 58.545 52.381 0.00 0.00 0.00 4.79
480 496 4.950361 TGGTCATAGTGGGGAGTAACTTA 58.050 43.478 0.00 0.00 0.00 2.24
482 498 3.375699 CTGGTCATAGTGGGGAGTAACT 58.624 50.000 0.00 0.00 0.00 2.24
484 500 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
498 514 2.450609 TGTCGTCTTTTAGGCTGGTC 57.549 50.000 0.00 0.00 0.00 4.02
544 561 2.047274 CCGCAATGACCCGTCACT 60.047 61.111 0.00 0.00 43.11 3.41
604 622 1.090052 GCGCCTACACCCACAGAATC 61.090 60.000 0.00 0.00 0.00 2.52
1226 1247 2.987149 CGTCAATAATCTATTCGCCGCT 59.013 45.455 0.00 0.00 0.00 5.52
1312 1334 7.659390 CCAATTGACAGGATAGAAGAACCTATC 59.341 40.741 7.12 0.00 42.55 2.08
1373 1395 9.322776 GAAATTTCTCATAGCTTAACGCATATG 57.677 33.333 11.05 0.00 42.61 1.78
1427 1449 7.767198 TGATTAGAAAGGGGTATTACAAGAACG 59.233 37.037 0.00 0.00 0.00 3.95
1443 1465 5.755813 CTGCCGAATCCATTGATTAGAAAG 58.244 41.667 1.79 0.00 41.30 2.62
1490 1512 1.793414 AAGCTGGCTTGGTCCTTTTT 58.207 45.000 7.05 0.00 34.60 1.94
1491 1513 1.413812 CAAAGCTGGCTTGGTCCTTTT 59.586 47.619 8.66 0.00 36.26 2.27
1492 1514 1.043022 CAAAGCTGGCTTGGTCCTTT 58.957 50.000 8.66 0.00 36.26 3.11
1493 1515 0.106015 ACAAAGCTGGCTTGGTCCTT 60.106 50.000 9.32 0.00 35.43 3.36
1502 1524 1.665169 CAAACCAAACACAAAGCTGGC 59.335 47.619 0.00 0.00 31.74 4.85
1532 1554 4.106925 GAGCACAGGGGGCAGAGG 62.107 72.222 0.00 0.00 0.00 3.69
1543 1566 5.726397 ACAACGTGTTATTATAGGAGCACA 58.274 37.500 0.00 0.00 0.00 4.57
1544 1567 5.233689 GGACAACGTGTTATTATAGGAGCAC 59.766 44.000 0.00 0.00 0.00 4.40
1650 1673 9.134055 GAGTATGTTACTATAGGAACAGGAGTT 57.866 37.037 29.51 17.99 39.59 3.01
1651 1674 8.504409 AGAGTATGTTACTATAGGAACAGGAGT 58.496 37.037 29.51 22.92 39.59 3.85
1658 1681 8.762481 TTCAGCAGAGTATGTTACTATAGGAA 57.238 34.615 4.43 0.00 39.59 3.36
1794 1827 2.915869 AGTCAGACCAACCCCAAGATA 58.084 47.619 0.00 0.00 0.00 1.98
1846 1880 6.605594 ACAAAAGACAAGGATGGAAAACTACA 59.394 34.615 0.00 0.00 0.00 2.74
1847 1881 7.039313 ACAAAAGACAAGGATGGAAAACTAC 57.961 36.000 0.00 0.00 0.00 2.73
1907 1941 8.299570 GCCATGTTAGGGAGAATATGTTTTATG 58.700 37.037 0.00 0.00 0.00 1.90
2019 2139 1.705186 AGGGACAAACAGGCACTACAT 59.295 47.619 0.00 0.00 37.06 2.29
2327 2450 5.774498 AGGAACACATTTTTCTTCAGTCC 57.226 39.130 0.00 0.00 0.00 3.85
2367 2490 7.882179 AGGTTACACTCCATCATAAAACAAAC 58.118 34.615 0.00 0.00 0.00 2.93
2429 2552 8.650490 AGAAATAGTGTTGGAAAACCATGAATT 58.350 29.630 0.00 0.00 0.00 2.17
2556 2679 7.517614 AAGAATGGAAAAGAAGAAAGAGTCC 57.482 36.000 0.00 0.00 0.00 3.85
2725 2851 3.516586 TCCAACCACAAGGAGACTCATA 58.483 45.455 4.53 0.00 42.68 2.15
2726 2852 2.338809 TCCAACCACAAGGAGACTCAT 58.661 47.619 4.53 0.00 42.68 2.90
2789 2915 8.166706 GCAAATCAATTAGAAAAACAGATGCAG 58.833 33.333 0.00 0.00 0.00 4.41
2955 3081 3.181454 CCTGCTGGAGTATATTTTCGGGT 60.181 47.826 2.92 0.00 34.57 5.28
3495 3621 0.456628 TGTCGTGGAAGTGTCGAACA 59.543 50.000 0.00 0.00 35.44 3.18
3496 3622 1.455786 CATGTCGTGGAAGTGTCGAAC 59.544 52.381 0.00 0.00 35.44 3.95
3497 3623 1.067974 ACATGTCGTGGAAGTGTCGAA 59.932 47.619 0.00 0.00 35.44 3.71
3498 3624 0.671796 ACATGTCGTGGAAGTGTCGA 59.328 50.000 0.00 0.00 0.00 4.20
3499 3625 1.497991 AACATGTCGTGGAAGTGTCG 58.502 50.000 0.00 0.00 0.00 4.35
3500 3626 3.909430 TCTAACATGTCGTGGAAGTGTC 58.091 45.455 0.00 0.00 0.00 3.67
3501 3627 4.330944 TTCTAACATGTCGTGGAAGTGT 57.669 40.909 0.00 0.00 0.00 3.55
3502 3628 5.179368 ACAATTCTAACATGTCGTGGAAGTG 59.821 40.000 17.29 17.29 39.71 3.16
3503 3629 5.305585 ACAATTCTAACATGTCGTGGAAGT 58.694 37.500 0.00 0.00 0.00 3.01
3504 3630 5.862924 ACAATTCTAACATGTCGTGGAAG 57.137 39.130 0.00 0.00 0.00 3.46
3513 3639 5.010314 AGGCCATGCATACAATTCTAACATG 59.990 40.000 5.01 0.00 34.60 3.21
3523 3649 2.290832 TGAACAGAGGCCATGCATACAA 60.291 45.455 5.01 0.00 0.00 2.41
3527 3653 1.927487 TTTGAACAGAGGCCATGCAT 58.073 45.000 5.01 0.00 0.00 3.96
3544 3670 6.234177 CCTAGTTCTGACATCCTCAACTTTT 58.766 40.000 0.00 0.00 0.00 2.27
3558 3684 2.062636 AGCCCAAAACCCTAGTTCTGA 58.937 47.619 0.00 0.00 34.19 3.27
3559 3685 2.162681 CAGCCCAAAACCCTAGTTCTG 58.837 52.381 0.00 0.00 34.19 3.02
3579 3705 2.710724 AAACGACCGTGAGCAGTCCC 62.711 60.000 0.00 0.00 0.00 4.46
3580 3706 1.282930 GAAACGACCGTGAGCAGTCC 61.283 60.000 0.00 0.00 0.00 3.85
3589 3715 3.116079 ACATACAAAGGAAACGACCGT 57.884 42.857 0.00 0.00 34.73 4.83
3592 3775 3.059461 TGCGAACATACAAAGGAAACGAC 60.059 43.478 0.00 0.00 0.00 4.34
3632 3815 8.896744 CCAAACAAGTTCATACATGTATCTCAT 58.103 33.333 15.60 0.31 35.31 2.90
3639 3822 5.619757 CGATGCCAAACAAGTTCATACATGT 60.620 40.000 2.69 2.69 37.78 3.21
3645 3828 2.238521 ACCGATGCCAAACAAGTTCAT 58.761 42.857 0.00 0.00 0.00 2.57
3659 3842 2.878406 GTGGGGAAATCACATACCGATG 59.122 50.000 0.00 0.00 39.16 3.84
3665 3848 0.548989 CGGGGTGGGGAAATCACATA 59.451 55.000 0.00 0.00 36.90 2.29
3666 3849 1.306296 CGGGGTGGGGAAATCACAT 59.694 57.895 0.00 0.00 36.90 3.21
3676 3859 1.901464 CTGAACCAAACGGGGTGGG 60.901 63.158 6.29 0.00 41.32 4.61
3680 3863 1.107945 ACAAACTGAACCAAACGGGG 58.892 50.000 0.00 0.00 42.91 5.73
3681 3864 2.951457 AACAAACTGAACCAAACGGG 57.049 45.000 0.00 0.00 44.81 5.28
3708 3891 3.450457 TGGAACCAACAGATTTTTGCACT 59.550 39.130 0.00 0.00 0.00 4.40
3709 3892 3.555547 GTGGAACCAACAGATTTTTGCAC 59.444 43.478 0.00 0.00 32.47 4.57
3729 3912 5.356882 ACAACATCTTCAAATACGTGGTG 57.643 39.130 0.00 0.00 0.00 4.17
3732 3915 8.775220 TTTGTAACAACATCTTCAAATACGTG 57.225 30.769 0.00 0.00 0.00 4.49
3737 3920 9.107177 TGCAAATTTGTAACAACATCTTCAAAT 57.893 25.926 19.03 0.00 37.18 2.32
3738 3921 8.386606 GTGCAAATTTGTAACAACATCTTCAAA 58.613 29.630 19.03 0.00 0.00 2.69
3748 3931 3.462021 GCCTGGTGCAAATTTGTAACAA 58.538 40.909 24.33 13.70 39.94 2.83
3762 3945 1.078497 TTCATACGCAGGCCTGGTG 60.078 57.895 33.46 21.84 0.00 4.17
3764 3947 2.173669 CGTTCATACGCAGGCCTGG 61.174 63.158 33.46 24.43 41.41 4.45
3771 3954 0.172578 CTGGACTCCGTTCATACGCA 59.827 55.000 0.00 0.00 46.27 5.24
3782 3965 5.070685 ACATTTTGTTTACTCCTGGACTCC 58.929 41.667 0.00 0.00 0.00 3.85
3784 3967 7.074653 TCTACATTTTGTTTACTCCTGGACT 57.925 36.000 0.00 0.00 0.00 3.85
3794 3977 6.007076 TGCAGTGGGATCTACATTTTGTTTA 58.993 36.000 0.00 0.00 0.00 2.01
3853 4046 4.345859 ACTCACGGTACATCCTCAAAAA 57.654 40.909 0.00 0.00 0.00 1.94
3854 4047 4.345859 AACTCACGGTACATCCTCAAAA 57.654 40.909 0.00 0.00 0.00 2.44
3855 4048 4.281435 TGTAACTCACGGTACATCCTCAAA 59.719 41.667 0.00 0.00 0.00 2.69
3856 4049 3.827876 TGTAACTCACGGTACATCCTCAA 59.172 43.478 0.00 0.00 0.00 3.02
3857 4050 3.423749 TGTAACTCACGGTACATCCTCA 58.576 45.455 0.00 0.00 0.00 3.86
3858 4051 4.097437 TCATGTAACTCACGGTACATCCTC 59.903 45.833 0.33 0.00 31.51 3.71
3859 4052 4.021229 TCATGTAACTCACGGTACATCCT 58.979 43.478 0.33 0.00 31.51 3.24
3860 4053 4.380841 TCATGTAACTCACGGTACATCC 57.619 45.455 0.33 0.00 31.51 3.51
3861 4054 4.675565 CGATCATGTAACTCACGGTACATC 59.324 45.833 0.33 0.00 31.51 3.06
3862 4055 4.337274 TCGATCATGTAACTCACGGTACAT 59.663 41.667 0.00 0.00 33.87 2.29
3863 4056 3.690628 TCGATCATGTAACTCACGGTACA 59.309 43.478 0.00 0.00 0.00 2.90
3864 4057 4.033684 GTCGATCATGTAACTCACGGTAC 58.966 47.826 0.00 0.00 0.00 3.34
3865 4058 3.943381 AGTCGATCATGTAACTCACGGTA 59.057 43.478 0.00 0.00 0.00 4.02
3866 4059 2.753452 AGTCGATCATGTAACTCACGGT 59.247 45.455 0.00 0.00 0.00 4.83
3867 4060 3.108881 CAGTCGATCATGTAACTCACGG 58.891 50.000 0.00 0.00 0.00 4.94
3868 4061 2.531912 GCAGTCGATCATGTAACTCACG 59.468 50.000 0.00 0.00 0.00 4.35
3871 4064 3.304559 GTGTGCAGTCGATCATGTAACTC 59.695 47.826 0.00 0.00 0.00 3.01
3879 4072 1.444383 GAGCGTGTGCAGTCGATCA 60.444 57.895 19.04 0.00 46.23 2.92
3880 4073 0.734253 AAGAGCGTGTGCAGTCGATC 60.734 55.000 17.13 17.13 46.23 3.69
3896 4089 1.829849 CCCAGAGACTGATGCTCAAGA 59.170 52.381 0.00 0.00 34.85 3.02
3902 4095 1.153208 CCAGCCCAGAGACTGATGC 60.153 63.158 0.00 0.00 35.90 3.91
3903 4096 1.153208 GCCAGCCCAGAGACTGATG 60.153 63.158 0.00 0.00 35.90 3.07
3905 4098 3.385384 CGCCAGCCCAGAGACTGA 61.385 66.667 0.00 0.00 35.90 3.41
3908 4101 2.125350 CTTCGCCAGCCCAGAGAC 60.125 66.667 0.00 0.00 0.00 3.36
3909 4102 2.604686 ACTTCGCCAGCCCAGAGA 60.605 61.111 0.00 0.00 0.00 3.10
3910 4103 2.435586 CACTTCGCCAGCCCAGAG 60.436 66.667 0.00 0.00 0.00 3.35
3911 4104 4.020617 CCACTTCGCCAGCCCAGA 62.021 66.667 0.00 0.00 0.00 3.86
3913 4106 4.641645 CACCACTTCGCCAGCCCA 62.642 66.667 0.00 0.00 0.00 5.36
3917 4110 3.730761 GCTGCACCACTTCGCCAG 61.731 66.667 0.00 0.00 0.00 4.85
3952 4164 2.416107 TTTGGTGGGAGCAGCAGGAG 62.416 60.000 0.00 0.00 33.88 3.69
3960 4172 1.301677 CGAGAAGCTTTGGTGGGAGC 61.302 60.000 0.00 0.00 39.17 4.70
3969 4181 4.223032 TGGAGGAACTAATCGAGAAGCTTT 59.777 41.667 0.00 0.00 41.55 3.51
3979 4191 3.118261 TGACCATGCTGGAGGAACTAATC 60.118 47.826 8.91 0.00 41.55 1.75
4001 4213 0.419459 AGGGAGAAGGTGGAGATGGT 59.581 55.000 0.00 0.00 0.00 3.55
4011 4223 3.776616 CTAAGCAGCAGGGAGAAGG 57.223 57.895 0.00 0.00 0.00 3.46
4047 4259 4.680237 TCTGCCACGGGAGCAACG 62.680 66.667 0.00 0.00 40.35 4.10
4048 4260 2.743928 CTCTGCCACGGGAGCAAC 60.744 66.667 0.00 0.00 40.35 4.17
4116 4328 1.781025 TTCAAGCACGCCAAACTCGG 61.781 55.000 0.00 0.00 0.00 4.63
4117 4329 0.657368 GTTCAAGCACGCCAAACTCG 60.657 55.000 0.00 0.00 0.00 4.18
4118 4330 0.380378 TGTTCAAGCACGCCAAACTC 59.620 50.000 0.00 0.00 0.00 3.01
4119 4331 0.381801 CTGTTCAAGCACGCCAAACT 59.618 50.000 0.00 0.00 0.00 2.66
4120 4332 0.594796 CCTGTTCAAGCACGCCAAAC 60.595 55.000 0.00 0.00 0.00 2.93
4121 4333 0.749818 TCCTGTTCAAGCACGCCAAA 60.750 50.000 0.00 0.00 0.00 3.28
4122 4334 0.749818 TTCCTGTTCAAGCACGCCAA 60.750 50.000 0.00 0.00 0.00 4.52
4123 4335 1.153066 TTCCTGTTCAAGCACGCCA 60.153 52.632 0.00 0.00 0.00 5.69
4124 4336 1.282875 GTTCCTGTTCAAGCACGCC 59.717 57.895 0.00 0.00 0.00 5.68
4125 4337 0.317020 GTGTTCCTGTTCAAGCACGC 60.317 55.000 0.00 0.00 0.00 5.34
4126 4338 1.003545 CAGTGTTCCTGTTCAAGCACG 60.004 52.381 0.00 0.00 36.37 5.34
4127 4339 1.268743 GCAGTGTTCCTGTTCAAGCAC 60.269 52.381 0.00 0.00 43.55 4.40
4128 4340 1.024271 GCAGTGTTCCTGTTCAAGCA 58.976 50.000 0.00 0.00 43.55 3.91
4129 4341 1.024271 TGCAGTGTTCCTGTTCAAGC 58.976 50.000 0.00 0.00 43.55 4.01
4130 4342 2.016318 TGTGCAGTGTTCCTGTTCAAG 58.984 47.619 0.00 0.00 43.55 3.02
4131 4343 2.016318 CTGTGCAGTGTTCCTGTTCAA 58.984 47.619 0.00 0.00 43.55 2.69
4132 4344 1.209261 TCTGTGCAGTGTTCCTGTTCA 59.791 47.619 0.00 0.00 43.55 3.18
4133 4345 1.953559 TCTGTGCAGTGTTCCTGTTC 58.046 50.000 0.00 0.00 43.55 3.18
4134 4346 2.418368 TTCTGTGCAGTGTTCCTGTT 57.582 45.000 0.00 0.00 43.55 3.16
4135 4347 2.092968 TCTTTCTGTGCAGTGTTCCTGT 60.093 45.455 0.00 0.00 43.55 4.00
4136 4348 2.547211 CTCTTTCTGTGCAGTGTTCCTG 59.453 50.000 0.00 0.00 44.53 3.86
4137 4349 2.435805 TCTCTTTCTGTGCAGTGTTCCT 59.564 45.455 0.00 0.00 0.00 3.36
4138 4350 2.545946 GTCTCTTTCTGTGCAGTGTTCC 59.454 50.000 0.00 0.00 0.00 3.62
4139 4351 3.462021 AGTCTCTTTCTGTGCAGTGTTC 58.538 45.455 0.00 0.00 0.00 3.18
4140 4352 3.462021 GAGTCTCTTTCTGTGCAGTGTT 58.538 45.455 0.00 0.00 0.00 3.32
4141 4353 2.544694 CGAGTCTCTTTCTGTGCAGTGT 60.545 50.000 0.00 0.00 0.00 3.55
4142 4354 2.057316 CGAGTCTCTTTCTGTGCAGTG 58.943 52.381 0.00 0.00 0.00 3.66
4143 4355 1.683917 ACGAGTCTCTTTCTGTGCAGT 59.316 47.619 0.00 0.00 0.00 4.40
4144 4356 2.430546 ACGAGTCTCTTTCTGTGCAG 57.569 50.000 0.00 0.00 0.00 4.41
4145 4357 2.890808 AACGAGTCTCTTTCTGTGCA 57.109 45.000 0.00 0.00 0.00 4.57
4146 4358 4.034048 TGAAAAACGAGTCTCTTTCTGTGC 59.966 41.667 12.00 0.00 0.00 4.57
4147 4359 5.277058 CCTGAAAAACGAGTCTCTTTCTGTG 60.277 44.000 12.00 5.22 0.00 3.66
4148 4360 4.811557 CCTGAAAAACGAGTCTCTTTCTGT 59.188 41.667 12.00 0.00 0.00 3.41
4149 4361 5.050490 TCCTGAAAAACGAGTCTCTTTCTG 58.950 41.667 12.00 11.23 0.00 3.02
4150 4362 5.277857 TCCTGAAAAACGAGTCTCTTTCT 57.722 39.130 12.00 0.00 0.00 2.52
4151 4363 5.524281 ACTTCCTGAAAAACGAGTCTCTTTC 59.476 40.000 0.00 2.63 0.00 2.62
4152 4364 5.429130 ACTTCCTGAAAAACGAGTCTCTTT 58.571 37.500 0.00 0.00 0.00 2.52
4153 4365 5.024785 ACTTCCTGAAAAACGAGTCTCTT 57.975 39.130 0.00 0.00 0.00 2.85
4154 4366 4.674281 ACTTCCTGAAAAACGAGTCTCT 57.326 40.909 0.00 0.00 0.00 3.10
4155 4367 4.024809 CCAACTTCCTGAAAAACGAGTCTC 60.025 45.833 0.00 0.00 0.00 3.36
4156 4368 3.877508 CCAACTTCCTGAAAAACGAGTCT 59.122 43.478 0.00 0.00 0.00 3.24
4157 4369 3.875134 TCCAACTTCCTGAAAAACGAGTC 59.125 43.478 0.00 0.00 0.00 3.36
4158 4370 3.881220 TCCAACTTCCTGAAAAACGAGT 58.119 40.909 0.00 0.00 0.00 4.18
4159 4371 5.701290 AGTATCCAACTTCCTGAAAAACGAG 59.299 40.000 0.00 0.00 33.35 4.18
4160 4372 5.617252 AGTATCCAACTTCCTGAAAAACGA 58.383 37.500 0.00 0.00 33.35 3.85
4161 4373 5.928153 GAGTATCCAACTTCCTGAAAAACG 58.072 41.667 0.00 0.00 39.07 3.60
4178 4390 9.857957 CTTATATTTAGGAACGAAGGGAGTATC 57.142 37.037 0.00 0.00 0.00 2.24
4179 4391 9.377238 ACTTATATTTAGGAACGAAGGGAGTAT 57.623 33.333 0.00 0.00 0.00 2.12
4180 4392 8.773033 ACTTATATTTAGGAACGAAGGGAGTA 57.227 34.615 0.00 0.00 0.00 2.59
4181 4393 7.564292 AGACTTATATTTAGGAACGAAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
4182 4394 7.953752 AGACTTATATTTAGGAACGAAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
4183 4395 7.909485 AGACTTATATTTAGGAACGAAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
4184 4396 8.959705 AAAGACTTATATTTAGGAACGAAGGG 57.040 34.615 0.00 0.00 0.00 3.95
4212 4424 9.570468 TCGTATGTAGTCTATAGTGGAATCTTT 57.430 33.333 0.00 0.00 0.00 2.52
4213 4425 9.570468 TTCGTATGTAGTCTATAGTGGAATCTT 57.430 33.333 0.00 0.00 0.00 2.40
4214 4426 9.221933 CTTCGTATGTAGTCTATAGTGGAATCT 57.778 37.037 0.00 0.00 0.00 2.40
4215 4427 7.964011 GCTTCGTATGTAGTCTATAGTGGAATC 59.036 40.741 0.00 0.00 0.00 2.52
4216 4428 7.447545 TGCTTCGTATGTAGTCTATAGTGGAAT 59.552 37.037 0.00 0.00 0.00 3.01
4217 4429 6.769341 TGCTTCGTATGTAGTCTATAGTGGAA 59.231 38.462 0.00 0.00 0.00 3.53
4218 4430 6.293698 TGCTTCGTATGTAGTCTATAGTGGA 58.706 40.000 0.00 0.00 0.00 4.02
4219 4431 6.555812 TGCTTCGTATGTAGTCTATAGTGG 57.444 41.667 0.00 0.00 0.00 4.00
4220 4432 8.851960 TTTTGCTTCGTATGTAGTCTATAGTG 57.148 34.615 0.00 0.00 0.00 2.74
4221 4433 9.464714 CATTTTGCTTCGTATGTAGTCTATAGT 57.535 33.333 0.00 0.00 0.00 2.12
4222 4434 9.678941 TCATTTTGCTTCGTATGTAGTCTATAG 57.321 33.333 0.00 0.00 0.00 1.31
4223 4435 9.678941 CTCATTTTGCTTCGTATGTAGTCTATA 57.321 33.333 0.00 0.00 0.00 1.31
4224 4436 8.198109 ACTCATTTTGCTTCGTATGTAGTCTAT 58.802 33.333 0.00 0.00 0.00 1.98
4225 4437 7.488150 CACTCATTTTGCTTCGTATGTAGTCTA 59.512 37.037 0.00 0.00 0.00 2.59
4226 4438 6.311445 CACTCATTTTGCTTCGTATGTAGTCT 59.689 38.462 0.00 0.00 0.00 3.24
4227 4439 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
4228 4440 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
4229 4441 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
4230 4442 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
4231 4443 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
4232 4444 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
4233 4445 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
4234 4446 9.031360 GTATAGATTCACTCATTTTGCTTCGTA 57.969 33.333 0.00 0.00 0.00 3.43
4235 4447 6.992063 ATAGATTCACTCATTTTGCTTCGT 57.008 33.333 0.00 0.00 0.00 3.85
4236 4448 8.136057 AGTATAGATTCACTCATTTTGCTTCG 57.864 34.615 0.00 0.00 0.00 3.79
4264 4476 8.506168 ACATTCGGATGTATGTAGACATTTTT 57.494 30.769 7.81 0.00 44.51 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.