Multiple sequence alignment - TraesCS6A01G316100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G316100 chr6A 100.000 8138 0 0 908 9045 552746511 552738374 0.000000e+00 15029.0
1 TraesCS6A01G316100 chr6A 100.000 532 0 0 1 532 552747418 552746887 0.000000e+00 983.0
2 TraesCS6A01G316100 chr6A 90.672 268 23 1 5306 5571 555243516 555243249 1.160000e-93 355.0
3 TraesCS6A01G316100 chr6A 90.698 86 5 2 4395 4478 509279058 509279142 2.780000e-20 111.0
4 TraesCS6A01G316100 chr6A 91.250 80 4 3 4394 4471 19125081 19125159 1.290000e-18 106.0
5 TraesCS6A01G316100 chr6A 100.000 28 0 0 9398 9425 552738021 552737994 1.700000e-02 52.8
6 TraesCS6A01G316100 chr6D 96.558 3486 63 15 1253 4728 406208860 406205422 0.000000e+00 5720.0
7 TraesCS6A01G316100 chr6D 96.686 3440 86 13 5569 8992 406204754 406201327 0.000000e+00 5696.0
8 TraesCS6A01G316100 chr6D 97.907 669 13 1 4778 5445 406205421 406204753 0.000000e+00 1157.0
9 TraesCS6A01G316100 chr6D 90.736 421 32 5 112 532 406209734 406209321 1.070000e-153 555.0
10 TraesCS6A01G316100 chr6D 95.498 311 9 3 908 1217 406209308 406209002 8.500000e-135 492.0
11 TraesCS6A01G316100 chr6D 93.590 78 2 2 4394 4469 469492338 469492414 7.740000e-21 113.0
12 TraesCS6A01G316100 chr6D 93.590 78 2 2 4394 4469 469511146 469511222 7.740000e-21 113.0
13 TraesCS6A01G316100 chr6D 90.698 86 5 2 4395 4478 368365285 368365369 2.780000e-20 111.0
14 TraesCS6A01G316100 chr6D 88.750 80 6 3 4394 4471 18902639 18902717 2.800000e-15 95.3
15 TraesCS6A01G316100 chr6D 86.207 87 8 2 4386 4468 370795136 370795222 3.620000e-14 91.6
16 TraesCS6A01G316100 chr6D 90.411 73 2 3 4395 4465 377341671 377341740 3.620000e-14 91.6
17 TraesCS6A01G316100 chr6B 96.689 3352 87 16 5588 8922 610236880 610233536 0.000000e+00 5553.0
18 TraesCS6A01G316100 chr6B 94.379 1708 61 13 2890 4593 610239141 610237465 0.000000e+00 2590.0
19 TraesCS6A01G316100 chr6B 92.172 1418 79 17 981 2375 610241527 610240119 0.000000e+00 1975.0
20 TraesCS6A01G316100 chr6B 96.616 591 18 2 4716 5305 610237467 610236878 0.000000e+00 979.0
21 TraesCS6A01G316100 chr6B 95.991 449 12 2 2378 2822 610239631 610239185 0.000000e+00 725.0
22 TraesCS6A01G316100 chr6B 95.312 192 5 2 262 453 610241915 610241728 1.540000e-77 302.0
23 TraesCS6A01G316100 chr6B 90.698 86 5 2 4395 4478 553057202 553057118 2.780000e-20 111.0
24 TraesCS6A01G316100 chrUn 100.000 394 0 0 6629 7022 479431840 479432233 0.000000e+00 728.0
25 TraesCS6A01G316100 chrUn 100.000 388 0 0 6415 6802 480291180 480290793 0.000000e+00 717.0
26 TraesCS6A01G316100 chrUn 90.667 75 4 2 4394 4466 31324797 31324870 7.790000e-16 97.1
27 TraesCS6A01G316100 chrUn 89.189 74 5 2 4395 4465 303368581 303368654 1.300000e-13 89.8
28 TraesCS6A01G316100 chrUn 89.189 74 5 2 4395 4465 303430956 303431029 1.300000e-13 89.8
29 TraesCS6A01G316100 chrUn 86.076 79 5 4 4396 4472 10254732 10254806 7.850000e-11 80.5
30 TraesCS6A01G316100 chrUn 87.671 73 4 3 4394 4464 10254801 10254732 7.850000e-11 80.5
31 TraesCS6A01G316100 chrUn 86.301 73 7 3 4395 4465 41223908 41223837 1.010000e-09 76.8
32 TraesCS6A01G316100 chrUn 86.301 73 7 3 4395 4465 380168716 380168645 1.010000e-09 76.8
33 TraesCS6A01G316100 chrUn 86.301 73 7 3 4395 4465 442634266 442634195 1.010000e-09 76.8
34 TraesCS6A01G316100 chrUn 85.135 74 6 5 4395 4465 41223837 41223908 4.720000e-08 71.3
35 TraesCS6A01G316100 chr5B 91.749 303 17 6 5289 5589 139340705 139340409 1.890000e-111 414.0
36 TraesCS6A01G316100 chr5B 88.850 287 30 2 5300 5584 8354157 8353871 1.510000e-92 351.0
37 TraesCS6A01G316100 chr5B 86.824 296 31 6 5301 5590 360621291 360621584 3.280000e-84 324.0
38 TraesCS6A01G316100 chr5B 96.078 51 2 0 4658 4708 372163960 372164010 6.070000e-12 84.2
39 TraesCS6A01G316100 chr5B 93.878 49 3 0 4658 4706 122556904 122556952 3.650000e-09 75.0
40 TraesCS6A01G316100 chr1B 91.809 293 21 2 5300 5590 335974853 335975144 1.140000e-108 405.0
41 TraesCS6A01G316100 chr1B 88.824 170 9 4 3277 3443 685292006 685291844 5.770000e-47 200.0
42 TraesCS6A01G316100 chr3B 87.797 295 26 8 5303 5589 370766317 370766609 4.220000e-88 337.0
43 TraesCS6A01G316100 chr7B 87.458 295 29 6 5301 5589 153674791 153674499 5.450000e-87 333.0
44 TraesCS6A01G316100 chr7B 87.458 295 29 6 5301 5589 388780426 388780718 5.450000e-87 333.0
45 TraesCS6A01G316100 chr7B 87.372 293 31 5 5303 5590 448005110 448005401 1.960000e-86 331.0
46 TraesCS6A01G316100 chr2D 87.458 295 28 7 5301 5589 462864607 462864898 1.960000e-86 331.0
47 TraesCS6A01G316100 chr2D 94.595 74 1 2 4395 4466 376701261 376701189 2.780000e-20 111.0
48 TraesCS6A01G316100 chr2D 95.522 67 2 1 2825 2890 382175294 382175228 1.290000e-18 106.0
49 TraesCS6A01G316100 chr4B 87.119 295 29 7 5301 5589 134036884 134037175 9.130000e-85 326.0
50 TraesCS6A01G316100 chr4B 91.358 81 4 2 4388 4465 269174070 269174150 3.600000e-19 108.0
51 TraesCS6A01G316100 chr1A 90.278 216 11 4 3230 3443 591151470 591151263 3.350000e-69 274.0
52 TraesCS6A01G316100 chr1D 89.815 216 16 3 3230 3445 492643865 492643656 1.210000e-68 272.0
53 TraesCS6A01G316100 chr1D 89.773 88 3 6 4393 4478 257365372 257365455 3.600000e-19 108.0
54 TraesCS6A01G316100 chr1D 91.892 74 3 2 4395 4465 47323511 47323438 6.020000e-17 100.0
55 TraesCS6A01G316100 chr1D 100.000 45 0 0 3182 3226 492644073 492644029 6.070000e-12 84.2
56 TraesCS6A01G316100 chr1D 95.918 49 2 0 4658 4706 397109271 397109223 7.850000e-11 80.5
57 TraesCS6A01G316100 chr2A 91.765 85 3 3 4389 4470 704774899 704774816 2.150000e-21 115.0
58 TraesCS6A01G316100 chr7D 94.521 73 2 2 4404 4475 447760446 447760517 2.780000e-20 111.0
59 TraesCS6A01G316100 chr4D 90.361 83 2 5 4394 4473 427262394 427262315 4.660000e-18 104.0
60 TraesCS6A01G316100 chr4D 90.909 77 3 4 4392 4466 427262320 427262394 6.020000e-17 100.0
61 TraesCS6A01G316100 chr4D 89.873 79 1 2 4394 4465 402528006 402527928 2.800000e-15 95.3
62 TraesCS6A01G316100 chr5D 90.909 77 4 3 4394 4468 549851431 549851356 6.020000e-17 100.0
63 TraesCS6A01G316100 chr5D 88.372 86 6 3 4395 4478 549851359 549851442 6.020000e-17 100.0
64 TraesCS6A01G316100 chr5A 93.878 49 3 0 4658 4706 619265129 619265177 3.650000e-09 75.0
65 TraesCS6A01G316100 chr4A 95.652 46 2 0 4658 4703 309513887 309513932 3.650000e-09 75.0
66 TraesCS6A01G316100 chr2B 97.222 36 1 0 2855 2890 395534681 395534716 2.840000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G316100 chr6A 552737994 552747418 9424 True 5354.933333 15029 100.000000 1 9425 3 chr6A.!!$R2 9424
1 TraesCS6A01G316100 chr6D 406201327 406209734 8407 True 2724.000000 5720 95.477000 112 8992 5 chr6D.!!$R1 8880
2 TraesCS6A01G316100 chr6B 610233536 610241915 8379 True 2020.666667 5553 95.193167 262 8922 6 chr6B.!!$R2 8660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
70 71 0.033228 CCAAAGTTCATGCCCGCAAA 59.967 50.000 0.00 0.00 0.00 3.68 F
296 297 0.531974 TCGGCGGACCAGAATATTGC 60.532 55.000 7.21 0.00 34.57 3.56 F
1209 1211 0.697854 ATCACCCGCCCCCTAGATTT 60.698 55.000 0.00 0.00 0.00 2.17 F
2041 2177 0.807667 AGCTGCAAATAGTCCGAGCG 60.808 55.000 1.02 0.00 0.00 5.03 F
2393 3021 2.031120 GCCAATAAATAGTGCAGGCCA 58.969 47.619 5.01 0.00 34.71 5.36 F
3581 4213 3.101437 TGCAAAATACTACTCCCTCCGA 58.899 45.455 0.00 0.00 0.00 4.55 F
4780 5415 1.888512 CTGTAGGCATGCCAAAGTGTT 59.111 47.619 37.18 18.07 38.92 3.32 F
5461 6098 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13 F
5463 6100 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40 F
5465 6102 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12 F
5466 6103 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24 F
5468 6105 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16 F
5611 6249 1.351430 CGTGATGTGTGGTACTGGCG 61.351 60.000 0.00 0.00 0.00 5.69 F
7810 8451 0.029834 GCAAGATTCAATGGCGCGAT 59.970 50.000 12.10 0.00 0.00 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1469 1577 0.321564 CTGATTGACGCAGGGGTGAA 60.322 55.000 0.00 0.00 0.00 3.18 R
1821 1943 1.174783 GCCGTCAACTAGAGAGGACA 58.825 55.000 0.00 0.00 0.00 4.02 R
2875 3507 1.963515 GCATGAAGACCCAAAGTGGTT 59.036 47.619 0.00 0.00 39.24 3.67 R
3589 4221 0.538118 GTGCAATGGCCAATGGATGT 59.462 50.000 22.24 0.00 40.13 3.06 R
3590 4222 0.828022 AGTGCAATGGCCAATGGATG 59.172 50.000 22.24 11.46 40.13 3.51 R
5443 6080 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59 R
5611 6249 4.096984 CAGCCCACCAATCAACTATTCTTC 59.903 45.833 0.00 0.00 0.00 2.87 R
7175 7816 3.632145 GTCTTCCAAAGAAAGGAACTGCA 59.368 43.478 0.00 0.00 40.11 4.41 R
7455 8096 5.835113 AAAGAACACAACAATGCACTACT 57.165 34.783 0.00 0.00 0.00 2.57 R
7462 8103 6.168164 AGCAAACAAAAGAACACAACAATG 57.832 33.333 0.00 0.00 0.00 2.82 R
7671 8312 6.403866 AAATAACAAAGACAGCATTCCACA 57.596 33.333 0.00 0.00 0.00 4.17 R
7811 8452 6.126863 ACCTTTCCAGATTCAACATCTGTA 57.873 37.500 10.26 0.00 42.88 2.74 R
7892 8533 7.881775 AGACTAAACCTTTCAAACAGAACAT 57.118 32.000 0.00 0.00 35.56 2.71 R
9008 9665 0.179078 TGCGGACGTTTAACTGGTGT 60.179 50.000 0.00 0.00 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.442769 TCATCAAGGCGTGAAAGAGC 58.557 50.000 7.31 0.00 40.50 4.09
20 21 1.002430 TCATCAAGGCGTGAAAGAGCT 59.998 47.619 7.31 0.00 40.50 4.09
21 22 1.129998 CATCAAGGCGTGAAAGAGCTG 59.870 52.381 7.31 0.00 40.50 4.24
22 23 1.208614 CAAGGCGTGAAAGAGCTGC 59.791 57.895 0.00 0.00 0.00 5.25
23 24 1.227943 AAGGCGTGAAAGAGCTGCA 60.228 52.632 1.02 0.00 0.00 4.41
24 25 0.607489 AAGGCGTGAAAGAGCTGCAT 60.607 50.000 1.02 0.00 0.00 3.96
25 26 1.023513 AGGCGTGAAAGAGCTGCATC 61.024 55.000 1.02 0.00 0.00 3.91
26 27 1.300971 GGCGTGAAAGAGCTGCATCA 61.301 55.000 1.02 0.00 0.00 3.07
27 28 0.179205 GCGTGAAAGAGCTGCATCAC 60.179 55.000 1.02 9.71 38.98 3.06
28 29 1.150827 CGTGAAAGAGCTGCATCACA 58.849 50.000 20.00 5.86 41.69 3.58
29 30 1.136141 CGTGAAAGAGCTGCATCACAC 60.136 52.381 20.00 13.84 41.69 3.82
30 31 2.149578 GTGAAAGAGCTGCATCACACT 58.850 47.619 17.20 0.00 41.35 3.55
31 32 2.551459 GTGAAAGAGCTGCATCACACTT 59.449 45.455 17.20 0.72 41.35 3.16
32 33 2.810274 TGAAAGAGCTGCATCACACTTC 59.190 45.455 1.02 0.00 0.00 3.01
33 34 1.436600 AAGAGCTGCATCACACTTCG 58.563 50.000 1.02 0.00 0.00 3.79
34 35 1.018226 AGAGCTGCATCACACTTCGC 61.018 55.000 1.02 0.00 0.00 4.70
35 36 1.975363 GAGCTGCATCACACTTCGCC 61.975 60.000 1.02 0.00 0.00 5.54
36 37 2.327343 GCTGCATCACACTTCGCCA 61.327 57.895 0.00 0.00 0.00 5.69
37 38 1.855213 GCTGCATCACACTTCGCCAA 61.855 55.000 0.00 0.00 0.00 4.52
38 39 0.592637 CTGCATCACACTTCGCCAAA 59.407 50.000 0.00 0.00 0.00 3.28
39 40 0.310543 TGCATCACACTTCGCCAAAC 59.689 50.000 0.00 0.00 0.00 2.93
40 41 0.725784 GCATCACACTTCGCCAAACG 60.726 55.000 0.00 0.00 45.62 3.60
54 55 4.712122 GCCAAACGAATAAATCTCCCAA 57.288 40.909 0.00 0.00 0.00 4.12
55 56 5.066968 GCCAAACGAATAAATCTCCCAAA 57.933 39.130 0.00 0.00 0.00 3.28
56 57 5.102313 GCCAAACGAATAAATCTCCCAAAG 58.898 41.667 0.00 0.00 0.00 2.77
57 58 5.336451 GCCAAACGAATAAATCTCCCAAAGT 60.336 40.000 0.00 0.00 0.00 2.66
58 59 6.687604 CCAAACGAATAAATCTCCCAAAGTT 58.312 36.000 0.00 0.00 0.00 2.66
59 60 6.806739 CCAAACGAATAAATCTCCCAAAGTTC 59.193 38.462 0.00 0.00 0.00 3.01
60 61 7.367285 CAAACGAATAAATCTCCCAAAGTTCA 58.633 34.615 0.00 0.00 0.00 3.18
61 62 7.703058 AACGAATAAATCTCCCAAAGTTCAT 57.297 32.000 0.00 0.00 0.00 2.57
62 63 7.088589 ACGAATAAATCTCCCAAAGTTCATG 57.911 36.000 0.00 0.00 0.00 3.07
63 64 5.973565 CGAATAAATCTCCCAAAGTTCATGC 59.026 40.000 0.00 0.00 0.00 4.06
64 65 5.859205 ATAAATCTCCCAAAGTTCATGCC 57.141 39.130 0.00 0.00 0.00 4.40
65 66 2.149973 ATCTCCCAAAGTTCATGCCC 57.850 50.000 0.00 0.00 0.00 5.36
66 67 0.322456 TCTCCCAAAGTTCATGCCCG 60.322 55.000 0.00 0.00 0.00 6.13
67 68 1.937546 CTCCCAAAGTTCATGCCCGC 61.938 60.000 0.00 0.00 0.00 6.13
68 69 2.274645 CCCAAAGTTCATGCCCGCA 61.275 57.895 0.00 0.00 0.00 5.69
69 70 1.664873 CCAAAGTTCATGCCCGCAA 59.335 52.632 0.00 0.00 0.00 4.85
70 71 0.033228 CCAAAGTTCATGCCCGCAAA 59.967 50.000 0.00 0.00 0.00 3.68
71 72 1.338011 CCAAAGTTCATGCCCGCAAAT 60.338 47.619 0.00 0.00 0.00 2.32
72 73 2.094286 CCAAAGTTCATGCCCGCAAATA 60.094 45.455 0.00 0.00 0.00 1.40
73 74 3.583806 CAAAGTTCATGCCCGCAAATAA 58.416 40.909 0.00 0.00 0.00 1.40
74 75 3.951775 AAGTTCATGCCCGCAAATAAA 57.048 38.095 0.00 0.00 0.00 1.40
75 76 3.951775 AGTTCATGCCCGCAAATAAAA 57.048 38.095 0.00 0.00 0.00 1.52
76 77 4.264460 AGTTCATGCCCGCAAATAAAAA 57.736 36.364 0.00 0.00 0.00 1.94
77 78 4.831107 AGTTCATGCCCGCAAATAAAAAT 58.169 34.783 0.00 0.00 0.00 1.82
78 79 5.244755 AGTTCATGCCCGCAAATAAAAATT 58.755 33.333 0.00 0.00 0.00 1.82
79 80 6.402222 AGTTCATGCCCGCAAATAAAAATTA 58.598 32.000 0.00 0.00 0.00 1.40
80 81 6.312672 AGTTCATGCCCGCAAATAAAAATTAC 59.687 34.615 0.00 0.00 0.00 1.89
81 82 5.112686 TCATGCCCGCAAATAAAAATTACC 58.887 37.500 0.00 0.00 0.00 2.85
82 83 3.863041 TGCCCGCAAATAAAAATTACCC 58.137 40.909 0.00 0.00 0.00 3.69
83 84 3.260884 TGCCCGCAAATAAAAATTACCCA 59.739 39.130 0.00 0.00 0.00 4.51
84 85 4.254492 GCCCGCAAATAAAAATTACCCAA 58.746 39.130 0.00 0.00 0.00 4.12
85 86 4.331443 GCCCGCAAATAAAAATTACCCAAG 59.669 41.667 0.00 0.00 0.00 3.61
86 87 5.725362 CCCGCAAATAAAAATTACCCAAGA 58.275 37.500 0.00 0.00 0.00 3.02
87 88 6.166982 CCCGCAAATAAAAATTACCCAAGAA 58.833 36.000 0.00 0.00 0.00 2.52
88 89 6.651225 CCCGCAAATAAAAATTACCCAAGAAA 59.349 34.615 0.00 0.00 0.00 2.52
89 90 7.360522 CCCGCAAATAAAAATTACCCAAGAAAC 60.361 37.037 0.00 0.00 0.00 2.78
90 91 7.171678 CCGCAAATAAAAATTACCCAAGAAACA 59.828 33.333 0.00 0.00 0.00 2.83
91 92 8.552034 CGCAAATAAAAATTACCCAAGAAACAA 58.448 29.630 0.00 0.00 0.00 2.83
92 93 9.877137 GCAAATAAAAATTACCCAAGAAACAAG 57.123 29.630 0.00 0.00 0.00 3.16
93 94 9.877137 CAAATAAAAATTACCCAAGAAACAAGC 57.123 29.630 0.00 0.00 0.00 4.01
94 95 8.615878 AATAAAAATTACCCAAGAAACAAGCC 57.384 30.769 0.00 0.00 0.00 4.35
95 96 5.887214 AAAATTACCCAAGAAACAAGCCT 57.113 34.783 0.00 0.00 0.00 4.58
96 97 6.987403 AAAATTACCCAAGAAACAAGCCTA 57.013 33.333 0.00 0.00 0.00 3.93
97 98 6.987403 AAATTACCCAAGAAACAAGCCTAA 57.013 33.333 0.00 0.00 0.00 2.69
98 99 6.987403 AATTACCCAAGAAACAAGCCTAAA 57.013 33.333 0.00 0.00 0.00 1.85
99 100 6.590234 ATTACCCAAGAAACAAGCCTAAAG 57.410 37.500 0.00 0.00 0.00 1.85
100 101 3.910989 ACCCAAGAAACAAGCCTAAAGT 58.089 40.909 0.00 0.00 0.00 2.66
101 102 4.286707 ACCCAAGAAACAAGCCTAAAGTT 58.713 39.130 0.00 0.00 0.00 2.66
102 103 4.714802 ACCCAAGAAACAAGCCTAAAGTTT 59.285 37.500 0.00 0.00 38.10 2.66
103 104 5.894964 ACCCAAGAAACAAGCCTAAAGTTTA 59.105 36.000 0.00 0.00 35.77 2.01
104 105 6.381707 ACCCAAGAAACAAGCCTAAAGTTTAA 59.618 34.615 0.00 0.00 35.77 1.52
105 106 7.070696 ACCCAAGAAACAAGCCTAAAGTTTAAT 59.929 33.333 0.00 0.00 35.77 1.40
106 107 7.598869 CCCAAGAAACAAGCCTAAAGTTTAATC 59.401 37.037 0.00 0.00 35.77 1.75
107 108 7.598869 CCAAGAAACAAGCCTAAAGTTTAATCC 59.401 37.037 0.00 0.00 35.77 3.01
108 109 6.909909 AGAAACAAGCCTAAAGTTTAATCCG 58.090 36.000 0.00 0.00 35.77 4.18
109 110 6.713450 AGAAACAAGCCTAAAGTTTAATCCGA 59.287 34.615 0.00 0.00 35.77 4.55
110 111 7.393515 AGAAACAAGCCTAAAGTTTAATCCGAT 59.606 33.333 0.00 0.00 35.77 4.18
111 112 6.436843 ACAAGCCTAAAGTTTAATCCGATG 57.563 37.500 0.00 0.00 0.00 3.84
112 113 6.177610 ACAAGCCTAAAGTTTAATCCGATGA 58.822 36.000 0.00 0.00 0.00 2.92
113 114 6.093633 ACAAGCCTAAAGTTTAATCCGATGAC 59.906 38.462 0.00 0.00 0.00 3.06
114 115 5.123936 AGCCTAAAGTTTAATCCGATGACC 58.876 41.667 0.00 0.00 0.00 4.02
115 116 4.025145 GCCTAAAGTTTAATCCGATGACCG 60.025 45.833 0.00 0.00 38.18 4.79
116 117 5.353938 CCTAAAGTTTAATCCGATGACCGA 58.646 41.667 0.00 0.00 41.76 4.69
117 118 5.989777 CCTAAAGTTTAATCCGATGACCGAT 59.010 40.000 0.00 0.00 41.76 4.18
118 119 7.149973 CCTAAAGTTTAATCCGATGACCGATA 58.850 38.462 0.00 0.00 41.76 2.92
123 124 7.916552 AGTTTAATCCGATGACCGATAAAAAG 58.083 34.615 0.00 0.00 41.76 2.27
125 126 8.392612 GTTTAATCCGATGACCGATAAAAAGAA 58.607 33.333 0.00 0.00 41.76 2.52
133 134 3.034406 CCGATAAAAAGAACTTCGGCG 57.966 47.619 0.00 0.00 42.34 6.46
142 143 1.070289 AGAACTTCGGCGGAGACTTTT 59.930 47.619 24.44 5.16 0.00 2.27
144 145 2.825861 ACTTCGGCGGAGACTTTTTA 57.174 45.000 24.44 0.00 0.00 1.52
146 147 3.259902 ACTTCGGCGGAGACTTTTTATC 58.740 45.455 24.44 0.00 0.00 1.75
149 150 1.365699 GGCGGAGACTTTTTATCGCA 58.634 50.000 7.76 0.00 44.14 5.10
150 151 1.062148 GGCGGAGACTTTTTATCGCAC 59.938 52.381 7.76 0.00 44.14 5.34
151 152 1.730064 GCGGAGACTTTTTATCGCACA 59.270 47.619 0.00 0.00 42.27 4.57
156 157 5.957796 CGGAGACTTTTTATCGCACAATTAC 59.042 40.000 0.00 0.00 0.00 1.89
162 163 9.123709 GACTTTTTATCGCACAATTACATTCAA 57.876 29.630 0.00 0.00 0.00 2.69
166 167 9.631452 TTTTATCGCACAATTACATTCAATTGA 57.369 25.926 3.38 3.38 44.96 2.57
168 169 9.800433 TTATCGCACAATTACATTCAATTGATT 57.200 25.926 9.40 2.66 44.96 2.57
169 170 7.739022 TCGCACAATTACATTCAATTGATTC 57.261 32.000 9.40 3.70 44.96 2.52
170 171 6.468637 TCGCACAATTACATTCAATTGATTCG 59.531 34.615 9.40 3.46 44.96 3.34
171 172 6.468637 CGCACAATTACATTCAATTGATTCGA 59.531 34.615 9.40 0.00 44.96 3.71
172 173 7.008176 CGCACAATTACATTCAATTGATTCGAA 59.992 33.333 9.40 0.00 44.96 3.71
173 174 8.810427 GCACAATTACATTCAATTGATTCGAAT 58.190 29.630 11.20 11.20 44.96 3.34
238 239 8.558973 AATCATAGCAAGGTCTGAAATATAGC 57.441 34.615 0.00 0.00 0.00 2.97
245 246 6.436261 CAAGGTCTGAAATATAGCTGCATTG 58.564 40.000 1.02 0.00 0.00 2.82
252 253 1.298602 TATAGCTGCATTGCACCACG 58.701 50.000 7.38 0.00 33.79 4.94
287 288 1.450669 GGCTTTATTCGGCGGACCA 60.451 57.895 7.21 0.00 34.57 4.02
295 296 1.948104 TTCGGCGGACCAGAATATTG 58.052 50.000 7.21 0.00 34.57 1.90
296 297 0.531974 TCGGCGGACCAGAATATTGC 60.532 55.000 7.21 0.00 34.57 3.56
297 298 1.831389 CGGCGGACCAGAATATTGCG 61.831 60.000 0.00 0.00 34.57 4.85
462 463 2.592001 CCTCGCTCGATCTCCCGA 60.592 66.667 0.00 0.00 37.03 5.14
1144 1145 1.697284 CTCCCTCTCCGTCATCATCA 58.303 55.000 0.00 0.00 0.00 3.07
1180 1181 1.282157 TCTGGACGGTCAGATCTCTCA 59.718 52.381 10.76 0.00 38.70 3.27
1188 1189 3.244735 CGGTCAGATCTCTCATCCCTCTA 60.245 52.174 0.00 0.00 0.00 2.43
1193 1194 5.074239 TCAGATCTCTCATCCCTCTACATCA 59.926 44.000 0.00 0.00 0.00 3.07
1204 1206 1.458777 CTACATCACCCGCCCCCTA 60.459 63.158 0.00 0.00 0.00 3.53
1209 1211 0.697854 ATCACCCGCCCCCTAGATTT 60.698 55.000 0.00 0.00 0.00 2.17
1226 1228 2.288961 TTTCGATCCTCGTAGTTGCC 57.711 50.000 0.00 0.00 41.35 4.52
1227 1229 1.471119 TTCGATCCTCGTAGTTGCCT 58.529 50.000 0.00 0.00 41.35 4.75
1237 1239 0.912486 GTAGTTGCCTGTGATCCCCT 59.088 55.000 0.00 0.00 0.00 4.79
1238 1240 1.134371 GTAGTTGCCTGTGATCCCCTC 60.134 57.143 0.00 0.00 0.00 4.30
1239 1241 1.077429 GTTGCCTGTGATCCCCTCC 60.077 63.158 0.00 0.00 0.00 4.30
1244 1246 1.522569 CTGTGATCCCCTCCGGTTC 59.477 63.158 0.00 0.00 0.00 3.62
1318 1426 1.421382 CTCTGGTTTTGCGCCAATTG 58.579 50.000 4.18 0.00 35.32 2.32
1343 1451 4.827284 GGTGAATTGGGGTATTAGGACATG 59.173 45.833 0.00 0.00 0.00 3.21
1398 1506 1.002011 GGGTGCTTGAGGGGAGAAC 60.002 63.158 0.00 0.00 0.00 3.01
1401 1509 2.815647 GCTTGAGGGGAGAACGCG 60.816 66.667 3.53 3.53 37.07 6.01
1469 1577 4.544683 GTCTAGGTGACAGGGTATTAGGT 58.455 47.826 0.00 0.00 44.73 3.08
1484 1592 1.122632 TAGGTTCACCCCTGCGTCAA 61.123 55.000 0.00 0.00 35.97 3.18
1517 1628 5.605534 CCATCTGTCCAGGAGTACTAATTG 58.394 45.833 0.00 0.00 0.00 2.32
1584 1695 5.450412 CGAGCTAAATTGGCACCATATGTTT 60.450 40.000 3.77 0.00 0.00 2.83
1608 1724 2.043227 GTATAGGGCCTGCTTGACTCT 58.957 52.381 18.53 0.00 0.00 3.24
1631 1747 9.337396 CTCTAATTAGCTTCTGAGAAGTCTCTA 57.663 37.037 22.01 12.67 43.25 2.43
1643 1763 9.742144 TCTGAGAAGTCTCTACACTATTTTACT 57.258 33.333 9.63 0.00 43.25 2.24
1651 1771 9.141400 GTCTCTACACTATTTTACTCTTTGTGG 57.859 37.037 0.00 0.00 0.00 4.17
1904 2026 8.907399 GCAGTAACTGTTAGCTCAAGGGAACT 62.907 46.154 0.00 0.00 36.45 3.01
1905 2027 3.409026 ACTGTTAGCTCAAGGGAACTG 57.591 47.619 0.00 0.00 42.68 3.16
1906 2028 2.972713 ACTGTTAGCTCAAGGGAACTGA 59.027 45.455 8.21 0.00 42.68 3.41
1907 2029 3.007398 ACTGTTAGCTCAAGGGAACTGAG 59.993 47.826 8.21 0.00 42.68 3.35
1908 2030 3.239449 TGTTAGCTCAAGGGAACTGAGA 58.761 45.455 4.06 0.00 42.68 3.27
1909 2031 3.646162 TGTTAGCTCAAGGGAACTGAGAA 59.354 43.478 4.06 0.00 42.68 2.87
1910 2032 2.849294 AGCTCAAGGGAACTGAGAAC 57.151 50.000 4.06 0.00 42.68 3.01
1911 2033 1.001406 AGCTCAAGGGAACTGAGAACG 59.999 52.381 4.06 0.00 42.68 3.95
1912 2034 1.000955 GCTCAAGGGAACTGAGAACGA 59.999 52.381 4.06 0.00 42.68 3.85
1913 2035 2.548067 GCTCAAGGGAACTGAGAACGAA 60.548 50.000 4.06 0.00 42.68 3.85
1914 2036 3.728845 CTCAAGGGAACTGAGAACGAAA 58.271 45.455 0.00 0.00 42.68 3.46
1915 2037 3.463944 TCAAGGGAACTGAGAACGAAAC 58.536 45.455 0.00 0.00 42.68 2.78
1916 2038 2.150397 AGGGAACTGAGAACGAAACG 57.850 50.000 0.00 0.00 41.13 3.60
1917 2039 1.684983 AGGGAACTGAGAACGAAACGA 59.315 47.619 0.00 0.00 41.13 3.85
1954 2090 3.167485 ACCAGGCATCAAAATCACACAT 58.833 40.909 0.00 0.00 0.00 3.21
2041 2177 0.807667 AGCTGCAAATAGTCCGAGCG 60.808 55.000 1.02 0.00 0.00 5.03
2099 2235 3.871594 GTGCAGGCGAAGTGTCTATAAAT 59.128 43.478 0.00 0.00 0.00 1.40
2236 2379 4.290093 TCCCTCTACTGCTTCACATACAT 58.710 43.478 0.00 0.00 0.00 2.29
2237 2380 4.100035 TCCCTCTACTGCTTCACATACATG 59.900 45.833 0.00 0.00 0.00 3.21
2238 2381 4.141846 CCCTCTACTGCTTCACATACATGT 60.142 45.833 2.69 2.69 42.84 3.21
2393 3021 2.031120 GCCAATAAATAGTGCAGGCCA 58.969 47.619 5.01 0.00 34.71 5.36
2607 3239 4.761975 CATTGCTTTCTGCCATGGTTAAT 58.238 39.130 14.67 0.56 40.06 1.40
2717 3349 9.612066 TCAGCTTTACTTTCCAAATTCAATTTT 57.388 25.926 0.00 0.00 0.00 1.82
2940 3572 4.911514 TCTTACTGTTTGGTTTCAAGGC 57.088 40.909 0.00 0.00 33.98 4.35
3437 4069 6.944862 AGTCATTTCAGCTCTTTCTTTATGGT 59.055 34.615 0.00 0.00 0.00 3.55
3516 4148 6.741992 TGAACAAGCTACATGTTTAGGATG 57.258 37.500 2.30 0.00 40.90 3.51
3575 4207 9.765795 ATCATTACTACTGCAAAATACTACTCC 57.234 33.333 0.00 0.00 0.00 3.85
3576 4208 8.202137 TCATTACTACTGCAAAATACTACTCCC 58.798 37.037 0.00 0.00 0.00 4.30
3577 4209 7.729124 TTACTACTGCAAAATACTACTCCCT 57.271 36.000 0.00 0.00 0.00 4.20
3578 4210 6.223351 ACTACTGCAAAATACTACTCCCTC 57.777 41.667 0.00 0.00 0.00 4.30
3579 4211 4.489306 ACTGCAAAATACTACTCCCTCC 57.511 45.455 0.00 0.00 0.00 4.30
3580 4212 3.118738 ACTGCAAAATACTACTCCCTCCG 60.119 47.826 0.00 0.00 0.00 4.63
3581 4213 3.101437 TGCAAAATACTACTCCCTCCGA 58.899 45.455 0.00 0.00 0.00 4.55
3582 4214 3.516300 TGCAAAATACTACTCCCTCCGAA 59.484 43.478 0.00 0.00 0.00 4.30
3583 4215 4.120589 GCAAAATACTACTCCCTCCGAAG 58.879 47.826 0.00 0.00 0.00 3.79
3611 4243 2.457813 TCCATTGGCCATTGCACTAT 57.542 45.000 20.09 0.00 40.13 2.12
3614 4246 2.544277 CCATTGGCCATTGCACTATTCG 60.544 50.000 20.09 2.60 40.13 3.34
3682 4314 4.460263 TGCCACTTAAACTTCTGTGATGT 58.540 39.130 0.00 0.00 32.72 3.06
4183 4816 6.830324 AGATGGTAACTTGTGATTGTATGCAT 59.170 34.615 3.79 3.79 37.61 3.96
4193 4826 5.647225 TGTGATTGTATGCATGTTTCAGCTA 59.353 36.000 10.16 0.00 0.00 3.32
4351 4984 5.890424 AGGTATTGTGGAATAAACCAACG 57.110 39.130 0.00 0.00 41.87 4.10
4402 5037 8.384718 TCTCTTAGTAATATCTGGTACTCCCTC 58.615 40.741 0.00 0.00 32.79 4.30
4431 5066 8.819643 AGAAATATAAGAGCGTTTAGATCACC 57.180 34.615 0.00 0.00 37.82 4.02
4780 5415 1.888512 CTGTAGGCATGCCAAAGTGTT 59.111 47.619 37.18 18.07 38.92 3.32
4817 5452 5.729974 AGTTTGTAGAGAAACAACGTTCC 57.270 39.130 0.00 0.00 39.02 3.62
5026 5661 9.657419 ATTTTAATCTTGACAAAATAGCCCTTG 57.343 29.630 0.00 0.00 31.77 3.61
5117 5752 6.791303 TGATATTGTATTTTGGCGAACCTTC 58.209 36.000 0.00 0.00 36.63 3.46
5165 5800 6.183359 GCTACGATAACTTGACAGTTCTGTTC 60.183 42.308 6.91 2.12 42.66 3.18
5317 5954 3.521727 AGCATATATTCCCTCCGTTCCT 58.478 45.455 0.00 0.00 0.00 3.36
5357 5994 5.678583 AGAGATTCCACTATGAACCACATG 58.321 41.667 0.00 0.00 39.77 3.21
5415 6052 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
5439 6076 8.986991 AGTCCATAGTGAAATCTCTACAAAGAT 58.013 33.333 0.00 0.00 37.61 2.40
5452 6089 8.480133 TCTCTACAAAGATTTATACTCCCTCC 57.520 38.462 0.00 0.00 0.00 4.30
5453 6090 7.230913 TCTCTACAAAGATTTATACTCCCTCCG 59.769 40.741 0.00 0.00 0.00 4.63
5454 6091 5.952347 ACAAAGATTTATACTCCCTCCGT 57.048 39.130 0.00 0.00 0.00 4.69
5455 6092 5.915175 ACAAAGATTTATACTCCCTCCGTC 58.085 41.667 0.00 0.00 0.00 4.79
5456 6093 5.163332 ACAAAGATTTATACTCCCTCCGTCC 60.163 44.000 0.00 0.00 0.00 4.79
5457 6094 3.155501 AGATTTATACTCCCTCCGTCCG 58.844 50.000 0.00 0.00 0.00 4.79
5458 6095 1.696063 TTTATACTCCCTCCGTCCGG 58.304 55.000 0.00 0.00 0.00 5.14
5459 6096 0.846015 TTATACTCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
5460 6097 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
5461 6098 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
5462 6099 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
5463 6100 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
5464 6101 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
5465 6102 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
5466 6103 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
5467 6104 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
5468 6105 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
5469 6106 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
5470 6107 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
5471 6108 1.997606 CCGTCCGGAAATACTTGTCAC 59.002 52.381 5.23 0.00 37.50 3.67
5472 6109 1.997606 CGTCCGGAAATACTTGTCACC 59.002 52.381 5.23 0.00 0.00 4.02
5473 6110 2.610976 CGTCCGGAAATACTTGTCACCA 60.611 50.000 5.23 0.00 0.00 4.17
5474 6111 3.404899 GTCCGGAAATACTTGTCACCAA 58.595 45.455 5.23 0.00 0.00 3.67
5475 6112 3.816523 GTCCGGAAATACTTGTCACCAAA 59.183 43.478 5.23 0.00 0.00 3.28
5476 6113 4.276431 GTCCGGAAATACTTGTCACCAAAA 59.724 41.667 5.23 0.00 0.00 2.44
5477 6114 5.048294 GTCCGGAAATACTTGTCACCAAAAT 60.048 40.000 5.23 0.00 0.00 1.82
5478 6115 5.048364 TCCGGAAATACTTGTCACCAAAATG 60.048 40.000 0.00 0.00 0.00 2.32
5479 6116 5.160641 CGGAAATACTTGTCACCAAAATGG 58.839 41.667 0.00 0.00 45.02 3.16
5480 6117 5.048364 CGGAAATACTTGTCACCAAAATGGA 60.048 40.000 2.85 0.00 40.96 3.41
5481 6118 6.350110 CGGAAATACTTGTCACCAAAATGGAT 60.350 38.462 2.85 0.00 40.96 3.41
5482 6119 7.148154 CGGAAATACTTGTCACCAAAATGGATA 60.148 37.037 2.85 0.00 40.96 2.59
5483 6120 8.527810 GGAAATACTTGTCACCAAAATGGATAA 58.472 33.333 2.85 0.00 40.96 1.75
5484 6121 9.921637 GAAATACTTGTCACCAAAATGGATAAA 57.078 29.630 2.85 0.00 40.96 1.40
5486 6123 9.927668 AATACTTGTCACCAAAATGGATAAAAG 57.072 29.630 2.85 4.20 40.96 2.27
5487 6124 6.758254 ACTTGTCACCAAAATGGATAAAAGG 58.242 36.000 2.85 0.00 40.96 3.11
5488 6125 5.736951 TGTCACCAAAATGGATAAAAGGG 57.263 39.130 2.85 0.00 40.96 3.95
5489 6126 4.530161 TGTCACCAAAATGGATAAAAGGGG 59.470 41.667 2.85 0.00 40.96 4.79
5490 6127 4.775253 GTCACCAAAATGGATAAAAGGGGA 59.225 41.667 2.85 0.00 40.96 4.81
5491 6128 5.425217 GTCACCAAAATGGATAAAAGGGGAT 59.575 40.000 2.85 0.00 40.96 3.85
5492 6129 5.424895 TCACCAAAATGGATAAAAGGGGATG 59.575 40.000 2.85 0.00 40.96 3.51
5493 6130 5.189539 CACCAAAATGGATAAAAGGGGATGT 59.810 40.000 2.85 0.00 40.96 3.06
5494 6131 6.382570 CACCAAAATGGATAAAAGGGGATGTA 59.617 38.462 2.85 0.00 40.96 2.29
5495 6132 7.071071 CACCAAAATGGATAAAAGGGGATGTAT 59.929 37.037 2.85 0.00 40.96 2.29
5496 6133 7.290014 ACCAAAATGGATAAAAGGGGATGTATC 59.710 37.037 2.85 0.00 40.96 2.24
5497 6134 7.510343 CCAAAATGGATAAAAGGGGATGTATCT 59.490 37.037 0.00 0.00 40.96 1.98
5498 6135 9.586732 CAAAATGGATAAAAGGGGATGTATCTA 57.413 33.333 0.00 0.00 0.00 1.98
5499 6136 9.813826 AAAATGGATAAAAGGGGATGTATCTAG 57.186 33.333 0.00 0.00 0.00 2.43
5500 6137 8.757307 AATGGATAAAAGGGGATGTATCTAGA 57.243 34.615 0.00 0.00 0.00 2.43
5501 6138 8.940012 ATGGATAAAAGGGGATGTATCTAGAT 57.060 34.615 10.73 10.73 0.00 1.98
5502 6139 8.150827 TGGATAAAAGGGGATGTATCTAGATG 57.849 38.462 15.79 0.00 0.00 2.90
5503 6140 7.739444 TGGATAAAAGGGGATGTATCTAGATGT 59.261 37.037 15.79 1.25 0.00 3.06
5504 6141 9.268282 GGATAAAAGGGGATGTATCTAGATGTA 57.732 37.037 15.79 4.44 0.00 2.29
5511 6148 9.845214 AGGGGATGTATCTAGATGTATTTTAGT 57.155 33.333 15.79 0.00 0.00 2.24
5557 6194 8.208718 TCCATTTAGATGACAAGTATTTTCGG 57.791 34.615 0.00 0.00 35.16 4.30
5558 6195 8.044309 TCCATTTAGATGACAAGTATTTTCGGA 58.956 33.333 0.00 0.00 35.16 4.55
5559 6196 8.122952 CCATTTAGATGACAAGTATTTTCGGAC 58.877 37.037 0.00 0.00 35.16 4.79
5560 6197 8.664798 CATTTAGATGACAAGTATTTTCGGACA 58.335 33.333 0.00 0.00 35.16 4.02
5561 6198 7.827819 TTAGATGACAAGTATTTTCGGACAG 57.172 36.000 0.00 0.00 0.00 3.51
5562 6199 6.037786 AGATGACAAGTATTTTCGGACAGA 57.962 37.500 0.00 0.00 0.00 3.41
5563 6200 6.102663 AGATGACAAGTATTTTCGGACAGAG 58.897 40.000 0.00 0.00 0.00 3.35
5564 6201 4.566004 TGACAAGTATTTTCGGACAGAGG 58.434 43.478 0.00 0.00 0.00 3.69
5565 6202 3.933332 GACAAGTATTTTCGGACAGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
5566 6203 3.581332 ACAAGTATTTTCGGACAGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
5567 6204 4.184629 CAAGTATTTTCGGACAGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
5611 6249 1.351430 CGTGATGTGTGGTACTGGCG 61.351 60.000 0.00 0.00 0.00 5.69
5718 6356 6.200854 CCTCAGTAATTTGTTTGCAAAACCTC 59.799 38.462 14.67 1.68 46.23 3.85
5727 6365 8.873215 TTTGTTTGCAAAACCTCGATTAATAA 57.127 26.923 14.67 0.00 41.15 1.40
6118 6758 5.793817 TGTATACTGAGAAAGCAGCTTCAA 58.206 37.500 8.48 0.00 39.51 2.69
7022 7663 9.226345 GTTATTTATGCTATGTGCTTCTGTTTC 57.774 33.333 0.00 0.00 43.37 2.78
7175 7816 5.514484 GCAGAGAATGGGGAACATAGATGAT 60.514 44.000 0.00 0.00 39.40 2.45
7455 8096 9.958180 TTTCTATGGTGTATCTTTCATTTCTCA 57.042 29.630 0.00 0.00 0.00 3.27
7462 8103 7.201565 GGTGTATCTTTCATTTCTCAGTAGTGC 60.202 40.741 0.00 0.00 0.00 4.40
7551 8192 3.691049 TCAGTTTTCTTGTTTCCGCAG 57.309 42.857 0.00 0.00 0.00 5.18
7683 8324 3.132925 GCAAATTGTTGTGGAATGCTGT 58.867 40.909 0.00 0.00 37.06 4.40
7810 8451 0.029834 GCAAGATTCAATGGCGCGAT 59.970 50.000 12.10 0.00 0.00 4.58
7811 8452 1.534595 GCAAGATTCAATGGCGCGATT 60.535 47.619 12.10 12.23 0.00 3.34
7971 8612 4.414337 AGATACAGTGGAGATGAAAGCC 57.586 45.455 0.00 0.00 0.00 4.35
8013 8654 0.911769 ATGGAAGAGCCGGTCAATCA 59.088 50.000 1.90 0.00 40.66 2.57
8106 8747 4.020662 ACAAAGCCAGTGAAAAAGGAAACA 60.021 37.500 0.00 0.00 0.00 2.83
8112 8753 4.157656 CCAGTGAAAAAGGAAACAGTGTCA 59.842 41.667 0.00 0.00 33.50 3.58
8113 8754 5.335127 CAGTGAAAAAGGAAACAGTGTCAG 58.665 41.667 0.00 0.00 0.00 3.51
8120 8761 2.105477 AGGAAACAGTGTCAGCATCTGT 59.895 45.455 0.00 0.00 43.04 3.41
8132 8773 3.132160 CAGCATCTGTATCTCTGCTTGG 58.868 50.000 0.00 0.00 42.79 3.61
8143 8784 2.503356 TCTCTGCTTGGAGAAGGGAATC 59.497 50.000 2.98 0.00 39.13 2.52
8286 8927 0.528684 CTCCTCATTCGAACGCCTCC 60.529 60.000 0.00 0.00 0.00 4.30
8327 8968 7.148255 CGATGACATCTTCCAAAGGATAAAACA 60.148 37.037 13.45 0.00 0.00 2.83
8332 8973 1.816224 TCCAAAGGATAAAACAGCGCC 59.184 47.619 2.29 0.00 0.00 6.53
8427 9074 1.067213 GCAGGATCGAGAAGATAGGCC 60.067 57.143 0.00 0.00 40.26 5.19
8431 9078 1.609555 GATCGAGAAGATAGGCCGTGT 59.390 52.381 0.00 0.00 40.26 4.49
8432 9079 1.471119 TCGAGAAGATAGGCCGTGTT 58.529 50.000 0.00 0.00 0.00 3.32
8435 9082 2.603560 CGAGAAGATAGGCCGTGTTTTC 59.396 50.000 0.00 0.00 0.00 2.29
8436 9083 2.937149 GAGAAGATAGGCCGTGTTTTCC 59.063 50.000 0.00 0.00 0.00 3.13
8457 9104 6.062258 TCCCCCTTAGAAGTTAGAACATTG 57.938 41.667 0.00 0.00 0.00 2.82
8460 9107 6.374613 CCCCCTTAGAAGTTAGAACATTGAAC 59.625 42.308 0.00 0.00 0.00 3.18
8465 9112 8.833231 TTAGAAGTTAGAACATTGAACTCTGG 57.167 34.615 0.00 0.00 32.27 3.86
8485 9132 5.951747 TCTGGGAATCAAAAGGATTTGGTAG 59.048 40.000 1.86 0.00 46.17 3.18
8596 9244 1.202758 TGGAAAGGTGCAGACGTGAAT 60.203 47.619 0.00 0.00 0.00 2.57
8604 9252 1.264020 TGCAGACGTGAATGAAAGCAC 59.736 47.619 0.00 0.00 0.00 4.40
8642 9290 2.037136 CCTGCAGAAAGGACAGCGG 61.037 63.158 17.39 0.00 40.02 5.52
8648 9296 2.275318 CAGAAAGGACAGCGGATTCTC 58.725 52.381 0.00 0.00 0.00 2.87
8777 9426 9.820229 GTTGAAATCTGTATTGAACATAAACGA 57.180 29.630 0.00 0.00 37.50 3.85
8814 9463 2.889045 TGACGAGTGTAGGCTGTAAAGT 59.111 45.455 0.00 0.00 0.00 2.66
8919 9576 4.081365 TGTGGGCGAACATCTGACTTTATA 60.081 41.667 0.00 0.00 0.00 0.98
8920 9577 5.057149 GTGGGCGAACATCTGACTTTATAT 58.943 41.667 0.00 0.00 0.00 0.86
8921 9578 5.527582 GTGGGCGAACATCTGACTTTATATT 59.472 40.000 0.00 0.00 0.00 1.28
8922 9579 6.704493 GTGGGCGAACATCTGACTTTATATTA 59.296 38.462 0.00 0.00 0.00 0.98
8923 9580 6.704493 TGGGCGAACATCTGACTTTATATTAC 59.296 38.462 0.00 0.00 0.00 1.89
8924 9581 6.704493 GGGCGAACATCTGACTTTATATTACA 59.296 38.462 0.00 0.00 0.00 2.41
8925 9582 7.095607 GGGCGAACATCTGACTTTATATTACAG 60.096 40.741 0.00 0.00 0.00 2.74
8935 9592 9.864034 CTGACTTTATATTACAGTATTTTGCCG 57.136 33.333 0.00 0.00 0.00 5.69
8959 9616 7.374272 CGTATATCTTCACCATCTGAACATCT 58.626 38.462 0.00 0.00 33.65 2.90
8992 9649 0.813184 CACTAGGTGCTTGCAATGGG 59.187 55.000 0.00 0.00 0.00 4.00
8993 9650 0.967380 ACTAGGTGCTTGCAATGGGC 60.967 55.000 0.00 0.00 45.13 5.36
8994 9651 0.682209 CTAGGTGCTTGCAATGGGCT 60.682 55.000 0.00 0.00 45.15 5.19
8995 9652 0.623194 TAGGTGCTTGCAATGGGCTA 59.377 50.000 0.00 0.00 45.15 3.93
8996 9653 0.967380 AGGTGCTTGCAATGGGCTAC 60.967 55.000 0.00 1.83 45.15 3.58
8997 9654 1.137404 GTGCTTGCAATGGGCTACG 59.863 57.895 0.00 0.00 45.15 3.51
8998 9655 2.045708 TGCTTGCAATGGGCTACGG 61.046 57.895 0.00 0.00 45.15 4.02
8999 9656 1.748879 GCTTGCAATGGGCTACGGA 60.749 57.895 0.00 0.00 45.15 4.69
9000 9657 1.718757 GCTTGCAATGGGCTACGGAG 61.719 60.000 0.00 0.00 45.15 4.63
9001 9658 1.077787 TTGCAATGGGCTACGGAGG 60.078 57.895 0.00 0.00 45.15 4.30
9002 9659 1.847798 TTGCAATGGGCTACGGAGGT 61.848 55.000 0.00 0.00 45.15 3.85
9003 9660 0.978667 TGCAATGGGCTACGGAGGTA 60.979 55.000 0.00 0.00 45.15 3.08
9004 9661 0.179468 GCAATGGGCTACGGAGGTAA 59.821 55.000 0.00 0.00 40.25 2.85
9005 9662 1.949465 CAATGGGCTACGGAGGTAAC 58.051 55.000 0.00 0.00 0.00 2.50
9006 9663 4.382727 GCAATGGGCTACGGAGGTAACT 62.383 54.545 0.00 0.00 46.93 2.24
9007 9664 5.062569 GCAATGGGCTACGGAGGTAACTA 62.063 52.174 0.00 0.00 44.80 2.24
9008 9665 6.486658 GCAATGGGCTACGGAGGTAACTAA 62.487 50.000 0.00 0.00 44.80 2.24
9023 9680 6.215477 GGTAACTAACACCAGTTAAACGTC 57.785 41.667 0.00 0.00 41.44 4.34
9024 9681 5.177511 GGTAACTAACACCAGTTAAACGTCC 59.822 44.000 0.00 0.00 41.44 4.79
9025 9682 3.383761 ACTAACACCAGTTAAACGTCCG 58.616 45.455 0.00 0.00 39.58 4.79
9026 9683 0.939419 AACACCAGTTAAACGTCCGC 59.061 50.000 0.00 0.00 35.85 5.54
9027 9684 0.179078 ACACCAGTTAAACGTCCGCA 60.179 50.000 0.00 0.00 0.00 5.69
9028 9685 0.938713 CACCAGTTAAACGTCCGCAA 59.061 50.000 0.00 0.00 0.00 4.85
9029 9686 1.331138 CACCAGTTAAACGTCCGCAAA 59.669 47.619 0.00 0.00 0.00 3.68
9030 9687 2.031508 CACCAGTTAAACGTCCGCAAAT 60.032 45.455 0.00 0.00 0.00 2.32
9031 9688 3.186817 CACCAGTTAAACGTCCGCAAATA 59.813 43.478 0.00 0.00 0.00 1.40
9032 9689 4.004982 ACCAGTTAAACGTCCGCAAATAT 58.995 39.130 0.00 0.00 0.00 1.28
9033 9690 4.456566 ACCAGTTAAACGTCCGCAAATATT 59.543 37.500 0.00 0.00 0.00 1.28
9034 9691 5.025826 CCAGTTAAACGTCCGCAAATATTC 58.974 41.667 0.00 0.00 0.00 1.75
9035 9692 5.391097 CCAGTTAAACGTCCGCAAATATTCA 60.391 40.000 0.00 0.00 0.00 2.57
9036 9693 5.732647 CAGTTAAACGTCCGCAAATATTCAG 59.267 40.000 0.00 0.00 0.00 3.02
9037 9694 5.410439 AGTTAAACGTCCGCAAATATTCAGT 59.590 36.000 0.00 0.00 0.00 3.41
9038 9695 3.740044 AACGTCCGCAAATATTCAGTG 57.260 42.857 0.00 0.00 0.00 3.66
9039 9696 2.967362 ACGTCCGCAAATATTCAGTGA 58.033 42.857 0.00 0.00 0.00 3.41
9040 9697 3.331150 ACGTCCGCAAATATTCAGTGAA 58.669 40.909 8.27 8.27 0.00 3.18
9041 9698 3.749088 ACGTCCGCAAATATTCAGTGAAA 59.251 39.130 10.14 0.00 0.00 2.69
9042 9699 4.142902 ACGTCCGCAAATATTCAGTGAAAG 60.143 41.667 10.14 0.00 0.00 2.62
9043 9700 4.142902 CGTCCGCAAATATTCAGTGAAAGT 60.143 41.667 10.14 0.00 0.00 2.66
9044 9701 5.324697 GTCCGCAAATATTCAGTGAAAGTC 58.675 41.667 10.14 0.00 0.00 3.01
9421 10078 7.020827 AGGGAGTACAATACAATATGATGGG 57.979 40.000 0.00 0.00 0.00 4.00
9422 10079 6.792473 AGGGAGTACAATACAATATGATGGGA 59.208 38.462 0.00 0.00 0.00 4.37
9423 10080 7.294720 AGGGAGTACAATACAATATGATGGGAA 59.705 37.037 0.00 0.00 0.00 3.97
9424 10081 7.607991 GGGAGTACAATACAATATGATGGGAAG 59.392 40.741 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.002430 AGCTCTTTCACGCCTTGATGA 59.998 47.619 0.00 0.00 32.84 2.92
1 2 1.129998 CAGCTCTTTCACGCCTTGATG 59.870 52.381 0.00 0.00 32.84 3.07
2 3 1.446907 CAGCTCTTTCACGCCTTGAT 58.553 50.000 0.00 0.00 32.84 2.57
4 5 1.208614 GCAGCTCTTTCACGCCTTG 59.791 57.895 0.00 0.00 0.00 3.61
6 7 1.002868 ATGCAGCTCTTTCACGCCT 60.003 52.632 0.00 0.00 0.00 5.52
7 8 1.300971 TGATGCAGCTCTTTCACGCC 61.301 55.000 2.53 0.00 0.00 5.68
8 9 0.179205 GTGATGCAGCTCTTTCACGC 60.179 55.000 2.53 0.00 30.29 5.34
9 10 1.136141 GTGTGATGCAGCTCTTTCACG 60.136 52.381 2.53 0.00 41.02 4.35
10 11 2.149578 AGTGTGATGCAGCTCTTTCAC 58.850 47.619 2.53 6.20 39.11 3.18
11 12 2.556144 AGTGTGATGCAGCTCTTTCA 57.444 45.000 2.53 0.00 0.00 2.69
12 13 2.159734 CGAAGTGTGATGCAGCTCTTTC 60.160 50.000 2.53 7.51 0.00 2.62
13 14 1.802960 CGAAGTGTGATGCAGCTCTTT 59.197 47.619 2.53 0.00 0.00 2.52
14 15 1.436600 CGAAGTGTGATGCAGCTCTT 58.563 50.000 2.53 5.45 0.00 2.85
15 16 1.018226 GCGAAGTGTGATGCAGCTCT 61.018 55.000 2.53 0.00 0.00 4.09
16 17 1.423056 GCGAAGTGTGATGCAGCTC 59.577 57.895 2.53 0.00 0.00 4.09
17 18 2.037136 GGCGAAGTGTGATGCAGCT 61.037 57.895 2.53 0.00 0.00 4.24
18 19 1.855213 TTGGCGAAGTGTGATGCAGC 61.855 55.000 0.00 0.00 0.00 5.25
19 20 0.592637 TTTGGCGAAGTGTGATGCAG 59.407 50.000 0.00 0.00 0.00 4.41
20 21 0.310543 GTTTGGCGAAGTGTGATGCA 59.689 50.000 0.00 0.00 0.00 3.96
21 22 0.725784 CGTTTGGCGAAGTGTGATGC 60.726 55.000 0.00 0.00 44.77 3.91
22 23 3.366392 CGTTTGGCGAAGTGTGATG 57.634 52.632 0.00 0.00 44.77 3.07
32 33 2.680841 TGGGAGATTTATTCGTTTGGCG 59.319 45.455 0.00 0.00 43.01 5.69
33 34 4.712122 TTGGGAGATTTATTCGTTTGGC 57.288 40.909 0.00 0.00 0.00 4.52
34 35 6.267496 ACTTTGGGAGATTTATTCGTTTGG 57.733 37.500 0.00 0.00 0.00 3.28
35 36 7.367285 TGAACTTTGGGAGATTTATTCGTTTG 58.633 34.615 0.00 0.00 0.00 2.93
36 37 7.519032 TGAACTTTGGGAGATTTATTCGTTT 57.481 32.000 0.00 0.00 0.00 3.60
37 38 7.538575 CATGAACTTTGGGAGATTTATTCGTT 58.461 34.615 0.00 0.00 0.00 3.85
38 39 6.404734 GCATGAACTTTGGGAGATTTATTCGT 60.405 38.462 0.00 0.00 0.00 3.85
39 40 5.973565 GCATGAACTTTGGGAGATTTATTCG 59.026 40.000 0.00 0.00 0.00 3.34
40 41 6.276091 GGCATGAACTTTGGGAGATTTATTC 58.724 40.000 0.00 0.00 0.00 1.75
41 42 5.129320 GGGCATGAACTTTGGGAGATTTATT 59.871 40.000 0.00 0.00 0.00 1.40
42 43 4.651045 GGGCATGAACTTTGGGAGATTTAT 59.349 41.667 0.00 0.00 0.00 1.40
43 44 4.023291 GGGCATGAACTTTGGGAGATTTA 58.977 43.478 0.00 0.00 0.00 1.40
44 45 2.833943 GGGCATGAACTTTGGGAGATTT 59.166 45.455 0.00 0.00 0.00 2.17
45 46 2.460669 GGGCATGAACTTTGGGAGATT 58.539 47.619 0.00 0.00 0.00 2.40
46 47 1.683011 CGGGCATGAACTTTGGGAGAT 60.683 52.381 0.00 0.00 0.00 2.75
47 48 0.322456 CGGGCATGAACTTTGGGAGA 60.322 55.000 0.00 0.00 0.00 3.71
48 49 1.937546 GCGGGCATGAACTTTGGGAG 61.938 60.000 0.00 0.00 0.00 4.30
49 50 1.976474 GCGGGCATGAACTTTGGGA 60.976 57.895 0.00 0.00 0.00 4.37
50 51 1.814772 TTGCGGGCATGAACTTTGGG 61.815 55.000 0.00 0.00 0.00 4.12
51 52 0.033228 TTTGCGGGCATGAACTTTGG 59.967 50.000 0.00 0.00 0.00 3.28
52 53 2.083167 ATTTGCGGGCATGAACTTTG 57.917 45.000 0.00 0.00 0.00 2.77
53 54 3.951775 TTATTTGCGGGCATGAACTTT 57.048 38.095 0.00 0.00 0.00 2.66
54 55 3.951775 TTTATTTGCGGGCATGAACTT 57.048 38.095 0.00 0.00 0.00 2.66
55 56 3.951775 TTTTATTTGCGGGCATGAACT 57.048 38.095 0.00 0.00 0.00 3.01
56 57 5.544136 AATTTTTATTTGCGGGCATGAAC 57.456 34.783 0.00 0.00 0.00 3.18
57 58 5.582665 GGTAATTTTTATTTGCGGGCATGAA 59.417 36.000 0.00 0.00 0.00 2.57
58 59 5.112686 GGTAATTTTTATTTGCGGGCATGA 58.887 37.500 0.00 0.00 0.00 3.07
59 60 4.272261 GGGTAATTTTTATTTGCGGGCATG 59.728 41.667 0.00 0.00 0.00 4.06
60 61 4.080863 TGGGTAATTTTTATTTGCGGGCAT 60.081 37.500 0.00 0.00 0.00 4.40
61 62 3.260884 TGGGTAATTTTTATTTGCGGGCA 59.739 39.130 0.00 0.00 0.00 5.36
62 63 3.863041 TGGGTAATTTTTATTTGCGGGC 58.137 40.909 0.00 0.00 0.00 6.13
63 64 5.725362 TCTTGGGTAATTTTTATTTGCGGG 58.275 37.500 0.00 0.00 0.00 6.13
64 65 7.171678 TGTTTCTTGGGTAATTTTTATTTGCGG 59.828 33.333 0.00 0.00 0.00 5.69
65 66 8.077836 TGTTTCTTGGGTAATTTTTATTTGCG 57.922 30.769 0.00 0.00 0.00 4.85
66 67 9.877137 CTTGTTTCTTGGGTAATTTTTATTTGC 57.123 29.630 0.00 0.00 0.00 3.68
67 68 9.877137 GCTTGTTTCTTGGGTAATTTTTATTTG 57.123 29.630 0.00 0.00 0.00 2.32
68 69 9.062524 GGCTTGTTTCTTGGGTAATTTTTATTT 57.937 29.630 0.00 0.00 0.00 1.40
69 70 8.436778 AGGCTTGTTTCTTGGGTAATTTTTATT 58.563 29.630 0.00 0.00 0.00 1.40
70 71 7.973402 AGGCTTGTTTCTTGGGTAATTTTTAT 58.027 30.769 0.00 0.00 0.00 1.40
71 72 7.368198 AGGCTTGTTTCTTGGGTAATTTTTA 57.632 32.000 0.00 0.00 0.00 1.52
72 73 6.247229 AGGCTTGTTTCTTGGGTAATTTTT 57.753 33.333 0.00 0.00 0.00 1.94
73 74 5.887214 AGGCTTGTTTCTTGGGTAATTTT 57.113 34.783 0.00 0.00 0.00 1.82
74 75 6.987403 TTAGGCTTGTTTCTTGGGTAATTT 57.013 33.333 0.00 0.00 0.00 1.82
75 76 6.553476 ACTTTAGGCTTGTTTCTTGGGTAATT 59.447 34.615 0.00 0.00 0.00 1.40
76 77 6.075315 ACTTTAGGCTTGTTTCTTGGGTAAT 58.925 36.000 0.00 0.00 0.00 1.89
77 78 5.451354 ACTTTAGGCTTGTTTCTTGGGTAA 58.549 37.500 0.00 0.00 0.00 2.85
78 79 5.056553 ACTTTAGGCTTGTTTCTTGGGTA 57.943 39.130 0.00 0.00 0.00 3.69
79 80 3.910989 ACTTTAGGCTTGTTTCTTGGGT 58.089 40.909 0.00 0.00 0.00 4.51
80 81 4.937201 AACTTTAGGCTTGTTTCTTGGG 57.063 40.909 0.00 0.00 0.00 4.12
81 82 7.598869 GGATTAAACTTTAGGCTTGTTTCTTGG 59.401 37.037 13.47 0.00 35.77 3.61
82 83 7.326063 CGGATTAAACTTTAGGCTTGTTTCTTG 59.674 37.037 13.47 2.34 35.77 3.02
83 84 7.229907 TCGGATTAAACTTTAGGCTTGTTTCTT 59.770 33.333 13.47 5.87 35.77 2.52
84 85 6.713450 TCGGATTAAACTTTAGGCTTGTTTCT 59.287 34.615 13.47 6.00 35.77 2.52
85 86 6.905578 TCGGATTAAACTTTAGGCTTGTTTC 58.094 36.000 13.47 3.97 35.77 2.78
86 87 6.887626 TCGGATTAAACTTTAGGCTTGTTT 57.112 33.333 14.18 14.18 37.60 2.83
87 88 6.657541 TCATCGGATTAAACTTTAGGCTTGTT 59.342 34.615 0.00 0.00 0.00 2.83
88 89 6.093633 GTCATCGGATTAAACTTTAGGCTTGT 59.906 38.462 0.00 0.00 0.00 3.16
89 90 6.458342 GGTCATCGGATTAAACTTTAGGCTTG 60.458 42.308 0.00 0.00 0.00 4.01
90 91 5.589050 GGTCATCGGATTAAACTTTAGGCTT 59.411 40.000 0.00 0.00 0.00 4.35
91 92 5.123936 GGTCATCGGATTAAACTTTAGGCT 58.876 41.667 0.00 0.00 0.00 4.58
92 93 4.025145 CGGTCATCGGATTAAACTTTAGGC 60.025 45.833 0.00 0.00 34.75 3.93
93 94 5.353938 TCGGTCATCGGATTAAACTTTAGG 58.646 41.667 0.00 0.00 39.77 2.69
94 95 8.583810 TTATCGGTCATCGGATTAAACTTTAG 57.416 34.615 0.00 0.00 39.77 1.85
95 96 8.945481 TTTATCGGTCATCGGATTAAACTTTA 57.055 30.769 0.00 0.00 39.77 1.85
96 97 7.852971 TTTATCGGTCATCGGATTAAACTTT 57.147 32.000 0.00 0.00 39.77 2.66
97 98 7.852971 TTTTATCGGTCATCGGATTAAACTT 57.147 32.000 0.00 0.00 39.77 2.66
98 99 7.767198 TCTTTTTATCGGTCATCGGATTAAACT 59.233 33.333 0.00 0.00 39.77 2.66
99 100 7.912383 TCTTTTTATCGGTCATCGGATTAAAC 58.088 34.615 0.00 0.00 39.77 2.01
100 101 8.392612 GTTCTTTTTATCGGTCATCGGATTAAA 58.607 33.333 0.00 0.00 39.77 1.52
101 102 7.767198 AGTTCTTTTTATCGGTCATCGGATTAA 59.233 33.333 0.00 0.00 39.77 1.40
102 103 7.270047 AGTTCTTTTTATCGGTCATCGGATTA 58.730 34.615 0.00 0.00 39.77 1.75
103 104 6.113411 AGTTCTTTTTATCGGTCATCGGATT 58.887 36.000 0.00 0.00 39.77 3.01
104 105 5.671493 AGTTCTTTTTATCGGTCATCGGAT 58.329 37.500 0.00 0.00 39.77 4.18
105 106 5.080969 AGTTCTTTTTATCGGTCATCGGA 57.919 39.130 0.00 0.00 39.77 4.55
106 107 5.500290 CGAAGTTCTTTTTATCGGTCATCGG 60.500 44.000 0.56 0.00 39.77 4.18
107 108 5.481472 CGAAGTTCTTTTTATCGGTCATCG 58.519 41.667 0.56 0.00 40.90 3.84
108 109 5.796813 CCGAAGTTCTTTTTATCGGTCATC 58.203 41.667 0.56 0.00 45.96 2.92
109 110 5.796350 CCGAAGTTCTTTTTATCGGTCAT 57.204 39.130 0.56 0.00 45.96 3.06
114 115 2.669434 TCCGCCGAAGTTCTTTTTATCG 59.331 45.455 0.56 0.00 0.00 2.92
115 116 3.930848 TCTCCGCCGAAGTTCTTTTTATC 59.069 43.478 0.56 0.00 0.00 1.75
116 117 3.683340 GTCTCCGCCGAAGTTCTTTTTAT 59.317 43.478 0.56 0.00 0.00 1.40
117 118 3.062042 GTCTCCGCCGAAGTTCTTTTTA 58.938 45.455 0.56 0.00 0.00 1.52
118 119 1.871676 GTCTCCGCCGAAGTTCTTTTT 59.128 47.619 0.56 0.00 0.00 1.94
123 124 1.509703 AAAAGTCTCCGCCGAAGTTC 58.490 50.000 0.00 0.00 0.00 3.01
125 126 2.825861 TAAAAAGTCTCCGCCGAAGT 57.174 45.000 0.00 0.00 0.00 3.01
131 132 1.730064 TGTGCGATAAAAAGTCTCCGC 59.270 47.619 0.00 0.00 42.52 5.54
133 134 6.837992 TGTAATTGTGCGATAAAAAGTCTCC 58.162 36.000 0.00 0.00 0.00 3.71
142 143 9.800433 AATCAATTGAATGTAATTGTGCGATAA 57.200 25.926 13.09 0.00 44.47 1.75
144 145 7.166307 CGAATCAATTGAATGTAATTGTGCGAT 59.834 33.333 13.09 0.00 44.47 4.58
146 147 6.468637 TCGAATCAATTGAATGTAATTGTGCG 59.531 34.615 13.09 3.09 44.47 5.34
187 188 4.123497 TGTGAAAGGAGACATATGGACG 57.877 45.455 7.80 0.00 0.00 4.79
221 222 6.436261 CAATGCAGCTATATTTCAGACCTTG 58.564 40.000 0.00 0.00 0.00 3.61
245 246 4.809426 GGGATATAGTATTATGCGTGGTGC 59.191 45.833 0.00 0.00 46.70 5.01
252 253 8.904099 AATAAAGCCGGGATATAGTATTATGC 57.096 34.615 2.18 0.00 0.00 3.14
260 261 3.195661 GCCGAATAAAGCCGGGATATAG 58.804 50.000 2.18 0.00 45.42 1.31
287 288 1.348250 CGCACGCACGCAATATTCT 59.652 52.632 0.00 0.00 0.00 2.40
296 297 3.827784 GAGTAGCACGCACGCACG 61.828 66.667 0.00 0.00 39.50 5.34
297 298 3.479269 GGAGTAGCACGCACGCAC 61.479 66.667 0.00 0.00 0.00 5.34
1180 1181 1.122019 GGCGGGTGATGTAGAGGGAT 61.122 60.000 0.00 0.00 0.00 3.85
1188 1189 2.621672 ATCTAGGGGGCGGGTGATGT 62.622 60.000 0.00 0.00 0.00 3.06
1193 1194 2.440817 CGAAATCTAGGGGGCGGGT 61.441 63.158 0.00 0.00 0.00 5.28
1318 1426 2.787035 TCCTAATACCCCAATTCACCCC 59.213 50.000 0.00 0.00 0.00 4.95
1343 1451 6.587608 CACTAACAGCTTCCCAATCAAAATTC 59.412 38.462 0.00 0.00 0.00 2.17
1398 1506 0.996462 AATGTACGATTCACCACGCG 59.004 50.000 3.53 3.53 0.00 6.01
1401 1509 5.382303 CAACTCAAATGTACGATTCACCAC 58.618 41.667 0.00 0.00 0.00 4.16
1469 1577 0.321564 CTGATTGACGCAGGGGTGAA 60.322 55.000 0.00 0.00 0.00 3.18
1484 1592 2.369203 CTGGACAGATGGCATCTCTGAT 59.631 50.000 26.62 12.72 42.22 2.90
1517 1628 9.162764 TGCATTTCTTAGAACTATGAACTAACC 57.837 33.333 9.96 0.00 31.61 2.85
1584 1695 2.698797 GTCAAGCAGGCCCTATACACTA 59.301 50.000 0.00 0.00 0.00 2.74
1608 1724 8.679100 GTGTAGAGACTTCTCAGAAGCTAATTA 58.321 37.037 14.81 4.39 45.21 1.40
1631 1747 8.863872 ATTAGCCACAAAGAGTAAAATAGTGT 57.136 30.769 0.00 0.00 0.00 3.55
1821 1943 1.174783 GCCGTCAACTAGAGAGGACA 58.825 55.000 0.00 0.00 0.00 4.02
1827 1949 4.106197 GTCATGTAAGCCGTCAACTAGAG 58.894 47.826 0.00 0.00 0.00 2.43
1904 2026 5.319140 TCCATCTTATCGTTTCGTTCTCA 57.681 39.130 0.00 0.00 0.00 3.27
1905 2027 6.255887 ACATTCCATCTTATCGTTTCGTTCTC 59.744 38.462 0.00 0.00 0.00 2.87
1906 2028 6.106673 ACATTCCATCTTATCGTTTCGTTCT 58.893 36.000 0.00 0.00 0.00 3.01
1907 2029 6.345920 ACATTCCATCTTATCGTTTCGTTC 57.654 37.500 0.00 0.00 0.00 3.95
1908 2030 6.737254 AACATTCCATCTTATCGTTTCGTT 57.263 33.333 0.00 0.00 0.00 3.85
1909 2031 7.201582 GGTTAACATTCCATCTTATCGTTTCGT 60.202 37.037 8.10 0.00 0.00 3.85
1910 2032 7.123830 GGTTAACATTCCATCTTATCGTTTCG 58.876 38.462 8.10 0.00 0.00 3.46
1911 2033 7.981142 TGGTTAACATTCCATCTTATCGTTTC 58.019 34.615 8.10 0.00 0.00 2.78
1912 2034 7.067008 CCTGGTTAACATTCCATCTTATCGTTT 59.933 37.037 8.10 0.00 33.01 3.60
1913 2035 6.542370 CCTGGTTAACATTCCATCTTATCGTT 59.458 38.462 8.10 0.00 33.01 3.85
1914 2036 6.055588 CCTGGTTAACATTCCATCTTATCGT 58.944 40.000 8.10 0.00 33.01 3.73
1915 2037 5.049405 GCCTGGTTAACATTCCATCTTATCG 60.049 44.000 8.10 0.00 33.01 2.92
1916 2038 5.827797 TGCCTGGTTAACATTCCATCTTATC 59.172 40.000 8.10 0.00 33.01 1.75
1917 2039 5.765510 TGCCTGGTTAACATTCCATCTTAT 58.234 37.500 8.10 0.00 33.01 1.73
1954 2090 9.547753 GAAGCTGGACTATGTAATCTGAATAAA 57.452 33.333 0.00 0.00 0.00 1.40
2236 2379 7.164803 TCATACAGATGAATACACCAACAACA 58.835 34.615 0.00 0.00 39.20 3.33
2237 2380 7.609760 TCATACAGATGAATACACCAACAAC 57.390 36.000 0.00 0.00 39.20 3.32
2238 2381 6.316140 GCTCATACAGATGAATACACCAACAA 59.684 38.462 0.00 0.00 41.62 2.83
2393 3021 6.818142 GTGCAAGGATAAAGTTTGCCATAAAT 59.182 34.615 10.74 0.00 44.91 1.40
2779 3411 2.806608 AGCTGAAACAGTTGCATTGG 57.193 45.000 0.00 0.00 33.43 3.16
2875 3507 1.963515 GCATGAAGACCCAAAGTGGTT 59.036 47.619 0.00 0.00 39.24 3.67
3350 3982 5.692204 GGTTATTCACATATCAGGTGACTCG 59.308 44.000 0.00 0.00 44.38 4.18
3516 4148 5.705609 TTCTTTACCAATCAAAGCTGACC 57.294 39.130 0.00 0.00 33.30 4.02
3575 4207 1.041437 GGATGTAGTCCCTTCGGAGG 58.959 60.000 1.30 1.30 41.50 4.30
3585 4217 2.035066 GCAATGGCCAATGGATGTAGTC 59.965 50.000 22.24 0.00 0.00 2.59
3586 4218 2.034124 GCAATGGCCAATGGATGTAGT 58.966 47.619 22.24 0.00 0.00 2.73
3587 4219 2.033372 TGCAATGGCCAATGGATGTAG 58.967 47.619 22.24 0.00 40.13 2.74
3588 4220 1.755959 GTGCAATGGCCAATGGATGTA 59.244 47.619 22.24 7.61 40.13 2.29
3589 4221 0.538118 GTGCAATGGCCAATGGATGT 59.462 50.000 22.24 0.00 40.13 3.06
3590 4222 0.828022 AGTGCAATGGCCAATGGATG 59.172 50.000 22.24 11.46 40.13 3.51
3591 4223 2.457813 TAGTGCAATGGCCAATGGAT 57.542 45.000 22.24 11.73 40.13 3.41
3611 4243 2.088423 ACTCAAGGCAACACAAACGAA 58.912 42.857 0.00 0.00 41.41 3.85
3614 4246 3.438360 CAGAACTCAAGGCAACACAAAC 58.562 45.455 0.00 0.00 41.41 2.93
3682 4314 2.042464 AGGTCAAGAGTCAAGACTGCA 58.958 47.619 7.57 0.00 42.66 4.41
3953 4585 7.330208 GCAACGAGTATGGGTATTATTAACGAT 59.670 37.037 0.00 0.00 0.00 3.73
3956 4588 6.707161 TGGCAACGAGTATGGGTATTATTAAC 59.293 38.462 0.00 0.00 42.51 2.01
4183 4816 1.066430 GGTCATCCCGTAGCTGAAACA 60.066 52.381 0.00 0.00 0.00 2.83
4351 4984 5.557866 ACACAAAGAGTAATACTGTTCCCC 58.442 41.667 3.21 0.00 29.69 4.81
4431 5066 8.385111 TCCGTAAAGAAATATAAGAGCGTTTTG 58.615 33.333 0.00 0.00 0.00 2.44
4633 5268 2.503765 ACCCACAATCATCGACCATACA 59.496 45.455 0.00 0.00 0.00 2.29
4780 5415 9.085645 TCTCTACAAACTAGAATTCCAAGTACA 57.914 33.333 10.56 0.00 0.00 2.90
4817 5452 0.109342 AAGGGACAGCAGAACACCAG 59.891 55.000 0.00 0.00 0.00 4.00
5026 5661 7.132863 CCTACAGAAAAGTTTAGTGAAGTTGC 58.867 38.462 4.54 0.00 31.32 4.17
5117 5752 3.902261 TGTGCAGCATTACAACAAGAG 57.098 42.857 0.00 0.00 0.00 2.85
5165 5800 8.354426 TGGCATATCACTTGACATCATTTATTG 58.646 33.333 0.00 0.00 0.00 1.90
5304 5941 6.842807 AGACTTATATTTAGGAACGGAGGGAA 59.157 38.462 0.00 0.00 0.00 3.97
5439 6076 1.215173 TCCGGACGGAGGGAGTATAAA 59.785 52.381 9.76 0.00 39.76 1.40
5443 6080 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
5444 6081 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
5445 6082 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
5446 6083 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
5447 6084 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
5448 6085 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
5449 6086 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
5450 6087 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
5451 6088 1.997606 GTGACAAGTATTTCCGGACGG 59.002 52.381 1.83 3.96 0.00 4.79
5452 6089 1.997606 GGTGACAAGTATTTCCGGACG 59.002 52.381 1.83 0.00 0.00 4.79
5453 6090 3.048337 TGGTGACAAGTATTTCCGGAC 57.952 47.619 1.83 0.00 37.44 4.79
5466 6103 4.530161 CCCCTTTTATCCATTTTGGTGACA 59.470 41.667 0.00 0.00 39.03 3.58
5467 6104 4.775253 TCCCCTTTTATCCATTTTGGTGAC 59.225 41.667 0.00 0.00 39.03 3.67
5468 6105 5.017093 TCCCCTTTTATCCATTTTGGTGA 57.983 39.130 0.00 0.00 39.03 4.02
5469 6106 5.189539 ACATCCCCTTTTATCCATTTTGGTG 59.810 40.000 0.00 0.00 39.03 4.17
5470 6107 5.349690 ACATCCCCTTTTATCCATTTTGGT 58.650 37.500 0.00 0.00 39.03 3.67
5471 6108 5.955961 ACATCCCCTTTTATCCATTTTGG 57.044 39.130 0.00 0.00 39.43 3.28
5472 6109 8.482852 AGATACATCCCCTTTTATCCATTTTG 57.517 34.615 0.00 0.00 0.00 2.44
5473 6110 9.813826 CTAGATACATCCCCTTTTATCCATTTT 57.186 33.333 0.00 0.00 0.00 1.82
5474 6111 9.182642 TCTAGATACATCCCCTTTTATCCATTT 57.817 33.333 0.00 0.00 0.00 2.32
5475 6112 8.757307 TCTAGATACATCCCCTTTTATCCATT 57.243 34.615 0.00 0.00 0.00 3.16
5476 6113 8.776119 CATCTAGATACATCCCCTTTTATCCAT 58.224 37.037 4.54 0.00 0.00 3.41
5477 6114 7.739444 ACATCTAGATACATCCCCTTTTATCCA 59.261 37.037 4.54 0.00 0.00 3.41
5478 6115 8.152023 ACATCTAGATACATCCCCTTTTATCC 57.848 38.462 4.54 0.00 0.00 2.59
5485 6122 9.845214 ACTAAAATACATCTAGATACATCCCCT 57.155 33.333 4.54 0.00 0.00 4.79
5531 6168 8.840321 CCGAAAATACTTGTCATCTAAATGGAT 58.160 33.333 0.00 0.00 33.42 3.41
5532 6169 8.044309 TCCGAAAATACTTGTCATCTAAATGGA 58.956 33.333 0.00 0.00 33.42 3.41
5533 6170 8.122952 GTCCGAAAATACTTGTCATCTAAATGG 58.877 37.037 0.00 0.00 33.42 3.16
5534 6171 8.664798 TGTCCGAAAATACTTGTCATCTAAATG 58.335 33.333 0.00 0.00 0.00 2.32
5535 6172 8.786826 TGTCCGAAAATACTTGTCATCTAAAT 57.213 30.769 0.00 0.00 0.00 1.40
5536 6173 8.092068 TCTGTCCGAAAATACTTGTCATCTAAA 58.908 33.333 0.00 0.00 0.00 1.85
5537 6174 7.608153 TCTGTCCGAAAATACTTGTCATCTAA 58.392 34.615 0.00 0.00 0.00 2.10
5538 6175 7.165460 TCTGTCCGAAAATACTTGTCATCTA 57.835 36.000 0.00 0.00 0.00 1.98
5539 6176 6.037786 TCTGTCCGAAAATACTTGTCATCT 57.962 37.500 0.00 0.00 0.00 2.90
5540 6177 5.292101 CCTCTGTCCGAAAATACTTGTCATC 59.708 44.000 0.00 0.00 0.00 2.92
5541 6178 5.178797 CCTCTGTCCGAAAATACTTGTCAT 58.821 41.667 0.00 0.00 0.00 3.06
5542 6179 4.562757 CCCTCTGTCCGAAAATACTTGTCA 60.563 45.833 0.00 0.00 0.00 3.58
5543 6180 3.933332 CCCTCTGTCCGAAAATACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
5544 6181 3.581332 TCCCTCTGTCCGAAAATACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
5545 6182 4.184629 CTCCCTCTGTCCGAAAATACTTG 58.815 47.826 0.00 0.00 0.00 3.16
5546 6183 3.838903 ACTCCCTCTGTCCGAAAATACTT 59.161 43.478 0.00 0.00 0.00 2.24
5547 6184 3.442076 ACTCCCTCTGTCCGAAAATACT 58.558 45.455 0.00 0.00 0.00 2.12
5548 6185 3.889520 ACTCCCTCTGTCCGAAAATAC 57.110 47.619 0.00 0.00 0.00 1.89
5549 6186 6.555463 AAATACTCCCTCTGTCCGAAAATA 57.445 37.500 0.00 0.00 0.00 1.40
5550 6187 5.437191 AAATACTCCCTCTGTCCGAAAAT 57.563 39.130 0.00 0.00 0.00 1.82
5551 6188 4.903045 AAATACTCCCTCTGTCCGAAAA 57.097 40.909 0.00 0.00 0.00 2.29
5552 6189 4.404715 CCTAAATACTCCCTCTGTCCGAAA 59.595 45.833 0.00 0.00 0.00 3.46
5553 6190 3.958798 CCTAAATACTCCCTCTGTCCGAA 59.041 47.826 0.00 0.00 0.00 4.30
5554 6191 3.203710 TCCTAAATACTCCCTCTGTCCGA 59.796 47.826 0.00 0.00 0.00 4.55
5555 6192 3.563223 TCCTAAATACTCCCTCTGTCCG 58.437 50.000 0.00 0.00 0.00 4.79
5556 6193 4.202131 CGTTCCTAAATACTCCCTCTGTCC 60.202 50.000 0.00 0.00 0.00 4.02
5557 6194 4.202131 CCGTTCCTAAATACTCCCTCTGTC 60.202 50.000 0.00 0.00 0.00 3.51
5558 6195 3.705072 CCGTTCCTAAATACTCCCTCTGT 59.295 47.826 0.00 0.00 0.00 3.41
5559 6196 3.958798 TCCGTTCCTAAATACTCCCTCTG 59.041 47.826 0.00 0.00 0.00 3.35
5560 6197 4.216708 CTCCGTTCCTAAATACTCCCTCT 58.783 47.826 0.00 0.00 0.00 3.69
5561 6198 3.321396 CCTCCGTTCCTAAATACTCCCTC 59.679 52.174 0.00 0.00 0.00 4.30
5562 6199 3.306613 CCTCCGTTCCTAAATACTCCCT 58.693 50.000 0.00 0.00 0.00 4.20
5563 6200 2.367894 CCCTCCGTTCCTAAATACTCCC 59.632 54.545 0.00 0.00 0.00 4.30
5564 6201 3.303049 TCCCTCCGTTCCTAAATACTCC 58.697 50.000 0.00 0.00 0.00 3.85
5565 6202 3.959449 ACTCCCTCCGTTCCTAAATACTC 59.041 47.826 0.00 0.00 0.00 2.59
5566 6203 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
5567 6204 6.350027 GCTATACTCCCTCCGTTCCTAAATAC 60.350 46.154 0.00 0.00 0.00 1.89
5611 6249 4.096984 CAGCCCACCAATCAACTATTCTTC 59.903 45.833 0.00 0.00 0.00 2.87
5727 6365 6.453092 ACGAGTATAACAAGTTTGCAGTACT 58.547 36.000 0.00 0.00 0.00 2.73
7022 7663 7.653311 TCAAATGTCAACTATATCATCCTCACG 59.347 37.037 0.00 0.00 0.00 4.35
7175 7816 3.632145 GTCTTCCAAAGAAAGGAACTGCA 59.368 43.478 0.00 0.00 40.11 4.41
7438 8079 7.386059 TGCACTACTGAGAAATGAAAGATACA 58.614 34.615 0.00 0.00 0.00 2.29
7455 8096 5.835113 AAAGAACACAACAATGCACTACT 57.165 34.783 0.00 0.00 0.00 2.57
7462 8103 6.168164 AGCAAACAAAAGAACACAACAATG 57.832 33.333 0.00 0.00 0.00 2.82
7671 8312 6.403866 AAATAACAAAGACAGCATTCCACA 57.596 33.333 0.00 0.00 0.00 4.17
7810 8451 6.542821 ACCTTTCCAGATTCAACATCTGTAA 58.457 36.000 10.26 0.00 42.88 2.41
7811 8452 6.126863 ACCTTTCCAGATTCAACATCTGTA 57.873 37.500 10.26 0.00 42.88 2.74
7892 8533 7.881775 AGACTAAACCTTTCAAACAGAACAT 57.118 32.000 0.00 0.00 35.56 2.71
7971 8612 1.269998 ACTCTCGAAGAAGTTGTCCCG 59.730 52.381 2.28 0.00 34.09 5.14
8045 8686 8.637099 TCTGATCTCTAACAGATGAATACTTGG 58.363 37.037 0.00 0.00 42.48 3.61
8106 8747 3.181477 GCAGAGATACAGATGCTGACACT 60.181 47.826 0.82 0.00 35.78 3.55
8113 8754 3.069300 TCTCCAAGCAGAGATACAGATGC 59.931 47.826 0.00 0.00 37.98 3.91
8120 8761 3.404869 TCCCTTCTCCAAGCAGAGATA 57.595 47.619 2.43 0.00 42.38 1.98
8132 8773 3.313803 GCGATTTTCAGGATTCCCTTCTC 59.686 47.826 0.00 0.00 42.02 2.87
8143 8784 1.717937 CAGCCGAGCGATTTTCAGG 59.282 57.895 0.00 0.00 0.00 3.86
8188 8829 7.587037 TGAAGTTCTGAAAACCATTCTTCAT 57.413 32.000 11.17 0.00 34.29 2.57
8327 8968 2.437359 GTGATTCTGCAGGGCGCT 60.437 61.111 15.13 0.00 43.06 5.92
8332 8973 0.824109 TCTACGGGTGATTCTGCAGG 59.176 55.000 15.13 0.00 0.00 4.85
8427 9074 3.136009 ACTTCTAAGGGGGAAAACACG 57.864 47.619 0.00 0.00 0.00 4.49
8431 9078 6.518516 TGTTCTAACTTCTAAGGGGGAAAA 57.481 37.500 0.00 0.00 0.00 2.29
8432 9079 6.713731 ATGTTCTAACTTCTAAGGGGGAAA 57.286 37.500 0.00 0.00 0.00 3.13
8435 9082 6.062258 TCAATGTTCTAACTTCTAAGGGGG 57.938 41.667 0.00 0.00 0.00 5.40
8436 9083 7.168905 AGTTCAATGTTCTAACTTCTAAGGGG 58.831 38.462 0.00 0.00 29.25 4.79
8457 9104 6.393171 CAAATCCTTTTGATTCCCAGAGTTC 58.607 40.000 0.00 0.00 42.97 3.01
8460 9107 4.774200 ACCAAATCCTTTTGATTCCCAGAG 59.226 41.667 0.19 0.00 42.97 3.35
8465 9112 5.659440 TGCTACCAAATCCTTTTGATTCC 57.341 39.130 0.19 0.00 42.97 3.01
8558 9205 2.514824 GATGGGCAAGGGCGTCTC 60.515 66.667 0.00 0.00 42.47 3.36
8559 9206 3.011517 AGATGGGCAAGGGCGTCT 61.012 61.111 0.00 0.00 42.47 4.18
8560 9207 2.825836 CAGATGGGCAAGGGCGTC 60.826 66.667 0.00 0.00 42.47 5.19
8561 9208 4.431131 CCAGATGGGCAAGGGCGT 62.431 66.667 0.00 0.00 42.47 5.68
8596 9244 2.480037 GTCATCATGTCACGTGCTTTCA 59.520 45.455 11.67 7.77 0.00 2.69
8604 9252 0.723414 GCCTGTGTCATCATGTCACG 59.277 55.000 9.98 5.52 38.85 4.35
8605 9253 1.089920 GGCCTGTGTCATCATGTCAC 58.910 55.000 7.97 7.97 37.03 3.67
8642 9290 4.494091 TGATCTCTTGTTGGGGAGAATC 57.506 45.455 0.00 0.00 41.16 2.52
8648 9296 1.565759 TCCCATGATCTCTTGTTGGGG 59.434 52.381 6.46 0.00 45.87 4.96
8767 9416 7.277981 AGCTTCGAGTATGAATTCGTTTATGTT 59.722 33.333 5.29 0.00 36.35 2.71
8769 9418 7.043391 TCAGCTTCGAGTATGAATTCGTTTATG 60.043 37.037 5.29 0.00 36.35 1.90
8774 9423 4.106197 GTCAGCTTCGAGTATGAATTCGT 58.894 43.478 5.33 5.33 36.35 3.85
8777 9426 4.355437 CTCGTCAGCTTCGAGTATGAATT 58.645 43.478 22.33 0.00 46.22 2.17
8814 9463 4.261114 CGCACATCACATAATGCATACCAA 60.261 41.667 0.00 0.00 37.97 3.67
8872 9529 5.888161 ACAAGAGACTTGTGACCTTCAATTT 59.112 36.000 14.90 0.00 0.00 1.82
8873 9530 5.440610 ACAAGAGACTTGTGACCTTCAATT 58.559 37.500 14.90 0.00 0.00 2.32
8919 9576 9.772973 TGAAGATATACGGCAAAATACTGTAAT 57.227 29.630 0.00 0.00 32.82 1.89
8920 9577 9.037737 GTGAAGATATACGGCAAAATACTGTAA 57.962 33.333 0.00 0.00 32.82 2.41
8921 9578 7.654520 GGTGAAGATATACGGCAAAATACTGTA 59.345 37.037 0.00 0.00 33.57 2.74
8922 9579 6.482308 GGTGAAGATATACGGCAAAATACTGT 59.518 38.462 0.00 0.00 0.00 3.55
8923 9580 6.481976 TGGTGAAGATATACGGCAAAATACTG 59.518 38.462 0.00 0.00 0.00 2.74
8924 9581 6.588204 TGGTGAAGATATACGGCAAAATACT 58.412 36.000 0.00 0.00 0.00 2.12
8925 9582 6.854496 TGGTGAAGATATACGGCAAAATAC 57.146 37.500 0.00 0.00 0.00 1.89
8934 9591 7.328005 CAGATGTTCAGATGGTGAAGATATACG 59.672 40.741 0.00 0.00 46.53 3.06
8935 9592 8.363390 TCAGATGTTCAGATGGTGAAGATATAC 58.637 37.037 0.00 0.00 46.53 1.47
8959 9616 5.306160 AGCACCTAGTGGTAAACTAAACTCA 59.694 40.000 0.00 0.00 46.60 3.41
8992 9649 2.493278 TGGTGTTAGTTACCTCCGTAGC 59.507 50.000 0.00 0.00 39.01 3.58
8993 9650 3.760684 ACTGGTGTTAGTTACCTCCGTAG 59.239 47.826 0.00 0.00 39.01 3.51
8994 9651 3.766545 ACTGGTGTTAGTTACCTCCGTA 58.233 45.455 0.00 0.00 39.01 4.02
8995 9652 2.601905 ACTGGTGTTAGTTACCTCCGT 58.398 47.619 0.00 0.00 39.01 4.69
8996 9653 3.672767 AACTGGTGTTAGTTACCTCCG 57.327 47.619 0.00 0.00 39.03 4.63
8997 9654 5.406477 CGTTTAACTGGTGTTAGTTACCTCC 59.594 44.000 0.00 0.00 41.46 4.30
8998 9655 5.985530 ACGTTTAACTGGTGTTAGTTACCTC 59.014 40.000 0.00 0.00 41.46 3.85
8999 9656 5.917462 ACGTTTAACTGGTGTTAGTTACCT 58.083 37.500 0.00 0.00 41.46 3.08
9000 9657 5.177511 GGACGTTTAACTGGTGTTAGTTACC 59.822 44.000 0.00 0.00 41.46 2.85
9001 9658 5.107875 CGGACGTTTAACTGGTGTTAGTTAC 60.108 44.000 0.00 0.00 41.46 2.50
9002 9659 4.981674 CGGACGTTTAACTGGTGTTAGTTA 59.018 41.667 0.00 0.00 41.01 2.24
9003 9660 3.803778 CGGACGTTTAACTGGTGTTAGTT 59.196 43.478 0.00 0.00 43.03 2.24
9004 9661 3.383761 CGGACGTTTAACTGGTGTTAGT 58.616 45.455 0.00 0.00 39.49 2.24
9005 9662 2.156310 GCGGACGTTTAACTGGTGTTAG 59.844 50.000 0.00 0.00 39.49 2.34
9006 9663 2.134346 GCGGACGTTTAACTGGTGTTA 58.866 47.619 0.00 0.00 37.59 2.41
9007 9664 0.939419 GCGGACGTTTAACTGGTGTT 59.061 50.000 0.00 0.00 39.98 3.32
9008 9665 0.179078 TGCGGACGTTTAACTGGTGT 60.179 50.000 0.00 0.00 0.00 4.16
9009 9666 0.938713 TTGCGGACGTTTAACTGGTG 59.061 50.000 0.00 0.00 0.00 4.17
9010 9667 1.666054 TTTGCGGACGTTTAACTGGT 58.334 45.000 0.00 0.00 0.00 4.00
9011 9668 2.981400 ATTTGCGGACGTTTAACTGG 57.019 45.000 0.00 0.00 0.00 4.00
9012 9669 5.623335 TGAATATTTGCGGACGTTTAACTG 58.377 37.500 0.00 0.00 0.00 3.16
9013 9670 5.410439 ACTGAATATTTGCGGACGTTTAACT 59.590 36.000 0.00 0.00 0.00 2.24
9014 9671 5.506832 CACTGAATATTTGCGGACGTTTAAC 59.493 40.000 0.00 0.00 0.00 2.01
9015 9672 5.408909 TCACTGAATATTTGCGGACGTTTAA 59.591 36.000 0.00 0.00 0.00 1.52
9016 9673 4.930405 TCACTGAATATTTGCGGACGTTTA 59.070 37.500 0.00 0.00 0.00 2.01
9017 9674 3.749088 TCACTGAATATTTGCGGACGTTT 59.251 39.130 0.00 0.00 0.00 3.60
9018 9675 3.331150 TCACTGAATATTTGCGGACGTT 58.669 40.909 0.00 0.00 0.00 3.99
9019 9676 2.967362 TCACTGAATATTTGCGGACGT 58.033 42.857 0.00 0.00 0.00 4.34
9020 9677 4.142902 ACTTTCACTGAATATTTGCGGACG 60.143 41.667 0.00 0.00 0.00 4.79
9021 9678 5.296813 ACTTTCACTGAATATTTGCGGAC 57.703 39.130 0.00 0.00 0.00 4.79
9022 9679 5.545658 GACTTTCACTGAATATTTGCGGA 57.454 39.130 0.00 0.00 0.00 5.54
9397 10054 6.792473 TCCCATCATATTGTATTGTACTCCCT 59.208 38.462 0.00 0.00 0.00 4.20
9398 10055 7.016153 TCCCATCATATTGTATTGTACTCCC 57.984 40.000 0.00 0.00 0.00 4.30
9399 10056 8.553459 CTTCCCATCATATTGTATTGTACTCC 57.447 38.462 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.