Multiple sequence alignment - TraesCS6A01G315800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G315800 chr6A 100.000 2763 0 0 1 2763 552483660 552486422 0.000000e+00 5103.0
1 TraesCS6A01G315800 chr6D 91.304 2829 142 45 1 2763 406104220 406107010 0.000000e+00 3766.0
2 TraesCS6A01G315800 chr6D 93.706 143 5 2 108 246 406001659 406001801 7.750000e-51 211.0
3 TraesCS6A01G315800 chr6D 76.045 359 56 17 2242 2578 413068975 413069325 2.850000e-35 159.0
4 TraesCS6A01G315800 chr6B 90.351 2052 87 45 1 1992 609924169 609926169 0.000000e+00 2590.0
5 TraesCS6A01G315800 chr6B 88.429 700 59 5 1984 2661 609926554 609927253 0.000000e+00 824.0
6 TraesCS6A01G315800 chr6B 91.765 85 6 1 2679 2763 609967467 609967550 1.740000e-22 117.0
7 TraesCS6A01G315800 chr6B 90.909 44 3 1 2584 2626 374029677 374029720 1.070000e-04 58.4
8 TraesCS6A01G315800 chr6B 90.909 44 3 1 2584 2626 651612831 651612788 1.070000e-04 58.4
9 TraesCS6A01G315800 chr6B 85.455 55 7 1 2582 2635 527033744 527033690 3.840000e-04 56.5
10 TraesCS6A01G315800 chr5B 82.971 276 35 7 2170 2439 319334303 319334034 3.560000e-59 239.0
11 TraesCS6A01G315800 chr5B 84.127 126 20 0 2453 2578 67180025 67179900 3.740000e-24 122.0
12 TraesCS6A01G315800 chr1A 77.740 292 47 13 2291 2578 281648469 281648192 2.200000e-36 163.0
13 TraesCS6A01G315800 chr1D 78.157 293 35 15 2291 2578 218891858 218891590 2.850000e-35 159.0
14 TraesCS6A01G315800 chr1D 77.049 183 32 7 2390 2572 386811044 386811216 2.260000e-16 97.1
15 TraesCS6A01G315800 chr1D 100.000 29 0 0 2584 2612 383804980 383805008 1.000000e-03 54.7
16 TraesCS6A01G315800 chr5A 75.949 316 56 14 2281 2578 475830643 475830330 7.980000e-31 145.0
17 TraesCS6A01G315800 chr2B 76.678 283 49 3 2297 2562 450448841 450448559 1.030000e-29 141.0
18 TraesCS6A01G315800 chr2D 100.000 29 0 0 2584 2612 454934956 454934984 1.000000e-03 54.7
19 TraesCS6A01G315800 chr5D 94.118 34 2 0 2576 2609 424562344 424562377 5.000000e-03 52.8
20 TraesCS6A01G315800 chr4B 87.234 47 5 1 2584 2629 370691290 370691244 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G315800 chr6A 552483660 552486422 2762 False 5103 5103 100.000 1 2763 1 chr6A.!!$F1 2762
1 TraesCS6A01G315800 chr6D 406104220 406107010 2790 False 3766 3766 91.304 1 2763 1 chr6D.!!$F2 2762
2 TraesCS6A01G315800 chr6B 609924169 609927253 3084 False 1707 2590 89.390 1 2661 2 chr6B.!!$F3 2660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
359 366 0.030705 TCTCCTAGCAGGGCATCCTT 60.031 55.0 2.86 0.0 42.67 3.36 F
360 367 0.108207 CTCCTAGCAGGGCATCCTTG 59.892 60.0 2.86 0.0 42.67 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1441 1496 1.203523 ACAGTCACCTCGAGCTTCATC 59.796 52.381 6.99 0.0 0.0 2.92 R
2229 2709 1.217244 GAGGCGGCCGAGAAGTTAA 59.783 57.895 33.48 0.0 0.0 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 6.566564 GCAAGTATACATGATCCCATTTCACG 60.567 42.308 12.15 0.00 0.00 4.35
45 46 2.031258 TTCACGCACAGGAGACAAAA 57.969 45.000 0.00 0.00 0.00 2.44
51 52 2.602933 CGCACAGGAGACAAAATGTGTG 60.603 50.000 6.10 4.89 44.68 3.82
53 54 3.181487 GCACAGGAGACAAAATGTGTGTT 60.181 43.478 6.10 0.00 43.84 3.32
55 56 3.181487 ACAGGAGACAAAATGTGTGTTGC 60.181 43.478 0.00 0.00 41.96 4.17
57 58 2.100584 GGAGACAAAATGTGTGTTGCCA 59.899 45.455 0.00 0.00 41.96 4.92
59 60 2.159114 AGACAAAATGTGTGTTGCCACC 60.159 45.455 0.00 0.00 41.96 4.61
60 61 1.830477 ACAAAATGTGTGTTGCCACCT 59.170 42.857 0.00 0.00 39.72 4.00
61 62 2.235898 ACAAAATGTGTGTTGCCACCTT 59.764 40.909 0.00 0.00 39.72 3.50
65 68 1.388547 TGTGTGTTGCCACCTTCTTC 58.611 50.000 0.00 0.00 41.09 2.87
244 251 1.737838 TCACTTTGGCCGATTGCTAG 58.262 50.000 0.00 0.00 40.92 3.42
245 252 1.003118 TCACTTTGGCCGATTGCTAGT 59.997 47.619 0.00 0.00 40.92 2.57
246 253 2.235155 TCACTTTGGCCGATTGCTAGTA 59.765 45.455 0.00 0.00 40.92 1.82
247 254 2.351726 CACTTTGGCCGATTGCTAGTAC 59.648 50.000 0.00 0.00 40.92 2.73
276 283 1.001487 CATGTGAAAAGAAGCCGCACA 60.001 47.619 0.00 0.00 42.79 4.57
277 284 0.380378 TGTGAAAAGAAGCCGCACAC 59.620 50.000 0.00 0.00 34.85 3.82
289 296 1.600023 CCGCACACCTAAAAAGGACA 58.400 50.000 0.00 0.00 0.00 4.02
300 307 2.420058 AAAAGGACAGAATAGCCGGG 57.580 50.000 2.18 0.00 0.00 5.73
359 366 0.030705 TCTCCTAGCAGGGCATCCTT 60.031 55.000 2.86 0.00 42.67 3.36
360 367 0.108207 CTCCTAGCAGGGCATCCTTG 59.892 60.000 2.86 0.00 42.67 3.61
361 368 0.621571 TCCTAGCAGGGCATCCTTGT 60.622 55.000 2.86 0.00 42.67 3.16
362 369 0.257039 CCTAGCAGGGCATCCTTGTT 59.743 55.000 0.00 0.00 42.67 2.83
363 370 1.386533 CTAGCAGGGCATCCTTGTTG 58.613 55.000 0.00 0.00 42.67 3.33
366 373 0.968405 GCAGGGCATCCTTGTTGAAA 59.032 50.000 0.00 0.00 42.67 2.69
367 374 1.344114 GCAGGGCATCCTTGTTGAAAA 59.656 47.619 0.00 0.00 42.67 2.29
368 375 2.224257 GCAGGGCATCCTTGTTGAAAAA 60.224 45.455 0.00 0.00 42.67 1.94
369 376 3.392882 CAGGGCATCCTTGTTGAAAAAC 58.607 45.455 0.00 0.00 42.67 2.43
370 377 3.037549 AGGGCATCCTTGTTGAAAAACA 58.962 40.909 0.00 0.00 41.56 2.83
371 378 3.454082 AGGGCATCCTTGTTGAAAAACAA 59.546 39.130 4.17 4.17 41.56 2.83
372 379 4.080638 AGGGCATCCTTGTTGAAAAACAAA 60.081 37.500 5.62 0.00 41.56 2.83
373 380 4.637977 GGGCATCCTTGTTGAAAAACAAAA 59.362 37.500 5.62 0.00 41.55 2.44
374 381 5.220835 GGGCATCCTTGTTGAAAAACAAAAG 60.221 40.000 5.62 1.37 41.55 2.27
375 382 5.584251 GGCATCCTTGTTGAAAAACAAAAGA 59.416 36.000 5.62 6.01 41.55 2.52
447 454 1.339929 ACTTTGACCACCCGCAAATTC 59.660 47.619 0.00 0.00 33.94 2.17
581 591 2.093783 GGTGGTTCAAATTAGACGAGCG 59.906 50.000 0.00 0.00 0.00 5.03
602 612 4.798387 GCGGATCACCAAATGTTTATGAAC 59.202 41.667 0.00 0.00 35.59 3.18
621 635 3.402628 ACATATACAAGGGTCGATGCC 57.597 47.619 0.00 0.00 0.00 4.40
679 696 3.896888 AGCCTTTTGAAACACCATCATGA 59.103 39.130 0.00 0.00 0.00 3.07
705 722 1.811965 TGATCGGTTGTTGGCATGAAG 59.188 47.619 0.00 0.00 0.00 3.02
729 746 2.869801 CGCCAGCCGTTCAATAATTAGA 59.130 45.455 0.00 0.00 0.00 2.10
750 769 9.683069 ATTAGAATATAAGCAAAAGCATTTCCG 57.317 29.630 0.00 0.00 37.28 4.30
791 810 1.995484 AGTTGCTCGACAATCGACATG 59.005 47.619 0.00 0.00 44.82 3.21
934 962 3.059120 CGCAGCATCATATTTCCTCTGTG 60.059 47.826 0.00 0.00 0.00 3.66
938 966 5.821470 CAGCATCATATTTCCTCTGTGAACT 59.179 40.000 0.00 0.00 0.00 3.01
940 968 7.171167 CAGCATCATATTTCCTCTGTGAACTAG 59.829 40.741 0.00 0.00 0.00 2.57
941 969 6.989169 GCATCATATTTCCTCTGTGAACTAGT 59.011 38.462 0.00 0.00 0.00 2.57
1192 1246 7.267128 TCTCGGTAAGACTTTTTGTTACTTCA 58.733 34.615 0.00 0.00 0.00 3.02
1195 1249 8.339714 TCGGTAAGACTTTTTGTTACTTCATTG 58.660 33.333 0.00 0.00 0.00 2.82
1219 1273 5.220970 GGTGCTTACATACATGCCGTTAATT 60.221 40.000 0.00 0.00 0.00 1.40
1220 1274 6.017770 GGTGCTTACATACATGCCGTTAATTA 60.018 38.462 0.00 0.00 0.00 1.40
1221 1275 7.411274 GTGCTTACATACATGCCGTTAATTAA 58.589 34.615 0.00 0.00 0.00 1.40
1222 1276 7.911205 GTGCTTACATACATGCCGTTAATTAAA 59.089 33.333 0.00 0.00 0.00 1.52
1227 1281 7.199766 ACATACATGCCGTTAATTAAACATGG 58.800 34.615 25.55 16.29 38.03 3.66
1285 1340 0.470766 TGTTCAACTACGCCAAGGGT 59.529 50.000 0.00 0.00 0.00 4.34
1288 1343 0.606604 TCAACTACGCCAAGGGTCTC 59.393 55.000 0.00 0.00 0.00 3.36
1486 1547 4.382541 TCCGGCTCTGGCTCCTCA 62.383 66.667 0.00 0.00 38.73 3.86
1528 1589 3.259425 GACCACGCCGTACACGAGT 62.259 63.158 11.81 8.41 43.02 4.18
1721 1788 2.746277 CGGCGTGGGCTAGCTTTT 60.746 61.111 15.72 0.00 39.81 2.27
1775 1853 3.119291 CTGTTATGAACTAGCGAGGCTG 58.881 50.000 0.00 0.00 40.10 4.85
1862 1940 4.918810 ATTTGTTCTCTTGTTGTGGTCC 57.081 40.909 0.00 0.00 0.00 4.46
1889 1967 1.268539 CGAGGTTCCATTAATTGCCGC 60.269 52.381 0.00 0.00 0.00 6.53
1908 1986 2.565841 GCCTGCTAGTACCCAAATCTG 58.434 52.381 0.00 0.00 0.00 2.90
1953 2031 4.820284 AAAAGAAACAGTGCTGCTCTAC 57.180 40.909 3.65 0.00 0.00 2.59
1997 2471 2.180086 ACACCTATAGGGCATCTCCTCA 59.820 50.000 22.91 0.00 40.27 3.86
2021 2495 7.504574 TCACTCCTAAATCGGACATTGTATCTA 59.495 37.037 0.00 0.00 0.00 1.98
2037 2511 1.315690 TCTATCCGCGGACTGGTAAG 58.684 55.000 33.75 19.70 0.00 2.34
2062 2536 2.561478 GCCTAGATCCGGGCAATTTA 57.439 50.000 18.19 0.00 46.84 1.40
2150 2624 6.515531 GCCAAATCACAAAAGAATCTCAGTCA 60.516 38.462 0.00 0.00 0.00 3.41
2159 2633 4.005487 AGAATCTCAGTCAGGCATATGC 57.995 45.455 19.79 19.79 41.14 3.14
2229 2709 2.427245 CCTCCTTCTCGCCATCCGT 61.427 63.158 0.00 0.00 38.35 4.69
2231 2711 0.744874 CTCCTTCTCGCCATCCGTTA 59.255 55.000 0.00 0.00 38.35 3.18
2232 2712 1.136305 CTCCTTCTCGCCATCCGTTAA 59.864 52.381 0.00 0.00 38.35 2.01
2240 2720 1.287425 GCCATCCGTTAACTTCTCGG 58.713 55.000 3.71 0.00 44.76 4.63
2254 2734 4.761058 TCGGCCGCCTCCTTCTCT 62.761 66.667 23.51 0.00 0.00 3.10
2323 2803 3.914426 ATCCTAAGATGAACGGCTTGT 57.086 42.857 0.00 0.00 0.00 3.16
2325 2805 5.552870 ATCCTAAGATGAACGGCTTGTAT 57.447 39.130 0.00 0.00 0.00 2.29
2419 2902 3.367910 CCTCAACCTTCTTCTCTTCGAGG 60.368 52.174 0.00 0.00 0.00 4.63
2486 2983 4.694339 ACTTATCGTTCTTACATGCCTCC 58.306 43.478 0.00 0.00 0.00 4.30
2495 2992 1.262417 TACATGCCTCCTTGACGTCA 58.738 50.000 15.76 15.76 0.00 4.35
2614 3111 3.153369 TGGTTCCAAAATGCTAGCTGA 57.847 42.857 17.23 0.00 0.00 4.26
2679 3180 9.390795 CAAGCTATATGTCTTGCAAATACATTC 57.609 33.333 24.29 14.74 40.22 2.67
2688 3189 4.227512 TGCAAATACATTCGATGGCATC 57.772 40.909 17.58 17.58 33.60 3.91
2697 3198 4.036734 ACATTCGATGGCATCCAATAACAC 59.963 41.667 21.20 0.00 36.95 3.32
2746 3247 3.551082 GCTCTGAATGACAATCTCACTCG 59.449 47.826 0.00 0.00 26.70 4.18
2748 3249 3.763897 TCTGAATGACAATCTCACTCGGA 59.236 43.478 0.00 0.00 38.04 4.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.358898 ACACACATTTTGTCTCCTGTGC 59.641 45.455 1.69 0.00 42.07 4.57
51 52 1.404035 ACGTTTGAAGAAGGTGGCAAC 59.596 47.619 0.00 0.00 0.00 4.17
53 54 2.215196 GTACGTTTGAAGAAGGTGGCA 58.785 47.619 0.00 0.00 0.00 4.92
55 56 1.193874 GCGTACGTTTGAAGAAGGTGG 59.806 52.381 17.90 0.00 0.00 4.61
57 58 2.228138 TGCGTACGTTTGAAGAAGGT 57.772 45.000 17.90 0.00 0.00 3.50
59 60 4.386230 CAGATTGCGTACGTTTGAAGAAG 58.614 43.478 17.90 0.00 0.00 2.85
60 61 3.363575 GCAGATTGCGTACGTTTGAAGAA 60.364 43.478 17.90 0.00 31.71 2.52
61 62 2.156891 GCAGATTGCGTACGTTTGAAGA 59.843 45.455 17.90 0.00 31.71 2.87
65 68 0.515127 TGGCAGATTGCGTACGTTTG 59.485 50.000 17.90 9.27 46.21 2.93
245 252 9.419297 GGCTTCTTTTCACATGATATATACGTA 57.581 33.333 0.00 0.00 0.00 3.57
246 253 7.116376 CGGCTTCTTTTCACATGATATATACGT 59.884 37.037 0.00 0.00 0.00 3.57
247 254 7.448228 CGGCTTCTTTTCACATGATATATACG 58.552 38.462 0.00 0.00 0.00 3.06
276 283 4.514401 CGGCTATTCTGTCCTTTTTAGGT 58.486 43.478 0.00 0.00 0.00 3.08
277 284 3.877508 CCGGCTATTCTGTCCTTTTTAGG 59.122 47.826 0.00 0.00 0.00 2.69
289 296 0.464554 GCTTTGAGCCCGGCTATTCT 60.465 55.000 13.29 0.00 39.88 2.40
300 307 2.878406 TGACACCTTTGTAGCTTTGAGC 59.122 45.455 0.00 0.00 37.55 4.26
359 366 6.986817 TCACCTGTTTCTTTTGTTTTTCAACA 59.013 30.769 0.00 0.00 41.39 3.33
360 367 7.414814 TCACCTGTTTCTTTTGTTTTTCAAC 57.585 32.000 0.00 0.00 35.61 3.18
361 368 7.713073 ACTTCACCTGTTTCTTTTGTTTTTCAA 59.287 29.630 0.00 0.00 0.00 2.69
362 369 7.170658 CACTTCACCTGTTTCTTTTGTTTTTCA 59.829 33.333 0.00 0.00 0.00 2.69
363 370 7.509797 CACTTCACCTGTTTCTTTTGTTTTTC 58.490 34.615 0.00 0.00 0.00 2.29
366 373 4.929211 GCACTTCACCTGTTTCTTTTGTTT 59.071 37.500 0.00 0.00 0.00 2.83
367 374 4.021544 TGCACTTCACCTGTTTCTTTTGTT 60.022 37.500 0.00 0.00 0.00 2.83
368 375 3.509575 TGCACTTCACCTGTTTCTTTTGT 59.490 39.130 0.00 0.00 0.00 2.83
369 376 4.108699 TGCACTTCACCTGTTTCTTTTG 57.891 40.909 0.00 0.00 0.00 2.44
370 377 4.799564 TTGCACTTCACCTGTTTCTTTT 57.200 36.364 0.00 0.00 0.00 2.27
371 378 4.402155 TGATTGCACTTCACCTGTTTCTTT 59.598 37.500 0.00 0.00 0.00 2.52
372 379 3.953612 TGATTGCACTTCACCTGTTTCTT 59.046 39.130 0.00 0.00 0.00 2.52
373 380 3.554934 TGATTGCACTTCACCTGTTTCT 58.445 40.909 0.00 0.00 0.00 2.52
374 381 3.304928 CCTGATTGCACTTCACCTGTTTC 60.305 47.826 0.00 0.00 0.00 2.78
375 382 2.624838 CCTGATTGCACTTCACCTGTTT 59.375 45.455 0.00 0.00 0.00 2.83
540 549 6.183360 ACCACCTAGCTCGATCTTTTTACTAG 60.183 42.308 0.00 0.00 0.00 2.57
602 612 2.029380 TCGGCATCGACCCTTGTATATG 60.029 50.000 0.00 0.00 40.88 1.78
621 635 6.908870 TGATGAAAGGACTACATCAAATCG 57.091 37.500 14.89 0.00 44.42 3.34
656 673 4.344679 TCATGATGGTGTTTCAAAAGGCTT 59.655 37.500 0.00 0.00 0.00 4.35
657 674 3.896888 TCATGATGGTGTTTCAAAAGGCT 59.103 39.130 0.00 0.00 0.00 4.58
666 683 6.405065 CCGATCAGATTTTCATGATGGTGTTT 60.405 38.462 0.00 0.00 36.30 2.83
679 696 2.890311 TGCCAACAACCGATCAGATTTT 59.110 40.909 0.00 0.00 0.00 1.82
705 722 1.366111 TTATTGAACGGCTGGCGCTC 61.366 55.000 24.07 21.06 36.09 5.03
750 769 6.759497 ACTTTACCTATGAGGAAATGCAAC 57.241 37.500 0.00 0.00 37.67 4.17
962 1015 3.329929 ACCAAGATGAACCGTAAGTCC 57.670 47.619 0.00 0.00 0.00 3.85
1182 1235 6.892658 ATGTAAGCACCAATGAAGTAACAA 57.107 33.333 0.00 0.00 0.00 2.83
1183 1236 6.937465 TGTATGTAAGCACCAATGAAGTAACA 59.063 34.615 0.00 0.00 0.00 2.41
1192 1246 2.618241 CGGCATGTATGTAAGCACCAAT 59.382 45.455 0.00 0.00 0.00 3.16
1195 1249 1.663695 ACGGCATGTATGTAAGCACC 58.336 50.000 0.00 0.00 0.00 5.01
1219 1273 3.603965 AACCAACCAGTCCCATGTTTA 57.396 42.857 0.00 0.00 0.00 2.01
1220 1274 2.470057 AACCAACCAGTCCCATGTTT 57.530 45.000 0.00 0.00 0.00 2.83
1221 1275 3.227614 GTTAACCAACCAGTCCCATGTT 58.772 45.455 0.00 0.00 0.00 2.71
1222 1276 2.812613 CGTTAACCAACCAGTCCCATGT 60.813 50.000 0.00 0.00 0.00 3.21
1227 1281 2.243602 TGTCGTTAACCAACCAGTCC 57.756 50.000 0.00 0.00 0.00 3.85
1392 1447 3.309954 GCAGATAAAGTAGTGCTTTCCGG 59.690 47.826 9.67 0.00 43.42 5.14
1441 1496 1.203523 ACAGTCACCTCGAGCTTCATC 59.796 52.381 6.99 0.00 0.00 2.92
1486 1547 4.404098 GGCATCGGGGTTGACGGT 62.404 66.667 0.00 0.00 0.00 4.83
1721 1788 2.664851 CGCGGCACAAACCAGAGA 60.665 61.111 0.00 0.00 0.00 3.10
1784 1862 1.865865 ATATAACAGCACGGCCTTCG 58.134 50.000 0.00 0.00 45.88 3.79
1797 1875 8.639761 ACACTCACAAGGTGACCTATATATAAC 58.360 37.037 3.68 0.00 37.67 1.89
1850 1928 1.873903 CGTCTCCAGGACCACAACAAG 60.874 57.143 0.00 0.00 41.64 3.16
1862 1940 3.887621 TTAATGGAACCTCGTCTCCAG 57.112 47.619 0.00 0.00 44.82 3.86
1889 1967 3.197766 TGTCAGATTTGGGTACTAGCAGG 59.802 47.826 0.00 0.00 0.00 4.85
1908 1986 7.744087 TTCATGGGCATATTGTAGTTATGTC 57.256 36.000 0.00 0.00 32.18 3.06
1997 2471 6.732896 AGATACAATGTCCGATTTAGGAGT 57.267 37.500 0.00 0.00 41.68 3.85
2021 2495 2.499685 GCTTACCAGTCCGCGGAT 59.500 61.111 33.58 18.35 0.00 4.18
2037 2511 4.344474 CCGGATCTAGGCGGACGC 62.344 72.222 8.39 8.39 41.06 5.19
2099 2573 5.170748 GCAAAAACTATGCATACTTGGCTT 58.829 37.500 1.16 0.00 43.29 4.35
2128 2602 6.294397 GCCTGACTGAGATTCTTTTGTGATTT 60.294 38.462 0.00 0.00 0.00 2.17
2191 2671 4.687215 GTGGCGGCAGAGTGAGCA 62.687 66.667 13.91 0.00 0.00 4.26
2217 2697 1.822990 AGAAGTTAACGGATGGCGAGA 59.177 47.619 0.00 0.00 0.00 4.04
2229 2709 1.217244 GAGGCGGCCGAGAAGTTAA 59.783 57.895 33.48 0.00 0.00 2.01
2231 2711 4.083862 GGAGGCGGCCGAGAAGTT 62.084 66.667 33.48 6.23 0.00 2.66
2240 2720 4.847444 GGCAGAGAAGGAGGCGGC 62.847 72.222 0.00 0.00 0.00 6.53
2271 2751 2.171003 TGAAGGATCAGCTGAAGACGA 58.829 47.619 22.50 0.00 0.00 4.20
2323 2803 5.338953 GGATGAGGATGCAAGGATGATCATA 60.339 44.000 8.54 0.00 0.00 2.15
2325 2805 3.244805 GGATGAGGATGCAAGGATGATCA 60.245 47.826 0.00 0.00 0.00 2.92
2397 2880 3.944055 TCGAAGAGAAGAAGGTTGAGG 57.056 47.619 0.00 0.00 0.00 3.86
2419 2902 5.008712 ACCGATTGAAGAGAAAAAGACCAAC 59.991 40.000 0.00 0.00 0.00 3.77
2486 2983 0.664466 TCAAGCGCTCTGACGTCAAG 60.664 55.000 20.49 18.89 34.88 3.02
2495 2992 2.037136 GGCATGTGTCAAGCGCTCT 61.037 57.895 12.06 0.00 0.00 4.09
2572 3069 7.268586 ACCATCAAAGTACATGATCTAGTGAC 58.731 38.462 10.29 0.00 35.38 3.67
2674 3175 4.036734 GTGTTATTGGATGCCATCGAATGT 59.963 41.667 20.97 3.52 38.06 2.71
2677 3178 3.627123 CAGTGTTATTGGATGCCATCGAA 59.373 43.478 4.55 4.55 31.53 3.71
2679 3180 2.945008 ACAGTGTTATTGGATGCCATCG 59.055 45.455 0.00 0.00 31.53 3.84
2688 3189 5.220739 GCTTCATGCTCTACAGTGTTATTGG 60.221 44.000 0.00 0.00 38.95 3.16
2697 3198 3.257469 TCAAGGCTTCATGCTCTACAG 57.743 47.619 0.00 0.00 42.39 2.74
2727 3228 4.115401 TCCGAGTGAGATTGTCATTCAG 57.885 45.455 7.03 0.00 41.04 3.02
2728 3229 4.535526 TTCCGAGTGAGATTGTCATTCA 57.464 40.909 7.03 0.00 41.04 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.