Multiple sequence alignment - TraesCS6A01G316300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G316300 chr6A 100.000 6408 0 0 1 6408 552758185 552764592 0.000000e+00 11834.0
1 TraesCS6A01G316300 chr6B 86.413 2311 216 54 1482 3748 610811521 610813777 0.000000e+00 2438.0
2 TraesCS6A01G316300 chr6B 93.278 967 55 6 4448 5408 610814680 610815642 0.000000e+00 1417.0
3 TraesCS6A01G316300 chr6B 92.896 732 36 8 1 731 610808984 610809700 0.000000e+00 1050.0
4 TraesCS6A01G316300 chr6B 91.768 741 27 9 757 1489 610809947 610810661 0.000000e+00 1000.0
5 TraesCS6A01G316300 chr6B 89.118 726 52 12 5689 6408 610816028 610816732 0.000000e+00 878.0
6 TraesCS6A01G316300 chr6B 93.651 252 16 0 5406 5657 610815687 610815938 1.690000e-100 377.0
7 TraesCS6A01G316300 chr6D 83.500 2794 277 88 1650 4343 406336741 406339450 0.000000e+00 2436.0
8 TraesCS6A01G316300 chr6D 93.725 988 44 11 1 984 406334892 406335865 0.000000e+00 1465.0
9 TraesCS6A01G316300 chr6D 92.761 967 52 12 4448 5408 406339563 406340517 0.000000e+00 1382.0
10 TraesCS6A01G316300 chr6D 92.461 451 25 3 1149 1598 406336276 406336718 2.520000e-178 636.0
11 TraesCS6A01G316300 chr6D 90.570 456 35 4 5954 6408 406341273 406341721 1.190000e-166 597.0
12 TraesCS6A01G316300 chr6D 91.724 290 14 6 5689 5970 406340889 406341176 1.670000e-105 394.0
13 TraesCS6A01G316300 chr6D 87.302 252 22 3 5406 5657 406340561 406340802 4.890000e-71 279.0
14 TraesCS6A01G316300 chr5D 93.194 720 41 3 5689 6408 435612750 435612039 0.000000e+00 1051.0
15 TraesCS6A01G316300 chr5D 96.818 220 7 0 5189 5408 435613353 435613134 1.010000e-97 368.0
16 TraesCS6A01G316300 chr5D 88.889 261 26 2 5406 5665 435613090 435612832 1.040000e-82 318.0
17 TraesCS6A01G316300 chr1D 92.361 720 47 3 5689 6408 249579859 249579148 0.000000e+00 1018.0
18 TraesCS6A01G316300 chr1D 94.545 220 12 0 5189 5408 249580462 249580243 2.210000e-89 340.0
19 TraesCS6A01G316300 chr1D 89.328 253 24 2 5406 5657 249580199 249579949 1.340000e-81 315.0
20 TraesCS6A01G316300 chr7B 77.215 316 47 14 1021 1331 94267842 94268137 1.850000e-35 161.0
21 TraesCS6A01G316300 chr7A 77.188 320 46 14 1021 1331 131811961 131812262 1.850000e-35 161.0
22 TraesCS6A01G316300 chr7D 77.231 325 37 21 1021 1331 133199650 133199951 8.600000e-34 156.0
23 TraesCS6A01G316300 chr2D 90.909 44 4 0 4369 4412 441576710 441576667 6.940000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G316300 chr6A 552758185 552764592 6407 False 11834.000000 11834 100.000000 1 6408 1 chr6A.!!$F1 6407
1 TraesCS6A01G316300 chr6B 610808984 610816732 7748 False 1193.333333 2438 91.187333 1 6408 6 chr6B.!!$F1 6407
2 TraesCS6A01G316300 chr6D 406334892 406341721 6829 False 1027.000000 2436 90.291857 1 6408 7 chr6D.!!$F1 6407
3 TraesCS6A01G316300 chr5D 435612039 435613353 1314 True 579.000000 1051 92.967000 5189 6408 3 chr5D.!!$R1 1219
4 TraesCS6A01G316300 chr1D 249579148 249580462 1314 True 557.666667 1018 92.078000 5189 6408 3 chr1D.!!$R1 1219

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
803 1027 0.460311 CGATGTCTGGACCCACCTAC 59.540 60.0 0.00 0.00 39.86 3.18 F
1332 1803 0.529378 GCCAAGGAGATGCAAGGTTG 59.471 55.0 0.00 0.00 0.00 3.77 F
2288 3656 0.327924 TGATGGATCCGTTGGTGCTT 59.672 50.0 8.18 0.00 0.00 3.91 F
2504 3884 0.616891 TCTCTCACACATGCATGGCT 59.383 50.0 29.41 11.83 0.00 4.75 F
4384 6164 0.036010 ACGTCCATTTCTCCAGCAGG 60.036 55.0 0.00 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1714 3056 0.250945 TGCCGGGATTACAAACAGCA 60.251 50.000 2.18 0.00 0.00 4.41 R
3042 4427 0.448990 CCTGCGACCATCACATTGTG 59.551 55.000 10.64 10.64 34.45 3.33 R
3418 4839 0.520404 AAGCAAGCGCACATTCAGAG 59.480 50.000 11.47 0.00 42.27 3.35 R
4386 6166 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17 R
5632 7542 1.000274 GTAAAAAGTGCCCCAGTGCTG 60.000 52.381 0.00 0.00 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
236 238 1.016627 GCACAAGAACAGTCAGCACA 58.983 50.000 0.00 0.00 0.00 4.57
237 239 1.003116 GCACAAGAACAGTCAGCACAG 60.003 52.381 0.00 0.00 0.00 3.66
563 565 0.884704 CTGTTGGAGAACACCACCCG 60.885 60.000 0.00 0.00 39.85 5.28
574 576 1.678635 ACCACCCGTGATGCCATTG 60.679 57.895 0.00 0.00 0.00 2.82
586 588 2.109126 GCCATTGTCCACGCTCTCC 61.109 63.158 0.00 0.00 0.00 3.71
588 590 1.599047 CATTGTCCACGCTCTCCCT 59.401 57.895 0.00 0.00 0.00 4.20
593 595 0.968393 GTCCACGCTCTCCCTTCTCT 60.968 60.000 0.00 0.00 0.00 3.10
594 596 0.681564 TCCACGCTCTCCCTTCTCTC 60.682 60.000 0.00 0.00 0.00 3.20
604 606 1.601171 CCTTCTCTCCCTGCCTGTG 59.399 63.158 0.00 0.00 0.00 3.66
628 630 4.823157 TCGTCGGATGTTTCTGGATTTTA 58.177 39.130 0.00 0.00 0.00 1.52
675 677 3.583086 CCGGGGACTGTGGAGATTTATAT 59.417 47.826 0.00 0.00 0.00 0.86
676 678 4.322801 CCGGGGACTGTGGAGATTTATATC 60.323 50.000 0.00 0.00 0.00 1.63
677 679 4.322801 CGGGGACTGTGGAGATTTATATCC 60.323 50.000 0.00 0.00 38.64 2.59
678 680 4.322801 GGGGACTGTGGAGATTTATATCCG 60.323 50.000 0.00 0.00 41.01 4.18
679 681 4.246458 GGACTGTGGAGATTTATATCCGC 58.754 47.826 9.44 9.44 46.11 5.54
685 687 4.327357 GTGGAGATTTATATCCGCGATGTG 59.673 45.833 8.23 0.00 41.01 3.21
789 1013 2.046314 CACCTTTCCCCGCGATGT 60.046 61.111 8.23 0.00 0.00 3.06
803 1027 0.460311 CGATGTCTGGACCCACCTAC 59.540 60.000 0.00 0.00 39.86 3.18
804 1028 1.568504 GATGTCTGGACCCACCTACA 58.431 55.000 0.00 0.00 38.72 2.74
805 1029 1.906574 GATGTCTGGACCCACCTACAA 59.093 52.381 0.00 0.00 38.20 2.41
806 1030 1.348064 TGTCTGGACCCACCTACAAG 58.652 55.000 0.00 0.00 39.86 3.16
807 1031 0.613777 GTCTGGACCCACCTACAAGG 59.386 60.000 0.00 0.00 42.49 3.61
808 1032 1.198759 TCTGGACCCACCTACAAGGC 61.199 60.000 0.00 0.00 39.63 4.35
864 1090 0.829182 AGCCCAAAACCCAAGAGCAG 60.829 55.000 0.00 0.00 0.00 4.24
938 1164 4.115199 GCCCACCCGCTCCATCTT 62.115 66.667 0.00 0.00 0.00 2.40
964 1190 1.303091 CGACCCCAAATCCACCGAAC 61.303 60.000 0.00 0.00 0.00 3.95
965 1191 0.963856 GACCCCAAATCCACCGAACC 60.964 60.000 0.00 0.00 0.00 3.62
1013 1239 2.218603 CCGAATTGGGTTTAGATCGGG 58.781 52.381 4.19 0.00 44.47 5.14
1086 1312 2.511600 GGACGGCGACATGGAAGG 60.512 66.667 16.62 0.00 0.00 3.46
1167 1638 3.958860 CCATCCCCATCCCTCGGC 61.959 72.222 0.00 0.00 0.00 5.54
1177 1648 3.465403 CCCTCGGCTCCCTGTCTG 61.465 72.222 0.00 0.00 0.00 3.51
1213 1684 3.589495 ACCTAGTTTAGTTCTGACCGC 57.411 47.619 0.00 0.00 0.00 5.68
1332 1803 0.529378 GCCAAGGAGATGCAAGGTTG 59.471 55.000 0.00 0.00 0.00 3.77
1466 1940 4.340381 AGGCTATCAGGCAATTTGATGAAC 59.660 41.667 0.00 0.00 44.19 3.18
1495 2836 7.861629 AGATTGGTACTCATAAATCTGACCAA 58.138 34.615 6.08 6.08 37.84 3.67
1515 2857 8.192110 TGACCAAATTACTGTTTCTTTTACACC 58.808 33.333 0.00 0.00 0.00 4.16
1518 2860 8.344098 CCAAATTACTGTTTCTTTTACACCGTA 58.656 33.333 0.00 0.00 0.00 4.02
1598 2940 9.893634 TTGAGTAGGTAAAATAAATCGGATGAA 57.106 29.630 0.00 0.00 0.00 2.57
1605 2947 7.169140 GGTAAAATAAATCGGATGAATTGTGCC 59.831 37.037 6.93 6.93 0.00 5.01
1606 2948 6.469782 AAATAAATCGGATGAATTGTGCCT 57.530 33.333 0.00 0.00 0.00 4.75
1608 2950 4.376340 AAATCGGATGAATTGTGCCTTC 57.624 40.909 0.00 0.00 0.00 3.46
1609 2951 2.787473 TCGGATGAATTGTGCCTTCT 57.213 45.000 0.00 0.00 0.00 2.85
1610 2952 2.358957 TCGGATGAATTGTGCCTTCTG 58.641 47.619 0.00 0.00 0.00 3.02
1611 2953 1.202222 CGGATGAATTGTGCCTTCTGC 60.202 52.381 0.00 0.00 41.77 4.26
1630 2972 1.725641 CACATAGTGCCGATGTGTGT 58.274 50.000 15.36 0.00 45.99 3.72
1631 2973 2.887337 CACATAGTGCCGATGTGTGTA 58.113 47.619 15.36 0.00 45.99 2.90
1632 2974 2.860136 CACATAGTGCCGATGTGTGTAG 59.140 50.000 15.36 0.00 45.99 2.74
1633 2975 2.496070 ACATAGTGCCGATGTGTGTAGT 59.504 45.455 1.31 0.00 36.18 2.73
1634 2976 3.056107 ACATAGTGCCGATGTGTGTAGTT 60.056 43.478 1.31 0.00 36.18 2.24
1635 2977 2.543777 AGTGCCGATGTGTGTAGTTT 57.456 45.000 0.00 0.00 0.00 2.66
1636 2978 2.143122 AGTGCCGATGTGTGTAGTTTG 58.857 47.619 0.00 0.00 0.00 2.93
1637 2979 1.871039 GTGCCGATGTGTGTAGTTTGT 59.129 47.619 0.00 0.00 0.00 2.83
1638 2980 3.061322 GTGCCGATGTGTGTAGTTTGTA 58.939 45.455 0.00 0.00 0.00 2.41
1639 2981 3.495377 GTGCCGATGTGTGTAGTTTGTAA 59.505 43.478 0.00 0.00 0.00 2.41
1640 2982 3.495377 TGCCGATGTGTGTAGTTTGTAAC 59.505 43.478 0.00 0.00 0.00 2.50
1641 2983 3.120442 GCCGATGTGTGTAGTTTGTAACC 60.120 47.826 0.00 0.00 0.00 2.85
1642 2984 4.059511 CCGATGTGTGTAGTTTGTAACCA 58.940 43.478 0.00 0.00 0.00 3.67
1643 2985 4.084223 CCGATGTGTGTAGTTTGTAACCAC 60.084 45.833 0.00 0.00 0.00 4.16
1644 2986 4.508492 CGATGTGTGTAGTTTGTAACCACA 59.492 41.667 0.00 0.00 33.25 4.17
1647 2989 3.243226 GTGTAGTTTGTAACCACACGC 57.757 47.619 5.72 0.00 42.40 5.34
1648 2990 1.859703 TGTAGTTTGTAACCACACGCG 59.140 47.619 3.53 3.53 33.30 6.01
1677 3019 4.911514 TGTTTTAAGTTCCTTCTGCACC 57.088 40.909 0.00 0.00 0.00 5.01
1686 3028 3.616956 TCCTTCTGCACCACTATTGAG 57.383 47.619 0.00 0.00 0.00 3.02
1694 3036 5.046663 TCTGCACCACTATTGAGTTACATGA 60.047 40.000 0.00 0.00 31.73 3.07
1699 3041 7.466455 GCACCACTATTGAGTTACATGAATCTG 60.466 40.741 0.00 0.00 31.73 2.90
1703 3045 8.323854 CACTATTGAGTTACATGAATCTGAACG 58.676 37.037 0.00 0.00 31.73 3.95
1706 3048 6.466308 TGAGTTACATGAATCTGAACGTTG 57.534 37.500 5.00 0.00 0.00 4.10
1707 3049 6.220201 TGAGTTACATGAATCTGAACGTTGA 58.780 36.000 5.00 0.00 0.00 3.18
1708 3050 6.145534 TGAGTTACATGAATCTGAACGTTGAC 59.854 38.462 5.00 0.00 0.00 3.18
1711 3053 3.748048 ACATGAATCTGAACGTTGACTGG 59.252 43.478 5.00 0.00 0.00 4.00
1712 3054 3.469008 TGAATCTGAACGTTGACTGGT 57.531 42.857 5.00 0.00 0.00 4.00
1714 3056 4.196193 TGAATCTGAACGTTGACTGGTTT 58.804 39.130 5.00 0.00 0.00 3.27
1715 3057 4.035091 TGAATCTGAACGTTGACTGGTTTG 59.965 41.667 5.00 0.00 0.00 2.93
1729 3075 3.320826 ACTGGTTTGCTGTTTGTAATCCC 59.679 43.478 0.00 0.00 31.69 3.85
1758 3104 6.327386 AGACTCTAGAGATCTGGTTCTTCT 57.673 41.667 26.57 11.06 0.00 2.85
1760 3106 8.045720 AGACTCTAGAGATCTGGTTCTTCTAT 57.954 38.462 26.57 0.00 0.00 1.98
1761 3107 9.166222 AGACTCTAGAGATCTGGTTCTTCTATA 57.834 37.037 26.57 0.00 0.00 1.31
1762 3108 9.959721 GACTCTAGAGATCTGGTTCTTCTATAT 57.040 37.037 26.57 0.00 0.00 0.86
1763 3109 9.739276 ACTCTAGAGATCTGGTTCTTCTATATG 57.261 37.037 26.57 0.00 0.00 1.78
1806 3163 9.143631 GCACTTCAAGAATAATTTTGTGCTAAT 57.856 29.630 11.46 0.00 43.08 1.73
1831 3188 5.392767 TTCAATTTTAAACTGCCGCCATA 57.607 34.783 0.00 0.00 0.00 2.74
1834 3191 6.402222 TCAATTTTAAACTGCCGCCATATTT 58.598 32.000 0.00 0.00 0.00 1.40
1837 3194 4.630894 TTAAACTGCCGCCATATTTCAG 57.369 40.909 0.00 0.00 0.00 3.02
1928 3295 5.792741 ACTCACTCTTCTCCAATCTTTCTG 58.207 41.667 0.00 0.00 0.00 3.02
1929 3296 4.573900 TCACTCTTCTCCAATCTTTCTGC 58.426 43.478 0.00 0.00 0.00 4.26
2005 3372 4.024218 GTCTGTGCAATGAAGATATGCCTC 60.024 45.833 0.00 0.00 39.31 4.70
2011 3378 3.845781 ATGAAGATATGCCTCGTGGTT 57.154 42.857 5.26 0.00 35.27 3.67
2020 3387 1.202710 TGCCTCGTGGTTTCTTGCTTA 60.203 47.619 5.26 0.00 35.27 3.09
2028 3395 5.178623 TCGTGGTTTCTTGCTTATGTAGTTG 59.821 40.000 0.00 0.00 0.00 3.16
2040 3407 5.817816 GCTTATGTAGTTGAAGTAGTGGCAT 59.182 40.000 0.00 0.00 0.00 4.40
2041 3408 6.238211 GCTTATGTAGTTGAAGTAGTGGCATG 60.238 42.308 0.00 0.00 0.00 4.06
2049 3416 5.159273 TGAAGTAGTGGCATGATTGTGTA 57.841 39.130 0.00 0.00 0.00 2.90
2065 3432 6.601217 TGATTGTGTAGCATGCCTTGTATTAA 59.399 34.615 15.66 0.41 0.00 1.40
2066 3433 7.285172 TGATTGTGTAGCATGCCTTGTATTAAT 59.715 33.333 15.66 5.46 0.00 1.40
2067 3434 6.618287 TGTGTAGCATGCCTTGTATTAATC 57.382 37.500 15.66 0.00 0.00 1.75
2070 3437 7.339212 TGTGTAGCATGCCTTGTATTAATCTTT 59.661 33.333 15.66 0.00 0.00 2.52
2071 3438 7.645340 GTGTAGCATGCCTTGTATTAATCTTTG 59.355 37.037 15.66 0.00 0.00 2.77
2072 3439 6.780457 AGCATGCCTTGTATTAATCTTTGT 57.220 33.333 15.66 0.00 0.00 2.83
2092 3459 9.638239 TCTTTGTTTTGGCATGAATACTTATTC 57.362 29.630 0.00 2.50 41.81 1.75
2094 3461 7.151999 TGTTTTGGCATGAATACTTATTCGT 57.848 32.000 0.00 1.92 43.80 3.85
2151 3518 7.894376 AATGTTATGGCTGTCTTTCAAAATG 57.106 32.000 0.00 0.00 0.00 2.32
2174 3541 6.457355 TGATTTTCCATGGTTATGCATATGC 58.543 36.000 21.09 21.09 42.50 3.14
2178 3545 3.256383 TCCATGGTTATGCATATGCTTGC 59.744 43.478 27.13 17.12 42.66 4.01
2186 3553 2.975266 TGCATATGCTTGCTTTTTGGG 58.025 42.857 27.13 0.00 43.18 4.12
2248 3616 8.897752 GGATGAGCTTTAGACATTTGATTTAGT 58.102 33.333 0.00 0.00 0.00 2.24
2278 3646 5.976458 TGCCTTTTTATTTGTGATGGATCC 58.024 37.500 4.20 4.20 0.00 3.36
2282 3650 6.531240 CCTTTTTATTTGTGATGGATCCGTTG 59.469 38.462 8.18 0.00 0.00 4.10
2288 3656 0.327924 TGATGGATCCGTTGGTGCTT 59.672 50.000 8.18 0.00 0.00 3.91
2293 3661 0.727398 GATCCGTTGGTGCTTACAGC 59.273 55.000 0.00 0.00 44.74 4.40
2343 3712 4.846779 TTTATCAGTGTTTTGGTGCCTC 57.153 40.909 0.00 0.00 0.00 4.70
2352 3721 5.539955 AGTGTTTTGGTGCCTCATCTTTTAT 59.460 36.000 0.00 0.00 0.00 1.40
2353 3722 5.634859 GTGTTTTGGTGCCTCATCTTTTATG 59.365 40.000 0.00 0.00 0.00 1.90
2375 3744 3.125316 GTGCTACCAGTTGTCTTATGCAC 59.875 47.826 0.00 0.00 40.72 4.57
2380 3749 4.324267 ACCAGTTGTCTTATGCACTTACC 58.676 43.478 0.00 0.00 0.00 2.85
2390 3759 9.162764 TGTCTTATGCACTTACCTATTTTCTTC 57.837 33.333 0.00 0.00 0.00 2.87
2430 3799 1.795768 CGTCTACAGCTGAGGCAAAA 58.204 50.000 23.35 0.00 41.70 2.44
2433 3802 3.403038 GTCTACAGCTGAGGCAAAAGAA 58.597 45.455 23.35 0.00 41.70 2.52
2439 3808 1.683385 GCTGAGGCAAAAGAACAGGTT 59.317 47.619 0.00 0.00 38.54 3.50
2445 3814 2.407090 GCAAAAGAACAGGTTGATGCC 58.593 47.619 0.00 0.00 0.00 4.40
2496 3876 7.564660 AGATTTCCTAATCTCTCTCTCACACAT 59.435 37.037 0.00 0.00 45.82 3.21
2504 3884 0.616891 TCTCTCACACATGCATGGCT 59.383 50.000 29.41 11.83 0.00 4.75
2550 3930 9.730705 AATGTTGGGTCTGTATTATGATAGATG 57.269 33.333 0.00 0.00 0.00 2.90
2579 3959 5.087391 TGTGTTGCCAAGGTATTCGTATA 57.913 39.130 0.00 0.00 0.00 1.47
2580 3960 5.113383 TGTGTTGCCAAGGTATTCGTATAG 58.887 41.667 0.00 0.00 0.00 1.31
2581 3961 5.114081 GTGTTGCCAAGGTATTCGTATAGT 58.886 41.667 0.00 0.00 0.00 2.12
2688 4070 7.606456 TCTTTGGTGCACTTAACTTAGATAAGG 59.394 37.037 17.98 4.50 37.62 2.69
2721 4103 5.449177 CGCCAAAAGGTCTGATTTATTCTCC 60.449 44.000 0.00 0.00 0.00 3.71
2748 4130 9.903682 ACTTCTCTTATGTTCAAATGTTCAATG 57.096 29.630 0.00 0.00 0.00 2.82
2750 4132 7.884257 TCTCTTATGTTCAAATGTTCAATGCA 58.116 30.769 0.00 0.00 0.00 3.96
2791 4173 2.409948 ATTGCTCTGTTCCTGCCTAC 57.590 50.000 0.00 0.00 0.00 3.18
2793 4175 1.153549 GCTCTGTTCCTGCCTACCG 60.154 63.158 0.00 0.00 0.00 4.02
2802 4184 1.005037 CTGCCTACCGTTGCTGTCA 60.005 57.895 0.00 0.00 0.00 3.58
2821 4203 6.358974 TGTCAGCAGGCAATATATAGCTAA 57.641 37.500 0.00 0.00 0.00 3.09
2850 4233 9.217278 CATAACTCTTTGATATGCTATTGCTCT 57.783 33.333 0.00 0.00 40.48 4.09
2854 4237 9.790344 ACTCTTTGATATGCTATTGCTCTTAAT 57.210 29.630 0.00 0.00 40.48 1.40
2883 4266 2.418368 TGCTTAATGCCGTTCCTCAT 57.582 45.000 0.00 0.00 42.00 2.90
2933 4316 7.915397 AGTTTTGCAGTGTTGTTTAGATTAGTG 59.085 33.333 0.00 0.00 0.00 2.74
2936 4319 8.439993 TTGCAGTGTTGTTTAGATTAGTGTTA 57.560 30.769 0.00 0.00 0.00 2.41
2937 4320 8.439993 TGCAGTGTTGTTTAGATTAGTGTTAA 57.560 30.769 0.00 0.00 0.00 2.01
2962 4345 5.647658 CCTTTGTCACCATCATTTGCTAGTA 59.352 40.000 0.00 0.00 0.00 1.82
2971 4354 8.355169 CACCATCATTTGCTAGTATGCTAAAAT 58.645 33.333 0.00 0.00 32.27 1.82
2981 4364 9.618890 TGCTAGTATGCTAAAATCTCAGAAAAT 57.381 29.630 0.00 0.00 0.00 1.82
3013 4398 9.981114 CTATTGTTTTTATATTGGAATGTCCCC 57.019 33.333 0.00 0.00 35.03 4.81
3082 4467 4.726825 AGGGGTAGGCTTTTGATATCAAGA 59.273 41.667 17.28 12.71 37.15 3.02
3087 4472 7.122799 GGGTAGGCTTTTGATATCAAGAACTTT 59.877 37.037 17.28 6.89 37.15 2.66
3099 4490 4.065088 TCAAGAACTTTCCGATGGTTCAG 58.935 43.478 13.12 7.73 40.97 3.02
3247 4658 4.963628 AGGATAAGTTACCTCCCTGAAGAC 59.036 45.833 0.00 0.00 0.00 3.01
3248 4659 4.715297 GGATAAGTTACCTCCCTGAAGACA 59.285 45.833 0.00 0.00 0.00 3.41
3249 4660 5.163395 GGATAAGTTACCTCCCTGAAGACAG 60.163 48.000 0.00 0.00 43.12 3.51
3273 4684 4.135747 AGGAAGTCTAGAAATCTGCTGC 57.864 45.455 0.00 0.00 0.00 5.25
3274 4685 3.774216 AGGAAGTCTAGAAATCTGCTGCT 59.226 43.478 0.00 0.00 0.00 4.24
3276 4687 4.141959 GGAAGTCTAGAAATCTGCTGCTCT 60.142 45.833 0.00 0.00 0.00 4.09
3331 4752 4.281435 TGGTGTGATTCTAAACCACTCGTA 59.719 41.667 0.00 0.00 37.77 3.43
3355 4776 3.251479 TGAGAATCATCTGAACGGTGG 57.749 47.619 0.00 0.00 42.56 4.61
3404 4825 3.629398 CAGAATGGAGCCTTATGTTGACC 59.371 47.826 0.00 0.00 0.00 4.02
3418 4839 2.096819 TGTTGACCGTTCTTTTGCTCAC 59.903 45.455 0.00 0.00 0.00 3.51
3439 4860 2.353889 CTCTGAATGTGCGCTTGCTTAT 59.646 45.455 9.73 0.00 40.12 1.73
3440 4861 2.352651 TCTGAATGTGCGCTTGCTTATC 59.647 45.455 9.73 0.00 40.12 1.75
3484 4918 1.977854 AGAACTGTCCATGTGCTACCA 59.022 47.619 0.00 0.00 0.00 3.25
3512 4946 4.534168 CATATTCATGCTGCTCCTTTTCG 58.466 43.478 0.00 0.00 0.00 3.46
3530 4964 6.422400 CCTTTTCGCTCTCTTTATGGTCTATC 59.578 42.308 0.00 0.00 0.00 2.08
3541 4975 8.873215 TCTTTATGGTCTATCGTTGATCTTTC 57.127 34.615 0.00 0.00 0.00 2.62
3558 4992 6.808704 TGATCTTTCTCTAAACGTGATGTCTG 59.191 38.462 0.00 0.00 0.00 3.51
3588 5022 7.475034 GCGTTAGCATAAAAGTGTTTCTAAC 57.525 36.000 0.00 0.00 44.35 2.34
3594 5028 8.156994 AGCATAAAAGTGTTTCTAACGGTTTA 57.843 30.769 0.00 0.00 0.00 2.01
3653 5087 3.081804 CCCAACATTCTGTACTTCCCAC 58.918 50.000 0.00 0.00 0.00 4.61
3661 5096 1.895798 CTGTACTTCCCACAGAGCTGA 59.104 52.381 4.21 0.00 45.10 4.26
3723 5158 6.803154 AACTAAATGCTGTTGAGGTACTTC 57.197 37.500 0.00 0.00 41.55 3.01
3724 5159 5.246307 ACTAAATGCTGTTGAGGTACTTCC 58.754 41.667 2.10 0.00 41.55 3.46
3748 5183 6.157123 CCTACCTTAAGATTCTTGAAGGGAGT 59.843 42.308 25.77 15.44 45.27 3.85
3752 5187 8.929487 ACCTTAAGATTCTTGAAGGGAGTATAG 58.071 37.037 23.71 9.07 42.39 1.31
3840 5275 4.653801 TGCTTGCATTATAGACTGTAGGGA 59.346 41.667 0.00 0.00 0.00 4.20
3841 5276 5.221521 TGCTTGCATTATAGACTGTAGGGAG 60.222 44.000 0.00 0.00 0.00 4.30
3844 5279 4.653801 TGCATTATAGACTGTAGGGAGCAA 59.346 41.667 0.00 0.00 0.00 3.91
3851 5286 7.676683 ATAGACTGTAGGGAGCAAAAGAATA 57.323 36.000 0.00 0.00 0.00 1.75
3860 5295 7.872113 AGGGAGCAAAAGAATATAGAAGTTG 57.128 36.000 0.00 0.00 0.00 3.16
3868 5303 9.727627 CAAAAGAATATAGAAGTTGCATCTTCC 57.272 33.333 26.55 14.46 43.17 3.46
3921 5356 5.581605 TCAAGCTTTTCTTCACATGTGTTC 58.418 37.500 24.63 6.94 31.27 3.18
3923 5358 3.003689 AGCTTTTCTTCACATGTGTTCCG 59.996 43.478 24.63 11.81 0.00 4.30
3927 5362 6.438259 TTTTCTTCACATGTGTTCCGTAAA 57.562 33.333 24.63 14.89 0.00 2.01
3930 5365 7.731882 TTCTTCACATGTGTTCCGTAAATTA 57.268 32.000 24.63 0.00 0.00 1.40
3931 5366 7.124347 TCTTCACATGTGTTCCGTAAATTAC 57.876 36.000 24.63 0.00 0.00 1.89
3937 5372 7.322699 CACATGTGTTCCGTAAATTACAACTTC 59.677 37.037 18.03 1.35 0.00 3.01
3939 5374 7.181143 TGTGTTCCGTAAATTACAACTTCTC 57.819 36.000 3.91 0.00 0.00 2.87
3940 5375 6.203338 TGTGTTCCGTAAATTACAACTTCTCC 59.797 38.462 3.91 0.00 0.00 3.71
3941 5376 6.203338 GTGTTCCGTAAATTACAACTTCTCCA 59.797 38.462 3.91 0.00 0.00 3.86
3943 5378 6.978343 TCCGTAAATTACAACTTCTCCATG 57.022 37.500 3.91 0.00 0.00 3.66
3945 5380 6.370442 TCCGTAAATTACAACTTCTCCATGTG 59.630 38.462 3.91 0.00 0.00 3.21
3946 5381 6.148811 CCGTAAATTACAACTTCTCCATGTGT 59.851 38.462 3.91 0.00 0.00 3.72
3950 5385 6.748333 ATTACAACTTCTCCATGTGTCATG 57.252 37.500 3.11 3.11 0.00 3.07
3951 5386 2.816087 ACAACTTCTCCATGTGTCATGC 59.184 45.455 4.43 0.00 0.00 4.06
3952 5387 2.815503 CAACTTCTCCATGTGTCATGCA 59.184 45.455 4.43 0.00 0.00 3.96
3953 5388 3.144657 ACTTCTCCATGTGTCATGCAA 57.855 42.857 0.00 0.00 0.00 4.08
3954 5389 3.693807 ACTTCTCCATGTGTCATGCAAT 58.306 40.909 0.00 0.00 0.00 3.56
3975 5417 6.183359 GCAATGCATGACTTTTACTTTTACCG 60.183 38.462 0.00 0.00 0.00 4.02
3998 5440 7.707035 ACCGTTCTCAGATTGTTAACTATCATC 59.293 37.037 25.21 13.40 31.92 2.92
3999 5441 7.169982 CCGTTCTCAGATTGTTAACTATCATCC 59.830 40.741 25.21 10.48 31.92 3.51
4000 5442 7.706607 CGTTCTCAGATTGTTAACTATCATCCA 59.293 37.037 25.21 9.23 31.92 3.41
4001 5443 8.821894 GTTCTCAGATTGTTAACTATCATCCAC 58.178 37.037 25.21 14.26 31.92 4.02
4002 5444 7.500992 TCTCAGATTGTTAACTATCATCCACC 58.499 38.462 25.21 4.29 31.92 4.61
4003 5445 6.591935 TCAGATTGTTAACTATCATCCACCC 58.408 40.000 25.21 3.69 31.92 4.61
4004 5446 5.765182 CAGATTGTTAACTATCATCCACCCC 59.235 44.000 25.21 3.10 31.92 4.95
4005 5447 5.431731 AGATTGTTAACTATCATCCACCCCA 59.568 40.000 25.21 0.00 31.92 4.96
4006 5448 4.497291 TGTTAACTATCATCCACCCCAC 57.503 45.455 7.22 0.00 0.00 4.61
4007 5449 3.201266 TGTTAACTATCATCCACCCCACC 59.799 47.826 7.22 0.00 0.00 4.61
4008 5450 1.222567 AACTATCATCCACCCCACCC 58.777 55.000 0.00 0.00 0.00 4.61
4009 5451 0.697854 ACTATCATCCACCCCACCCC 60.698 60.000 0.00 0.00 0.00 4.95
4010 5452 1.386772 TATCATCCACCCCACCCCC 60.387 63.158 0.00 0.00 0.00 5.40
4011 5453 2.215436 TATCATCCACCCCACCCCCA 62.215 60.000 0.00 0.00 0.00 4.96
4012 5454 4.060667 CATCCACCCCACCCCCAC 62.061 72.222 0.00 0.00 0.00 4.61
4043 5485 5.806654 AAAAGCATAGTCCCACAAATGTT 57.193 34.783 0.00 0.00 0.00 2.71
4045 5487 3.356290 AGCATAGTCCCACAAATGTTCC 58.644 45.455 0.00 0.00 0.00 3.62
4046 5488 3.010584 AGCATAGTCCCACAAATGTTCCT 59.989 43.478 0.00 0.00 0.00 3.36
4047 5489 3.378427 GCATAGTCCCACAAATGTTCCTC 59.622 47.826 0.00 0.00 0.00 3.71
4049 5491 3.146104 AGTCCCACAAATGTTCCTCTG 57.854 47.619 0.00 0.00 0.00 3.35
4050 5492 1.541588 GTCCCACAAATGTTCCTCTGC 59.458 52.381 0.00 0.00 0.00 4.26
4062 5504 5.592104 TGTTCCTCTGCGAATCATACTTA 57.408 39.130 0.00 0.00 0.00 2.24
4063 5505 5.972935 TGTTCCTCTGCGAATCATACTTAA 58.027 37.500 0.00 0.00 0.00 1.85
4124 5883 7.939039 TCTCATTCATTGTTCCTATTGGATACC 59.061 37.037 0.00 0.00 42.81 2.73
4135 5894 4.380233 CCTATTGGATACCGCTACTTACGG 60.380 50.000 0.00 0.00 45.98 4.02
4149 5908 2.094854 ACTTACGGTAGCGAGGTTTCTG 60.095 50.000 22.88 4.59 0.00 3.02
4163 5938 5.238650 CGAGGTTTCTGTTGTACCTTCAATT 59.761 40.000 0.00 0.00 42.21 2.32
4176 5951 7.488322 TGTACCTTCAATTTTGACTTTTGAGG 58.512 34.615 5.36 5.36 36.83 3.86
4227 6002 8.983724 CATCGACTAATCTCTATATCAGCGATA 58.016 37.037 0.00 1.68 33.06 2.92
4236 6011 8.856153 TCTCTATATCAGCGATAGTTTTCTCT 57.144 34.615 0.00 0.00 39.35 3.10
4237 6012 8.726068 TCTCTATATCAGCGATAGTTTTCTCTG 58.274 37.037 0.00 0.00 39.35 3.35
4238 6013 7.821652 TCTATATCAGCGATAGTTTTCTCTGG 58.178 38.462 0.00 0.00 39.35 3.86
4239 6014 2.893637 TCAGCGATAGTTTTCTCTGGC 58.106 47.619 0.00 0.00 39.35 4.85
4240 6015 2.497675 TCAGCGATAGTTTTCTCTGGCT 59.502 45.455 0.00 0.00 38.25 4.75
4241 6016 2.606725 CAGCGATAGTTTTCTCTGGCTG 59.393 50.000 0.00 0.00 44.21 4.85
4276 6056 4.295141 TCCCTCGGTTACAATGTCATTT 57.705 40.909 0.00 0.00 0.00 2.32
4277 6057 4.006989 TCCCTCGGTTACAATGTCATTTG 58.993 43.478 0.00 0.00 0.00 2.32
4309 6089 9.813080 GTTTTAATCTTGAGCTTGTGTAGTAAG 57.187 33.333 0.00 0.00 0.00 2.34
4310 6090 9.555727 TTTTAATCTTGAGCTTGTGTAGTAAGT 57.444 29.630 0.00 0.00 0.00 2.24
4320 6100 5.701290 GCTTGTGTAGTAAGTCAAAGACCAT 59.299 40.000 0.00 0.00 32.18 3.55
4353 6133 6.636044 CGTCATTAACTAATACTTCCTCCGTC 59.364 42.308 0.00 0.00 0.00 4.79
4355 6135 5.505173 TTAACTAATACTTCCTCCGTCCG 57.495 43.478 0.00 0.00 0.00 4.79
4356 6136 2.305009 ACTAATACTTCCTCCGTCCGG 58.695 52.381 0.00 0.00 0.00 5.14
4357 6137 2.092212 ACTAATACTTCCTCCGTCCGGA 60.092 50.000 0.00 0.00 42.90 5.14
4361 6141 1.856629 ACTTCCTCCGTCCGGAAATA 58.143 50.000 5.23 0.00 44.66 1.40
4363 6143 2.364647 ACTTCCTCCGTCCGGAAATATC 59.635 50.000 5.23 0.00 44.66 1.63
4364 6144 2.376695 TCCTCCGTCCGGAAATATCT 57.623 50.000 5.23 0.00 44.66 1.98
4365 6145 3.513909 TCCTCCGTCCGGAAATATCTA 57.486 47.619 5.23 0.00 44.66 1.98
4366 6146 3.152341 TCCTCCGTCCGGAAATATCTAC 58.848 50.000 5.23 0.00 44.66 2.59
4367 6147 2.095364 CCTCCGTCCGGAAATATCTACG 60.095 54.545 5.23 2.84 44.66 3.51
4368 6148 2.551459 CTCCGTCCGGAAATATCTACGT 59.449 50.000 5.23 0.00 44.66 3.57
4371 6151 2.291465 CGTCCGGAAATATCTACGTCCA 59.709 50.000 5.23 0.00 0.00 4.02
4372 6152 3.057736 CGTCCGGAAATATCTACGTCCAT 60.058 47.826 5.23 0.00 0.00 3.41
4373 6153 4.558095 CGTCCGGAAATATCTACGTCCATT 60.558 45.833 5.23 0.00 0.00 3.16
4374 6154 5.295152 GTCCGGAAATATCTACGTCCATTT 58.705 41.667 5.23 0.00 0.00 2.32
4377 6157 5.634020 CCGGAAATATCTACGTCCATTTCTC 59.366 44.000 16.77 10.31 37.48 2.87
4378 6158 5.634020 CGGAAATATCTACGTCCATTTCTCC 59.366 44.000 16.77 7.58 37.48 3.71
4379 6159 6.522054 GGAAATATCTACGTCCATTTCTCCA 58.478 40.000 16.77 0.00 37.48 3.86
4380 6160 6.647067 GGAAATATCTACGTCCATTTCTCCAG 59.353 42.308 16.77 0.00 37.48 3.86
4381 6161 2.961526 TCTACGTCCATTTCTCCAGC 57.038 50.000 0.00 0.00 0.00 4.85
4384 6164 0.036010 ACGTCCATTTCTCCAGCAGG 60.036 55.000 0.00 0.00 0.00 4.85
4386 6166 1.207089 CGTCCATTTCTCCAGCAGGTA 59.793 52.381 0.00 0.00 35.89 3.08
4388 6168 3.682718 CGTCCATTTCTCCAGCAGGTATT 60.683 47.826 0.00 0.00 35.89 1.89
4389 6169 4.273318 GTCCATTTCTCCAGCAGGTATTT 58.727 43.478 0.00 0.00 35.89 1.40
4390 6170 4.336713 GTCCATTTCTCCAGCAGGTATTTC 59.663 45.833 0.00 0.00 35.89 2.17
4391 6171 3.633986 CCATTTCTCCAGCAGGTATTTCC 59.366 47.826 0.00 0.00 35.89 3.13
4392 6172 2.691409 TTCTCCAGCAGGTATTTCCG 57.309 50.000 0.00 0.00 41.99 4.30
4393 6173 0.830648 TCTCCAGCAGGTATTTCCGG 59.169 55.000 0.00 0.00 41.99 5.14
4394 6174 0.830648 CTCCAGCAGGTATTTCCGGA 59.169 55.000 0.00 0.00 41.99 5.14
4395 6175 0.539986 TCCAGCAGGTATTTCCGGAC 59.460 55.000 1.83 0.00 41.99 4.79
4396 6176 0.810031 CCAGCAGGTATTTCCGGACG 60.810 60.000 1.83 0.00 41.99 4.79
4397 6177 0.810031 CAGCAGGTATTTCCGGACGG 60.810 60.000 1.83 3.96 41.99 4.79
4399 6179 0.529992 GCAGGTATTTCCGGACGGAG 60.530 60.000 13.64 1.75 46.06 4.63
4400 6180 0.104304 CAGGTATTTCCGGACGGAGG 59.896 60.000 13.64 0.00 46.06 4.30
4401 6181 1.047034 AGGTATTTCCGGACGGAGGG 61.047 60.000 13.64 0.00 46.06 4.30
4403 6183 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4405 6185 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
4406 6186 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12
4455 6300 7.573710 ACTATATGATTACCCTTCAAGTGCAA 58.426 34.615 0.00 0.00 0.00 4.08
4494 6351 8.631480 TCTAGTAGAATCTTGTTGTGTCAGTA 57.369 34.615 0.00 0.00 0.00 2.74
4499 6358 9.813080 GTAGAATCTTGTTGTGTCAGTAAATTC 57.187 33.333 0.00 0.00 0.00 2.17
4547 6406 5.095145 TCTTTCATCTCCATCCAGTTGAG 57.905 43.478 0.00 0.00 0.00 3.02
4693 6552 2.634453 ACAGCCAAAAGGCTTTGCTTAT 59.366 40.909 18.89 9.95 44.07 1.73
4779 6638 1.364626 CGCCAGATCAAGGTGCAGAC 61.365 60.000 5.04 0.00 0.00 3.51
4820 6679 4.894784 TCAGACATTGAGTTTCCAGTACC 58.105 43.478 0.00 0.00 0.00 3.34
4845 6704 8.887717 CCACCTCTCTTTAATAATGTCTTTGAG 58.112 37.037 0.00 0.00 0.00 3.02
4874 6733 2.622942 TCAACCTTCATTCTGTTGTGCC 59.377 45.455 0.00 0.00 40.13 5.01
5046 6905 6.399880 GCAAAACGTGGATGTTCAATTGTATG 60.400 38.462 5.13 0.00 0.00 2.39
5048 6907 3.128589 ACGTGGATGTTCAATTGTATGGC 59.871 43.478 5.13 0.00 0.00 4.40
5139 6999 1.405821 CTACAGGCCGTACTTCTGAGG 59.594 57.143 0.00 0.00 33.19 3.86
5360 7221 2.429610 ACTTGGTAGTCGTGTTGTCTGT 59.570 45.455 0.00 0.00 0.00 3.41
5453 7361 1.517238 TAGCATATGTCAGGCCCCAA 58.483 50.000 0.00 0.00 33.25 4.12
5456 7364 0.819259 CATATGTCAGGCCCCAACCG 60.819 60.000 0.00 0.00 33.69 4.44
5517 7425 3.857010 GCTGAAGAAACCAAACATTCCCG 60.857 47.826 0.00 0.00 0.00 5.14
5591 7499 4.478371 CTGCAGCCCTCCATCGCA 62.478 66.667 0.00 0.00 0.00 5.10
5601 7509 2.224281 CCCTCCATCGCAGCTAATGTTA 60.224 50.000 0.00 0.00 0.00 2.41
5610 7518 4.643334 TCGCAGCTAATGTTAGTCTTCCTA 59.357 41.667 0.00 0.00 33.32 2.94
5611 7519 5.302059 TCGCAGCTAATGTTAGTCTTCCTAT 59.698 40.000 0.00 0.00 33.32 2.57
5612 7520 5.631512 CGCAGCTAATGTTAGTCTTCCTATC 59.368 44.000 0.00 0.00 33.32 2.08
5625 7535 9.877178 TTAGTCTTCCTATCTCTGTTTGAAATC 57.123 33.333 0.00 0.00 0.00 2.17
5632 7542 6.256757 CCTATCTCTGTTTGAAATCCGAGAAC 59.743 42.308 7.49 0.00 32.06 3.01
5666 7594 9.806203 GGGCACTTTTTACTTTTTACTTTCTAA 57.194 29.630 0.00 0.00 0.00 2.10
5702 7672 3.487120 AAAGCCTATAAACCCTAGCCG 57.513 47.619 0.00 0.00 0.00 5.52
5703 7673 2.393630 AGCCTATAAACCCTAGCCGA 57.606 50.000 0.00 0.00 0.00 5.54
5710 7680 2.579410 AAACCCTAGCCGACATGTTT 57.421 45.000 0.00 0.00 0.00 2.83
5727 7697 1.410882 GTTTTGGTTGGCCTAAGTGCA 59.589 47.619 3.32 0.00 35.27 4.57
5740 7710 5.238583 GCCTAAGTGCATATCCTAATTCGT 58.761 41.667 0.00 0.00 0.00 3.85
5742 7712 5.573282 CCTAAGTGCATATCCTAATTCGTCG 59.427 44.000 0.00 0.00 0.00 5.12
5781 7751 2.438021 TCCCACAAAGTGTGCTACTCTT 59.562 45.455 2.77 0.00 46.51 2.85
5812 7782 4.559862 TGACTGAATTTCTCCCCTCTTC 57.440 45.455 0.00 0.00 0.00 2.87
5853 7830 3.961480 CCTAATATGGCAGATCGTCCA 57.039 47.619 10.68 10.68 36.70 4.02
5870 7847 1.733041 CACGCGTTCGACTCACCAT 60.733 57.895 10.22 0.00 39.41 3.55
5898 7875 2.490903 AGGAGCAATTCAAGTCATGTGC 59.509 45.455 0.00 0.00 0.00 4.57
5973 8063 9.566530 CTGATACGAATTCTACATATTCTGAGG 57.433 37.037 3.52 0.00 31.35 3.86
5985 8080 5.126545 ACATATTCTGAGGTTGTAGTACGCA 59.873 40.000 0.00 0.00 0.00 5.24
6016 8111 2.202610 TCGATTCTCGCTGCGTGG 60.203 61.111 22.48 15.53 40.21 4.94
6093 8189 7.526860 GCTCCTAATCAAGATCATCTACCACAT 60.527 40.741 0.00 0.00 0.00 3.21
6094 8190 7.901029 TCCTAATCAAGATCATCTACCACATC 58.099 38.462 0.00 0.00 0.00 3.06
6095 8191 7.038729 TCCTAATCAAGATCATCTACCACATCC 60.039 40.741 0.00 0.00 0.00 3.51
6096 8192 6.505048 AATCAAGATCATCTACCACATCCA 57.495 37.500 0.00 0.00 0.00 3.41
6097 8193 5.282055 TCAAGATCATCTACCACATCCAC 57.718 43.478 0.00 0.00 0.00 4.02
6098 8194 4.716287 TCAAGATCATCTACCACATCCACA 59.284 41.667 0.00 0.00 0.00 4.17
6112 8208 5.392703 CCACATCCACATGATCAAGTTCAAG 60.393 44.000 0.00 0.00 33.72 3.02
6115 8211 3.074390 TCCACATGATCAAGTTCAAGGGT 59.926 43.478 0.00 0.00 0.00 4.34
6365 8461 4.052229 CCCTCTTCGACCGCGTGT 62.052 66.667 4.92 1.93 38.98 4.49
6376 8472 1.392510 GACCGCGTGTTCTATTTGGAC 59.607 52.381 4.92 0.00 0.00 4.02
6386 8482 1.705337 CTATTTGGACGTGGGCAGCG 61.705 60.000 0.00 0.00 0.00 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
201 202 0.512952 GTGCAGATGTGTTCCGTGAC 59.487 55.000 0.00 0.00 0.00 3.67
236 238 1.661821 GCGTGCGTGACAGAGTTCT 60.662 57.895 0.00 0.00 0.00 3.01
237 239 1.661821 AGCGTGCGTGACAGAGTTC 60.662 57.895 0.00 0.00 0.00 3.01
331 333 3.280295 TCTTCTCAGGTAGTCGTCATCC 58.720 50.000 0.00 0.00 0.00 3.51
563 565 1.137404 GCGTGGACAATGGCATCAC 59.863 57.895 0.00 3.57 0.00 3.06
574 576 0.968393 AGAGAAGGGAGAGCGTGGAC 60.968 60.000 0.00 0.00 0.00 4.02
586 588 1.197430 ACACAGGCAGGGAGAGAAGG 61.197 60.000 0.00 0.00 0.00 3.46
588 590 0.687354 GAACACAGGCAGGGAGAGAA 59.313 55.000 0.00 0.00 0.00 2.87
593 595 2.741092 GACGAACACAGGCAGGGA 59.259 61.111 0.00 0.00 0.00 4.20
594 596 2.738521 CGACGAACACAGGCAGGG 60.739 66.667 0.00 0.00 0.00 4.45
604 606 2.074547 TCCAGAAACATCCGACGAAC 57.925 50.000 0.00 0.00 0.00 3.95
675 677 4.776322 CCCAAGCCACATCGCGGA 62.776 66.667 6.13 0.00 0.00 5.54
677 679 4.776322 TCCCCAAGCCACATCGCG 62.776 66.667 0.00 0.00 0.00 5.87
678 680 2.361104 TTCCCCAAGCCACATCGC 60.361 61.111 0.00 0.00 0.00 4.58
679 681 1.750399 CCTTCCCCAAGCCACATCG 60.750 63.158 0.00 0.00 0.00 3.84
681 683 0.712380 AATCCTTCCCCAAGCCACAT 59.288 50.000 0.00 0.00 0.00 3.21
682 684 0.486879 AAATCCTTCCCCAAGCCACA 59.513 50.000 0.00 0.00 0.00 4.17
683 685 2.025321 TCTAAATCCTTCCCCAAGCCAC 60.025 50.000 0.00 0.00 0.00 5.01
685 687 3.291584 CTTCTAAATCCTTCCCCAAGCC 58.708 50.000 0.00 0.00 0.00 4.35
775 999 1.815421 CCAGACATCGCGGGGAAAG 60.815 63.158 6.13 0.00 0.00 2.62
789 1013 1.198759 GCCTTGTAGGTGGGTCCAGA 61.199 60.000 0.00 0.00 37.80 3.86
825 1049 4.110482 GCTTATAATGGACTATACGCCCG 58.890 47.826 0.00 0.00 0.00 6.13
842 1066 2.179427 GCTCTTGGGTTTTGGGCTTAT 58.821 47.619 0.00 0.00 0.00 1.73
864 1090 0.109226 GGGCCTCGTACTATCATCGC 60.109 60.000 0.84 0.00 0.00 4.58
938 1164 1.078708 GATTTGGGGTCGGAAGCGA 60.079 57.895 0.00 0.00 0.00 4.93
987 1213 4.310022 TCTAAACCCAATTCGGTGGATT 57.690 40.909 0.00 0.00 41.65 3.01
988 1214 4.461198 GATCTAAACCCAATTCGGTGGAT 58.539 43.478 0.00 0.88 41.65 3.41
1013 1239 2.501610 GTCCATGGCCGTCTCTCC 59.498 66.667 6.96 0.00 0.00 3.71
1167 1638 2.835701 TTTAGCGCGCAGACAGGGAG 62.836 60.000 35.10 0.00 0.00 4.30
1177 1648 1.022982 AGGTTTAGGGTTTAGCGCGC 61.023 55.000 26.66 26.66 34.93 6.86
1332 1803 1.410882 AGGAGGCGCATCTAGAAAGAC 59.589 52.381 22.57 2.09 33.57 3.01
1466 1940 9.039870 GTCAGATTTATGAGTACCAATCTCAAG 57.960 37.037 0.00 0.00 43.65 3.02
1506 2847 8.736751 ATAGTTGCAATTTTACGGTGTAAAAG 57.263 30.769 16.93 8.33 31.03 2.27
1515 2857 7.302524 ACACCTACAATAGTTGCAATTTTACG 58.697 34.615 0.59 0.00 0.00 3.18
1518 2860 7.496747 ACAACACCTACAATAGTTGCAATTTT 58.503 30.769 0.59 0.00 43.74 1.82
1591 2933 1.202222 GCAGAAGGCACAATTCATCCG 60.202 52.381 0.00 0.00 43.97 4.18
1612 2954 2.496070 ACTACACACATCGGCACTATGT 59.504 45.455 0.00 0.00 45.87 2.29
1614 2956 3.887621 AACTACACACATCGGCACTAT 57.112 42.857 0.00 0.00 0.00 2.12
1617 2959 1.871039 ACAAACTACACACATCGGCAC 59.129 47.619 0.00 0.00 0.00 5.01
1618 2960 2.248280 ACAAACTACACACATCGGCA 57.752 45.000 0.00 0.00 0.00 5.69
1619 2961 3.120442 GGTTACAAACTACACACATCGGC 60.120 47.826 0.00 0.00 0.00 5.54
1620 2962 4.059511 TGGTTACAAACTACACACATCGG 58.940 43.478 0.00 0.00 0.00 4.18
1621 2963 4.508492 TGTGGTTACAAACTACACACATCG 59.492 41.667 5.05 0.00 46.10 3.84
1622 2964 5.994887 TGTGGTTACAAACTACACACATC 57.005 39.130 5.05 0.00 46.10 3.06
1629 2971 2.126467 TCGCGTGTGGTTACAAACTAC 58.874 47.619 5.77 0.00 42.51 2.73
1630 2972 2.396601 CTCGCGTGTGGTTACAAACTA 58.603 47.619 5.77 0.00 38.82 2.24
1631 2973 1.214367 CTCGCGTGTGGTTACAAACT 58.786 50.000 5.77 0.00 38.82 2.66
1632 2974 0.383860 GCTCGCGTGTGGTTACAAAC 60.384 55.000 5.77 0.00 38.82 2.93
1633 2975 0.810426 TGCTCGCGTGTGGTTACAAA 60.810 50.000 5.77 0.00 38.82 2.83
1634 2976 1.218875 CTGCTCGCGTGTGGTTACAA 61.219 55.000 5.77 0.00 38.82 2.41
1635 2977 1.663388 CTGCTCGCGTGTGGTTACA 60.663 57.895 5.77 0.00 0.00 2.41
1636 2978 0.387622 TACTGCTCGCGTGTGGTTAC 60.388 55.000 5.77 0.00 0.00 2.50
1637 2979 0.528924 ATACTGCTCGCGTGTGGTTA 59.471 50.000 5.77 0.00 0.00 2.85
1638 2980 1.014044 CATACTGCTCGCGTGTGGTT 61.014 55.000 5.77 0.00 0.00 3.67
1639 2981 1.446099 CATACTGCTCGCGTGTGGT 60.446 57.895 5.77 9.47 0.00 4.16
1640 2982 1.014044 AACATACTGCTCGCGTGTGG 61.014 55.000 5.77 3.48 0.00 4.17
1641 2983 0.790207 AAACATACTGCTCGCGTGTG 59.210 50.000 5.77 3.86 0.00 3.82
1642 2984 1.508632 AAAACATACTGCTCGCGTGT 58.491 45.000 5.77 0.00 0.00 4.49
1643 2985 3.122948 ACTTAAAACATACTGCTCGCGTG 59.877 43.478 5.77 4.44 0.00 5.34
1644 2986 3.323243 ACTTAAAACATACTGCTCGCGT 58.677 40.909 5.77 0.00 0.00 6.01
1645 2987 3.991605 ACTTAAAACATACTGCTCGCG 57.008 42.857 0.00 0.00 0.00 5.87
1646 2988 4.392138 AGGAACTTAAAACATACTGCTCGC 59.608 41.667 0.00 0.00 27.25 5.03
1677 3019 8.323854 CGTTCAGATTCATGTAACTCAATAGTG 58.676 37.037 0.00 0.00 35.62 2.74
1686 3028 6.299604 CAGTCAACGTTCAGATTCATGTAAC 58.700 40.000 0.00 0.00 0.00 2.50
1694 3036 3.243068 GCAAACCAGTCAACGTTCAGATT 60.243 43.478 0.00 0.00 0.00 2.40
1699 3041 1.400494 ACAGCAAACCAGTCAACGTTC 59.600 47.619 0.00 0.00 0.00 3.95
1703 3045 3.230743 ACAAACAGCAAACCAGTCAAC 57.769 42.857 0.00 0.00 0.00 3.18
1706 3048 4.546570 GGATTACAAACAGCAAACCAGTC 58.453 43.478 0.00 0.00 0.00 3.51
1707 3049 3.320826 GGGATTACAAACAGCAAACCAGT 59.679 43.478 0.00 0.00 0.00 4.00
1708 3050 3.611530 CGGGATTACAAACAGCAAACCAG 60.612 47.826 0.00 0.00 0.00 4.00
1711 3053 2.924880 GCCGGGATTACAAACAGCAAAC 60.925 50.000 2.18 0.00 0.00 2.93
1712 3054 1.271102 GCCGGGATTACAAACAGCAAA 59.729 47.619 2.18 0.00 0.00 3.68
1714 3056 0.250945 TGCCGGGATTACAAACAGCA 60.251 50.000 2.18 0.00 0.00 4.41
1715 3057 1.102978 ATGCCGGGATTACAAACAGC 58.897 50.000 0.92 0.00 0.00 4.40
1729 3075 3.689161 CCAGATCTCTAGAGTCTATGCCG 59.311 52.174 19.21 8.86 0.00 5.69
1758 3104 8.011844 GTGCATATCCTGGACATAGTCATATA 57.988 38.462 0.00 0.00 44.95 0.86
1760 3106 6.286240 GTGCATATCCTGGACATAGTCATA 57.714 41.667 0.00 0.00 44.95 2.15
1761 3107 5.157940 GTGCATATCCTGGACATAGTCAT 57.842 43.478 0.00 0.00 44.95 3.06
1762 3108 4.607293 GTGCATATCCTGGACATAGTCA 57.393 45.455 0.00 0.00 44.95 3.41
1769 3126 4.142609 TCTTGAAGTGCATATCCTGGAC 57.857 45.455 0.00 0.00 45.88 4.02
1806 3163 3.804873 GGCGGCAGTTTAAAATTGAAACA 59.195 39.130 3.07 0.00 38.91 2.83
1807 3164 3.804873 TGGCGGCAGTTTAAAATTGAAAC 59.195 39.130 7.97 0.00 37.11 2.78
1868 3225 4.946160 AAGAACAAGGGTCCCAATATGA 57.054 40.909 11.55 0.00 0.00 2.15
1873 3232 3.204382 AGAGAAAAGAACAAGGGTCCCAA 59.796 43.478 11.55 0.00 0.00 4.12
1874 3233 2.783510 AGAGAAAAGAACAAGGGTCCCA 59.216 45.455 11.55 0.00 0.00 4.37
1913 3280 4.202503 ACAAGGAGCAGAAAGATTGGAGAA 60.203 41.667 0.00 0.00 0.00 2.87
1928 3295 8.894768 AATATGAAGTAATCAGTACAAGGAGC 57.105 34.615 0.00 0.00 42.53 4.70
1974 3341 6.899393 TCTTCATTGCACAGACCTAAATTT 57.101 33.333 0.00 0.00 0.00 1.82
2005 3372 5.178623 TCAACTACATAAGCAAGAAACCACG 59.821 40.000 0.00 0.00 0.00 4.94
2011 3378 7.602644 CCACTACTTCAACTACATAAGCAAGAA 59.397 37.037 0.00 0.00 0.00 2.52
2020 3387 5.420725 TCATGCCACTACTTCAACTACAT 57.579 39.130 0.00 0.00 0.00 2.29
2028 3395 4.034510 GCTACACAATCATGCCACTACTTC 59.965 45.833 0.00 0.00 0.00 3.01
2040 3407 2.794103 ACAAGGCATGCTACACAATCA 58.206 42.857 18.92 0.00 0.00 2.57
2041 3408 5.505173 AATACAAGGCATGCTACACAATC 57.495 39.130 18.92 0.00 0.00 2.67
2049 3416 6.780457 ACAAAGATTAATACAAGGCATGCT 57.220 33.333 18.92 0.00 0.00 3.79
2066 3433 9.638239 GAATAAGTATTCATGCCAAAACAAAGA 57.362 29.630 6.24 0.00 41.25 2.52
2067 3434 8.586273 CGAATAAGTATTCATGCCAAAACAAAG 58.414 33.333 10.78 0.00 41.59 2.77
2070 3437 7.026562 CACGAATAAGTATTCATGCCAAAACA 58.973 34.615 10.78 0.00 41.59 2.83
2071 3438 7.027161 ACACGAATAAGTATTCATGCCAAAAC 58.973 34.615 6.96 0.00 38.91 2.43
2072 3439 7.120579 AGACACGAATAAGTATTCATGCCAAAA 59.879 33.333 6.96 0.00 38.91 2.44
2113 3480 4.024048 CCATAACATTTATCCCACACTCGC 60.024 45.833 0.00 0.00 0.00 5.03
2151 3518 6.694447 AGCATATGCATAACCATGGAAAATC 58.306 36.000 28.62 4.95 45.16 2.17
2174 3541 5.049474 GTCCAAAATTAGCCCAAAAAGCAAG 60.049 40.000 0.00 0.00 0.00 4.01
2178 3545 7.509141 AAATGTCCAAAATTAGCCCAAAAAG 57.491 32.000 0.00 0.00 0.00 2.27
2248 3616 7.655328 CCATCACAAATAAAAAGGCAGTAAACA 59.345 33.333 0.00 0.00 0.00 2.83
2288 3656 7.700234 CACATTGTGTTAGAAAACTTTGCTGTA 59.300 33.333 8.69 0.00 36.51 2.74
2336 3705 3.019564 AGCACATAAAAGATGAGGCACC 58.980 45.455 0.00 0.00 0.00 5.01
2343 3712 6.372659 AGACAACTGGTAGCACATAAAAGATG 59.627 38.462 0.00 0.00 0.00 2.90
2352 3721 3.244387 TGCATAAGACAACTGGTAGCACA 60.244 43.478 0.00 0.00 0.00 4.57
2353 3722 3.125316 GTGCATAAGACAACTGGTAGCAC 59.875 47.826 0.00 0.00 42.21 4.40
2375 3744 8.307582 TCCTCCTACAGAAGAAAATAGGTAAG 57.692 38.462 0.00 0.00 36.39 2.34
2380 3749 6.928492 GCATCTCCTCCTACAGAAGAAAATAG 59.072 42.308 0.00 0.00 0.00 1.73
2390 3759 2.809665 GCATTGGCATCTCCTCCTACAG 60.810 54.545 0.00 0.00 40.72 2.74
2430 3799 1.675641 GCGGGCATCAACCTGTTCT 60.676 57.895 0.00 0.00 38.45 3.01
2433 3802 2.045926 GAGCGGGCATCAACCTGT 60.046 61.111 0.00 0.00 38.45 4.00
2439 3808 1.065491 ACATAAACAGAGCGGGCATCA 60.065 47.619 0.00 0.00 0.00 3.07
2445 3814 4.082787 ACATTTCCAACATAAACAGAGCGG 60.083 41.667 0.00 0.00 0.00 5.52
2635 4017 5.542616 TTCGACTAACTAGCAGTCAGTAC 57.457 43.478 19.65 0.00 42.12 2.73
2688 4070 3.621715 CAGACCTTTTGGCGTAAGTATCC 59.378 47.826 0.00 0.00 45.59 2.59
2721 4103 9.903682 ATTGAACATTTGAACATAAGAGAAGTG 57.096 29.630 0.00 0.00 0.00 3.16
2908 4291 7.700656 ACACTAATCTAAACAACACTGCAAAAC 59.299 33.333 0.00 0.00 0.00 2.43
2987 4372 9.981114 GGGGACATTCCAATATAAAAACAATAG 57.019 33.333 0.00 0.00 38.64 1.73
2992 4377 6.382859 ACAGGGGGACATTCCAATATAAAAAC 59.617 38.462 0.00 0.00 38.64 2.43
3000 4385 2.003072 AGAACAGGGGGACATTCCAAT 58.997 47.619 0.00 0.00 38.64 3.16
3012 4397 2.636830 CACCAGAGCATTAGAACAGGG 58.363 52.381 0.00 0.00 0.00 4.45
3013 4398 2.012673 GCACCAGAGCATTAGAACAGG 58.987 52.381 0.00 0.00 0.00 4.00
3042 4427 0.448990 CCTGCGACCATCACATTGTG 59.551 55.000 10.64 10.64 34.45 3.33
3229 4640 3.858135 TCTGTCTTCAGGGAGGTAACTT 58.142 45.455 0.00 0.00 44.60 2.66
3247 4658 6.313411 CAGCAGATTTCTAGACTTCCTTTCTG 59.687 42.308 0.00 0.00 33.07 3.02
3248 4659 6.405538 CAGCAGATTTCTAGACTTCCTTTCT 58.594 40.000 0.00 0.00 0.00 2.52
3249 4660 5.064579 GCAGCAGATTTCTAGACTTCCTTTC 59.935 44.000 0.00 0.00 0.00 2.62
3273 4684 0.795085 CAAGTCTCAAGCGCCAAGAG 59.205 55.000 2.29 9.55 0.00 2.85
3274 4685 0.603707 CCAAGTCTCAAGCGCCAAGA 60.604 55.000 2.29 1.04 0.00 3.02
3276 4687 0.884704 GTCCAAGTCTCAAGCGCCAA 60.885 55.000 2.29 0.00 0.00 4.52
3328 4749 4.497251 CGTTCAGATGATTCTCACTGTACG 59.503 45.833 16.06 16.06 39.69 3.67
3331 4752 3.259374 ACCGTTCAGATGATTCTCACTGT 59.741 43.478 0.00 0.00 31.83 3.55
3344 4765 3.635373 GTCATACCTATCCACCGTTCAGA 59.365 47.826 0.00 0.00 0.00 3.27
3404 4825 4.024556 ACATTCAGAGTGAGCAAAAGAACG 60.025 41.667 0.00 0.00 0.00 3.95
3418 4839 0.520404 AAGCAAGCGCACATTCAGAG 59.480 50.000 11.47 0.00 42.27 3.35
3439 4860 1.187087 GAAAAGAGGGAGAGGAGCGA 58.813 55.000 0.00 0.00 0.00 4.93
3440 4861 0.898320 TGAAAAGAGGGAGAGGAGCG 59.102 55.000 0.00 0.00 0.00 5.03
3484 4918 3.385755 GGAGCAGCATGAATATGGGTTTT 59.614 43.478 0.00 0.00 39.69 2.43
3512 4946 5.833082 TCAACGATAGACCATAAAGAGAGC 58.167 41.667 0.00 0.00 41.38 4.09
3530 4964 6.089551 ACATCACGTTTAGAGAAAGATCAACG 59.910 38.462 8.58 8.58 42.05 4.10
3541 4975 4.325741 CAGAAGCAGACATCACGTTTAGAG 59.674 45.833 0.00 0.00 0.00 2.43
3588 5022 6.038356 AGTTACATGTAATCCTCGTAAACCG 58.962 40.000 20.72 0.00 38.13 4.44
3594 5028 7.438459 GCATTTAGAGTTACATGTAATCCTCGT 59.562 37.037 20.72 14.10 0.00 4.18
3653 5087 8.449397 GCAATTCCATATATAAACTCAGCTCTG 58.551 37.037 0.00 0.00 0.00 3.35
3656 5090 8.159447 TCTGCAATTCCATATATAAACTCAGCT 58.841 33.333 0.00 0.00 0.00 4.24
3661 5096 9.851686 TGTCTTCTGCAATTCCATATATAAACT 57.148 29.630 0.00 0.00 0.00 2.66
3691 5126 9.959749 CCTCAACAGCATTTAGTTAAAGTAAAA 57.040 29.630 0.00 0.00 0.00 1.52
3723 5158 6.157123 ACTCCCTTCAAGAATCTTAAGGTAGG 59.843 42.308 19.87 11.34 37.40 3.18
3724 5159 7.189079 ACTCCCTTCAAGAATCTTAAGGTAG 57.811 40.000 19.87 17.60 37.40 3.18
3760 5195 9.750882 GTTAGTATCAACGTTTGGTTAATCTTC 57.249 33.333 0.00 0.00 36.49 2.87
3781 5216 6.599638 AGCAGTTCAAGAAAAGTTCTGTTAGT 59.400 34.615 0.00 0.00 40.59 2.24
3840 5275 8.517062 AGATGCAACTTCTATATTCTTTTGCT 57.483 30.769 0.00 0.00 38.89 3.91
3841 5276 9.230932 GAAGATGCAACTTCTATATTCTTTTGC 57.769 33.333 24.84 0.00 41.83 3.68
3844 5279 8.897752 GTGGAAGATGCAACTTCTATATTCTTT 58.102 33.333 28.94 0.00 43.76 2.52
3851 5286 3.935203 CGTGTGGAAGATGCAACTTCTAT 59.065 43.478 28.94 1.19 43.76 1.98
3860 5295 0.593128 AACTTGCGTGTGGAAGATGC 59.407 50.000 3.49 0.00 45.57 3.91
3921 5356 6.148811 ACACATGGAGAAGTTGTAATTTACGG 59.851 38.462 0.00 0.00 0.00 4.02
3923 5358 8.094798 TGACACATGGAGAAGTTGTAATTTAC 57.905 34.615 0.00 0.00 0.00 2.01
3927 5362 5.124457 GCATGACACATGGAGAAGTTGTAAT 59.876 40.000 12.56 0.00 0.00 1.89
3930 5365 2.816087 GCATGACACATGGAGAAGTTGT 59.184 45.455 12.56 0.00 0.00 3.32
3931 5366 2.815503 TGCATGACACATGGAGAAGTTG 59.184 45.455 12.56 0.00 0.00 3.16
3937 5372 1.474879 TGCATTGCATGACACATGGAG 59.525 47.619 7.38 2.08 31.71 3.86
3950 5385 6.183359 CGGTAAAAGTAAAAGTCATGCATTGC 60.183 38.462 0.00 0.46 0.00 3.56
3951 5386 6.861055 ACGGTAAAAGTAAAAGTCATGCATTG 59.139 34.615 0.00 0.00 0.00 2.82
3952 5387 6.977213 ACGGTAAAAGTAAAAGTCATGCATT 58.023 32.000 0.00 0.00 0.00 3.56
3953 5388 6.569179 ACGGTAAAAGTAAAAGTCATGCAT 57.431 33.333 0.00 0.00 0.00 3.96
3954 5389 6.261381 AGAACGGTAAAAGTAAAAGTCATGCA 59.739 34.615 0.00 0.00 0.00 3.96
3955 5390 6.665465 AGAACGGTAAAAGTAAAAGTCATGC 58.335 36.000 0.00 0.00 0.00 4.06
3959 5401 7.704789 TCTGAGAACGGTAAAAGTAAAAGTC 57.295 36.000 0.00 0.00 0.00 3.01
3975 5417 8.821894 GTGGATGATAGTTAACAATCTGAGAAC 58.178 37.037 8.61 0.00 0.00 3.01
4020 5462 5.806654 ACATTTGTGGGACTATGCTTTTT 57.193 34.783 0.00 0.00 0.00 1.94
4029 5471 2.815589 GCAGAGGAACATTTGTGGGACT 60.816 50.000 0.00 0.00 0.00 3.85
4043 5485 6.040955 AGTCATTAAGTATGATTCGCAGAGGA 59.959 38.462 0.00 0.00 44.75 3.71
4045 5487 7.651304 AGAAGTCATTAAGTATGATTCGCAGAG 59.349 37.037 0.00 0.00 44.75 3.35
4046 5488 7.492524 AGAAGTCATTAAGTATGATTCGCAGA 58.507 34.615 0.00 0.00 44.75 4.26
4047 5489 7.436376 TGAGAAGTCATTAAGTATGATTCGCAG 59.564 37.037 0.00 0.00 44.75 5.18
4049 5491 7.700322 TGAGAAGTCATTAAGTATGATTCGC 57.300 36.000 0.00 0.00 44.75 4.70
4050 5492 9.689976 AGATGAGAAGTCATTAAGTATGATTCG 57.310 33.333 0.00 0.00 43.92 3.34
4062 5504 7.016072 CCATAGGGAAGTAGATGAGAAGTCATT 59.984 40.741 0.00 0.00 39.07 2.57
4063 5505 6.496565 CCATAGGGAAGTAGATGAGAAGTCAT 59.503 42.308 0.00 0.00 40.79 3.06
4113 5869 4.730657 CCGTAAGTAGCGGTATCCAATAG 58.269 47.826 0.00 0.00 43.84 1.73
4135 5894 2.991866 GGTACAACAGAAACCTCGCTAC 59.008 50.000 0.00 0.00 0.00 3.58
4139 5898 3.724374 TGAAGGTACAACAGAAACCTCG 58.276 45.455 0.00 0.00 42.86 4.63
4149 5908 8.696410 TCAAAAGTCAAAATTGAAGGTACAAC 57.304 30.769 0.00 0.00 39.21 3.32
4201 5976 7.240414 TCGCTGATATAGAGATTAGTCGATG 57.760 40.000 0.00 0.00 29.69 3.84
4204 5979 8.360325 ACTATCGCTGATATAGAGATTAGTCG 57.640 38.462 0.00 0.00 42.38 4.18
4227 6002 8.957466 GGTTAAATTATACAGCCAGAGAAAACT 58.043 33.333 0.00 0.00 0.00 2.66
4236 6011 6.335781 AGGGAAGGTTAAATTATACAGCCA 57.664 37.500 0.00 0.00 0.00 4.75
4237 6012 5.469084 CGAGGGAAGGTTAAATTATACAGCC 59.531 44.000 0.00 0.00 0.00 4.85
4238 6013 5.469084 CCGAGGGAAGGTTAAATTATACAGC 59.531 44.000 0.00 0.00 0.00 4.40
4239 6014 6.589135 ACCGAGGGAAGGTTAAATTATACAG 58.411 40.000 0.00 0.00 39.29 2.74
4240 6015 6.564557 ACCGAGGGAAGGTTAAATTATACA 57.435 37.500 0.00 0.00 39.29 2.29
4276 6056 6.985645 ACAAGCTCAAGATTAAAACAAATGCA 59.014 30.769 0.00 0.00 0.00 3.96
4277 6057 7.042523 ACACAAGCTCAAGATTAAAACAAATGC 60.043 33.333 0.00 0.00 0.00 3.56
4309 6089 8.594881 AATGACGAATATAGATGGTCTTTGAC 57.405 34.615 0.00 0.00 0.00 3.18
4345 6125 2.376695 AGATATTTCCGGACGGAGGA 57.623 50.000 13.64 7.39 46.06 3.71
4350 6130 2.291465 TGGACGTAGATATTTCCGGACG 59.709 50.000 1.83 4.83 36.42 4.79
4353 6133 5.539048 AGAAATGGACGTAGATATTTCCGG 58.461 41.667 16.23 0.00 39.27 5.14
4355 6135 6.522054 TGGAGAAATGGACGTAGATATTTCC 58.478 40.000 16.23 8.86 39.27 3.13
4356 6136 6.146347 GCTGGAGAAATGGACGTAGATATTTC 59.854 42.308 13.81 13.81 38.93 2.17
4357 6137 5.992217 GCTGGAGAAATGGACGTAGATATTT 59.008 40.000 0.00 0.00 0.00 1.40
4361 6141 2.766263 TGCTGGAGAAATGGACGTAGAT 59.234 45.455 0.00 0.00 0.00 1.98
4363 6143 2.544685 CTGCTGGAGAAATGGACGTAG 58.455 52.381 0.00 0.00 0.00 3.51
4364 6144 1.207089 CCTGCTGGAGAAATGGACGTA 59.793 52.381 2.92 0.00 34.57 3.57
4365 6145 0.036010 CCTGCTGGAGAAATGGACGT 60.036 55.000 2.92 0.00 34.57 4.34
4366 6146 0.036010 ACCTGCTGGAGAAATGGACG 60.036 55.000 17.64 0.00 37.04 4.79
4367 6147 3.567478 ATACCTGCTGGAGAAATGGAC 57.433 47.619 17.64 0.00 37.04 4.02
4368 6148 4.526970 GAAATACCTGCTGGAGAAATGGA 58.473 43.478 17.64 0.00 37.04 3.41
4371 6151 3.545703 CGGAAATACCTGCTGGAGAAAT 58.454 45.455 17.64 1.54 37.04 2.17
4372 6152 2.355716 CCGGAAATACCTGCTGGAGAAA 60.356 50.000 17.64 0.00 37.04 2.52
4373 6153 1.209504 CCGGAAATACCTGCTGGAGAA 59.790 52.381 17.64 1.62 37.04 2.87
4374 6154 0.830648 CCGGAAATACCTGCTGGAGA 59.169 55.000 17.64 4.02 37.04 3.71
4377 6157 0.810031 CGTCCGGAAATACCTGCTGG 60.810 60.000 5.23 8.29 39.83 4.85
4378 6158 0.810031 CCGTCCGGAAATACCTGCTG 60.810 60.000 5.23 0.00 37.50 4.41
4379 6159 0.974010 TCCGTCCGGAAATACCTGCT 60.974 55.000 5.23 0.00 42.05 4.24
4380 6160 0.529992 CTCCGTCCGGAAATACCTGC 60.530 60.000 5.23 0.00 44.66 4.85
4381 6161 0.104304 CCTCCGTCCGGAAATACCTG 59.896 60.000 5.23 0.00 44.66 4.00
4384 6164 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4386 6166 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4388 6168 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
4389 6169 0.109342 GTATACTCCCTCCGTCCGGA 59.891 60.000 0.00 0.00 42.90 5.14
4390 6170 0.179009 TGTATACTCCCTCCGTCCGG 60.179 60.000 4.17 0.00 0.00 5.14
4391 6171 1.236628 CTGTATACTCCCTCCGTCCG 58.763 60.000 4.17 0.00 0.00 4.79
4392 6172 0.960286 GCTGTATACTCCCTCCGTCC 59.040 60.000 4.17 0.00 0.00 4.79
4393 6173 1.609555 CAGCTGTATACTCCCTCCGTC 59.390 57.143 5.25 0.00 0.00 4.79
4394 6174 1.063867 ACAGCTGTATACTCCCTCCGT 60.064 52.381 20.16 0.00 0.00 4.69
4395 6175 1.693627 ACAGCTGTATACTCCCTCCG 58.306 55.000 20.16 0.00 0.00 4.63
4396 6176 3.006003 GCTTACAGCTGTATACTCCCTCC 59.994 52.174 26.54 4.81 38.45 4.30
4397 6177 3.637229 TGCTTACAGCTGTATACTCCCTC 59.363 47.826 26.54 10.29 42.97 4.30
4399 6179 3.983741 CTGCTTACAGCTGTATACTCCC 58.016 50.000 26.54 11.84 42.97 4.30
4483 6340 7.421530 TCAGCTAAGAATTTACTGACACAAC 57.578 36.000 0.00 0.00 32.65 3.32
4518 6377 8.884124 ACTGGATGGAGATGAAAGATTAAAAA 57.116 30.769 0.00 0.00 0.00 1.94
4519 6378 8.742777 CAACTGGATGGAGATGAAAGATTAAAA 58.257 33.333 0.00 0.00 0.00 1.52
4533 6392 5.972107 AAACAAATCTCAACTGGATGGAG 57.028 39.130 0.00 0.00 0.00 3.86
4539 6398 9.918630 AATATCAGAAAAACAAATCTCAACTGG 57.081 29.630 0.00 0.00 0.00 4.00
4693 6552 5.473504 GGCTTCTTGTTCTAGAAATTCCACA 59.526 40.000 6.78 0.00 33.96 4.17
4806 6665 2.897969 GAGAGGTGGTACTGGAAACTCA 59.102 50.000 0.00 0.00 0.00 3.41
4820 6679 9.442047 ACTCAAAGACATTATTAAAGAGAGGTG 57.558 33.333 0.00 0.00 0.00 4.00
4845 6704 9.313118 ACAACAGAATGAAGGTTGATTTTAAAC 57.687 29.630 10.35 0.00 43.41 2.01
4874 6733 1.949525 CTCTTTGGTGACACCTGTTGG 59.050 52.381 24.81 10.80 42.67 3.77
4946 6805 5.965033 ATGATCTATAAGGGTAGGCATGG 57.035 43.478 0.00 0.00 0.00 3.66
5068 6927 7.449704 ACTCTCCTGAAAATAGCACAAAAAGAT 59.550 33.333 0.00 0.00 0.00 2.40
5070 6929 6.974965 ACTCTCCTGAAAATAGCACAAAAAG 58.025 36.000 0.00 0.00 0.00 2.27
5071 6930 6.959639 ACTCTCCTGAAAATAGCACAAAAA 57.040 33.333 0.00 0.00 0.00 1.94
5139 6999 0.462759 CTTCATGGAAGCCTCGTCCC 60.463 60.000 0.00 0.00 32.78 4.46
5360 7221 2.645802 GGGCCAACATAATAACCACGA 58.354 47.619 4.39 0.00 0.00 4.35
5453 7361 3.685139 TTCTTCAGAGATCAAAGCGGT 57.315 42.857 0.00 0.00 0.00 5.68
5456 7364 5.349817 TGTCGATTTCTTCAGAGATCAAAGC 59.650 40.000 7.82 0.00 35.95 3.51
5517 7425 2.615912 GTTAGATGCAGATCCAACAGCC 59.384 50.000 0.00 0.00 32.29 4.85
5591 7499 7.782644 ACAGAGATAGGAAGACTAACATTAGCT 59.217 37.037 0.00 0.00 34.79 3.32
5601 7509 7.334858 GGATTTCAAACAGAGATAGGAAGACT 58.665 38.462 0.00 0.00 0.00 3.24
5610 7518 5.551233 TGTTCTCGGATTTCAAACAGAGAT 58.449 37.500 0.00 0.00 37.25 2.75
5611 7519 4.956085 TGTTCTCGGATTTCAAACAGAGA 58.044 39.130 0.00 0.00 36.09 3.10
5612 7520 4.377841 GCTGTTCTCGGATTTCAAACAGAG 60.378 45.833 15.55 0.00 46.09 3.35
5625 7535 2.046892 CCCCAGTGCTGTTCTCGG 60.047 66.667 0.00 0.00 0.00 4.63
5632 7542 1.000274 GTAAAAAGTGCCCCAGTGCTG 60.000 52.381 0.00 0.00 0.00 4.41
5677 7605 6.629739 CGGCTAGGGTTTATAGGCTTTATAGG 60.630 46.154 0.00 0.00 42.13 2.57
5685 7613 1.690352 TGTCGGCTAGGGTTTATAGGC 59.310 52.381 0.00 0.00 41.19 3.93
5686 7614 3.323979 ACATGTCGGCTAGGGTTTATAGG 59.676 47.826 0.00 0.00 0.00 2.57
5687 7615 4.602340 ACATGTCGGCTAGGGTTTATAG 57.398 45.455 0.00 0.00 0.00 1.31
5702 7672 3.320826 ACTTAGGCCAACCAAAACATGTC 59.679 43.478 5.01 0.00 39.06 3.06
5703 7673 3.069443 CACTTAGGCCAACCAAAACATGT 59.931 43.478 5.01 0.00 39.06 3.21
5710 7680 2.889170 TATGCACTTAGGCCAACCAA 57.111 45.000 5.01 0.00 39.06 3.67
5727 7697 7.754027 CGAGGAATTTACGACGAATTAGGATAT 59.246 37.037 0.00 0.00 0.00 1.63
5740 7710 3.807622 GGATGATTGCGAGGAATTTACGA 59.192 43.478 0.00 0.00 0.00 3.43
5742 7712 3.882888 TGGGATGATTGCGAGGAATTTAC 59.117 43.478 0.00 0.00 0.00 2.01
5781 7751 6.207417 GGGAGAAATTCAGTCAAAATCACTCA 59.793 38.462 0.00 0.00 0.00 3.41
5812 7782 2.803451 CGCTACTAGCCTGAAGAACTG 58.197 52.381 2.32 0.00 38.18 3.16
5853 7830 1.733041 CATGGTGAGTCGAACGCGT 60.733 57.895 5.58 5.58 38.98 6.01
5898 7875 4.213270 TGGCTTCAACTTCAACTTGTATCG 59.787 41.667 0.00 0.00 0.00 2.92
5973 8063 4.669728 CGACTAGCTATTGCGTACTACAAC 59.330 45.833 0.00 0.00 45.42 3.32
5985 8080 5.600908 GAGAATCGACTCGACTAGCTATT 57.399 43.478 2.53 0.00 39.18 1.73
6010 8105 2.915659 ACGAGAGAACCCCACGCA 60.916 61.111 0.00 0.00 0.00 5.24
6016 8111 4.415332 TCGCGCACGAGAGAACCC 62.415 66.667 8.75 0.00 45.12 4.11
6055 8151 2.715749 TTAGGAGCCACATGGTGATG 57.284 50.000 0.00 0.00 35.23 3.07
6093 8189 3.074390 ACCCTTGAACTTGATCATGTGGA 59.926 43.478 14.42 2.50 0.00 4.02
6094 8190 3.192001 CACCCTTGAACTTGATCATGTGG 59.808 47.826 14.42 12.69 0.00 4.17
6095 8191 3.366679 GCACCCTTGAACTTGATCATGTG 60.367 47.826 14.42 4.37 31.89 3.21
6096 8192 2.821969 GCACCCTTGAACTTGATCATGT 59.178 45.455 8.37 8.37 0.00 3.21
6097 8193 2.165030 GGCACCCTTGAACTTGATCATG 59.835 50.000 7.04 7.04 0.00 3.07
6098 8194 2.225091 TGGCACCCTTGAACTTGATCAT 60.225 45.455 0.00 0.00 0.00 2.45
6115 8211 4.128388 TCGAGCTTCGCGATGGCA 62.128 61.111 27.60 11.51 40.21 4.92
6212 8308 1.278985 CATTCTGGTGAGGTGGCTGTA 59.721 52.381 0.00 0.00 0.00 2.74
6365 8461 1.948611 GCTGCCCACGTCCAAATAGAA 60.949 52.381 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.