Multiple sequence alignment - TraesCS6A01G318000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G318000 chr6A 100.000 2989 0 0 1 2989 554305357 554302369 0.000000e+00 5520.0
1 TraesCS6A01G318000 chr6A 79.432 1478 251 38 1019 2478 553927432 553925990 0.000000e+00 996.0
2 TraesCS6A01G318000 chr6A 88.215 297 22 3 2572 2865 553943268 553942982 2.850000e-90 342.0
3 TraesCS6A01G318000 chr6A 74.778 563 119 19 1033 1585 592817052 592817601 6.440000e-57 231.0
4 TraesCS6A01G318000 chr6D 91.506 2496 140 27 237 2708 408215647 408213200 0.000000e+00 3369.0
5 TraesCS6A01G318000 chr6D 80.014 1456 239 40 1042 2478 408184684 408183262 0.000000e+00 1029.0
6 TraesCS6A01G318000 chr6D 91.093 247 20 1 1 245 408215828 408215582 1.720000e-87 333.0
7 TraesCS6A01G318000 chr6D 91.667 108 6 1 2758 2865 408213212 408213108 2.400000e-31 147.0
8 TraesCS6A01G318000 chr6B 90.804 2501 159 40 237 2708 612859593 612857135 0.000000e+00 3278.0
9 TraesCS6A01G318000 chr6B 79.823 1472 257 32 1026 2478 612849440 612847990 0.000000e+00 1037.0
10 TraesCS6A01G318000 chr6B 91.129 248 19 3 1 245 612859775 612859528 1.720000e-87 333.0
11 TraesCS6A01G318000 chr6B 85.106 94 9 4 1486 1578 16241805 16241716 1.140000e-14 91.6
12 TraesCS6A01G318000 chr2B 78.643 398 65 17 1149 1536 481900628 481900241 2.300000e-61 246.0
13 TraesCS6A01G318000 chr2D 77.045 440 88 12 1151 1585 338330404 338330835 1.070000e-59 241.0
14 TraesCS6A01G318000 chr2A 77.098 441 86 13 1151 1585 448293506 448293937 1.070000e-59 241.0
15 TraesCS6A01G318000 chr4A 83.333 144 22 2 2335 2478 710677220 710677361 6.720000e-27 132.0
16 TraesCS6A01G318000 chr1B 78.814 118 16 5 2875 2989 658467356 658467467 1.490000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G318000 chr6A 554302369 554305357 2988 True 5520.0 5520 100.0000 1 2989 1 chr6A.!!$R3 2988
1 TraesCS6A01G318000 chr6A 553925990 553927432 1442 True 996.0 996 79.4320 1019 2478 1 chr6A.!!$R1 1459
2 TraesCS6A01G318000 chr6A 592817052 592817601 549 False 231.0 231 74.7780 1033 1585 1 chr6A.!!$F1 552
3 TraesCS6A01G318000 chr6D 408213108 408215828 2720 True 1283.0 3369 91.4220 1 2865 3 chr6D.!!$R2 2864
4 TraesCS6A01G318000 chr6D 408183262 408184684 1422 True 1029.0 1029 80.0140 1042 2478 1 chr6D.!!$R1 1436
5 TraesCS6A01G318000 chr6B 612857135 612859775 2640 True 1805.5 3278 90.9665 1 2708 2 chr6B.!!$R3 2707
6 TraesCS6A01G318000 chr6B 612847990 612849440 1450 True 1037.0 1037 79.8230 1026 2478 1 chr6B.!!$R2 1452

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
245 247 0.179145 CTTGCTGCTGCTATGTTGCC 60.179 55.0 17.00 0.00 40.48 4.52 F
1371 1414 0.388134 CCTTCGTCTCGGCGAGAAAA 60.388 55.0 38.03 30.54 40.59 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1503 1546 1.065401 TCGGTCGTGTACGTCAACTTT 59.935 47.619 4.2 0.0 40.80 2.66 R
2902 2991 0.321653 ATTTGGAGCGGACCTCACAC 60.322 55.000 0.0 0.0 42.62 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 1.736681 GCAATCTCAAGGCAGTCTGAC 59.263 52.381 3.32 0.00 0.00 3.51
103 104 3.220110 ACGATGTATCCGGTATGTCACT 58.780 45.455 0.00 0.00 0.00 3.41
105 106 3.366070 CGATGTATCCGGTATGTCACTCC 60.366 52.174 0.00 0.00 0.00 3.85
117 118 3.924114 TGTCACTCCCAGTTTTCAGAA 57.076 42.857 0.00 0.00 0.00 3.02
119 120 2.544267 GTCACTCCCAGTTTTCAGAACG 59.456 50.000 0.00 0.00 0.00 3.95
179 181 9.122779 TCATGTTATTCATATGTCAAATCAGCA 57.877 29.630 1.90 0.00 34.67 4.41
189 191 8.618677 CATATGTCAAATCAGCAACTATGTTCT 58.381 33.333 0.00 0.00 0.00 3.01
190 192 9.836864 ATATGTCAAATCAGCAACTATGTTCTA 57.163 29.630 0.00 0.00 0.00 2.10
196 198 9.713740 CAAATCAGCAACTATGTTCTAATCTTC 57.286 33.333 0.00 0.00 0.00 2.87
225 227 8.998377 TGATCGAACTTTGAAATAAACTCATGA 58.002 29.630 0.00 0.00 0.00 3.07
229 231 8.895845 CGAACTTTGAAATAAACTCATGACTTG 58.104 33.333 0.00 0.00 0.00 3.16
238 240 1.277273 ACTCATGACTTGCTGCTGCTA 59.723 47.619 17.00 8.35 40.48 3.49
239 241 2.093075 ACTCATGACTTGCTGCTGCTAT 60.093 45.455 17.00 1.91 40.48 2.97
240 242 2.285977 TCATGACTTGCTGCTGCTATG 58.714 47.619 17.00 12.26 40.48 2.23
241 243 2.014857 CATGACTTGCTGCTGCTATGT 58.985 47.619 17.00 11.86 40.48 2.29
242 244 2.189594 TGACTTGCTGCTGCTATGTT 57.810 45.000 17.00 0.00 40.48 2.71
243 245 1.808343 TGACTTGCTGCTGCTATGTTG 59.192 47.619 17.00 0.16 40.48 3.33
244 246 0.524862 ACTTGCTGCTGCTATGTTGC 59.475 50.000 17.00 0.00 40.48 4.17
245 247 0.179145 CTTGCTGCTGCTATGTTGCC 60.179 55.000 17.00 0.00 40.48 4.52
246 248 0.894642 TTGCTGCTGCTATGTTGCCA 60.895 50.000 17.00 0.00 40.48 4.92
247 249 0.681887 TGCTGCTGCTATGTTGCCAT 60.682 50.000 17.00 0.00 40.48 4.40
248 250 1.311859 GCTGCTGCTATGTTGCCATA 58.688 50.000 8.53 0.00 36.03 2.74
249 251 1.884579 GCTGCTGCTATGTTGCCATAT 59.115 47.619 8.53 0.00 33.18 1.78
250 252 2.295349 GCTGCTGCTATGTTGCCATATT 59.705 45.455 8.53 0.00 33.18 1.28
251 253 3.611057 GCTGCTGCTATGTTGCCATATTC 60.611 47.826 8.53 0.00 33.18 1.75
252 254 3.819337 CTGCTGCTATGTTGCCATATTCT 59.181 43.478 0.00 0.00 33.18 2.40
253 255 4.209538 TGCTGCTATGTTGCCATATTCTT 58.790 39.130 0.00 0.00 33.18 2.52
254 256 4.646040 TGCTGCTATGTTGCCATATTCTTT 59.354 37.500 0.00 0.00 33.18 2.52
255 257 4.980434 GCTGCTATGTTGCCATATTCTTTG 59.020 41.667 0.00 0.00 33.18 2.77
256 258 5.221106 GCTGCTATGTTGCCATATTCTTTGA 60.221 40.000 0.00 0.00 33.18 2.69
257 259 6.516194 GCTGCTATGTTGCCATATTCTTTGAT 60.516 38.462 0.00 0.00 33.18 2.57
258 260 6.973843 TGCTATGTTGCCATATTCTTTGATC 58.026 36.000 0.00 0.00 33.18 2.92
259 261 6.546772 TGCTATGTTGCCATATTCTTTGATCA 59.453 34.615 0.00 0.00 33.18 2.92
260 262 7.068470 TGCTATGTTGCCATATTCTTTGATCAA 59.932 33.333 3.38 3.38 33.18 2.57
261 263 7.922278 GCTATGTTGCCATATTCTTTGATCAAA 59.078 33.333 19.45 19.45 33.18 2.69
262 264 9.241317 CTATGTTGCCATATTCTTTGATCAAAC 57.759 33.333 16.91 5.60 33.18 2.93
263 265 7.230849 TGTTGCCATATTCTTTGATCAAACT 57.769 32.000 16.91 7.45 0.00 2.66
264 266 7.669427 TGTTGCCATATTCTTTGATCAAACTT 58.331 30.769 16.91 7.28 0.00 2.66
265 267 8.149647 TGTTGCCATATTCTTTGATCAAACTTT 58.850 29.630 16.91 6.95 0.00 2.66
266 268 8.437742 GTTGCCATATTCTTTGATCAAACTTTG 58.562 33.333 16.91 7.71 0.00 2.77
267 269 6.591062 TGCCATATTCTTTGATCAAACTTTGC 59.409 34.615 16.91 12.71 0.00 3.68
268 270 6.591062 GCCATATTCTTTGATCAAACTTTGCA 59.409 34.615 16.91 0.00 0.00 4.08
269 271 7.412237 GCCATATTCTTTGATCAAACTTTGCAC 60.412 37.037 16.91 0.71 0.00 4.57
270 272 7.063780 CCATATTCTTTGATCAAACTTTGCACC 59.936 37.037 16.91 0.00 0.00 5.01
271 273 4.998671 TCTTTGATCAAACTTTGCACCA 57.001 36.364 16.91 0.00 0.00 4.17
272 274 5.336150 TCTTTGATCAAACTTTGCACCAA 57.664 34.783 16.91 0.00 0.00 3.67
273 275 5.728471 TCTTTGATCAAACTTTGCACCAAA 58.272 33.333 16.91 6.25 0.00 3.28
274 276 5.580297 TCTTTGATCAAACTTTGCACCAAAC 59.420 36.000 16.91 0.00 0.00 2.93
275 277 4.734398 TGATCAAACTTTGCACCAAACT 57.266 36.364 0.00 0.00 0.00 2.66
276 278 4.681744 TGATCAAACTTTGCACCAAACTC 58.318 39.130 0.00 0.00 0.00 3.01
277 279 4.159321 TGATCAAACTTTGCACCAAACTCA 59.841 37.500 0.00 0.00 0.00 3.41
278 280 4.734398 TCAAACTTTGCACCAAACTCAT 57.266 36.364 0.00 0.00 0.00 2.90
279 281 4.431809 TCAAACTTTGCACCAAACTCATG 58.568 39.130 0.00 0.00 0.00 3.07
280 282 2.514205 ACTTTGCACCAAACTCATGC 57.486 45.000 0.00 0.00 39.88 4.06
281 283 1.069049 ACTTTGCACCAAACTCATGCC 59.931 47.619 0.00 0.00 38.63 4.40
282 284 1.342174 CTTTGCACCAAACTCATGCCT 59.658 47.619 0.00 0.00 38.63 4.75
283 285 1.412079 TTGCACCAAACTCATGCCTT 58.588 45.000 0.00 0.00 38.63 4.35
284 286 1.412079 TGCACCAAACTCATGCCTTT 58.588 45.000 0.00 0.00 38.63 3.11
285 287 1.340889 TGCACCAAACTCATGCCTTTC 59.659 47.619 0.00 0.00 38.63 2.62
286 288 1.615392 GCACCAAACTCATGCCTTTCT 59.385 47.619 0.00 0.00 33.06 2.52
287 289 2.608752 GCACCAAACTCATGCCTTTCTG 60.609 50.000 0.00 0.00 33.06 3.02
288 290 1.615392 ACCAAACTCATGCCTTTCTGC 59.385 47.619 0.00 0.00 0.00 4.26
289 291 1.891150 CCAAACTCATGCCTTTCTGCT 59.109 47.619 0.00 0.00 0.00 4.24
290 292 2.352421 CCAAACTCATGCCTTTCTGCTG 60.352 50.000 0.00 0.00 0.00 4.41
291 293 2.555325 CAAACTCATGCCTTTCTGCTGA 59.445 45.455 0.00 0.00 0.00 4.26
292 294 1.818642 ACTCATGCCTTTCTGCTGAC 58.181 50.000 0.00 0.00 0.00 3.51
298 300 2.019249 TGCCTTTCTGCTGACATATGC 58.981 47.619 1.58 0.00 0.00 3.14
329 331 4.588951 TCACAACCAACTCAGACAGTATCT 59.411 41.667 0.00 0.00 38.66 1.98
423 425 1.612156 CTCGAACTGACTCGCTGAAG 58.388 55.000 0.00 0.00 38.73 3.02
434 436 2.158957 ACTCGCTGAAGTGAAAACTCCA 60.159 45.455 0.00 0.00 33.75 3.86
493 495 1.270625 TGGTTCGCAAAGGAGTACCAG 60.271 52.381 0.00 0.00 38.86 4.00
584 587 4.970662 TCCTATTTCTGCACTGCATTTC 57.029 40.909 3.64 0.00 38.13 2.17
616 619 3.364964 CCCATTGTACTGCGAAACTGAAC 60.365 47.826 0.00 0.00 0.00 3.18
657 660 0.529992 CGCCAGAATAAGTCCCGGAC 60.530 60.000 9.81 9.81 0.00 4.79
691 694 5.178067 GCTAGTAGTCGTCTTCTCTATGTCC 59.822 48.000 0.00 0.00 0.00 4.02
747 758 6.513556 CGACACTCGATTGTTACAGGATAGAT 60.514 42.308 9.99 0.00 43.74 1.98
778 790 3.759581 TCGTAGGACTGGTGAAACTACT 58.240 45.455 0.00 0.00 36.74 2.57
831 874 5.122239 TGCATAGTTTGTCTTGCATACTGTC 59.878 40.000 0.00 0.00 39.23 3.51
884 927 6.377146 GTGGGAAATGGTTACATCATACTGTT 59.623 38.462 0.00 0.00 35.94 3.16
911 954 3.498481 CCAACCCCATATACCCATCACAG 60.498 52.174 0.00 0.00 0.00 3.66
956 999 4.165779 AGACAACAACGTTTTCAGCTTTG 58.834 39.130 0.00 0.00 0.00 2.77
961 1004 3.181500 ACAACGTTTTCAGCTTTGAGGAC 60.181 43.478 0.00 0.00 0.00 3.85
1137 1180 4.785453 GCCACCTCCTCCCGCTTG 62.785 72.222 0.00 0.00 0.00 4.01
1140 1183 2.203788 ACCTCCTCCCGCTTGACA 60.204 61.111 0.00 0.00 0.00 3.58
1371 1414 0.388134 CCTTCGTCTCGGCGAGAAAA 60.388 55.000 38.03 30.54 40.59 2.29
1503 1546 1.746239 CATGACGGTGATGCTGCCA 60.746 57.895 0.00 0.00 0.00 4.92
1527 1570 2.670934 ACGTACACGACCGAGCCT 60.671 61.111 9.04 0.00 43.02 4.58
1542 1585 4.355720 CCTGGCTGCTTCTGGGCA 62.356 66.667 0.00 0.00 40.15 5.36
1794 1840 4.796231 AGCATGACGTCGTCCCGC 62.796 66.667 22.05 21.99 0.00 6.13
1909 1955 3.002862 CAGGTAGCTCTCATCTACGACAC 59.997 52.174 0.00 0.00 37.79 3.67
1910 1956 2.943690 GGTAGCTCTCATCTACGACACA 59.056 50.000 0.00 0.00 37.79 3.72
1926 1972 3.000623 CGACACATGCAGCACAGTTATAG 59.999 47.826 0.00 0.00 0.00 1.31
1927 1973 3.935203 GACACATGCAGCACAGTTATAGT 59.065 43.478 0.00 0.00 0.00 2.12
1928 1974 5.084818 ACACATGCAGCACAGTTATAGTA 57.915 39.130 0.00 0.00 0.00 1.82
1929 1975 4.870426 ACACATGCAGCACAGTTATAGTAC 59.130 41.667 0.00 0.00 0.00 2.73
1930 1976 5.111989 CACATGCAGCACAGTTATAGTACT 58.888 41.667 0.00 0.00 0.00 2.73
1931 1977 6.127451 ACACATGCAGCACAGTTATAGTACTA 60.127 38.462 4.77 4.77 0.00 1.82
1948 1994 6.408858 AGTACTAATTTGCAGTCAATCACG 57.591 37.500 0.00 0.00 31.33 4.35
1951 1997 6.795098 ACTAATTTGCAGTCAATCACGTAA 57.205 33.333 0.00 0.00 31.33 3.18
1954 2000 3.469899 TTGCAGTCAATCACGTAATGC 57.530 42.857 0.98 0.98 0.00 3.56
1958 2004 3.002791 CAGTCAATCACGTAATGCCAGT 58.997 45.455 0.00 0.00 0.00 4.00
1960 2006 3.684788 AGTCAATCACGTAATGCCAGTTC 59.315 43.478 0.00 0.00 0.00 3.01
1963 2009 2.779755 TCACGTAATGCCAGTTCCAT 57.220 45.000 0.00 0.00 0.00 3.41
1964 2010 2.355197 TCACGTAATGCCAGTTCCATG 58.645 47.619 0.00 0.00 0.00 3.66
2400 2467 0.971447 AGGTGACGTAGAAGCCCCTC 60.971 60.000 0.00 0.00 0.00 4.30
2498 2565 0.883833 CGGCTCATGGCTGTTTTCTT 59.116 50.000 6.79 0.00 42.08 2.52
2500 2567 2.288395 CGGCTCATGGCTGTTTTCTTTT 60.288 45.455 6.79 0.00 42.08 2.27
2501 2568 3.320626 GGCTCATGGCTGTTTTCTTTTC 58.679 45.455 6.20 0.00 41.46 2.29
2502 2569 3.006217 GGCTCATGGCTGTTTTCTTTTCT 59.994 43.478 6.20 0.00 41.46 2.52
2503 2570 4.502087 GGCTCATGGCTGTTTTCTTTTCTT 60.502 41.667 6.20 0.00 41.46 2.52
2506 2573 3.708563 TGGCTGTTTTCTTTTCTTCGG 57.291 42.857 0.00 0.00 0.00 4.30
2563 2632 2.907917 CCAAACGGCCGGGACAAA 60.908 61.111 31.76 0.00 0.00 2.83
2564 2633 2.642700 CAAACGGCCGGGACAAAG 59.357 61.111 31.76 7.86 0.00 2.77
2565 2634 1.894756 CAAACGGCCGGGACAAAGA 60.895 57.895 31.76 0.00 0.00 2.52
2568 2637 4.778143 CGGCCGGGACAAAGAGGG 62.778 72.222 20.10 0.00 0.00 4.30
2569 2638 3.647771 GGCCGGGACAAAGAGGGT 61.648 66.667 2.18 0.00 0.00 4.34
2570 2639 2.359975 GCCGGGACAAAGAGGGTG 60.360 66.667 2.18 0.00 0.00 4.61
2708 2797 5.473846 TGATACGCCCTTCAAACACATTTTA 59.526 36.000 0.00 0.00 0.00 1.52
2709 2798 4.864704 ACGCCCTTCAAACACATTTTAT 57.135 36.364 0.00 0.00 0.00 1.40
2710 2799 4.805219 ACGCCCTTCAAACACATTTTATC 58.195 39.130 0.00 0.00 0.00 1.75
2711 2800 4.279671 ACGCCCTTCAAACACATTTTATCA 59.720 37.500 0.00 0.00 0.00 2.15
2712 2801 5.047377 ACGCCCTTCAAACACATTTTATCAT 60.047 36.000 0.00 0.00 0.00 2.45
2713 2802 5.868801 CGCCCTTCAAACACATTTTATCATT 59.131 36.000 0.00 0.00 0.00 2.57
2714 2803 6.183360 CGCCCTTCAAACACATTTTATCATTG 60.183 38.462 0.00 0.00 0.00 2.82
2715 2804 6.873076 GCCCTTCAAACACATTTTATCATTGA 59.127 34.615 0.00 0.00 0.00 2.57
2716 2805 7.550196 GCCCTTCAAACACATTTTATCATTGAT 59.450 33.333 4.28 4.28 0.00 2.57
2717 2806 9.439500 CCCTTCAAACACATTTTATCATTGATT 57.561 29.630 4.14 0.00 0.00 2.57
2782 2871 9.584839 GTCAAACACATTTTGAAAAGCATAATC 57.415 29.630 1.12 0.00 39.76 1.75
2787 2876 6.536224 CACATTTTGAAAAGCATAATCCCCTC 59.464 38.462 0.00 0.00 0.00 4.30
2800 2889 6.577239 GCATAATCCCCTCGGAAGATAAAGAT 60.577 42.308 0.00 0.00 43.10 2.40
2805 2894 4.532521 CCCCTCGGAAGATAAAGATATGGT 59.467 45.833 0.00 0.00 40.84 3.55
2845 2934 1.068895 TGCAATTGCCACCAAGAACTG 59.931 47.619 26.94 0.00 41.18 3.16
2846 2935 1.606224 GCAATTGCCACCAAGAACTGG 60.606 52.381 20.06 0.00 42.68 4.00
2865 2954 8.390921 AGAACTGGTATATCAAGAAAAGGGAAA 58.609 33.333 0.00 0.00 0.00 3.13
2866 2955 9.190317 GAACTGGTATATCAAGAAAAGGGAAAT 57.810 33.333 0.00 0.00 0.00 2.17
2867 2956 8.525290 ACTGGTATATCAAGAAAAGGGAAATG 57.475 34.615 0.00 0.00 0.00 2.32
2868 2957 8.116026 ACTGGTATATCAAGAAAAGGGAAATGT 58.884 33.333 0.00 0.00 0.00 2.71
2869 2958 8.893563 TGGTATATCAAGAAAAGGGAAATGTT 57.106 30.769 0.00 0.00 0.00 2.71
2870 2959 9.320295 TGGTATATCAAGAAAAGGGAAATGTTT 57.680 29.630 0.00 0.00 0.00 2.83
2909 2998 6.674066 ACGTTAAATAATTTGGTGTGTGAGG 58.326 36.000 0.00 0.00 0.00 3.86
2910 2999 6.263617 ACGTTAAATAATTTGGTGTGTGAGGT 59.736 34.615 0.00 0.00 0.00 3.85
2911 3000 6.799925 CGTTAAATAATTTGGTGTGTGAGGTC 59.200 38.462 0.00 0.00 0.00 3.85
2912 3001 5.722021 AAATAATTTGGTGTGTGAGGTCC 57.278 39.130 0.00 0.00 0.00 4.46
2913 3002 1.604604 AATTTGGTGTGTGAGGTCCG 58.395 50.000 0.00 0.00 0.00 4.79
2914 3003 0.889186 ATTTGGTGTGTGAGGTCCGC 60.889 55.000 0.00 0.00 0.00 5.54
2915 3004 1.978455 TTTGGTGTGTGAGGTCCGCT 61.978 55.000 0.00 0.00 0.00 5.52
2916 3005 2.048127 GGTGTGTGAGGTCCGCTC 60.048 66.667 0.00 0.00 0.00 5.03
2917 3006 2.048127 GTGTGTGAGGTCCGCTCC 60.048 66.667 0.00 0.00 0.00 4.70
2918 3007 2.523168 TGTGTGAGGTCCGCTCCA 60.523 61.111 0.00 0.00 0.00 3.86
2919 3008 2.137528 TGTGTGAGGTCCGCTCCAA 61.138 57.895 0.00 0.00 0.00 3.53
2920 3009 1.070786 GTGTGAGGTCCGCTCCAAA 59.929 57.895 0.00 0.00 0.00 3.28
2921 3010 0.321653 GTGTGAGGTCCGCTCCAAAT 60.322 55.000 0.00 0.00 0.00 2.32
2922 3011 0.400213 TGTGAGGTCCGCTCCAAATT 59.600 50.000 0.00 0.00 0.00 1.82
2923 3012 1.202879 TGTGAGGTCCGCTCCAAATTT 60.203 47.619 0.00 0.00 0.00 1.82
2924 3013 1.886542 GTGAGGTCCGCTCCAAATTTT 59.113 47.619 0.00 0.00 0.00 1.82
2925 3014 3.078837 GTGAGGTCCGCTCCAAATTTTA 58.921 45.455 0.00 0.00 0.00 1.52
2926 3015 3.694566 GTGAGGTCCGCTCCAAATTTTAT 59.305 43.478 0.00 0.00 0.00 1.40
2927 3016 3.694072 TGAGGTCCGCTCCAAATTTTATG 59.306 43.478 0.00 0.00 0.00 1.90
2928 3017 3.694566 GAGGTCCGCTCCAAATTTTATGT 59.305 43.478 0.00 0.00 0.00 2.29
2929 3018 3.694566 AGGTCCGCTCCAAATTTTATGTC 59.305 43.478 0.00 0.00 0.00 3.06
2930 3019 3.442273 GGTCCGCTCCAAATTTTATGTCA 59.558 43.478 0.00 0.00 0.00 3.58
2931 3020 4.097892 GGTCCGCTCCAAATTTTATGTCAT 59.902 41.667 0.00 0.00 0.00 3.06
2932 3021 5.394115 GGTCCGCTCCAAATTTTATGTCATT 60.394 40.000 0.00 0.00 0.00 2.57
2933 3022 6.099341 GTCCGCTCCAAATTTTATGTCATTT 58.901 36.000 0.00 0.00 0.00 2.32
2934 3023 7.254852 GTCCGCTCCAAATTTTATGTCATTTA 58.745 34.615 0.00 0.00 0.00 1.40
2935 3024 7.432252 GTCCGCTCCAAATTTTATGTCATTTAG 59.568 37.037 0.00 0.00 0.00 1.85
2936 3025 7.338196 TCCGCTCCAAATTTTATGTCATTTAGA 59.662 33.333 0.00 0.00 0.00 2.10
2952 3041 8.964420 GTCATTTAGACATCTGAGTAGCTATC 57.036 38.462 0.00 0.00 46.77 2.08
2953 3042 7.748683 GTCATTTAGACATCTGAGTAGCTATCG 59.251 40.741 0.00 0.00 46.77 2.92
2954 3043 7.661847 TCATTTAGACATCTGAGTAGCTATCGA 59.338 37.037 0.00 0.00 0.00 3.59
2955 3044 6.788684 TTAGACATCTGAGTAGCTATCGAC 57.211 41.667 0.00 0.00 0.00 4.20
2956 3045 4.709250 AGACATCTGAGTAGCTATCGACA 58.291 43.478 0.00 0.00 0.00 4.35
2957 3046 5.126779 AGACATCTGAGTAGCTATCGACAA 58.873 41.667 0.00 0.00 0.00 3.18
2958 3047 5.590663 AGACATCTGAGTAGCTATCGACAAA 59.409 40.000 0.00 0.00 0.00 2.83
2959 3048 6.095580 AGACATCTGAGTAGCTATCGACAAAA 59.904 38.462 0.00 0.00 0.00 2.44
2960 3049 6.631016 ACATCTGAGTAGCTATCGACAAAAA 58.369 36.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.034410 GGAGTCTGAAATTAGGAGGGAGT 58.966 47.826 0.00 0.00 0.00 3.85
83 84 3.366070 GGAGTGACATACCGGATACATCG 60.366 52.174 9.46 0.00 0.00 3.84
103 104 0.181587 TGGCGTTCTGAAAACTGGGA 59.818 50.000 0.00 0.00 0.00 4.37
105 106 2.861462 TTTGGCGTTCTGAAAACTGG 57.139 45.000 0.00 0.00 0.00 4.00
117 118 8.014517 CAGCAAAATGTTTATTTATTTTGGCGT 58.985 29.630 18.44 4.93 46.56 5.68
119 120 9.676195 AACAGCAAAATGTTTATTTATTTTGGC 57.324 25.926 18.44 12.83 46.56 4.52
171 173 9.678260 AGAAGATTAGAACATAGTTGCTGATTT 57.322 29.630 0.00 0.00 0.00 2.17
175 177 8.939929 TCAAAGAAGATTAGAACATAGTTGCTG 58.060 33.333 0.00 0.00 0.00 4.41
196 198 9.663904 TGAGTTTATTTCAAAGTTCGATCAAAG 57.336 29.630 0.00 0.00 0.00 2.77
214 216 3.128242 GCAGCAGCAAGTCATGAGTTTAT 59.872 43.478 13.25 2.31 41.58 1.40
225 227 0.524862 GCAACATAGCAGCAGCAAGT 59.475 50.000 3.17 0.00 45.49 3.16
229 231 3.594568 TGGCAACATAGCAGCAGC 58.405 55.556 0.00 0.00 46.17 5.25
240 242 8.437742 CAAAGTTTGATCAAAGAATATGGCAAC 58.562 33.333 21.05 5.81 0.00 4.17
241 243 7.118101 GCAAAGTTTGATCAAAGAATATGGCAA 59.882 33.333 21.05 0.00 0.00 4.52
242 244 6.591062 GCAAAGTTTGATCAAAGAATATGGCA 59.409 34.615 21.05 0.00 0.00 4.92
243 245 6.591062 TGCAAAGTTTGATCAAAGAATATGGC 59.409 34.615 21.05 16.82 0.00 4.40
244 246 7.063780 GGTGCAAAGTTTGATCAAAGAATATGG 59.936 37.037 21.05 8.51 0.00 2.74
245 247 7.599621 TGGTGCAAAGTTTGATCAAAGAATATG 59.400 33.333 21.05 15.41 0.00 1.78
246 248 7.669427 TGGTGCAAAGTTTGATCAAAGAATAT 58.331 30.769 21.05 3.91 0.00 1.28
247 249 7.048629 TGGTGCAAAGTTTGATCAAAGAATA 57.951 32.000 21.05 3.77 0.00 1.75
248 250 5.916318 TGGTGCAAAGTTTGATCAAAGAAT 58.084 33.333 21.05 7.79 0.00 2.40
249 251 5.336150 TGGTGCAAAGTTTGATCAAAGAA 57.664 34.783 21.05 1.37 0.00 2.52
250 252 4.998671 TGGTGCAAAGTTTGATCAAAGA 57.001 36.364 21.05 0.00 0.00 2.52
251 253 5.581874 AGTTTGGTGCAAAGTTTGATCAAAG 59.418 36.000 21.05 10.56 33.83 2.77
252 254 5.486526 AGTTTGGTGCAAAGTTTGATCAAA 58.513 33.333 19.82 16.91 33.83 2.69
253 255 5.083533 AGTTTGGTGCAAAGTTTGATCAA 57.916 34.783 19.82 14.98 33.83 2.57
254 256 4.159321 TGAGTTTGGTGCAAAGTTTGATCA 59.841 37.500 19.82 10.22 37.16 2.92
255 257 4.681744 TGAGTTTGGTGCAAAGTTTGATC 58.318 39.130 19.82 10.28 37.16 2.92
256 258 4.734398 TGAGTTTGGTGCAAAGTTTGAT 57.266 36.364 19.82 0.00 37.16 2.57
257 259 4.431809 CATGAGTTTGGTGCAAAGTTTGA 58.568 39.130 19.82 1.93 37.16 2.69
258 260 3.001533 GCATGAGTTTGGTGCAAAGTTTG 59.998 43.478 11.41 11.41 37.16 2.93
259 261 3.197265 GCATGAGTTTGGTGCAAAGTTT 58.803 40.909 0.00 0.00 37.16 2.66
260 262 2.483538 GGCATGAGTTTGGTGCAAAGTT 60.484 45.455 0.00 0.00 37.16 2.66
261 263 1.069049 GGCATGAGTTTGGTGCAAAGT 59.931 47.619 0.00 0.00 39.36 2.66
262 264 1.342174 AGGCATGAGTTTGGTGCAAAG 59.658 47.619 0.00 0.00 40.53 2.77
263 265 1.412079 AGGCATGAGTTTGGTGCAAA 58.588 45.000 0.00 0.00 40.53 3.68
264 266 1.412079 AAGGCATGAGTTTGGTGCAA 58.588 45.000 0.00 0.00 40.53 4.08
265 267 1.340889 GAAAGGCATGAGTTTGGTGCA 59.659 47.619 0.00 0.00 40.53 4.57
266 268 1.615392 AGAAAGGCATGAGTTTGGTGC 59.385 47.619 0.00 0.00 38.12 5.01
267 269 2.608752 GCAGAAAGGCATGAGTTTGGTG 60.609 50.000 0.00 0.00 0.00 4.17
268 270 1.615392 GCAGAAAGGCATGAGTTTGGT 59.385 47.619 0.00 0.00 0.00 3.67
269 271 1.891150 AGCAGAAAGGCATGAGTTTGG 59.109 47.619 0.00 0.00 35.83 3.28
270 272 2.555325 TCAGCAGAAAGGCATGAGTTTG 59.445 45.455 0.00 0.00 35.83 2.93
271 273 2.555757 GTCAGCAGAAAGGCATGAGTTT 59.444 45.455 0.00 0.00 35.83 2.66
272 274 2.157738 GTCAGCAGAAAGGCATGAGTT 58.842 47.619 0.00 0.00 35.83 3.01
273 275 1.072806 TGTCAGCAGAAAGGCATGAGT 59.927 47.619 0.00 0.00 35.83 3.41
274 276 1.817357 TGTCAGCAGAAAGGCATGAG 58.183 50.000 0.00 0.00 35.83 2.90
275 277 2.502142 ATGTCAGCAGAAAGGCATGA 57.498 45.000 0.00 0.00 35.83 3.07
276 278 3.550233 GCATATGTCAGCAGAAAGGCATG 60.550 47.826 4.29 0.00 35.83 4.06
277 279 2.621998 GCATATGTCAGCAGAAAGGCAT 59.378 45.455 4.29 0.00 35.83 4.40
278 280 2.019249 GCATATGTCAGCAGAAAGGCA 58.981 47.619 4.29 0.00 35.83 4.75
279 281 2.033049 CAGCATATGTCAGCAGAAAGGC 59.967 50.000 4.29 0.00 0.00 4.35
280 282 2.033049 GCAGCATATGTCAGCAGAAAGG 59.967 50.000 4.29 0.00 0.00 3.11
281 283 2.681344 TGCAGCATATGTCAGCAGAAAG 59.319 45.455 12.65 0.00 0.00 2.62
282 284 2.713877 TGCAGCATATGTCAGCAGAAA 58.286 42.857 12.65 0.00 0.00 2.52
283 285 2.406596 TGCAGCATATGTCAGCAGAA 57.593 45.000 12.65 0.00 0.00 3.02
286 288 0.253894 ACCTGCAGCATATGTCAGCA 59.746 50.000 8.66 14.89 33.98 4.41
287 289 1.332997 GAACCTGCAGCATATGTCAGC 59.667 52.381 8.66 6.87 33.98 4.26
288 290 2.353889 GTGAACCTGCAGCATATGTCAG 59.646 50.000 8.66 9.19 34.65 3.51
289 291 2.290197 TGTGAACCTGCAGCATATGTCA 60.290 45.455 8.66 1.82 0.00 3.58
290 292 2.358957 TGTGAACCTGCAGCATATGTC 58.641 47.619 8.66 0.00 0.00 3.06
291 293 2.489329 GTTGTGAACCTGCAGCATATGT 59.511 45.455 8.66 0.00 0.00 2.29
292 294 3.141002 GTTGTGAACCTGCAGCATATG 57.859 47.619 8.66 0.00 0.00 1.78
329 331 1.055849 TGTTTGTAGCCTCAGCCTCA 58.944 50.000 0.00 0.00 41.25 3.86
423 425 6.760770 TCAAATCATTTTGGTGGAGTTTTCAC 59.239 34.615 0.00 0.00 42.10 3.18
434 436 4.403432 AGATCGGCATCAAATCATTTTGGT 59.597 37.500 0.00 0.00 42.10 3.67
493 495 6.780706 TTTCCAGTCAAGAAACGAGTATTC 57.219 37.500 0.00 0.00 0.00 1.75
552 555 6.376581 AGTGCAGAAATAGGAAAAGAATCAGG 59.623 38.462 0.00 0.00 0.00 3.86
616 619 1.533625 TTCCATTTTCTGGCGTGAGG 58.466 50.000 0.00 0.00 45.52 3.86
709 712 1.788886 GAGTGTCGTACGAACAAACCC 59.211 52.381 21.39 6.18 0.00 4.11
719 722 3.850273 CCTGTAACAATCGAGTGTCGTAC 59.150 47.826 19.93 18.09 41.35 3.67
747 758 5.244402 TCACCAGTCCTACGAAGAACATTTA 59.756 40.000 0.00 0.00 0.00 1.40
778 790 3.979948 TGTCGTTTTCTCGGTGATGTAA 58.020 40.909 0.00 0.00 0.00 2.41
831 874 0.804544 ACCGTTGTGCGTCCATATCG 60.805 55.000 0.00 0.00 39.32 2.92
961 1004 2.190578 GCTTGGAGGGACCGATGG 59.809 66.667 0.00 0.00 42.61 3.51
1008 1051 4.790861 GACGGCGGGACTTCGACC 62.791 72.222 13.24 0.00 34.05 4.79
1503 1546 1.065401 TCGGTCGTGTACGTCAACTTT 59.935 47.619 4.20 0.00 40.80 2.66
1909 1955 7.953158 ATTAGTACTATAACTGTGCTGCATG 57.047 36.000 5.27 4.78 32.86 4.06
1910 1956 8.830580 CAAATTAGTACTATAACTGTGCTGCAT 58.169 33.333 5.27 0.00 32.86 3.96
1926 1972 6.165659 ACGTGATTGACTGCAAATTAGTAC 57.834 37.500 0.00 0.00 37.59 2.73
1927 1973 7.892778 TTACGTGATTGACTGCAAATTAGTA 57.107 32.000 0.00 0.00 37.59 1.82
1928 1974 6.795098 TTACGTGATTGACTGCAAATTAGT 57.205 33.333 0.00 0.00 37.59 2.24
1929 1975 6.195244 GCATTACGTGATTGACTGCAAATTAG 59.805 38.462 0.00 0.00 37.59 1.73
1930 1976 6.027131 GCATTACGTGATTGACTGCAAATTA 58.973 36.000 0.00 0.00 37.59 1.40
1931 1977 4.858692 GCATTACGTGATTGACTGCAAATT 59.141 37.500 0.00 0.00 37.59 1.82
1948 1994 3.088194 CATGCATGGAACTGGCATTAC 57.912 47.619 19.40 0.00 43.74 1.89
1963 2009 4.529219 CCCTACGCGCTCCATGCA 62.529 66.667 5.73 0.00 43.06 3.96
1973 2019 1.889170 GTATACTACCACCCCCTACGC 59.111 57.143 0.00 0.00 0.00 4.42
2355 2422 1.214589 CTCGGAGTACAACCACCGG 59.785 63.158 0.00 0.00 44.57 5.28
2400 2467 3.730761 GCCAAGGTGCTGCACTCG 61.731 66.667 29.54 18.29 34.40 4.18
2493 2560 2.616842 GTCACCAGCCGAAGAAAAGAAA 59.383 45.455 0.00 0.00 0.00 2.52
2498 2565 1.959226 GCGTCACCAGCCGAAGAAA 60.959 57.895 0.00 0.00 0.00 2.52
2500 2567 4.373116 GGCGTCACCAGCCGAAGA 62.373 66.667 0.00 0.00 45.58 2.87
2563 2632 4.594675 ACGGCTCTATATATCACCCTCT 57.405 45.455 0.00 0.00 0.00 3.69
2564 2633 4.951094 AGAACGGCTCTATATATCACCCTC 59.049 45.833 0.00 0.00 30.22 4.30
2565 2634 4.936802 AGAACGGCTCTATATATCACCCT 58.063 43.478 0.00 0.00 30.22 4.34
2568 2637 7.815068 ACAATCAAGAACGGCTCTATATATCAC 59.185 37.037 0.00 0.00 32.46 3.06
2569 2638 7.896811 ACAATCAAGAACGGCTCTATATATCA 58.103 34.615 0.00 0.00 32.46 2.15
2618 2695 9.677567 CGGAATATATTTTACATTTGGTCCAAG 57.322 33.333 4.09 0.00 0.00 3.61
2619 2696 9.191479 ACGGAATATATTTTACATTTGGTCCAA 57.809 29.630 0.00 0.00 0.00 3.53
2620 2697 8.625651 CACGGAATATATTTTACATTTGGTCCA 58.374 33.333 0.00 0.00 0.00 4.02
2630 2707 7.064728 GGATGCTCCTCACGGAATATATTTTAC 59.935 40.741 0.00 0.00 39.29 2.01
2655 2742 5.640218 CATTTAAAAATGCCAGCATACGG 57.360 39.130 5.39 0.00 39.29 4.02
2749 2838 4.753233 TCAAAATGTGTTTGACCAAGTGG 58.247 39.130 0.00 0.00 42.17 4.00
2750 2839 6.718454 TTTCAAAATGTGTTTGACCAAGTG 57.282 33.333 1.12 0.00 38.05 3.16
2751 2840 6.128309 GCTTTTCAAAATGTGTTTGACCAAGT 60.128 34.615 15.06 0.00 38.05 3.16
2752 2841 6.128336 TGCTTTTCAAAATGTGTTTGACCAAG 60.128 34.615 1.12 7.85 38.05 3.61
2753 2842 5.702670 TGCTTTTCAAAATGTGTTTGACCAA 59.297 32.000 1.12 0.00 38.05 3.67
2754 2843 5.240891 TGCTTTTCAAAATGTGTTTGACCA 58.759 33.333 1.12 0.00 38.05 4.02
2755 2844 5.793026 TGCTTTTCAAAATGTGTTTGACC 57.207 34.783 1.12 0.00 38.05 4.02
2756 2845 9.584839 GATTATGCTTTTCAAAATGTGTTTGAC 57.415 29.630 1.12 0.00 38.05 3.18
2757 2846 8.772705 GGATTATGCTTTTCAAAATGTGTTTGA 58.227 29.630 0.00 0.00 36.71 2.69
2758 2847 8.016801 GGGATTATGCTTTTCAAAATGTGTTTG 58.983 33.333 0.00 0.00 0.00 2.93
2759 2848 7.174772 GGGGATTATGCTTTTCAAAATGTGTTT 59.825 33.333 0.00 0.00 0.00 2.83
2760 2849 6.654582 GGGGATTATGCTTTTCAAAATGTGTT 59.345 34.615 0.00 0.00 0.00 3.32
2761 2850 6.013466 AGGGGATTATGCTTTTCAAAATGTGT 60.013 34.615 0.00 0.00 0.00 3.72
2762 2851 6.408869 AGGGGATTATGCTTTTCAAAATGTG 58.591 36.000 0.00 0.00 0.00 3.21
2763 2852 6.625532 AGGGGATTATGCTTTTCAAAATGT 57.374 33.333 0.00 0.00 0.00 2.71
2764 2853 5.750067 CGAGGGGATTATGCTTTTCAAAATG 59.250 40.000 0.00 0.00 0.00 2.32
2765 2854 5.163416 CCGAGGGGATTATGCTTTTCAAAAT 60.163 40.000 0.00 0.00 34.06 1.82
2766 2855 4.159506 CCGAGGGGATTATGCTTTTCAAAA 59.840 41.667 0.00 0.00 34.06 2.44
2767 2856 3.699038 CCGAGGGGATTATGCTTTTCAAA 59.301 43.478 0.00 0.00 34.06 2.69
2768 2857 3.053991 TCCGAGGGGATTATGCTTTTCAA 60.054 43.478 0.00 0.00 37.43 2.69
2769 2858 2.507886 TCCGAGGGGATTATGCTTTTCA 59.492 45.455 0.00 0.00 37.43 2.69
2782 2871 4.532521 ACCATATCTTTATCTTCCGAGGGG 59.467 45.833 0.00 0.00 0.00 4.79
2787 2876 6.055588 ACCACAACCATATCTTTATCTTCCG 58.944 40.000 0.00 0.00 0.00 4.30
2800 2889 7.946381 TTATGCTGAATTAACCACAACCATA 57.054 32.000 0.00 0.00 0.00 2.74
2805 2894 6.278172 TGCATTATGCTGAATTAACCACAA 57.722 33.333 18.44 0.00 45.31 3.33
2883 2972 8.455682 CCTCACACACCAAATTATTTAACGTAT 58.544 33.333 0.00 0.00 0.00 3.06
2884 2973 7.444792 ACCTCACACACCAAATTATTTAACGTA 59.555 33.333 0.00 0.00 0.00 3.57
2885 2974 6.263617 ACCTCACACACCAAATTATTTAACGT 59.736 34.615 0.00 0.00 0.00 3.99
2886 2975 6.674066 ACCTCACACACCAAATTATTTAACG 58.326 36.000 0.00 0.00 0.00 3.18
2887 2976 7.088272 GGACCTCACACACCAAATTATTTAAC 58.912 38.462 0.00 0.00 0.00 2.01
2888 2977 6.072397 CGGACCTCACACACCAAATTATTTAA 60.072 38.462 0.00 0.00 0.00 1.52
2889 2978 5.413213 CGGACCTCACACACCAAATTATTTA 59.587 40.000 0.00 0.00 0.00 1.40
2890 2979 4.217550 CGGACCTCACACACCAAATTATTT 59.782 41.667 0.00 0.00 0.00 1.40
2891 2980 3.756434 CGGACCTCACACACCAAATTATT 59.244 43.478 0.00 0.00 0.00 1.40
2892 2981 3.343617 CGGACCTCACACACCAAATTAT 58.656 45.455 0.00 0.00 0.00 1.28
2893 2982 2.773487 CGGACCTCACACACCAAATTA 58.227 47.619 0.00 0.00 0.00 1.40
2894 2983 1.604604 CGGACCTCACACACCAAATT 58.395 50.000 0.00 0.00 0.00 1.82
2895 2984 0.889186 GCGGACCTCACACACCAAAT 60.889 55.000 0.00 0.00 0.00 2.32
2896 2985 1.525077 GCGGACCTCACACACCAAA 60.525 57.895 0.00 0.00 0.00 3.28
2897 2986 2.110213 GCGGACCTCACACACCAA 59.890 61.111 0.00 0.00 0.00 3.67
2898 2987 2.842462 AGCGGACCTCACACACCA 60.842 61.111 0.00 0.00 0.00 4.17
2899 2988 2.048127 GAGCGGACCTCACACACC 60.048 66.667 0.00 0.00 40.45 4.16
2900 2989 2.048127 GGAGCGGACCTCACACAC 60.048 66.667 0.00 0.00 42.62 3.82
2901 2990 1.691195 TTTGGAGCGGACCTCACACA 61.691 55.000 0.00 0.00 42.62 3.72
2902 2991 0.321653 ATTTGGAGCGGACCTCACAC 60.322 55.000 0.00 0.00 42.62 3.82
2903 2992 0.400213 AATTTGGAGCGGACCTCACA 59.600 50.000 0.00 0.00 42.62 3.58
2904 2993 1.534729 AAATTTGGAGCGGACCTCAC 58.465 50.000 0.00 0.00 42.62 3.51
2905 2994 2.286365 AAAATTTGGAGCGGACCTCA 57.714 45.000 0.00 0.00 42.62 3.86
2906 2995 3.694566 ACATAAAATTTGGAGCGGACCTC 59.305 43.478 0.00 0.00 39.98 3.85
2907 2996 3.694566 GACATAAAATTTGGAGCGGACCT 59.305 43.478 0.00 0.00 0.00 3.85
2908 2997 3.442273 TGACATAAAATTTGGAGCGGACC 59.558 43.478 0.00 0.00 0.00 4.46
2909 2998 4.695217 TGACATAAAATTTGGAGCGGAC 57.305 40.909 0.00 0.00 0.00 4.79
2910 2999 5.913137 AATGACATAAAATTTGGAGCGGA 57.087 34.783 0.00 0.00 0.00 5.54
2911 3000 7.432252 GTCTAAATGACATAAAATTTGGAGCGG 59.568 37.037 0.00 0.00 44.73 5.52
2912 3001 8.327832 GTCTAAATGACATAAAATTTGGAGCG 57.672 34.615 0.00 0.00 44.73 5.03
2927 3016 7.748683 CGATAGCTACTCAGATGTCTAAATGAC 59.251 40.741 0.00 0.00 45.54 3.06
2928 3017 7.661847 TCGATAGCTACTCAGATGTCTAAATGA 59.338 37.037 0.00 0.00 0.00 2.57
2929 3018 7.748683 GTCGATAGCTACTCAGATGTCTAAATG 59.251 40.741 0.00 0.00 0.00 2.32
2930 3019 7.445707 TGTCGATAGCTACTCAGATGTCTAAAT 59.554 37.037 0.00 0.00 0.00 1.40
2931 3020 6.766467 TGTCGATAGCTACTCAGATGTCTAAA 59.234 38.462 0.00 0.00 0.00 1.85
2932 3021 6.289064 TGTCGATAGCTACTCAGATGTCTAA 58.711 40.000 0.00 0.00 0.00 2.10
2933 3022 5.855045 TGTCGATAGCTACTCAGATGTCTA 58.145 41.667 0.00 0.00 0.00 2.59
2934 3023 4.709250 TGTCGATAGCTACTCAGATGTCT 58.291 43.478 0.00 0.00 0.00 3.41
2935 3024 5.425577 TTGTCGATAGCTACTCAGATGTC 57.574 43.478 0.00 0.00 0.00 3.06
2936 3025 5.836821 TTTGTCGATAGCTACTCAGATGT 57.163 39.130 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.