Multiple sequence alignment - TraesCS6A01G315300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G315300 chr6A 100.000 4510 0 0 1 4510 551868299 551863790 0.000000e+00 8329.0
1 TraesCS6A01G315300 chr6D 94.270 3979 125 42 580 4510 405485879 405481956 0.000000e+00 5989.0
2 TraesCS6A01G315300 chr6D 93.407 273 15 2 1 271 94749086 94748815 7.030000e-108 401.0
3 TraesCS6A01G315300 chr6B 93.714 3818 132 45 707 4510 609383180 609379457 0.000000e+00 5622.0
4 TraesCS6A01G315300 chr6B 88.202 178 20 1 541 718 609385384 609385208 1.270000e-50 211.0
5 TraesCS6A01G315300 chr7D 77.464 1380 274 28 2148 3511 130114674 130113316 0.000000e+00 791.0
6 TraesCS6A01G315300 chr7D 88.793 464 50 2 1222 1684 130116074 130115612 6.550000e-158 568.0
7 TraesCS6A01G315300 chr7D 86.316 285 34 3 270 550 625281204 625281487 5.670000e-79 305.0
8 TraesCS6A01G315300 chr7D 91.525 59 2 2 4247 4305 43598112 43598167 1.350000e-10 78.7
9 TraesCS6A01G315300 chr7D 91.379 58 2 2 4248 4305 45612957 45613011 4.840000e-10 76.8
10 TraesCS6A01G315300 chr7D 91.379 58 2 2 4248 4305 592294361 592294307 4.840000e-10 76.8
11 TraesCS6A01G315300 chr7B 77.358 1378 276 26 2148 3509 91662277 91660920 0.000000e+00 784.0
12 TraesCS6A01G315300 chr7B 88.745 462 50 2 1223 1683 91663644 91663184 8.470000e-157 564.0
13 TraesCS6A01G315300 chr7A 76.973 1381 282 25 2148 3511 129260938 129259577 0.000000e+00 756.0
14 TraesCS6A01G315300 chr7A 89.224 464 48 2 1222 1684 129262525 129262063 3.020000e-161 579.0
15 TraesCS6A01G315300 chr2A 93.727 271 16 1 1 271 164701457 164701188 5.430000e-109 405.0
16 TraesCS6A01G315300 chr2A 89.324 281 28 1 270 548 164701149 164700869 7.180000e-93 351.0
17 TraesCS6A01G315300 chr5A 93.407 273 15 2 1 271 448289695 448289424 7.030000e-108 401.0
18 TraesCS6A01G315300 chr5A 87.500 280 33 2 272 549 601261588 601261867 5.630000e-84 322.0
19 TraesCS6A01G315300 chr1D 93.407 273 15 2 1 271 278526304 278526575 7.030000e-108 401.0
20 TraesCS6A01G315300 chr1D 88.448 277 32 0 270 546 278526604 278526880 7.230000e-88 335.0
21 TraesCS6A01G315300 chr1D 87.500 280 33 1 270 547 485411410 485411689 5.630000e-84 322.0
22 TraesCS6A01G315300 chr1D 86.833 281 35 2 270 548 291778973 291778693 3.390000e-81 313.0
23 TraesCS6A01G315300 chr3D 93.309 269 17 1 1 269 48815935 48816202 3.270000e-106 396.0
24 TraesCS6A01G315300 chr3D 91.379 58 2 2 4248 4305 564268352 564268298 4.840000e-10 76.8
25 TraesCS6A01G315300 chr4D 92.989 271 18 1 1 271 115401466 115401197 1.180000e-105 394.0
26 TraesCS6A01G315300 chr5D 92.674 273 17 2 1 271 366735510 366735239 1.520000e-104 390.0
27 TraesCS6A01G315300 chr5D 92.647 272 17 2 1 270 44160360 44160630 5.470000e-104 388.0
28 TraesCS6A01G315300 chr5D 86.972 284 33 1 269 548 532238912 532238629 2.620000e-82 316.0
29 TraesCS6A01G315300 chr2D 92.674 273 17 2 1 271 617729682 617729411 1.520000e-104 390.0
30 TraesCS6A01G315300 chr2D 89.046 283 27 2 270 548 617729373 617729091 9.290000e-92 348.0
31 TraesCS6A01G315300 chr4B 87.189 281 32 1 270 546 427323785 427323505 2.620000e-82 316.0
32 TraesCS6A01G315300 chr4B 91.379 58 2 2 4248 4305 290028148 290028094 4.840000e-10 76.8
33 TraesCS6A01G315300 chr3A 80.198 303 47 7 270 563 692984228 692983930 9.830000e-52 215.0
34 TraesCS6A01G315300 chr4A 91.379 58 2 2 4248 4305 555447609 555447663 4.840000e-10 76.8
35 TraesCS6A01G315300 chr1A 91.379 58 2 2 4248 4305 47365550 47365604 4.840000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G315300 chr6A 551863790 551868299 4509 True 8329.0 8329 100.0000 1 4510 1 chr6A.!!$R1 4509
1 TraesCS6A01G315300 chr6D 405481956 405485879 3923 True 5989.0 5989 94.2700 580 4510 1 chr6D.!!$R2 3930
2 TraesCS6A01G315300 chr6B 609379457 609385384 5927 True 2916.5 5622 90.9580 541 4510 2 chr6B.!!$R1 3969
3 TraesCS6A01G315300 chr7D 130113316 130116074 2758 True 679.5 791 83.1285 1222 3511 2 chr7D.!!$R2 2289
4 TraesCS6A01G315300 chr7B 91660920 91663644 2724 True 674.0 784 83.0515 1223 3509 2 chr7B.!!$R1 2286
5 TraesCS6A01G315300 chr7A 129259577 129262525 2948 True 667.5 756 83.0985 1222 3511 2 chr7A.!!$R1 2289
6 TraesCS6A01G315300 chr2A 164700869 164701457 588 True 378.0 405 91.5255 1 548 2 chr2A.!!$R1 547
7 TraesCS6A01G315300 chr1D 278526304 278526880 576 False 368.0 401 90.9275 1 546 2 chr1D.!!$F2 545
8 TraesCS6A01G315300 chr2D 617729091 617729682 591 True 369.0 390 90.8600 1 548 2 chr2D.!!$R1 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
365 408 0.040067 GAGAAAACAGGGCAAGCACG 60.040 55.0 0.0 0.0 0.00 5.34 F
485 528 0.109132 GCATTGGGCCGACTTTTCTG 60.109 55.0 0.0 0.0 36.11 3.02 F
498 541 0.239879 TTTTCTGTCCGCGCCAATTC 59.760 50.0 0.0 0.0 0.00 2.17 F
1913 4364 0.317020 CTAGCTTTTATTGCCGCGCC 60.317 55.0 0.0 0.0 0.00 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1892 4343 1.856014 GCGCGGCAATAAAAGCTAGTG 60.856 52.381 8.83 0.0 0.00 2.74 R
2351 5187 3.774066 CAACTGCTCTATCGACACATGA 58.226 45.455 0.00 0.0 0.00 3.07 R
2636 5472 3.921119 AAAGTGCGAAGATTGATGCAA 57.079 38.095 0.00 0.0 39.34 4.08 R
3684 6571 0.247460 TCGACACAATCAGCCCAGAG 59.753 55.000 0.00 0.0 0.00 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
155 156 2.843545 GTGGGGCTTGGGACTTCA 59.156 61.111 0.00 0.00 0.00 3.02
207 208 1.955080 GACGTCGGAGGAGGACATTAT 59.045 52.381 0.00 0.00 34.04 1.28
229 230 1.139095 GTCGGAGTCGGAAAGCGAT 59.861 57.895 1.41 0.00 36.95 4.58
308 351 2.147958 GCGAGGGTGTGTTGTTTGATA 58.852 47.619 0.00 0.00 0.00 2.15
316 359 5.245531 GGTGTGTTGTTTGATATGGAGAGA 58.754 41.667 0.00 0.00 0.00 3.10
353 396 3.053896 CGGCCCCGGTGAGAAAAC 61.054 66.667 0.00 0.00 35.56 2.43
354 397 2.114411 GGCCCCGGTGAGAAAACA 59.886 61.111 0.00 0.00 0.00 2.83
355 398 1.971695 GGCCCCGGTGAGAAAACAG 60.972 63.158 0.00 0.00 0.00 3.16
356 399 1.971695 GCCCCGGTGAGAAAACAGG 60.972 63.158 0.00 0.00 35.41 4.00
358 401 1.971695 CCCGGTGAGAAAACAGGGC 60.972 63.158 0.00 0.00 46.56 5.19
359 402 1.228124 CCGGTGAGAAAACAGGGCA 60.228 57.895 0.00 0.00 32.36 5.36
360 403 0.821711 CCGGTGAGAAAACAGGGCAA 60.822 55.000 0.00 0.00 32.36 4.52
361 404 0.593128 CGGTGAGAAAACAGGGCAAG 59.407 55.000 0.00 0.00 0.00 4.01
362 405 0.315251 GGTGAGAAAACAGGGCAAGC 59.685 55.000 0.00 0.00 0.00 4.01
363 406 1.032014 GTGAGAAAACAGGGCAAGCA 58.968 50.000 0.00 0.00 0.00 3.91
364 407 1.032014 TGAGAAAACAGGGCAAGCAC 58.968 50.000 0.00 0.00 0.00 4.40
365 408 0.040067 GAGAAAACAGGGCAAGCACG 60.040 55.000 0.00 0.00 0.00 5.34
366 409 1.661509 GAAAACAGGGCAAGCACGC 60.662 57.895 0.00 0.00 0.00 5.34
367 410 3.483235 AAAACAGGGCAAGCACGCG 62.483 57.895 3.53 3.53 0.00 6.01
381 424 2.247267 CGCGTCCGTTTTGTGTCC 59.753 61.111 0.00 0.00 0.00 4.02
382 425 2.526993 CGCGTCCGTTTTGTGTCCA 61.527 57.895 0.00 0.00 0.00 4.02
383 426 1.010462 GCGTCCGTTTTGTGTCCAC 60.010 57.895 0.00 0.00 0.00 4.02
384 427 1.274476 CGTCCGTTTTGTGTCCACG 59.726 57.895 0.00 0.00 0.00 4.94
385 428 1.010462 GTCCGTTTTGTGTCCACGC 60.010 57.895 0.00 0.00 32.43 5.34
386 429 2.181521 TCCGTTTTGTGTCCACGCC 61.182 57.895 0.00 0.00 32.43 5.68
387 430 2.052590 CGTTTTGTGTCCACGCCG 60.053 61.111 0.00 0.00 0.00 6.46
388 431 2.526993 CGTTTTGTGTCCACGCCGA 61.527 57.895 0.00 0.00 0.00 5.54
389 432 1.010462 GTTTTGTGTCCACGCCGAC 60.010 57.895 0.00 0.00 0.00 4.79
394 437 4.893601 TGTCCACGCCGACGCAAA 62.894 61.111 0.00 0.00 45.53 3.68
395 438 3.419759 GTCCACGCCGACGCAAAT 61.420 61.111 0.00 0.00 45.53 2.32
396 439 3.115892 TCCACGCCGACGCAAATC 61.116 61.111 0.00 0.00 45.53 2.17
397 440 4.160635 CCACGCCGACGCAAATCC 62.161 66.667 0.00 0.00 45.53 3.01
398 441 4.499023 CACGCCGACGCAAATCCG 62.499 66.667 0.00 0.00 45.53 4.18
402 445 2.202824 CCGACGCAAATCCGGCTA 60.203 61.111 0.00 0.00 36.62 3.93
403 446 1.812093 CCGACGCAAATCCGGCTAA 60.812 57.895 0.00 0.00 36.62 3.09
404 447 1.363145 CCGACGCAAATCCGGCTAAA 61.363 55.000 0.00 0.00 36.62 1.85
405 448 0.444651 CGACGCAAATCCGGCTAAAA 59.555 50.000 0.00 0.00 33.03 1.52
406 449 1.135916 CGACGCAAATCCGGCTAAAAA 60.136 47.619 0.00 0.00 33.03 1.94
422 465 0.617935 AAAAATGGGCCGGAAATGGG 59.382 50.000 5.05 0.00 0.00 4.00
423 466 0.546507 AAAATGGGCCGGAAATGGGT 60.547 50.000 5.05 0.00 0.00 4.51
424 467 0.975556 AAATGGGCCGGAAATGGGTC 60.976 55.000 5.05 0.00 0.00 4.46
425 468 3.714487 ATGGGCCGGAAATGGGTCG 62.714 63.158 5.05 0.00 0.00 4.79
429 472 2.824041 CCGGAAATGGGTCGGCAG 60.824 66.667 0.00 0.00 37.25 4.85
430 473 2.824041 CGGAAATGGGTCGGCAGG 60.824 66.667 0.00 0.00 0.00 4.85
431 474 3.140814 GGAAATGGGTCGGCAGGC 61.141 66.667 0.00 0.00 0.00 4.85
432 475 3.508840 GAAATGGGTCGGCAGGCG 61.509 66.667 10.80 10.80 0.00 5.52
438 481 4.467084 GGTCGGCAGGCGGATGAA 62.467 66.667 17.49 0.00 0.00 2.57
439 482 2.435938 GTCGGCAGGCGGATGAAA 60.436 61.111 17.49 0.00 0.00 2.69
440 483 2.125147 TCGGCAGGCGGATGAAAG 60.125 61.111 17.49 0.00 0.00 2.62
441 484 3.880846 CGGCAGGCGGATGAAAGC 61.881 66.667 8.89 0.00 0.00 3.51
442 485 3.880846 GGCAGGCGGATGAAAGCG 61.881 66.667 0.00 0.00 0.00 4.68
443 486 3.127533 GCAGGCGGATGAAAGCGT 61.128 61.111 0.00 0.00 0.00 5.07
444 487 1.813753 GCAGGCGGATGAAAGCGTA 60.814 57.895 0.00 0.00 0.00 4.42
445 488 2.006772 CAGGCGGATGAAAGCGTAC 58.993 57.895 0.00 0.00 0.00 3.67
446 489 0.739462 CAGGCGGATGAAAGCGTACA 60.739 55.000 0.00 0.00 0.00 2.90
447 490 0.739813 AGGCGGATGAAAGCGTACAC 60.740 55.000 0.00 0.00 0.00 2.90
448 491 1.343821 GCGGATGAAAGCGTACACG 59.656 57.895 0.00 0.00 43.27 4.49
467 510 3.408851 GTCCGTTTGGGTCGACGC 61.409 66.667 24.41 24.41 37.91 5.19
468 511 3.914117 TCCGTTTGGGTCGACGCA 61.914 61.111 29.11 29.11 37.91 5.24
469 512 2.740826 CCGTTTGGGTCGACGCAT 60.741 61.111 32.33 0.00 38.62 4.73
470 513 2.322081 CCGTTTGGGTCGACGCATT 61.322 57.895 32.33 0.00 38.62 3.56
471 514 1.154488 CGTTTGGGTCGACGCATTG 60.154 57.895 32.33 21.40 38.62 2.82
472 515 1.209127 GTTTGGGTCGACGCATTGG 59.791 57.895 32.33 0.00 38.62 3.16
473 516 1.969064 TTTGGGTCGACGCATTGGG 60.969 57.895 32.33 0.00 38.62 4.12
480 523 2.746277 GACGCATTGGGCCGACTT 60.746 61.111 0.00 0.00 40.31 3.01
481 524 2.282180 ACGCATTGGGCCGACTTT 60.282 55.556 0.00 0.00 40.31 2.66
482 525 1.862602 GACGCATTGGGCCGACTTTT 61.863 55.000 0.00 0.00 40.31 2.27
483 526 1.154035 CGCATTGGGCCGACTTTTC 60.154 57.895 0.00 0.00 40.31 2.29
484 527 1.586154 CGCATTGGGCCGACTTTTCT 61.586 55.000 0.00 0.00 40.31 2.52
485 528 0.109132 GCATTGGGCCGACTTTTCTG 60.109 55.000 0.00 0.00 36.11 3.02
486 529 1.247567 CATTGGGCCGACTTTTCTGT 58.752 50.000 0.00 0.00 0.00 3.41
487 530 1.200020 CATTGGGCCGACTTTTCTGTC 59.800 52.381 0.00 0.00 0.00 3.51
488 531 0.536460 TTGGGCCGACTTTTCTGTCC 60.536 55.000 0.00 0.00 31.49 4.02
489 532 2.033194 GGGCCGACTTTTCTGTCCG 61.033 63.158 0.00 0.00 33.70 4.79
490 533 2.677979 GGCCGACTTTTCTGTCCGC 61.678 63.158 0.00 0.00 39.33 5.54
491 534 3.011760 GCCGACTTTTCTGTCCGCG 62.012 63.158 0.00 0.00 33.27 6.46
492 535 2.470286 CGACTTTTCTGTCCGCGC 59.530 61.111 0.00 0.00 33.70 6.86
493 536 2.861006 GACTTTTCTGTCCGCGCC 59.139 61.111 0.00 0.00 0.00 6.53
494 537 1.959226 GACTTTTCTGTCCGCGCCA 60.959 57.895 0.00 0.00 0.00 5.69
495 538 1.503818 GACTTTTCTGTCCGCGCCAA 61.504 55.000 0.00 0.00 0.00 4.52
496 539 0.889186 ACTTTTCTGTCCGCGCCAAT 60.889 50.000 0.00 0.00 0.00 3.16
497 540 0.240945 CTTTTCTGTCCGCGCCAATT 59.759 50.000 0.00 0.00 0.00 2.32
498 541 0.239879 TTTTCTGTCCGCGCCAATTC 59.760 50.000 0.00 0.00 0.00 2.17
499 542 0.886938 TTTCTGTCCGCGCCAATTCA 60.887 50.000 0.00 0.00 0.00 2.57
500 543 0.886938 TTCTGTCCGCGCCAATTCAA 60.887 50.000 0.00 0.00 0.00 2.69
501 544 0.886938 TCTGTCCGCGCCAATTCAAA 60.887 50.000 0.00 0.00 0.00 2.69
502 545 0.729140 CTGTCCGCGCCAATTCAAAC 60.729 55.000 0.00 0.00 0.00 2.93
503 546 1.795962 GTCCGCGCCAATTCAAACG 60.796 57.895 0.00 0.00 0.00 3.60
504 547 2.503809 CCGCGCCAATTCAAACGG 60.504 61.111 0.00 0.00 0.00 4.44
505 548 2.558821 CGCGCCAATTCAAACGGA 59.441 55.556 0.00 0.00 0.00 4.69
506 549 1.795962 CGCGCCAATTCAAACGGAC 60.796 57.895 0.00 0.00 0.00 4.79
507 550 1.795962 GCGCCAATTCAAACGGACG 60.796 57.895 0.00 0.00 0.00 4.79
508 551 1.863491 CGCCAATTCAAACGGACGA 59.137 52.632 0.00 0.00 0.00 4.20
509 552 0.452122 CGCCAATTCAAACGGACGAC 60.452 55.000 0.00 0.00 0.00 4.34
513 556 0.863144 AATTCAAACGGACGACGGTG 59.137 50.000 0.00 6.57 45.59 4.94
514 557 0.947180 ATTCAAACGGACGACGGTGG 60.947 55.000 0.00 0.22 45.59 4.61
515 558 2.014064 TTCAAACGGACGACGGTGGA 62.014 55.000 0.00 2.61 45.59 4.02
516 559 2.028043 AAACGGACGACGGTGGAC 59.972 61.111 0.00 0.00 45.59 4.02
517 560 3.829272 AAACGGACGACGGTGGACG 62.829 63.158 0.00 4.02 45.59 4.79
529 572 1.379527 GGTGGACGAAATGGATCACC 58.620 55.000 0.00 0.00 37.98 4.02
530 573 1.065418 GGTGGACGAAATGGATCACCT 60.065 52.381 0.00 0.00 40.84 4.00
531 574 2.280628 GTGGACGAAATGGATCACCTC 58.719 52.381 0.00 0.00 37.04 3.85
532 575 1.905894 TGGACGAAATGGATCACCTCA 59.094 47.619 0.00 0.00 37.04 3.86
533 576 2.505407 TGGACGAAATGGATCACCTCAT 59.495 45.455 0.00 0.00 37.04 2.90
534 577 3.054434 TGGACGAAATGGATCACCTCATT 60.054 43.478 0.00 0.00 35.37 2.57
535 578 3.313526 GGACGAAATGGATCACCTCATTG 59.686 47.826 0.00 0.00 34.28 2.82
536 579 4.191544 GACGAAATGGATCACCTCATTGA 58.808 43.478 0.00 0.00 34.28 2.57
537 580 4.588899 ACGAAATGGATCACCTCATTGAA 58.411 39.130 0.00 0.00 34.28 2.69
538 581 4.637534 ACGAAATGGATCACCTCATTGAAG 59.362 41.667 0.00 0.00 34.28 3.02
539 582 4.637534 CGAAATGGATCACCTCATTGAAGT 59.362 41.667 0.00 0.00 34.28 3.01
544 587 3.376546 GGATCACCTCATTGAAGTTGCTC 59.623 47.826 0.00 0.00 0.00 4.26
597 640 3.444388 TGGTTAACACCTGTTCCAACAAC 59.556 43.478 8.10 0.00 44.61 3.32
645 697 7.996644 TGGAAAAGACTAAACTTGTGGAACTAT 59.003 33.333 0.00 0.00 38.04 2.12
650 702 9.490379 AAGACTAAACTTGTGGAACTATACTTG 57.510 33.333 0.00 0.00 38.04 3.16
657 709 9.787435 AACTTGTGGAACTATACTTGTATTTCA 57.213 29.630 0.00 0.00 38.04 2.69
687 739 7.288389 ACAAACACCCTGATGCATCATATAATT 59.712 33.333 28.81 17.36 36.02 1.40
696 748 2.415893 GCATCATATAATTGGCCGCACC 60.416 50.000 0.00 0.00 39.84 5.01
712 2787 4.864334 CCCGGAGCAGGCCATGTC 62.864 72.222 5.01 0.00 0.00 3.06
820 2910 1.009222 CGGTGTAGTACGCCCGATC 60.009 63.158 24.01 2.61 45.71 3.69
839 2929 2.111878 CATCACCGCTCCCCATCC 59.888 66.667 0.00 0.00 0.00 3.51
840 2930 2.366837 ATCACCGCTCCCCATCCA 60.367 61.111 0.00 0.00 0.00 3.41
841 2931 1.771746 ATCACCGCTCCCCATCCAT 60.772 57.895 0.00 0.00 0.00 3.41
884 2974 0.882927 CAAACTTTCACCGGCGAGGA 60.883 55.000 9.30 1.61 45.00 3.71
886 2976 2.125512 CTTTCACCGGCGAGGAGG 60.126 66.667 9.30 0.00 45.00 4.30
929 3021 1.250840 AAAGGACGGGCATTGCTTCC 61.251 55.000 8.82 11.66 0.00 3.46
1114 3210 4.719106 ACGACTCCTCCGGCTCGT 62.719 66.667 0.00 0.55 33.25 4.18
1722 4087 2.091588 CGTCTTTGGGTATCAACGAACG 59.908 50.000 0.00 0.00 35.77 3.95
1910 4361 4.197107 CTACACTAGCTTTTATTGCCGC 57.803 45.455 0.00 0.00 0.00 6.53
1913 4364 0.317020 CTAGCTTTTATTGCCGCGCC 60.317 55.000 0.00 0.00 0.00 6.53
1937 4388 3.429135 GGTTCTCATCCCTACACGTTCTC 60.429 52.174 0.00 0.00 0.00 2.87
2020 4791 4.171005 CACTCGAATCTTTGCCGTTAGTA 58.829 43.478 0.00 0.00 0.00 1.82
2048 4819 6.967199 ACTCAACTTTTGATCGTTTTCTTGTC 59.033 34.615 0.00 0.00 39.30 3.18
2235 5071 3.520696 TGGATCTCCAAGTTTCCAGAGA 58.479 45.455 0.00 0.00 44.35 3.10
2351 5187 1.153842 TCGTCTGCGCGTCAATGAT 60.154 52.632 8.43 0.00 38.14 2.45
2606 5442 2.843401 TTAGCTTTGCGGGTCTAACA 57.157 45.000 0.00 0.00 0.00 2.41
2636 5472 5.036117 AGTTCATACCAGTTATTCGCCAT 57.964 39.130 0.00 0.00 0.00 4.40
2640 5476 1.832883 ACCAGTTATTCGCCATTGCA 58.167 45.000 0.00 0.00 37.32 4.08
2915 5793 1.376553 AGAAGGCTGCCGAAAGCTC 60.377 57.895 13.96 4.62 43.06 4.09
3191 6069 1.133976 ACTCTGTCTGTTGCCTTTGCT 60.134 47.619 0.00 0.00 38.71 3.91
3251 6129 1.082690 GCACTAGGTTGCAGAAGCTC 58.917 55.000 0.64 0.00 42.49 4.09
3592 6479 6.714810 TGCTGTTGTATTCCTGTTCAAGTATT 59.285 34.615 0.00 0.00 0.00 1.89
3698 6585 5.441718 TTATTCTTCTCTGGGCTGATTGT 57.558 39.130 0.00 0.00 0.00 2.71
3740 6627 6.963049 ACGAGGTTTCTTTGATGTATGTAC 57.037 37.500 0.00 0.00 0.00 2.90
3835 6722 2.151202 ACTGATGCCTTTGTTGTACCG 58.849 47.619 0.00 0.00 0.00 4.02
3882 6769 0.815734 ATTGCACAGAGATTGGCTGC 59.184 50.000 0.00 0.00 36.86 5.25
3887 6774 0.403271 ACAGAGATTGGCTGCAGGTT 59.597 50.000 17.12 0.00 36.86 3.50
3905 6792 0.250684 TTGACTCCAATTCGGCAGCA 60.251 50.000 0.00 0.00 33.14 4.41
3906 6793 0.674581 TGACTCCAATTCGGCAGCAG 60.675 55.000 0.00 0.00 33.14 4.24
3961 6848 2.070783 CAGCCATTGATGTTTTGCCAC 58.929 47.619 0.00 0.00 0.00 5.01
3972 6859 2.353269 TGTTTTGCCACGTACTGTTCAG 59.647 45.455 0.00 0.00 0.00 3.02
4012 6899 3.815401 AGGAACGGCATTATCTATGTTGC 59.185 43.478 0.00 0.00 36.57 4.17
4257 7154 3.449377 TGTTCATTTGCCATGATCATGCT 59.551 39.130 27.24 8.30 37.49 3.79
4258 7155 4.645588 TGTTCATTTGCCATGATCATGCTA 59.354 37.500 27.24 17.07 37.49 3.49
4259 7156 5.220381 GTTCATTTGCCATGATCATGCTAG 58.780 41.667 27.24 16.26 37.49 3.42
4388 7286 1.566703 TGGTCCTTGGTCCTTGTTTCA 59.433 47.619 4.71 0.00 0.00 2.69
4425 7323 3.118482 ACATCCACTGTCAGATGGTGATC 60.118 47.826 17.19 0.00 43.42 2.92
4436 7334 2.019984 GATGGTGATCTGCCTTTCCAC 58.980 52.381 8.07 0.00 0.00 4.02
4446 7344 0.034960 GCCTTTCCACCCTTCTCCTC 60.035 60.000 0.00 0.00 0.00 3.71
4451 7349 2.534042 TCCACCCTTCTCCTCTGTAG 57.466 55.000 0.00 0.00 0.00 2.74
4475 7373 1.160137 CTGGAGGGTTCAAAAGCTCG 58.840 55.000 0.00 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 2.981977 TTCCGCGAACGCTTGTCCTT 62.982 55.000 8.23 0.00 39.32 3.36
140 141 0.112412 TCTTTGAAGTCCCAAGCCCC 59.888 55.000 0.00 0.00 0.00 5.80
144 145 1.801178 GCTCGTCTTTGAAGTCCCAAG 59.199 52.381 0.00 0.00 0.00 3.61
207 208 1.919956 GCTTTCCGACTCCGACTCGA 61.920 60.000 0.00 0.00 38.22 4.04
254 257 2.159037 TCGCCGATAGTTCTAGCATACG 59.841 50.000 0.00 0.00 0.00 3.06
299 342 6.375174 CACATTGGTCTCTCCATATCAAACAA 59.625 38.462 0.00 0.00 46.60 2.83
308 351 0.994247 TGGCACATTGGTCTCTCCAT 59.006 50.000 0.00 0.00 46.60 3.41
316 359 2.282180 GGTCGGTGGCACATTGGT 60.282 61.111 20.82 0.00 44.52 3.67
349 392 2.417097 GCGTGCTTGCCCTGTTTT 59.583 55.556 0.00 0.00 0.00 2.43
357 400 3.800323 AAAACGGACGCGTGCTTGC 62.800 57.895 28.07 7.83 0.00 4.01
358 401 2.003443 CAAAACGGACGCGTGCTTG 61.003 57.895 28.07 20.87 0.00 4.01
359 402 2.326550 CAAAACGGACGCGTGCTT 59.673 55.556 28.07 17.23 0.00 3.91
360 403 2.893404 ACAAAACGGACGCGTGCT 60.893 55.556 28.07 12.70 0.00 4.40
361 404 2.720750 CACAAAACGGACGCGTGC 60.721 61.111 20.70 21.34 0.00 5.34
362 405 1.367195 GACACAAAACGGACGCGTG 60.367 57.895 20.70 5.54 0.00 5.34
363 406 2.527867 GGACACAAAACGGACGCGT 61.528 57.895 13.85 13.85 0.00 6.01
364 407 2.247267 GGACACAAAACGGACGCG 59.753 61.111 3.53 3.53 0.00 6.01
365 408 1.010462 GTGGACACAAAACGGACGC 60.010 57.895 0.00 0.00 0.00 5.19
366 409 1.274476 CGTGGACACAAAACGGACG 59.726 57.895 3.12 0.00 33.77 4.79
367 410 1.010462 GCGTGGACACAAAACGGAC 60.010 57.895 3.12 0.00 37.77 4.79
368 411 2.181521 GGCGTGGACACAAAACGGA 61.182 57.895 3.12 0.00 37.77 4.69
369 412 2.330041 GGCGTGGACACAAAACGG 59.670 61.111 3.12 0.00 37.77 4.44
370 413 2.052590 CGGCGTGGACACAAAACG 60.053 61.111 0.00 0.00 40.22 3.60
371 414 1.010462 GTCGGCGTGGACACAAAAC 60.010 57.895 6.85 0.00 36.91 2.43
372 415 2.526993 CGTCGGCGTGGACACAAAA 61.527 57.895 6.85 0.00 36.73 2.44
373 416 2.962786 CGTCGGCGTGGACACAAA 60.963 61.111 6.85 0.00 36.73 2.83
377 420 4.893601 TTTGCGTCGGCGTGGACA 62.894 61.111 12.58 0.00 44.10 4.02
378 421 3.362851 GATTTGCGTCGGCGTGGAC 62.363 63.158 12.58 0.00 44.10 4.02
379 422 3.115892 GATTTGCGTCGGCGTGGA 61.116 61.111 12.58 0.00 44.10 4.02
380 423 4.160635 GGATTTGCGTCGGCGTGG 62.161 66.667 12.58 0.54 44.10 4.94
381 424 4.499023 CGGATTTGCGTCGGCGTG 62.499 66.667 12.58 1.61 44.10 5.34
385 428 1.363145 TTTAGCCGGATTTGCGTCGG 61.363 55.000 5.05 0.00 45.84 4.79
386 429 0.444651 TTTTAGCCGGATTTGCGTCG 59.555 50.000 5.05 0.00 0.00 5.12
387 430 2.622546 TTTTTAGCCGGATTTGCGTC 57.377 45.000 5.05 0.00 0.00 5.19
403 446 0.617935 CCCATTTCCGGCCCATTTTT 59.382 50.000 0.00 0.00 0.00 1.94
404 447 0.546507 ACCCATTTCCGGCCCATTTT 60.547 50.000 0.00 0.00 0.00 1.82
405 448 0.975556 GACCCATTTCCGGCCCATTT 60.976 55.000 0.00 0.00 0.00 2.32
406 449 1.381191 GACCCATTTCCGGCCCATT 60.381 57.895 0.00 0.00 0.00 3.16
407 450 2.278738 GACCCATTTCCGGCCCAT 59.721 61.111 0.00 0.00 0.00 4.00
408 451 4.418328 CGACCCATTTCCGGCCCA 62.418 66.667 0.00 0.00 0.00 5.36
412 455 2.824041 CTGCCGACCCATTTCCGG 60.824 66.667 0.00 0.00 45.51 5.14
413 456 2.824041 CCTGCCGACCCATTTCCG 60.824 66.667 0.00 0.00 0.00 4.30
414 457 3.140814 GCCTGCCGACCCATTTCC 61.141 66.667 0.00 0.00 0.00 3.13
415 458 3.508840 CGCCTGCCGACCCATTTC 61.509 66.667 0.00 0.00 40.02 2.17
421 464 3.969250 TTTCATCCGCCTGCCGACC 62.969 63.158 0.00 0.00 40.02 4.79
422 465 2.435938 TTTCATCCGCCTGCCGAC 60.436 61.111 0.00 0.00 40.02 4.79
423 466 2.125147 CTTTCATCCGCCTGCCGA 60.125 61.111 0.00 0.00 40.02 5.54
424 467 3.880846 GCTTTCATCCGCCTGCCG 61.881 66.667 0.00 0.00 0.00 5.69
425 468 3.880846 CGCTTTCATCCGCCTGCC 61.881 66.667 0.00 0.00 0.00 4.85
426 469 1.813753 TACGCTTTCATCCGCCTGC 60.814 57.895 0.00 0.00 0.00 4.85
427 470 0.739462 TGTACGCTTTCATCCGCCTG 60.739 55.000 0.00 0.00 0.00 4.85
428 471 0.739813 GTGTACGCTTTCATCCGCCT 60.740 55.000 0.00 0.00 0.00 5.52
429 472 1.713830 GTGTACGCTTTCATCCGCC 59.286 57.895 0.00 0.00 0.00 6.13
430 473 1.343821 CGTGTACGCTTTCATCCGC 59.656 57.895 4.67 0.00 0.00 5.54
442 485 2.660612 CCCAAACGGACGCGTGTAC 61.661 63.158 20.70 0.00 0.00 2.90
443 486 2.356075 CCCAAACGGACGCGTGTA 60.356 61.111 20.70 0.00 0.00 2.90
444 487 4.534141 ACCCAAACGGACGCGTGT 62.534 61.111 20.70 6.40 34.64 4.49
445 488 3.708734 GACCCAAACGGACGCGTG 61.709 66.667 20.70 5.54 34.64 5.34
450 493 3.408851 GCGTCGACCCAAACGGAC 61.409 66.667 10.58 0.00 39.24 4.79
451 494 2.718747 AATGCGTCGACCCAAACGGA 62.719 55.000 10.58 0.00 43.29 4.69
452 495 2.322081 AATGCGTCGACCCAAACGG 61.322 57.895 10.58 0.00 39.24 4.44
453 496 1.154488 CAATGCGTCGACCCAAACG 60.154 57.895 10.58 0.00 41.68 3.60
454 497 1.209127 CCAATGCGTCGACCCAAAC 59.791 57.895 10.58 0.00 0.00 2.93
455 498 1.969064 CCCAATGCGTCGACCCAAA 60.969 57.895 10.58 0.00 0.00 3.28
456 499 2.359354 CCCAATGCGTCGACCCAA 60.359 61.111 10.58 0.00 0.00 4.12
463 506 1.862602 AAAAGTCGGCCCAATGCGTC 61.863 55.000 0.00 0.00 42.61 5.19
464 507 1.862602 GAAAAGTCGGCCCAATGCGT 61.863 55.000 0.00 0.00 42.61 5.24
465 508 1.154035 GAAAAGTCGGCCCAATGCG 60.154 57.895 0.00 0.00 42.61 4.73
466 509 0.109132 CAGAAAAGTCGGCCCAATGC 60.109 55.000 0.00 0.00 40.16 3.56
467 510 1.200020 GACAGAAAAGTCGGCCCAATG 59.800 52.381 0.00 0.00 0.00 2.82
468 511 1.534729 GACAGAAAAGTCGGCCCAAT 58.465 50.000 0.00 0.00 0.00 3.16
469 512 0.536460 GGACAGAAAAGTCGGCCCAA 60.536 55.000 0.00 0.00 39.42 4.12
470 513 1.072505 GGACAGAAAAGTCGGCCCA 59.927 57.895 0.00 0.00 39.42 5.36
471 514 2.033194 CGGACAGAAAAGTCGGCCC 61.033 63.158 0.00 0.00 39.42 5.80
472 515 3.562635 CGGACAGAAAAGTCGGCC 58.437 61.111 0.00 0.00 39.42 6.13
474 517 3.011760 GCGCGGACAGAAAAGTCGG 62.012 63.158 8.83 0.00 39.42 4.79
475 518 2.470286 GCGCGGACAGAAAAGTCG 59.530 61.111 8.83 0.00 39.42 4.18
476 519 1.503818 TTGGCGCGGACAGAAAAGTC 61.504 55.000 8.83 0.00 37.80 3.01
477 520 0.889186 ATTGGCGCGGACAGAAAAGT 60.889 50.000 8.83 0.00 0.00 2.66
478 521 0.240945 AATTGGCGCGGACAGAAAAG 59.759 50.000 8.83 0.00 0.00 2.27
479 522 0.239879 GAATTGGCGCGGACAGAAAA 59.760 50.000 8.83 0.00 0.00 2.29
480 523 0.886938 TGAATTGGCGCGGACAGAAA 60.887 50.000 8.83 0.00 0.00 2.52
481 524 0.886938 TTGAATTGGCGCGGACAGAA 60.887 50.000 8.83 0.00 0.00 3.02
482 525 0.886938 TTTGAATTGGCGCGGACAGA 60.887 50.000 8.83 0.00 0.00 3.41
483 526 0.729140 GTTTGAATTGGCGCGGACAG 60.729 55.000 8.83 0.00 0.00 3.51
484 527 1.284408 GTTTGAATTGGCGCGGACA 59.716 52.632 8.83 0.00 0.00 4.02
485 528 1.795962 CGTTTGAATTGGCGCGGAC 60.796 57.895 8.83 0.00 0.00 4.79
486 529 2.558821 CGTTTGAATTGGCGCGGA 59.441 55.556 8.83 0.00 0.00 5.54
487 530 2.503809 CCGTTTGAATTGGCGCGG 60.504 61.111 8.83 0.00 0.00 6.46
488 531 1.795962 GTCCGTTTGAATTGGCGCG 60.796 57.895 0.00 0.00 0.00 6.86
489 532 1.795962 CGTCCGTTTGAATTGGCGC 60.796 57.895 0.00 0.00 0.00 6.53
490 533 0.452122 GTCGTCCGTTTGAATTGGCG 60.452 55.000 0.00 0.00 0.00 5.69
491 534 0.452122 CGTCGTCCGTTTGAATTGGC 60.452 55.000 0.00 0.00 0.00 4.52
492 535 0.165079 CCGTCGTCCGTTTGAATTGG 59.835 55.000 0.00 0.00 33.66 3.16
493 536 0.863144 ACCGTCGTCCGTTTGAATTG 59.137 50.000 0.00 0.00 33.66 2.32
494 537 0.863144 CACCGTCGTCCGTTTGAATT 59.137 50.000 0.00 0.00 33.66 2.17
495 538 0.947180 CCACCGTCGTCCGTTTGAAT 60.947 55.000 0.00 0.00 33.66 2.57
496 539 1.592131 CCACCGTCGTCCGTTTGAA 60.592 57.895 0.00 0.00 33.66 2.69
497 540 2.027897 CCACCGTCGTCCGTTTGA 59.972 61.111 0.00 0.00 33.66 2.69
498 541 2.027897 TCCACCGTCGTCCGTTTG 59.972 61.111 0.00 0.00 33.66 2.93
499 542 2.028043 GTCCACCGTCGTCCGTTT 59.972 61.111 0.00 0.00 33.66 3.60
500 543 4.332637 CGTCCACCGTCGTCCGTT 62.333 66.667 0.00 0.00 33.66 4.44
502 545 2.807631 ATTTCGTCCACCGTCGTCCG 62.808 60.000 0.00 0.00 37.94 4.79
503 546 1.080298 ATTTCGTCCACCGTCGTCC 60.080 57.895 0.00 0.00 37.94 4.79
504 547 1.349259 CCATTTCGTCCACCGTCGTC 61.349 60.000 0.00 0.00 37.94 4.20
505 548 1.373748 CCATTTCGTCCACCGTCGT 60.374 57.895 0.00 0.00 37.94 4.34
506 549 0.459585 ATCCATTTCGTCCACCGTCG 60.460 55.000 0.00 0.00 37.94 5.12
507 550 1.287425 GATCCATTTCGTCCACCGTC 58.713 55.000 0.00 0.00 37.94 4.79
508 551 0.611200 TGATCCATTTCGTCCACCGT 59.389 50.000 0.00 0.00 37.94 4.83
509 552 1.006832 GTGATCCATTTCGTCCACCG 58.993 55.000 0.00 0.00 38.13 4.94
510 553 1.065418 AGGTGATCCATTTCGTCCACC 60.065 52.381 0.00 0.00 43.08 4.61
511 554 2.280628 GAGGTGATCCATTTCGTCCAC 58.719 52.381 0.00 0.00 35.89 4.02
512 555 1.905894 TGAGGTGATCCATTTCGTCCA 59.094 47.619 0.00 0.00 35.89 4.02
513 556 2.691409 TGAGGTGATCCATTTCGTCC 57.309 50.000 0.00 0.00 35.89 4.79
514 557 4.191544 TCAATGAGGTGATCCATTTCGTC 58.808 43.478 0.00 0.00 35.89 4.20
515 558 4.220693 TCAATGAGGTGATCCATTTCGT 57.779 40.909 0.00 0.00 35.89 3.85
516 559 4.637534 ACTTCAATGAGGTGATCCATTTCG 59.362 41.667 0.00 0.00 35.89 3.46
517 560 6.327934 CAACTTCAATGAGGTGATCCATTTC 58.672 40.000 0.00 0.00 36.43 2.17
518 561 5.337009 GCAACTTCAATGAGGTGATCCATTT 60.337 40.000 0.00 0.00 36.43 2.32
519 562 4.159135 GCAACTTCAATGAGGTGATCCATT 59.841 41.667 0.00 0.00 36.43 3.16
520 563 3.698040 GCAACTTCAATGAGGTGATCCAT 59.302 43.478 0.00 0.00 36.43 3.41
521 564 3.084039 GCAACTTCAATGAGGTGATCCA 58.916 45.455 0.00 0.00 36.43 3.41
522 565 3.350833 AGCAACTTCAATGAGGTGATCC 58.649 45.455 0.00 0.00 36.43 3.36
523 566 4.612932 GAGCAACTTCAATGAGGTGATC 57.387 45.455 0.00 0.00 41.84 2.92
524 567 4.298103 AGAGCAACTTCAATGAGGTGAT 57.702 40.909 0.00 0.00 36.43 3.06
525 568 3.777106 AGAGCAACTTCAATGAGGTGA 57.223 42.857 0.00 0.00 36.43 4.02
526 569 7.244166 CTATAAGAGCAACTTCAATGAGGTG 57.756 40.000 0.00 0.00 39.72 4.00
597 640 2.403252 AACTTTCCTGATGCGGTAGG 57.597 50.000 0.00 0.00 35.34 3.18
648 700 6.378564 TCAGGGTGTTTGTTCTTGAAATACAA 59.621 34.615 0.00 0.00 36.97 2.41
650 702 6.385649 TCAGGGTGTTTGTTCTTGAAATAC 57.614 37.500 0.00 0.00 0.00 1.89
657 709 2.665165 TGCATCAGGGTGTTTGTTCTT 58.335 42.857 0.00 0.00 0.00 2.52
696 748 3.746949 GAGACATGGCCTGCTCCGG 62.747 68.421 3.32 0.00 0.00 5.14
712 2787 1.800655 CGCCACGGAGAGATTGAAGAG 60.801 57.143 0.00 0.00 0.00 2.85
755 2845 4.452733 GCACGGAAGAGGACGGGG 62.453 72.222 0.00 0.00 33.32 5.73
806 2896 0.728466 GATGCGATCGGGCGTACTAC 60.728 60.000 18.30 0.00 35.06 2.73
807 2897 1.167781 TGATGCGATCGGGCGTACTA 61.168 55.000 18.30 0.00 35.06 1.82
808 2898 2.335369 GATGCGATCGGGCGTACT 59.665 61.111 18.30 0.00 35.06 2.73
820 2910 4.552365 ATGGGGAGCGGTGATGCG 62.552 66.667 0.00 0.00 40.67 4.73
839 2929 1.051008 TGGAGACGGATGGATGGATG 58.949 55.000 0.00 0.00 0.00 3.51
840 2930 1.806496 TTGGAGACGGATGGATGGAT 58.194 50.000 0.00 0.00 0.00 3.41
841 2931 1.578897 TTTGGAGACGGATGGATGGA 58.421 50.000 0.00 0.00 0.00 3.41
886 2976 3.591835 CTCTCGCTCTCGCCCTCC 61.592 72.222 0.00 0.00 35.26 4.30
890 2980 0.669077 TTATTCCTCTCGCTCTCGCC 59.331 55.000 0.00 0.00 35.26 5.54
929 3021 2.888863 GAGCGAGGTGGACTGAGG 59.111 66.667 0.00 0.00 0.00 3.86
996 3092 4.864334 GGGGGAGCGCTCATGTGG 62.864 72.222 36.27 0.00 0.00 4.17
1688 3806 2.427506 CAAAGACGAGAAAGGGAAGGG 58.572 52.381 0.00 0.00 0.00 3.95
1689 3807 2.427506 CCAAAGACGAGAAAGGGAAGG 58.572 52.381 0.00 0.00 0.00 3.46
1722 4087 2.093341 TCCCAGCCCGTAAAGTTGATAC 60.093 50.000 0.00 0.00 0.00 2.24
1859 4310 2.579860 AGATTCTGATCCAGGGCAAAGT 59.420 45.455 0.00 0.00 32.44 2.66
1890 4341 2.605818 CGCGGCAATAAAAGCTAGTGTA 59.394 45.455 0.00 0.00 0.00 2.90
1892 4343 1.856014 GCGCGGCAATAAAAGCTAGTG 60.856 52.381 8.83 0.00 0.00 2.74
1937 4388 9.985318 CAAGAACAATAAAGATCTAGCTTTGAG 57.015 33.333 0.00 0.00 38.47 3.02
2020 4791 4.900635 AAACGATCAAAAGTTGAGTGCT 57.099 36.364 0.00 0.00 43.98 4.40
2048 4819 6.262944 TGCTAGAACTATTTGCCATAACCATG 59.737 38.462 0.00 0.00 0.00 3.66
2111 4882 6.459066 CAACGATCCATAAGATGATACCACT 58.541 40.000 0.00 0.00 34.42 4.00
2117 4949 6.889301 AAATGCAACGATCCATAAGATGAT 57.111 33.333 0.00 0.00 34.42 2.45
2118 4950 7.984422 ATAAATGCAACGATCCATAAGATGA 57.016 32.000 0.00 0.00 34.42 2.92
2345 5181 4.986659 TGCTCTATCGACACATGATCATTG 59.013 41.667 5.16 10.39 0.00 2.82
2351 5187 3.774066 CAACTGCTCTATCGACACATGA 58.226 45.455 0.00 0.00 0.00 3.07
2636 5472 3.921119 AAAGTGCGAAGATTGATGCAA 57.079 38.095 0.00 0.00 39.34 4.08
2640 5476 4.526970 ACCCATAAAGTGCGAAGATTGAT 58.473 39.130 0.00 0.00 0.00 2.57
2915 5793 6.182039 TGGCAAAAGTAGAGAATTGATTCG 57.818 37.500 0.00 0.00 41.56 3.34
3191 6069 4.777366 TGAAGAGACATGTCACTATTCCCA 59.223 41.667 27.02 15.31 34.68 4.37
3251 6129 1.698506 AAGGGCTATCTCTGACCTCG 58.301 55.000 0.00 0.00 43.30 4.63
3592 6479 0.975040 GCTTCCTCTCTGGCTCTGGA 60.975 60.000 0.00 0.00 35.26 3.86
3667 6554 5.595952 GCCCAGAGAAGAATAATTGATGGTT 59.404 40.000 0.00 0.00 0.00 3.67
3684 6571 0.247460 TCGACACAATCAGCCCAGAG 59.753 55.000 0.00 0.00 0.00 3.35
3698 6585 2.031420 CGTACAGGTTCAAGTCTCGACA 60.031 50.000 0.00 0.00 0.00 4.35
3817 6704 2.264005 ACGGTACAACAAAGGCATCA 57.736 45.000 0.00 0.00 0.00 3.07
3835 6722 2.056577 CGGTTCCGACAACTCAACTAC 58.943 52.381 5.19 0.00 0.00 2.73
3875 6762 1.228245 GGAGTCAACCTGCAGCCAA 60.228 57.895 8.66 0.00 0.00 4.52
3882 6769 0.804989 GCCGAATTGGAGTCAACCTG 59.195 55.000 0.00 0.00 42.00 4.00
3887 6774 0.674581 CTGCTGCCGAATTGGAGTCA 60.675 55.000 0.00 0.00 42.00 3.41
3905 6792 6.295292 GGCAAAAGGAACCATGTAAAATCTCT 60.295 38.462 0.00 0.00 0.00 3.10
3906 6793 5.869344 GGCAAAAGGAACCATGTAAAATCTC 59.131 40.000 0.00 0.00 0.00 2.75
3972 6859 2.946329 TCCTTCGTCTGAGCAGATAGAC 59.054 50.000 3.19 0.00 39.97 2.59
4185 7074 7.416154 AACAAATTGATGCTGACTGAATTTG 57.584 32.000 0.00 0.00 44.24 2.32
4257 7154 8.067751 ACAGAGCAGTCATAATCAAAGTACTA 57.932 34.615 0.00 0.00 0.00 1.82
4258 7155 6.940739 ACAGAGCAGTCATAATCAAAGTACT 58.059 36.000 0.00 0.00 0.00 2.73
4259 7156 7.459486 CAACAGAGCAGTCATAATCAAAGTAC 58.541 38.462 0.00 0.00 0.00 2.73
4388 7286 4.347292 AGTGGATGTCATGCAGATCTACAT 59.653 41.667 7.35 7.62 33.63 2.29
4421 7319 1.004745 GAAGGGTGGAAAGGCAGATCA 59.995 52.381 0.00 0.00 0.00 2.92
4425 7323 0.322906 GGAGAAGGGTGGAAAGGCAG 60.323 60.000 0.00 0.00 0.00 4.85
4433 7331 2.534042 TCTACAGAGGAGAAGGGTGG 57.466 55.000 0.00 0.00 0.00 4.61
4436 7334 2.178984 AGGGATCTACAGAGGAGAAGGG 59.821 54.545 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.