Multiple sequence alignment - TraesCS6A01G314800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G314800 chr6A 100.000 4570 0 0 1 4570 551101399 551105968 0.000000e+00 8440.0
1 TraesCS6A01G314800 chr6A 78.824 1105 163 32 2793 3880 5063954 5065004 0.000000e+00 678.0
2 TraesCS6A01G314800 chr6A 78.071 1099 152 45 2803 3880 4895359 4894329 3.020000e-171 612.0
3 TraesCS6A01G314800 chr6A 80.000 330 59 7 1802 2128 5035564 5035889 2.130000e-58 237.0
4 TraesCS6A01G314800 chr6A 78.528 326 66 3 1802 2124 5063289 5063613 1.290000e-50 211.0
5 TraesCS6A01G314800 chr6A 85.185 81 5 1 457 530 610350317 610350237 4.900000e-10 76.8
6 TraesCS6A01G314800 chr6A 85.294 68 6 1 459 522 83363950 83364017 2.950000e-07 67.6
7 TraesCS6A01G314800 chr6D 94.570 2928 132 13 856 3777 404607376 404610282 0.000000e+00 4501.0
8 TraesCS6A01G314800 chr6D 91.067 750 45 10 3808 4546 404610280 404611018 0.000000e+00 994.0
9 TraesCS6A01G314800 chr6D 75.107 1639 279 77 1025 2603 41545288 41543719 0.000000e+00 647.0
10 TraesCS6A01G314800 chr6D 83.677 533 44 17 220 739 404606854 404607356 3.220000e-126 462.0
11 TraesCS6A01G314800 chr6D 89.231 65 4 3 738 800 401692626 401692689 1.360000e-10 78.7
12 TraesCS6A01G314800 chr1B 84.483 3203 384 69 893 4047 476882986 476879849 0.000000e+00 3057.0
13 TraesCS6A01G314800 chr1A 83.900 2472 286 55 907 3329 454527101 454524693 0.000000e+00 2257.0
14 TraesCS6A01G314800 chr1A 86.998 423 47 6 3294 3714 454524691 454524275 1.920000e-128 470.0
15 TraesCS6A01G314800 chr1D 85.887 2069 231 25 998 3038 355083249 355081214 0.000000e+00 2146.0
16 TraesCS6A01G314800 chr1D 86.581 626 70 10 3359 3975 355080755 355080135 0.000000e+00 678.0
17 TraesCS6A01G314800 chr4D 79.256 1210 204 33 1018 2212 73997970 73996793 0.000000e+00 800.0
18 TraesCS6A01G314800 chr4D 96.875 32 1 0 499 530 1401734 1401703 2.000000e-03 54.7
19 TraesCS6A01G314800 chr4B 78.268 1201 218 31 1018 2205 106060284 106059114 0.000000e+00 732.0
20 TraesCS6A01G314800 chr4B 74.814 1477 292 52 1018 2450 106049375 106047935 1.090000e-165 593.0
21 TraesCS6A01G314800 chr4B 100.000 31 0 0 500 530 605947586 605947616 1.780000e-04 58.4
22 TraesCS6A01G314800 chr4A 77.805 1203 222 34 1018 2204 514341545 514342718 0.000000e+00 701.0
23 TraesCS6A01G314800 chr6B 76.194 1214 240 39 1018 2214 50068181 50067000 3.040000e-166 595.0
24 TraesCS6A01G314800 chrUn 76.397 1199 221 41 1018 2197 137770608 137771763 1.420000e-164 590.0
25 TraesCS6A01G314800 chr3D 90.909 77 4 2 457 530 436254285 436254361 2.910000e-17 100.0
26 TraesCS6A01G314800 chr3B 89.610 77 5 2 457 530 571996802 571996878 1.350000e-15 95.3
27 TraesCS6A01G314800 chr5D 88.000 75 7 1 458 530 440652020 440652094 2.260000e-13 87.9
28 TraesCS6A01G314800 chr5D 94.340 53 3 0 739 791 526879780 526879832 1.050000e-11 82.4
29 TraesCS6A01G314800 chr2D 96.154 52 2 0 740 791 36493341 36493392 8.150000e-13 86.1
30 TraesCS6A01G314800 chr2A 86.585 82 6 1 454 530 711978751 711978832 8.150000e-13 86.1
31 TraesCS6A01G314800 chr5A 95.455 44 1 1 465 507 19913761 19913718 8.200000e-08 69.4
32 TraesCS6A01G314800 chr3A 86.441 59 5 1 468 523 560686185 560686243 1.370000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G314800 chr6A 551101399 551105968 4569 False 8440.000000 8440 100.000000 1 4570 1 chr6A.!!$F3 4569
1 TraesCS6A01G314800 chr6A 4894329 4895359 1030 True 612.000000 612 78.071000 2803 3880 1 chr6A.!!$R1 1077
2 TraesCS6A01G314800 chr6A 5063289 5065004 1715 False 444.500000 678 78.676000 1802 3880 2 chr6A.!!$F4 2078
3 TraesCS6A01G314800 chr6D 404606854 404611018 4164 False 1985.666667 4501 89.771333 220 4546 3 chr6D.!!$F2 4326
4 TraesCS6A01G314800 chr6D 41543719 41545288 1569 True 647.000000 647 75.107000 1025 2603 1 chr6D.!!$R1 1578
5 TraesCS6A01G314800 chr1B 476879849 476882986 3137 True 3057.000000 3057 84.483000 893 4047 1 chr1B.!!$R1 3154
6 TraesCS6A01G314800 chr1A 454524275 454527101 2826 True 1363.500000 2257 85.449000 907 3714 2 chr1A.!!$R1 2807
7 TraesCS6A01G314800 chr1D 355080135 355083249 3114 True 1412.000000 2146 86.234000 998 3975 2 chr1D.!!$R1 2977
8 TraesCS6A01G314800 chr4D 73996793 73997970 1177 True 800.000000 800 79.256000 1018 2212 1 chr4D.!!$R2 1194
9 TraesCS6A01G314800 chr4B 106059114 106060284 1170 True 732.000000 732 78.268000 1018 2205 1 chr4B.!!$R2 1187
10 TraesCS6A01G314800 chr4B 106047935 106049375 1440 True 593.000000 593 74.814000 1018 2450 1 chr4B.!!$R1 1432
11 TraesCS6A01G314800 chr4A 514341545 514342718 1173 False 701.000000 701 77.805000 1018 2204 1 chr4A.!!$F1 1186
12 TraesCS6A01G314800 chr6B 50067000 50068181 1181 True 595.000000 595 76.194000 1018 2214 1 chr6B.!!$R1 1196
13 TraesCS6A01G314800 chrUn 137770608 137771763 1155 False 590.000000 590 76.397000 1018 2197 1 chrUn.!!$F1 1179

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
384 385 0.108945 GGTTTCGAGTCACTACGGGG 60.109 60.0 0.00 0.0 0.00 5.73 F
405 407 0.254299 AGGGGAGGGTTGATGGGAAT 60.254 55.0 0.00 0.0 0.00 3.01 F
476 478 0.339162 TGTACCCCCTTCGTCCCATA 59.661 55.0 0.00 0.0 0.00 2.74 F
1890 1951 0.462759 GGAAGGTGGATCCAGAAGCG 60.463 60.0 16.81 0.0 39.02 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2033 2102 0.532573 TCGCCCTGACTTTAGCTCTG 59.467 55.000 0.00 0.00 0.00 3.35 R
2262 2357 1.016627 TTCGCAAGCTCCATATGTGC 58.983 50.000 1.24 5.94 37.18 4.57 R
2279 2374 1.806542 TGGCGCAGAGAATTGTCTTTC 59.193 47.619 10.83 0.00 32.80 2.62 R
3715 4085 0.603707 ACAACCACGGCTGATCACAG 60.604 55.000 0.00 0.00 45.91 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 7.675962 AAAACCCAAAGAAAACTGTAAAACC 57.324 32.000 0.00 0.00 0.00 3.27
58 59 5.347620 ACCCAAAGAAAACTGTAAAACCC 57.652 39.130 0.00 0.00 0.00 4.11
59 60 4.778427 ACCCAAAGAAAACTGTAAAACCCA 59.222 37.500 0.00 0.00 0.00 4.51
60 61 5.427157 ACCCAAAGAAAACTGTAAAACCCAT 59.573 36.000 0.00 0.00 0.00 4.00
61 62 5.757808 CCCAAAGAAAACTGTAAAACCCATG 59.242 40.000 0.00 0.00 0.00 3.66
62 63 6.407525 CCCAAAGAAAACTGTAAAACCCATGA 60.408 38.462 0.00 0.00 0.00 3.07
63 64 6.701400 CCAAAGAAAACTGTAAAACCCATGAG 59.299 38.462 0.00 0.00 0.00 2.90
64 65 6.405278 AAGAAAACTGTAAAACCCATGAGG 57.595 37.500 0.00 0.00 43.78 3.86
65 66 5.701224 AGAAAACTGTAAAACCCATGAGGA 58.299 37.500 7.17 0.00 39.89 3.71
66 67 6.133356 AGAAAACTGTAAAACCCATGAGGAA 58.867 36.000 7.17 0.00 39.89 3.36
67 68 6.609616 AGAAAACTGTAAAACCCATGAGGAAA 59.390 34.615 7.17 0.00 39.89 3.13
68 69 5.784578 AACTGTAAAACCCATGAGGAAAC 57.215 39.130 7.17 1.49 39.89 2.78
69 70 3.818773 ACTGTAAAACCCATGAGGAAACG 59.181 43.478 7.17 0.00 39.89 3.60
70 71 4.069304 CTGTAAAACCCATGAGGAAACGA 58.931 43.478 7.17 0.00 39.89 3.85
71 72 4.462133 TGTAAAACCCATGAGGAAACGAA 58.538 39.130 7.17 0.00 39.89 3.85
72 73 4.517453 TGTAAAACCCATGAGGAAACGAAG 59.483 41.667 7.17 0.00 39.89 3.79
73 74 3.502123 AAACCCATGAGGAAACGAAGA 57.498 42.857 7.17 0.00 39.89 2.87
74 75 3.502123 AACCCATGAGGAAACGAAGAA 57.498 42.857 7.17 0.00 39.89 2.52
75 76 3.502123 ACCCATGAGGAAACGAAGAAA 57.498 42.857 7.17 0.00 39.89 2.52
76 77 3.827722 ACCCATGAGGAAACGAAGAAAA 58.172 40.909 7.17 0.00 39.89 2.29
77 78 3.821033 ACCCATGAGGAAACGAAGAAAAG 59.179 43.478 7.17 0.00 39.89 2.27
78 79 4.072131 CCCATGAGGAAACGAAGAAAAGA 58.928 43.478 0.00 0.00 38.24 2.52
79 80 4.083271 CCCATGAGGAAACGAAGAAAAGAC 60.083 45.833 0.00 0.00 38.24 3.01
80 81 4.083271 CCATGAGGAAACGAAGAAAAGACC 60.083 45.833 0.00 0.00 36.89 3.85
81 82 3.473625 TGAGGAAACGAAGAAAAGACCC 58.526 45.455 0.00 0.00 0.00 4.46
82 83 2.812591 GAGGAAACGAAGAAAAGACCCC 59.187 50.000 0.00 0.00 0.00 4.95
83 84 2.173996 AGGAAACGAAGAAAAGACCCCA 59.826 45.455 0.00 0.00 0.00 4.96
84 85 2.953648 GGAAACGAAGAAAAGACCCCAA 59.046 45.455 0.00 0.00 0.00 4.12
85 86 3.382227 GGAAACGAAGAAAAGACCCCAAA 59.618 43.478 0.00 0.00 0.00 3.28
86 87 4.499188 GGAAACGAAGAAAAGACCCCAAAG 60.499 45.833 0.00 0.00 0.00 2.77
87 88 3.570912 ACGAAGAAAAGACCCCAAAGA 57.429 42.857 0.00 0.00 0.00 2.52
88 89 3.893521 ACGAAGAAAAGACCCCAAAGAA 58.106 40.909 0.00 0.00 0.00 2.52
89 90 4.274978 ACGAAGAAAAGACCCCAAAGAAA 58.725 39.130 0.00 0.00 0.00 2.52
90 91 4.893524 ACGAAGAAAAGACCCCAAAGAAAT 59.106 37.500 0.00 0.00 0.00 2.17
91 92 5.009710 ACGAAGAAAAGACCCCAAAGAAATC 59.990 40.000 0.00 0.00 0.00 2.17
92 93 5.241728 CGAAGAAAAGACCCCAAAGAAATCT 59.758 40.000 0.00 0.00 0.00 2.40
93 94 6.410942 AAGAAAAGACCCCAAAGAAATCTG 57.589 37.500 0.00 0.00 0.00 2.90
94 95 5.705400 AGAAAAGACCCCAAAGAAATCTGA 58.295 37.500 0.00 0.00 0.00 3.27
95 96 6.318112 AGAAAAGACCCCAAAGAAATCTGAT 58.682 36.000 0.00 0.00 0.00 2.90
96 97 5.990120 AAAGACCCCAAAGAAATCTGATG 57.010 39.130 0.00 0.00 0.00 3.07
97 98 4.934797 AGACCCCAAAGAAATCTGATGA 57.065 40.909 0.00 0.00 0.00 2.92
98 99 5.261040 AGACCCCAAAGAAATCTGATGAA 57.739 39.130 0.00 0.00 0.00 2.57
99 100 5.644188 AGACCCCAAAGAAATCTGATGAAA 58.356 37.500 0.00 0.00 0.00 2.69
100 101 6.077322 AGACCCCAAAGAAATCTGATGAAAA 58.923 36.000 0.00 0.00 0.00 2.29
101 102 6.015095 AGACCCCAAAGAAATCTGATGAAAAC 60.015 38.462 0.00 0.00 0.00 2.43
102 103 5.840693 ACCCCAAAGAAATCTGATGAAAACT 59.159 36.000 0.00 0.00 0.00 2.66
103 104 7.010160 ACCCCAAAGAAATCTGATGAAAACTA 58.990 34.615 0.00 0.00 0.00 2.24
104 105 7.508977 ACCCCAAAGAAATCTGATGAAAACTAA 59.491 33.333 0.00 0.00 0.00 2.24
105 106 8.031277 CCCCAAAGAAATCTGATGAAAACTAAG 58.969 37.037 0.00 0.00 0.00 2.18
106 107 8.796475 CCCAAAGAAATCTGATGAAAACTAAGA 58.204 33.333 0.00 0.00 0.00 2.10
197 198 9.625747 AAAAAGGAAAATTCATTAAAAGCTGGA 57.374 25.926 0.00 0.00 30.13 3.86
198 199 9.625747 AAAAGGAAAATTCATTAAAAGCTGGAA 57.374 25.926 0.00 0.00 30.13 3.53
199 200 9.797642 AAAGGAAAATTCATTAAAAGCTGGAAT 57.202 25.926 0.00 0.00 30.13 3.01
206 207 9.921637 AATTCATTAAAAGCTGGAATAAAACGA 57.078 25.926 0.00 0.00 0.00 3.85
207 208 9.921637 ATTCATTAAAAGCTGGAATAAAACGAA 57.078 25.926 0.00 0.00 0.00 3.85
208 209 8.964420 TCATTAAAAGCTGGAATAAAACGAAG 57.036 30.769 0.00 0.00 0.00 3.79
209 210 8.788806 TCATTAAAAGCTGGAATAAAACGAAGA 58.211 29.630 0.00 0.00 0.00 2.87
210 211 9.405587 CATTAAAAGCTGGAATAAAACGAAGAA 57.594 29.630 0.00 0.00 0.00 2.52
211 212 9.974980 ATTAAAAGCTGGAATAAAACGAAGAAA 57.025 25.926 0.00 0.00 0.00 2.52
212 213 9.804758 TTAAAAGCTGGAATAAAACGAAGAAAA 57.195 25.926 0.00 0.00 0.00 2.29
213 214 8.887036 AAAAGCTGGAATAAAACGAAGAAAAT 57.113 26.923 0.00 0.00 0.00 1.82
214 215 8.887036 AAAGCTGGAATAAAACGAAGAAAATT 57.113 26.923 0.00 0.00 0.00 1.82
215 216 7.873739 AGCTGGAATAAAACGAAGAAAATTG 57.126 32.000 0.00 0.00 0.00 2.32
216 217 7.433680 AGCTGGAATAAAACGAAGAAAATTGT 58.566 30.769 0.00 0.00 0.00 2.71
217 218 7.382218 AGCTGGAATAAAACGAAGAAAATTGTG 59.618 33.333 0.00 0.00 0.00 3.33
218 219 7.381139 GCTGGAATAAAACGAAGAAAATTGTGA 59.619 33.333 0.00 0.00 0.00 3.58
219 220 9.243637 CTGGAATAAAACGAAGAAAATTGTGAA 57.756 29.630 0.00 0.00 0.00 3.18
220 221 9.587772 TGGAATAAAACGAAGAAAATTGTGAAA 57.412 25.926 0.00 0.00 0.00 2.69
246 247 9.438228 AAAACCAAAATAACCGAAGAAGAAAAA 57.562 25.926 0.00 0.00 0.00 1.94
260 261 4.584743 AGAAGAAAAACCCAGCGAAGAAAT 59.415 37.500 0.00 0.00 0.00 2.17
265 266 2.859165 ACCCAGCGAAGAAATTGAGA 57.141 45.000 0.00 0.00 0.00 3.27
269 270 4.229876 CCCAGCGAAGAAATTGAGAAAAC 58.770 43.478 0.00 0.00 0.00 2.43
347 348 1.077068 CTCCCTCCTCTCTCGCTGT 60.077 63.158 0.00 0.00 0.00 4.40
351 352 0.891373 CCTCCTCTCTCGCTGTTTCA 59.109 55.000 0.00 0.00 0.00 2.69
357 358 1.867233 TCTCTCGCTGTTTCACTTTGC 59.133 47.619 0.00 0.00 0.00 3.68
358 359 0.944386 TCTCGCTGTTTCACTTTGCC 59.056 50.000 0.00 0.00 0.00 4.52
364 365 2.289547 GCTGTTTCACTTTGCCGACTAA 59.710 45.455 0.00 0.00 0.00 2.24
374 375 0.963962 TGCCGACTAAGGTTTCGAGT 59.036 50.000 0.00 0.00 37.43 4.18
379 380 3.438087 CCGACTAAGGTTTCGAGTCACTA 59.562 47.826 0.00 0.00 39.70 2.74
384 385 0.108945 GGTTTCGAGTCACTACGGGG 60.109 60.000 0.00 0.00 0.00 5.73
385 386 0.883833 GTTTCGAGTCACTACGGGGA 59.116 55.000 0.00 0.00 0.00 4.81
405 407 0.254299 AGGGGAGGGTTGATGGGAAT 60.254 55.000 0.00 0.00 0.00 3.01
417 419 5.395990 GGTTGATGGGAATCTTCAAATGCAT 60.396 40.000 0.00 0.00 39.97 3.96
426 428 3.411446 TCTTCAAATGCATCCACTCGTT 58.589 40.909 0.00 0.00 0.00 3.85
433 435 2.279741 TGCATCCACTCGTTCTATTGC 58.720 47.619 0.00 0.00 0.00 3.56
444 446 1.594862 GTTCTATTGCGCGATTGAGCT 59.405 47.619 22.24 0.54 41.98 4.09
449 451 1.152510 TTGCGCGATTGAGCTTACAA 58.847 45.000 12.10 0.00 41.98 2.41
462 464 9.884465 GATTGAGCTTACAAATTCATATGTACC 57.116 33.333 1.90 0.00 32.07 3.34
464 466 6.770785 TGAGCTTACAAATTCATATGTACCCC 59.229 38.462 1.90 0.00 32.07 4.95
467 469 6.549736 GCTTACAAATTCATATGTACCCCCTT 59.450 38.462 1.90 0.00 32.07 3.95
469 471 5.130350 ACAAATTCATATGTACCCCCTTCG 58.870 41.667 1.90 0.00 0.00 3.79
476 478 0.339162 TGTACCCCCTTCGTCCCATA 59.661 55.000 0.00 0.00 0.00 2.74
487 489 5.103000 CCTTCGTCCCATAATATAAGAGCG 58.897 45.833 0.00 0.00 0.00 5.03
488 490 4.106029 TCGTCCCATAATATAAGAGCGC 57.894 45.455 0.00 0.00 0.00 5.92
491 493 4.929808 CGTCCCATAATATAAGAGCGCTTT 59.070 41.667 13.26 1.42 35.56 3.51
493 495 6.603095 GTCCCATAATATAAGAGCGCTTTTG 58.397 40.000 22.35 5.08 35.56 2.44
498 500 4.778842 ATATAAGAGCGCTTTTGACACG 57.221 40.909 22.35 0.00 35.56 4.49
499 501 1.860676 TAAGAGCGCTTTTGACACGT 58.139 45.000 22.35 3.65 35.56 4.49
521 532 8.604035 CACGTGTCAAAAGCACTCTTATATTAT 58.396 33.333 7.58 0.00 34.91 1.28
526 537 9.289782 GTCAAAAGCACTCTTATATTATGGGAT 57.710 33.333 0.00 0.00 31.02 3.85
528 539 8.517878 CAAAAGCACTCTTATATTATGGGATGG 58.482 37.037 0.00 0.00 31.02 3.51
581 592 5.382618 AGAAAAGATGCATCAACTTCCAC 57.617 39.130 27.81 10.59 0.00 4.02
641 654 7.338800 AGGTTGACCTTAAATATGCATCTTG 57.661 36.000 0.19 0.00 46.09 3.02
642 655 7.118723 AGGTTGACCTTAAATATGCATCTTGA 58.881 34.615 0.19 0.00 46.09 3.02
643 656 7.781693 AGGTTGACCTTAAATATGCATCTTGAT 59.218 33.333 0.19 0.00 46.09 2.57
681 694 5.034554 TGCATCTCGATGTTCTTGTTTTC 57.965 39.130 8.54 0.00 40.80 2.29
791 804 8.974060 TTTTAAGGATGTCACAACTAAACTCT 57.026 30.769 0.00 0.00 0.00 3.24
792 805 8.603242 TTTAAGGATGTCACAACTAAACTCTC 57.397 34.615 0.00 0.00 0.00 3.20
793 806 5.808366 AGGATGTCACAACTAAACTCTCA 57.192 39.130 0.00 0.00 0.00 3.27
794 807 5.542779 AGGATGTCACAACTAAACTCTCAC 58.457 41.667 0.00 0.00 0.00 3.51
795 808 4.386049 GGATGTCACAACTAAACTCTCACG 59.614 45.833 0.00 0.00 0.00 4.35
796 809 4.642445 TGTCACAACTAAACTCTCACGA 57.358 40.909 0.00 0.00 0.00 4.35
797 810 5.001237 TGTCACAACTAAACTCTCACGAA 57.999 39.130 0.00 0.00 0.00 3.85
798 811 5.597806 TGTCACAACTAAACTCTCACGAAT 58.402 37.500 0.00 0.00 0.00 3.34
799 812 6.741109 TGTCACAACTAAACTCTCACGAATA 58.259 36.000 0.00 0.00 0.00 1.75
800 813 7.204604 TGTCACAACTAAACTCTCACGAATAA 58.795 34.615 0.00 0.00 0.00 1.40
801 814 7.168637 TGTCACAACTAAACTCTCACGAATAAC 59.831 37.037 0.00 0.00 0.00 1.89
803 816 5.118203 ACAACTAAACTCTCACGAATAACGC 59.882 40.000 0.00 0.00 46.94 4.84
804 817 4.801891 ACTAAACTCTCACGAATAACGCA 58.198 39.130 0.00 0.00 46.94 5.24
805 818 4.857588 ACTAAACTCTCACGAATAACGCAG 59.142 41.667 0.00 0.00 46.94 5.18
806 819 1.630148 ACTCTCACGAATAACGCAGC 58.370 50.000 0.00 0.00 46.94 5.25
807 820 1.067846 ACTCTCACGAATAACGCAGCA 60.068 47.619 0.00 0.00 46.94 4.41
808 821 1.992667 CTCTCACGAATAACGCAGCAA 59.007 47.619 0.00 0.00 46.94 3.91
809 822 1.724623 TCTCACGAATAACGCAGCAAC 59.275 47.619 0.00 0.00 46.94 4.17
810 823 1.459209 CTCACGAATAACGCAGCAACA 59.541 47.619 0.00 0.00 46.94 3.33
811 824 1.867865 TCACGAATAACGCAGCAACAA 59.132 42.857 0.00 0.00 46.94 2.83
812 825 2.096466 TCACGAATAACGCAGCAACAAG 60.096 45.455 0.00 0.00 46.94 3.16
813 826 1.196808 ACGAATAACGCAGCAACAAGG 59.803 47.619 0.00 0.00 46.94 3.61
814 827 1.465689 CGAATAACGCAGCAACAAGGG 60.466 52.381 0.00 0.00 34.51 3.95
815 828 1.810151 GAATAACGCAGCAACAAGGGA 59.190 47.619 0.00 0.00 0.00 4.20
816 829 1.904287 ATAACGCAGCAACAAGGGAA 58.096 45.000 0.00 0.00 0.00 3.97
817 830 1.681538 TAACGCAGCAACAAGGGAAA 58.318 45.000 0.00 0.00 0.00 3.13
818 831 0.820871 AACGCAGCAACAAGGGAAAA 59.179 45.000 0.00 0.00 0.00 2.29
819 832 0.820871 ACGCAGCAACAAGGGAAAAA 59.179 45.000 0.00 0.00 0.00 1.94
860 873 1.209127 GACCACAAACATTCGGCCG 59.791 57.895 22.12 22.12 0.00 6.13
1541 1569 0.664166 GACCGTGTCGTTAAGGCGAA 60.664 55.000 0.00 0.00 42.82 4.70
1845 1906 1.293179 GGGGTTTGCCTGCATCAAC 59.707 57.895 0.00 0.00 34.45 3.18
1882 1943 1.351017 TGTGGTCAAGGAAGGTGGATC 59.649 52.381 0.00 0.00 0.00 3.36
1890 1951 0.462759 GGAAGGTGGATCCAGAAGCG 60.463 60.000 16.81 0.00 39.02 4.68
1941 2004 5.607939 TCGAGCTGGAGAAAATTATACCA 57.392 39.130 0.00 0.00 0.00 3.25
2073 2142 1.738099 CAGGAAGGTTGACGAGCCG 60.738 63.158 0.00 0.00 0.00 5.52
2129 2202 5.446860 CTTCTACACTCCAGGTATAGGTGA 58.553 45.833 0.00 0.00 0.00 4.02
2150 2223 3.027419 GCCCTTGCTTCTTGTCTGT 57.973 52.632 0.00 0.00 33.53 3.41
2151 2224 1.322442 GCCCTTGCTTCTTGTCTGTT 58.678 50.000 0.00 0.00 33.53 3.16
2152 2225 1.000938 GCCCTTGCTTCTTGTCTGTTG 60.001 52.381 0.00 0.00 33.53 3.33
2153 2226 2.575532 CCCTTGCTTCTTGTCTGTTGA 58.424 47.619 0.00 0.00 0.00 3.18
2279 2374 0.949397 ATGCACATATGGAGCTTGCG 59.051 50.000 19.08 0.00 35.90 4.85
2295 2392 3.486584 CTTGCGAAAGACAATTCTCTGC 58.513 45.455 0.00 0.00 0.00 4.26
2298 2399 1.201965 CGAAAGACAATTCTCTGCGCC 60.202 52.381 4.18 0.00 0.00 6.53
2337 2439 5.743636 ATGGCACTGGAAAACATAATGTT 57.256 34.783 0.00 0.00 43.41 2.71
2385 2491 1.961394 AGGATCATGACCATGCATTGC 59.039 47.619 14.31 0.46 38.65 3.56
2436 2562 4.518970 TGAATCCTGTTACCTTGTTTCAGC 59.481 41.667 0.00 0.00 0.00 4.26
2482 2611 2.656947 TTGTGGCTTAGCTGAAGGTT 57.343 45.000 3.59 0.00 35.49 3.50
2533 2669 6.112734 CACTGGAATTGGTACTAGCACATAA 58.887 40.000 0.00 0.00 0.00 1.90
2585 2721 4.178545 AGTTATGAGTTTTGTGCATGCC 57.821 40.909 16.68 7.25 0.00 4.40
2642 2791 7.341445 ACAAGGATTAACTAAACAAAGTGCA 57.659 32.000 0.00 0.00 0.00 4.57
2648 2797 6.928979 TTAACTAAACAAAGTGCACTGCTA 57.071 33.333 22.49 6.77 0.00 3.49
2682 2831 7.013942 TCCGAGCTGCTACTAATAAGTATGAAA 59.986 37.037 0.15 0.00 37.57 2.69
2687 2836 9.622004 GCTGCTACTAATAAGTATGAAATCGTA 57.378 33.333 0.00 0.00 37.57 3.43
2842 2991 1.312371 TGTTTGCCTAATGCTCGGCC 61.312 55.000 0.00 0.00 45.71 6.13
3034 3188 9.469807 TCACCACAAAACATTTATCATTTGTAC 57.530 29.630 2.79 0.00 42.36 2.90
3060 3297 0.105709 TCTGACAGGTGTGGGACTCA 60.106 55.000 1.81 0.00 0.00 3.41
3077 3314 6.486657 TGGGACTCAGATGTTTCTTACTTTTG 59.513 38.462 0.00 0.00 0.00 2.44
3081 3318 8.316640 ACTCAGATGTTTCTTACTTTTGCTAG 57.683 34.615 0.00 0.00 0.00 3.42
3253 3505 0.670162 TCCTTTTTGCTGCTGCTGTC 59.330 50.000 17.00 1.84 40.48 3.51
3300 3554 4.156556 TGAAGTGCCTGCTAGCTTAAAATG 59.843 41.667 17.23 0.00 0.00 2.32
3400 3752 3.315191 TGCTTCAAGTTACTTTCTGGCAC 59.685 43.478 0.00 0.00 0.00 5.01
3460 3814 9.054580 ACCTTTGGGACTAGTTATAAGTACAAT 57.945 33.333 0.00 0.00 36.25 2.71
3566 3924 1.066587 GGCGCTAGCGAAGACTCAT 59.933 57.895 39.52 0.00 46.35 2.90
3603 3961 2.647337 GCTCAATAGTGATGCATTGCG 58.353 47.619 0.00 0.00 33.14 4.85
3715 4085 0.524862 CATGAAGGGTGCAAGTCAGC 59.475 55.000 0.00 0.00 42.24 4.26
3786 4157 5.877564 GCTAGAGAGCTGTATTTTGGTTTCT 59.122 40.000 0.00 0.00 45.98 2.52
3787 4158 7.042335 GCTAGAGAGCTGTATTTTGGTTTCTA 58.958 38.462 0.00 0.00 45.98 2.10
3791 4162 6.914259 AGAGCTGTATTTTGGTTTCTAAAGC 58.086 36.000 0.00 0.00 36.95 3.51
3792 4163 6.025749 AGCTGTATTTTGGTTTCTAAAGCC 57.974 37.500 2.47 0.00 35.63 4.35
3801 4172 3.316868 TGGTTTCTAAAGCCGGTTTCTTG 59.683 43.478 3.21 0.00 35.63 3.02
3848 4252 0.107643 TGCAAGTCACCATGTTCGGA 59.892 50.000 0.00 0.00 0.00 4.55
3882 4287 2.219674 GTCGAATTCGTCCTGATCATGC 59.780 50.000 25.93 1.87 40.80 4.06
3906 4313 1.584308 GCGCGAACTGTATCTCTGTTC 59.416 52.381 12.10 7.28 45.30 3.18
3923 4330 2.135933 GTTCAGCATATCAGGCGTACC 58.864 52.381 0.00 0.00 36.08 3.34
3945 4352 7.891498 ACCTCTGTTACTGTTTGGTTAAATT 57.109 32.000 0.00 0.00 0.00 1.82
3970 4377 2.345641 CGAGTCGGCTACATGAAACTTG 59.654 50.000 4.10 0.00 0.00 3.16
3999 4406 0.182775 GGGTCCTACGCCATTTCCAT 59.817 55.000 0.00 0.00 0.00 3.41
4043 4451 1.011333 CGGTGTTTTCCGTGTCTTGT 58.989 50.000 0.00 0.00 44.77 3.16
4047 4455 4.784079 CGGTGTTTTCCGTGTCTTGTAAAG 60.784 45.833 0.00 0.00 44.67 1.85
4049 4457 3.242478 TGTTTTCCGTGTCTTGTAAAGCG 60.242 43.478 0.00 0.00 45.70 4.68
4050 4458 1.504359 TTCCGTGTCTTGTAAAGCGG 58.496 50.000 0.00 0.00 45.70 5.52
4057 4465 1.933853 GTCTTGTAAAGCGGCATCGAT 59.066 47.619 1.45 0.00 45.70 3.59
4059 4467 3.554324 GTCTTGTAAAGCGGCATCGATTA 59.446 43.478 1.45 0.00 44.69 1.75
4063 4471 0.657840 AAAGCGGCATCGATTAGCAC 59.342 50.000 15.86 5.82 44.69 4.40
4085 4501 5.006746 CACTGTAAGAGTTTCTGGACACAAC 59.993 44.000 0.00 0.00 37.43 3.32
4132 4551 3.806521 GCTCGAGTCTGAATTGCATATGT 59.193 43.478 15.13 0.00 0.00 2.29
4140 4559 6.996879 AGTCTGAATTGCATATGTATTGCTCT 59.003 34.615 4.29 0.00 40.77 4.09
4141 4560 7.501559 AGTCTGAATTGCATATGTATTGCTCTT 59.498 33.333 4.29 0.00 40.77 2.85
4142 4561 7.590322 GTCTGAATTGCATATGTATTGCTCTTG 59.410 37.037 4.29 0.00 40.77 3.02
4143 4562 6.210796 TGAATTGCATATGTATTGCTCTTGC 58.789 36.000 4.29 0.00 40.77 4.01
4144 4563 6.040054 TGAATTGCATATGTATTGCTCTTGCT 59.960 34.615 4.29 0.00 40.77 3.91
4145 4564 5.428496 TTGCATATGTATTGCTCTTGCTC 57.572 39.130 4.29 0.00 40.77 4.26
4157 4576 2.093021 GCTCTTGCTCCCTCTTCATTCT 60.093 50.000 0.00 0.00 36.03 2.40
4175 4594 7.595819 TCATTCTTTTGGATAAACAGTGGTT 57.404 32.000 0.00 0.00 39.43 3.67
4182 4601 8.698973 TTTTGGATAAACAGTGGTTCAGAATA 57.301 30.769 0.00 0.00 35.82 1.75
4184 4603 5.872617 TGGATAAACAGTGGTTCAGAATACG 59.127 40.000 0.00 0.00 35.82 3.06
4198 4617 5.448438 TCAGAATACGTTGAAATGTGTTGC 58.552 37.500 0.00 0.00 30.75 4.17
4227 4646 2.133553 CTGATCAGACGACCATCATGC 58.866 52.381 18.34 0.00 0.00 4.06
4229 4648 0.877649 ATCAGACGACCATCATGCGC 60.878 55.000 0.00 0.00 0.00 6.09
4231 4650 1.227089 AGACGACCATCATGCGCTC 60.227 57.895 9.73 0.00 0.00 5.03
4251 4670 4.678509 TCCGATGATTTTTCAAACGGAG 57.321 40.909 17.24 2.10 42.58 4.63
4268 4687 4.268359 ACGGAGTTACTAGTTCACTAGGG 58.732 47.826 16.65 0.00 44.61 3.53
4302 4721 3.146066 GTTGCTGTGTTTCCAGGACATA 58.854 45.455 0.00 0.00 32.08 2.29
4366 4785 6.414732 TGCAATACTGTAGAAGGCAAATAGT 58.585 36.000 0.00 0.00 0.00 2.12
4368 4787 6.316390 GCAATACTGTAGAAGGCAAATAGTGT 59.684 38.462 0.00 0.00 0.00 3.55
4409 4828 3.635591 ACAGATTTTGGTGGATGATCCC 58.364 45.455 9.36 0.04 35.03 3.85
4418 4837 0.769247 TGGATGATCCCCTGCATCAG 59.231 55.000 9.36 0.00 42.00 2.90
4433 4852 3.752412 CATCAGCGAAGAGATGCAAAA 57.248 42.857 0.00 0.00 35.51 2.44
4441 4860 4.493872 GCGAAGAGATGCAAAACTGATCTC 60.494 45.833 3.52 3.52 41.64 2.75
4504 4923 1.203994 TGTACTCCAGCTTCTTACGGC 59.796 52.381 0.00 0.00 0.00 5.68
4515 4934 1.956170 CTTACGGCGCCCATGCTAG 60.956 63.158 23.46 7.36 34.43 3.42
4530 4949 1.162800 GCTAGCAAGAAGATGGCCGG 61.163 60.000 10.63 0.00 33.59 6.13
4552 4971 4.614036 CGGGCCTGGGTTTGGGTT 62.614 66.667 2.57 0.00 0.00 4.11
4553 4972 2.122592 GGGCCTGGGTTTGGGTTT 60.123 61.111 0.84 0.00 0.00 3.27
4554 4973 2.214216 GGGCCTGGGTTTGGGTTTC 61.214 63.158 0.84 0.00 0.00 2.78
4555 4974 2.214216 GGCCTGGGTTTGGGTTTCC 61.214 63.158 0.00 0.00 0.00 3.13
4556 4975 2.214216 GCCTGGGTTTGGGTTTCCC 61.214 63.158 0.00 0.00 45.71 3.97
4568 4987 1.092348 GGTTTCCCCTACATCAACGC 58.908 55.000 0.00 0.00 0.00 4.84
4569 4988 1.339727 GGTTTCCCCTACATCAACGCT 60.340 52.381 0.00 0.00 0.00 5.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.217278 GGTTTTACAGTTTTCTTTGGGTTTTAA 57.783 29.630 0.00 0.00 0.00 1.52
32 33 7.823310 GGGTTTTACAGTTTTCTTTGGGTTTTA 59.177 33.333 0.00 0.00 0.00 1.52
33 34 6.655848 GGGTTTTACAGTTTTCTTTGGGTTTT 59.344 34.615 0.00 0.00 0.00 2.43
34 35 6.174760 GGGTTTTACAGTTTTCTTTGGGTTT 58.825 36.000 0.00 0.00 0.00 3.27
35 36 5.248705 TGGGTTTTACAGTTTTCTTTGGGTT 59.751 36.000 0.00 0.00 0.00 4.11
36 37 4.778427 TGGGTTTTACAGTTTTCTTTGGGT 59.222 37.500 0.00 0.00 0.00 4.51
37 38 5.346181 TGGGTTTTACAGTTTTCTTTGGG 57.654 39.130 0.00 0.00 0.00 4.12
38 39 6.578023 TCATGGGTTTTACAGTTTTCTTTGG 58.422 36.000 0.00 0.00 0.00 3.28
39 40 6.701400 CCTCATGGGTTTTACAGTTTTCTTTG 59.299 38.462 0.00 0.00 0.00 2.77
40 41 6.609616 TCCTCATGGGTTTTACAGTTTTCTTT 59.390 34.615 0.00 0.00 36.25 2.52
41 42 6.133356 TCCTCATGGGTTTTACAGTTTTCTT 58.867 36.000 0.00 0.00 36.25 2.52
42 43 5.701224 TCCTCATGGGTTTTACAGTTTTCT 58.299 37.500 0.00 0.00 36.25 2.52
43 44 6.399639 TTCCTCATGGGTTTTACAGTTTTC 57.600 37.500 0.00 0.00 36.25 2.29
44 45 6.578944 GTTTCCTCATGGGTTTTACAGTTTT 58.421 36.000 0.00 0.00 36.25 2.43
45 46 5.221165 CGTTTCCTCATGGGTTTTACAGTTT 60.221 40.000 0.00 0.00 36.25 2.66
46 47 4.277423 CGTTTCCTCATGGGTTTTACAGTT 59.723 41.667 0.00 0.00 36.25 3.16
47 48 3.818773 CGTTTCCTCATGGGTTTTACAGT 59.181 43.478 0.00 0.00 36.25 3.55
48 49 4.069304 TCGTTTCCTCATGGGTTTTACAG 58.931 43.478 0.00 0.00 36.25 2.74
49 50 4.088056 TCGTTTCCTCATGGGTTTTACA 57.912 40.909 0.00 0.00 36.25 2.41
50 51 4.758165 TCTTCGTTTCCTCATGGGTTTTAC 59.242 41.667 0.00 0.00 36.25 2.01
51 52 4.975631 TCTTCGTTTCCTCATGGGTTTTA 58.024 39.130 0.00 0.00 36.25 1.52
52 53 3.827722 TCTTCGTTTCCTCATGGGTTTT 58.172 40.909 0.00 0.00 36.25 2.43
53 54 3.502123 TCTTCGTTTCCTCATGGGTTT 57.498 42.857 0.00 0.00 36.25 3.27
54 55 3.502123 TTCTTCGTTTCCTCATGGGTT 57.498 42.857 0.00 0.00 36.25 4.11
55 56 3.502123 TTTCTTCGTTTCCTCATGGGT 57.498 42.857 0.00 0.00 36.25 4.51
56 57 4.072131 TCTTTTCTTCGTTTCCTCATGGG 58.928 43.478 0.00 0.00 0.00 4.00
57 58 4.083271 GGTCTTTTCTTCGTTTCCTCATGG 60.083 45.833 0.00 0.00 0.00 3.66
58 59 4.083271 GGGTCTTTTCTTCGTTTCCTCATG 60.083 45.833 0.00 0.00 0.00 3.07
59 60 4.072839 GGGTCTTTTCTTCGTTTCCTCAT 58.927 43.478 0.00 0.00 0.00 2.90
60 61 3.473625 GGGTCTTTTCTTCGTTTCCTCA 58.526 45.455 0.00 0.00 0.00 3.86
61 62 2.812591 GGGGTCTTTTCTTCGTTTCCTC 59.187 50.000 0.00 0.00 0.00 3.71
62 63 2.173996 TGGGGTCTTTTCTTCGTTTCCT 59.826 45.455 0.00 0.00 0.00 3.36
63 64 2.578786 TGGGGTCTTTTCTTCGTTTCC 58.421 47.619 0.00 0.00 0.00 3.13
64 65 4.337274 TCTTTGGGGTCTTTTCTTCGTTTC 59.663 41.667 0.00 0.00 0.00 2.78
65 66 4.274978 TCTTTGGGGTCTTTTCTTCGTTT 58.725 39.130 0.00 0.00 0.00 3.60
66 67 3.893521 TCTTTGGGGTCTTTTCTTCGTT 58.106 40.909 0.00 0.00 0.00 3.85
67 68 3.570912 TCTTTGGGGTCTTTTCTTCGT 57.429 42.857 0.00 0.00 0.00 3.85
68 69 4.911514 TTTCTTTGGGGTCTTTTCTTCG 57.088 40.909 0.00 0.00 0.00 3.79
69 70 6.265422 TCAGATTTCTTTGGGGTCTTTTCTTC 59.735 38.462 0.00 0.00 0.00 2.87
70 71 6.136155 TCAGATTTCTTTGGGGTCTTTTCTT 58.864 36.000 0.00 0.00 0.00 2.52
71 72 5.705400 TCAGATTTCTTTGGGGTCTTTTCT 58.295 37.500 0.00 0.00 0.00 2.52
72 73 6.209391 TCATCAGATTTCTTTGGGGTCTTTTC 59.791 38.462 0.00 0.00 0.00 2.29
73 74 6.077322 TCATCAGATTTCTTTGGGGTCTTTT 58.923 36.000 0.00 0.00 0.00 2.27
74 75 5.644188 TCATCAGATTTCTTTGGGGTCTTT 58.356 37.500 0.00 0.00 0.00 2.52
75 76 5.261040 TCATCAGATTTCTTTGGGGTCTT 57.739 39.130 0.00 0.00 0.00 3.01
76 77 4.934797 TCATCAGATTTCTTTGGGGTCT 57.065 40.909 0.00 0.00 0.00 3.85
77 78 5.982890 TTTCATCAGATTTCTTTGGGGTC 57.017 39.130 0.00 0.00 0.00 4.46
78 79 5.840693 AGTTTTCATCAGATTTCTTTGGGGT 59.159 36.000 0.00 0.00 0.00 4.95
79 80 6.350629 AGTTTTCATCAGATTTCTTTGGGG 57.649 37.500 0.00 0.00 0.00 4.96
80 81 8.796475 TCTTAGTTTTCATCAGATTTCTTTGGG 58.204 33.333 0.00 0.00 0.00 4.12
171 172 9.625747 TCCAGCTTTTAATGAATTTTCCTTTTT 57.374 25.926 0.00 0.00 0.00 1.94
172 173 9.625747 TTCCAGCTTTTAATGAATTTTCCTTTT 57.374 25.926 0.00 0.00 0.00 2.27
173 174 9.797642 ATTCCAGCTTTTAATGAATTTTCCTTT 57.202 25.926 0.00 0.00 0.00 3.11
180 181 9.921637 TCGTTTTATTCCAGCTTTTAATGAATT 57.078 25.926 0.00 0.00 0.00 2.17
181 182 9.921637 TTCGTTTTATTCCAGCTTTTAATGAAT 57.078 25.926 0.00 0.00 0.00 2.57
182 183 9.405587 CTTCGTTTTATTCCAGCTTTTAATGAA 57.594 29.630 0.00 0.00 0.00 2.57
183 184 8.788806 TCTTCGTTTTATTCCAGCTTTTAATGA 58.211 29.630 0.00 0.00 0.00 2.57
184 185 8.964420 TCTTCGTTTTATTCCAGCTTTTAATG 57.036 30.769 0.00 0.00 0.00 1.90
185 186 9.974980 TTTCTTCGTTTTATTCCAGCTTTTAAT 57.025 25.926 0.00 0.00 0.00 1.40
186 187 9.804758 TTTTCTTCGTTTTATTCCAGCTTTTAA 57.195 25.926 0.00 0.00 0.00 1.52
187 188 9.974980 ATTTTCTTCGTTTTATTCCAGCTTTTA 57.025 25.926 0.00 0.00 0.00 1.52
188 189 8.887036 ATTTTCTTCGTTTTATTCCAGCTTTT 57.113 26.923 0.00 0.00 0.00 2.27
189 190 8.764287 CAATTTTCTTCGTTTTATTCCAGCTTT 58.236 29.630 0.00 0.00 0.00 3.51
190 191 7.926018 ACAATTTTCTTCGTTTTATTCCAGCTT 59.074 29.630 0.00 0.00 0.00 3.74
191 192 7.382218 CACAATTTTCTTCGTTTTATTCCAGCT 59.618 33.333 0.00 0.00 0.00 4.24
192 193 7.381139 TCACAATTTTCTTCGTTTTATTCCAGC 59.619 33.333 0.00 0.00 0.00 4.85
193 194 8.795786 TCACAATTTTCTTCGTTTTATTCCAG 57.204 30.769 0.00 0.00 0.00 3.86
194 195 9.587772 TTTCACAATTTTCTTCGTTTTATTCCA 57.412 25.926 0.00 0.00 0.00 3.53
219 220 9.438228 TTTTCTTCTTCGGTTATTTTGGTTTTT 57.562 25.926 0.00 0.00 0.00 1.94
220 221 9.438228 TTTTTCTTCTTCGGTTATTTTGGTTTT 57.562 25.926 0.00 0.00 0.00 2.43
221 222 8.875803 GTTTTTCTTCTTCGGTTATTTTGGTTT 58.124 29.630 0.00 0.00 0.00 3.27
222 223 7.493320 GGTTTTTCTTCTTCGGTTATTTTGGTT 59.507 33.333 0.00 0.00 0.00 3.67
223 224 6.982141 GGTTTTTCTTCTTCGGTTATTTTGGT 59.018 34.615 0.00 0.00 0.00 3.67
224 225 6.422701 GGGTTTTTCTTCTTCGGTTATTTTGG 59.577 38.462 0.00 0.00 0.00 3.28
246 247 2.859165 TCTCAATTTCTTCGCTGGGT 57.141 45.000 0.00 0.00 0.00 4.51
260 261 3.924114 TCACTCCAGTGGTTTTCTCAA 57.076 42.857 9.54 0.00 45.65 3.02
265 266 3.885297 CTGTTGATCACTCCAGTGGTTTT 59.115 43.478 9.54 0.00 45.65 2.43
269 270 2.354503 CCTCTGTTGATCACTCCAGTGG 60.355 54.545 16.65 16.65 45.65 4.00
280 281 1.630878 GGTTCCTCCACCTCTGTTGAT 59.369 52.381 0.00 0.00 33.50 2.57
283 284 0.104409 AGGGTTCCTCCACCTCTGTT 60.104 55.000 0.00 0.00 36.97 3.16
285 286 1.557269 CCAGGGTTCCTCCACCTCTG 61.557 65.000 0.00 0.00 36.97 3.35
322 323 0.687427 AGAGAGGAGGGAGCAAGAGC 60.687 60.000 0.00 0.00 42.56 4.09
347 348 3.202829 ACCTTAGTCGGCAAAGTGAAA 57.797 42.857 0.00 0.00 0.00 2.69
351 352 2.140717 CGAAACCTTAGTCGGCAAAGT 58.859 47.619 0.00 0.00 33.62 2.66
357 358 2.228343 AGTGACTCGAAACCTTAGTCGG 59.772 50.000 0.00 0.00 42.05 4.79
358 359 3.555917 AGTGACTCGAAACCTTAGTCG 57.444 47.619 0.00 0.00 42.05 4.18
364 365 0.886563 CCCGTAGTGACTCGAAACCT 59.113 55.000 6.12 0.00 0.00 3.50
374 375 1.001248 CTCCCCTTCCCCGTAGTGA 59.999 63.158 0.00 0.00 0.00 3.41
379 380 4.281074 AACCCTCCCCTTCCCCGT 62.281 66.667 0.00 0.00 0.00 5.28
384 385 0.919289 TCCCATCAACCCTCCCCTTC 60.919 60.000 0.00 0.00 0.00 3.46
385 386 0.479589 TTCCCATCAACCCTCCCCTT 60.480 55.000 0.00 0.00 0.00 3.95
405 407 3.057969 ACGAGTGGATGCATTTGAAGA 57.942 42.857 0.00 0.00 0.00 2.87
417 419 0.800683 CGCGCAATAGAACGAGTGGA 60.801 55.000 8.75 0.00 0.00 4.02
426 428 1.939974 AAGCTCAATCGCGCAATAGA 58.060 45.000 8.75 0.00 34.40 1.98
433 435 4.002267 TGAATTTGTAAGCTCAATCGCG 57.998 40.909 0.00 0.00 34.40 5.87
444 446 6.768861 CGAAGGGGGTACATATGAATTTGTAA 59.231 38.462 10.38 0.00 30.59 2.41
449 451 4.202430 GGACGAAGGGGGTACATATGAATT 60.202 45.833 10.38 0.00 0.00 2.17
462 464 5.627040 GCTCTTATATTATGGGACGAAGGGG 60.627 48.000 0.00 0.00 0.00 4.79
464 466 5.103000 CGCTCTTATATTATGGGACGAAGG 58.897 45.833 0.00 0.00 0.00 3.46
467 469 3.762288 AGCGCTCTTATATTATGGGACGA 59.238 43.478 2.64 0.00 0.00 4.20
469 471 6.426937 TCAAAAGCGCTCTTATATTATGGGAC 59.573 38.462 12.06 0.00 31.02 4.46
476 478 4.630069 ACGTGTCAAAAGCGCTCTTATATT 59.370 37.500 12.06 0.00 31.02 1.28
493 495 1.933853 AGAGTGCTTTTGACACGTGTC 59.066 47.619 36.01 36.01 42.94 3.67
498 500 8.345565 CCCATAATATAAGAGTGCTTTTGACAC 58.654 37.037 0.00 0.00 38.35 3.67
499 501 8.271458 TCCCATAATATAAGAGTGCTTTTGACA 58.729 33.333 0.00 0.00 35.56 3.58
507 518 8.709308 AGTATCCATCCCATAATATAAGAGTGC 58.291 37.037 0.00 0.00 0.00 4.40
521 532 9.442062 TTCATTACTTAAGTAGTATCCATCCCA 57.558 33.333 14.73 0.00 39.07 4.37
559 570 5.075493 AGTGGAAGTTGATGCATCTTTTCT 58.925 37.500 26.32 15.55 0.00 2.52
619 632 8.844244 AGATCAAGATGCATATTTAAGGTCAAC 58.156 33.333 3.24 0.00 0.00 3.18
620 633 8.985315 AGATCAAGATGCATATTTAAGGTCAA 57.015 30.769 3.24 0.00 0.00 3.18
621 634 8.212995 TGAGATCAAGATGCATATTTAAGGTCA 58.787 33.333 3.24 1.80 0.00 4.02
623 636 8.985315 TTGAGATCAAGATGCATATTTAAGGT 57.015 30.769 3.24 0.00 0.00 3.50
681 694 9.874205 TTTTCCTGCAAATTATTATTGGAAGAG 57.126 29.630 0.00 0.00 34.43 2.85
765 778 9.403583 AGAGTTTAGTTGTGACATCCTTAAAAA 57.596 29.630 0.00 0.00 0.00 1.94
766 779 8.974060 AGAGTTTAGTTGTGACATCCTTAAAA 57.026 30.769 0.00 0.00 0.00 1.52
767 780 8.208224 TGAGAGTTTAGTTGTGACATCCTTAAA 58.792 33.333 0.00 0.00 0.00 1.52
768 781 7.656137 GTGAGAGTTTAGTTGTGACATCCTTAA 59.344 37.037 0.00 0.00 0.00 1.85
769 782 7.152645 GTGAGAGTTTAGTTGTGACATCCTTA 58.847 38.462 0.00 0.00 0.00 2.69
770 783 5.992217 GTGAGAGTTTAGTTGTGACATCCTT 59.008 40.000 0.00 0.00 0.00 3.36
771 784 5.542779 GTGAGAGTTTAGTTGTGACATCCT 58.457 41.667 0.00 0.00 0.00 3.24
772 785 4.386049 CGTGAGAGTTTAGTTGTGACATCC 59.614 45.833 0.00 0.00 0.00 3.51
773 786 5.220381 TCGTGAGAGTTTAGTTGTGACATC 58.780 41.667 0.00 0.00 34.84 3.06
774 787 5.196341 TCGTGAGAGTTTAGTTGTGACAT 57.804 39.130 0.00 0.00 34.84 3.06
775 788 4.642445 TCGTGAGAGTTTAGTTGTGACA 57.358 40.909 0.00 0.00 34.84 3.58
776 789 7.499868 GTTATTCGTGAGAGTTTAGTTGTGAC 58.500 38.462 0.00 0.00 43.69 3.67
777 790 6.361481 CGTTATTCGTGAGAGTTTAGTTGTGA 59.639 38.462 0.00 0.00 43.69 3.58
778 791 6.514171 CGTTATTCGTGAGAGTTTAGTTGTG 58.486 40.000 0.00 0.00 43.69 3.33
779 792 5.118203 GCGTTATTCGTGAGAGTTTAGTTGT 59.882 40.000 0.00 0.00 43.69 3.32
780 793 5.118050 TGCGTTATTCGTGAGAGTTTAGTTG 59.882 40.000 0.00 0.00 43.69 3.16
781 794 5.224888 TGCGTTATTCGTGAGAGTTTAGTT 58.775 37.500 0.00 0.00 43.69 2.24
782 795 4.801891 TGCGTTATTCGTGAGAGTTTAGT 58.198 39.130 0.00 0.00 43.69 2.24
783 796 4.259451 GCTGCGTTATTCGTGAGAGTTTAG 60.259 45.833 0.00 0.00 43.69 1.85
784 797 3.611113 GCTGCGTTATTCGTGAGAGTTTA 59.389 43.478 0.00 0.00 43.69 2.01
785 798 2.412089 GCTGCGTTATTCGTGAGAGTTT 59.588 45.455 0.00 0.00 43.69 2.66
786 799 1.993370 GCTGCGTTATTCGTGAGAGTT 59.007 47.619 0.00 0.00 43.69 3.01
787 800 1.067846 TGCTGCGTTATTCGTGAGAGT 60.068 47.619 0.00 0.00 43.69 3.24
788 801 1.629013 TGCTGCGTTATTCGTGAGAG 58.371 50.000 0.00 0.00 43.69 3.20
789 802 1.724623 GTTGCTGCGTTATTCGTGAGA 59.275 47.619 0.00 0.00 42.13 3.27
790 803 1.459209 TGTTGCTGCGTTATTCGTGAG 59.541 47.619 0.00 0.00 42.13 3.51
791 804 1.503294 TGTTGCTGCGTTATTCGTGA 58.497 45.000 0.00 0.00 42.13 4.35
792 805 2.233355 CTTGTTGCTGCGTTATTCGTG 58.767 47.619 0.00 0.00 42.13 4.35
793 806 1.196808 CCTTGTTGCTGCGTTATTCGT 59.803 47.619 0.00 0.00 42.13 3.85
794 807 1.465689 CCCTTGTTGCTGCGTTATTCG 60.466 52.381 0.00 0.00 43.12 3.34
795 808 1.810151 TCCCTTGTTGCTGCGTTATTC 59.190 47.619 0.00 0.00 0.00 1.75
796 809 1.904287 TCCCTTGTTGCTGCGTTATT 58.096 45.000 0.00 0.00 0.00 1.40
797 810 1.904287 TTCCCTTGTTGCTGCGTTAT 58.096 45.000 0.00 0.00 0.00 1.89
798 811 1.681538 TTTCCCTTGTTGCTGCGTTA 58.318 45.000 0.00 0.00 0.00 3.18
799 812 0.820871 TTTTCCCTTGTTGCTGCGTT 59.179 45.000 0.00 0.00 0.00 4.84
800 813 0.820871 TTTTTCCCTTGTTGCTGCGT 59.179 45.000 0.00 0.00 0.00 5.24
801 814 3.657956 TTTTTCCCTTGTTGCTGCG 57.342 47.368 0.00 0.00 0.00 5.18
835 848 5.227152 GCCGAATGTTTGTGGTCTATTTTT 58.773 37.500 0.00 0.00 0.00 1.94
836 849 4.321675 GGCCGAATGTTTGTGGTCTATTTT 60.322 41.667 0.00 0.00 0.00 1.82
837 850 3.192633 GGCCGAATGTTTGTGGTCTATTT 59.807 43.478 0.00 0.00 0.00 1.40
838 851 2.752903 GGCCGAATGTTTGTGGTCTATT 59.247 45.455 0.00 0.00 0.00 1.73
839 852 2.365582 GGCCGAATGTTTGTGGTCTAT 58.634 47.619 0.00 0.00 0.00 1.98
840 853 1.816074 GGCCGAATGTTTGTGGTCTA 58.184 50.000 0.00 0.00 0.00 2.59
841 854 1.234615 CGGCCGAATGTTTGTGGTCT 61.235 55.000 24.07 0.00 0.00 3.85
842 855 1.209127 CGGCCGAATGTTTGTGGTC 59.791 57.895 24.07 0.00 0.00 4.02
843 856 1.228003 TCGGCCGAATGTTTGTGGT 60.228 52.632 28.99 0.00 0.00 4.16
844 857 0.953471 TCTCGGCCGAATGTTTGTGG 60.953 55.000 30.53 14.15 0.00 4.17
845 858 0.165944 GTCTCGGCCGAATGTTTGTG 59.834 55.000 30.53 14.94 0.00 3.33
846 859 0.953960 GGTCTCGGCCGAATGTTTGT 60.954 55.000 30.53 0.00 0.00 2.83
847 860 1.644786 GGGTCTCGGCCGAATGTTTG 61.645 60.000 30.53 16.53 0.00 2.93
848 861 1.376812 GGGTCTCGGCCGAATGTTT 60.377 57.895 30.53 0.00 0.00 2.83
849 862 2.267961 GGGTCTCGGCCGAATGTT 59.732 61.111 30.53 0.00 0.00 2.71
850 863 2.683933 AGGGTCTCGGCCGAATGT 60.684 61.111 30.53 9.34 0.00 2.71
851 864 2.202932 CAGGGTCTCGGCCGAATG 60.203 66.667 30.53 18.96 0.00 2.67
852 865 3.470888 CCAGGGTCTCGGCCGAAT 61.471 66.667 30.53 9.94 0.00 3.34
860 873 1.671379 GCGGTTTGACCAGGGTCTC 60.671 63.158 18.60 9.43 44.80 3.36
891 904 1.117142 TTCGGTTCGACCAGGGTCTT 61.117 55.000 15.95 0.00 42.54 3.01
1411 1439 2.280628 GGTCCAGATGAACCAATCGAC 58.719 52.381 0.00 0.00 0.00 4.20
1420 1448 4.812476 CGCGGCGGTCCAGATGAA 62.812 66.667 15.84 0.00 0.00 2.57
1463 1491 1.086634 GCCTTGGCAGTCGAGATGTC 61.087 60.000 6.79 0.00 0.00 3.06
1541 1569 1.199327 CTGTCACCGATGAGTACACGT 59.801 52.381 0.00 0.00 34.75 4.49
1845 1906 5.200368 ACCACAAACAAAGGCTAGAATTG 57.800 39.130 0.00 0.00 0.00 2.32
1882 1943 1.748122 ATTCTGCAGCCGCTTCTGG 60.748 57.895 9.47 0.00 39.64 3.86
1890 1951 1.610554 ATTGCACCCATTCTGCAGCC 61.611 55.000 9.47 0.00 45.21 4.85
2026 2095 1.550524 TGACTTTAGCTCTGTGGCGAT 59.449 47.619 0.00 0.00 37.29 4.58
2031 2100 1.731720 GCCCTGACTTTAGCTCTGTG 58.268 55.000 0.00 0.00 0.00 3.66
2033 2102 0.532573 TCGCCCTGACTTTAGCTCTG 59.467 55.000 0.00 0.00 0.00 3.35
2073 2142 2.377073 AGGACGCTAAAGTACTCTCCC 58.623 52.381 0.00 0.00 26.31 4.30
2147 2220 3.976793 ATGCAAGACAACAGTCAACAG 57.023 42.857 0.00 0.00 34.69 3.16
2148 2221 4.717233 AAATGCAAGACAACAGTCAACA 57.283 36.364 0.00 0.00 34.69 3.33
2149 2222 5.101628 TGAAAATGCAAGACAACAGTCAAC 58.898 37.500 0.00 0.00 34.69 3.18
2150 2223 5.321959 TGAAAATGCAAGACAACAGTCAA 57.678 34.783 0.00 0.00 34.69 3.18
2151 2224 4.979943 TGAAAATGCAAGACAACAGTCA 57.020 36.364 0.00 0.00 34.69 3.41
2152 2225 6.917477 TGTAATGAAAATGCAAGACAACAGTC 59.083 34.615 0.00 0.00 0.00 3.51
2153 2226 6.804677 TGTAATGAAAATGCAAGACAACAGT 58.195 32.000 0.00 0.00 0.00 3.55
2262 2357 1.016627 TTCGCAAGCTCCATATGTGC 58.983 50.000 1.24 5.94 37.18 4.57
2279 2374 1.806542 TGGCGCAGAGAATTGTCTTTC 59.193 47.619 10.83 0.00 32.80 2.62
2295 2392 6.204688 TGCCATATATTAAGTTTTCTCTGGCG 59.795 38.462 0.00 0.00 46.45 5.69
2298 2399 8.562892 CCAGTGCCATATATTAAGTTTTCTCTG 58.437 37.037 0.00 0.00 0.00 3.35
2385 2491 4.973396 ACATGTTTGTGTGCATATTCGAG 58.027 39.130 0.00 0.00 33.85 4.04
2470 2598 6.769512 AGTTTGAGATGTAACCTTCAGCTAA 58.230 36.000 0.00 0.00 31.55 3.09
2482 2611 6.656632 ACAAGACTGAGAGTTTGAGATGTA 57.343 37.500 0.00 0.00 0.00 2.29
2533 2669 2.158623 TCAGCATTCCACTTTGGTGAGT 60.159 45.455 1.06 0.00 43.30 3.41
2585 2721 8.354426 TGACAATGTGCCATGATCTAAAATATG 58.646 33.333 0.00 0.00 0.00 1.78
2610 2746 7.970384 TGTTTAGTTAATCCTTGTTAGCGATG 58.030 34.615 0.00 0.00 0.00 3.84
2642 2791 2.300437 AGCTCGGAAAGAAACTAGCAGT 59.700 45.455 0.00 0.00 32.42 4.40
2648 2797 2.300437 AGTAGCAGCTCGGAAAGAAACT 59.700 45.455 0.00 0.00 0.00 2.66
2842 2991 5.463061 CACAAAAATTGTTCCAAGTAGCTGG 59.537 40.000 0.00 0.00 43.23 4.85
2859 3009 8.071368 GGAAACGACATAGATTACACACAAAAA 58.929 33.333 0.00 0.00 0.00 1.94
2860 3010 7.308109 GGGAAACGACATAGATTACACACAAAA 60.308 37.037 0.00 0.00 0.00 2.44
2861 3011 6.148150 GGGAAACGACATAGATTACACACAAA 59.852 38.462 0.00 0.00 0.00 2.83
2864 3015 5.416947 AGGGAAACGACATAGATTACACAC 58.583 41.667 0.00 0.00 0.00 3.82
3034 3188 3.452264 TCCCACACCTGTCAGAATCTATG 59.548 47.826 0.00 0.00 0.00 2.23
3077 3314 5.470098 TGACATCAGTTTCCAAGTTTCTAGC 59.530 40.000 0.00 0.00 0.00 3.42
3081 3318 4.022849 CCCTGACATCAGTTTCCAAGTTTC 60.023 45.833 8.06 0.00 42.27 2.78
3253 3505 5.698832 TGCTTTCAACTATTTGACCAATCG 58.301 37.500 0.00 0.00 41.64 3.34
3300 3554 7.934120 AGGTTGACTACATATTTAGCAATCTCC 59.066 37.037 10.51 7.44 28.61 3.71
3369 3721 6.481954 AAGTAACTTGAAGCATCTTAACGG 57.518 37.500 0.00 0.00 0.00 4.44
3381 3733 3.315191 GCTGTGCCAGAAAGTAACTTGAA 59.685 43.478 6.40 0.00 32.44 2.69
3416 3770 6.319658 CCAAAGGTTATAAGACTGCATGTGAT 59.680 38.462 0.00 0.00 0.00 3.06
3460 3814 7.828717 TCTCAGAACTTATAATTTGATGTGCCA 59.171 33.333 0.00 0.00 0.00 4.92
3603 3961 5.665916 AAGATGATGGGTTTGTCCATTTC 57.334 39.130 0.00 0.00 46.67 2.17
3715 4085 0.603707 ACAACCACGGCTGATCACAG 60.604 55.000 0.00 0.00 45.91 3.66
3779 4150 3.217681 AGAAACCGGCTTTAGAAACCA 57.782 42.857 0.00 0.00 0.00 3.67
3780 4151 3.317149 ACAAGAAACCGGCTTTAGAAACC 59.683 43.478 0.00 0.00 0.00 3.27
3786 4157 3.202829 ACAGACAAGAAACCGGCTTTA 57.797 42.857 0.00 0.00 0.00 1.85
3787 4158 2.052782 ACAGACAAGAAACCGGCTTT 57.947 45.000 0.00 0.76 0.00 3.51
3791 4162 2.811431 TGCATAACAGACAAGAAACCGG 59.189 45.455 0.00 0.00 0.00 5.28
3848 4252 2.163818 ATTCGACACGACAACCACAT 57.836 45.000 0.00 0.00 34.89 3.21
3882 4287 0.930742 GAGATACAGTTCGCGCTCGG 60.931 60.000 5.56 0.00 36.13 4.63
3923 4330 7.425606 AGCAATTTAACCAAACAGTAACAGAG 58.574 34.615 0.00 0.00 0.00 3.35
3945 4352 1.029947 TCATGTAGCCGACTCGAGCA 61.030 55.000 13.61 0.08 0.00 4.26
3970 4377 2.490991 GCGTAGGACCCACATAATTCC 58.509 52.381 0.00 0.00 0.00 3.01
3999 4406 9.165014 CGAACGACAATATTTCTTTCAGAAAAA 57.835 29.630 3.13 0.00 46.08 1.94
4025 4433 4.594136 CTTTACAAGACACGGAAAACACC 58.406 43.478 0.00 0.00 0.00 4.16
4035 4443 1.201921 CGATGCCGCTTTACAAGACAC 60.202 52.381 0.00 0.00 0.00 3.67
4043 4451 1.864711 GTGCTAATCGATGCCGCTTTA 59.135 47.619 0.00 0.00 35.37 1.85
4047 4455 1.154205 ACAGTGCTAATCGATGCCGC 61.154 55.000 0.00 2.62 35.37 6.53
4049 4457 3.717707 TCTTACAGTGCTAATCGATGCC 58.282 45.455 0.00 0.00 0.00 4.40
4050 4458 4.363999 ACTCTTACAGTGCTAATCGATGC 58.636 43.478 0.00 0.00 32.26 3.91
4057 4465 5.069914 TGTCCAGAAACTCTTACAGTGCTAA 59.930 40.000 0.00 0.00 34.56 3.09
4059 4467 3.388024 TGTCCAGAAACTCTTACAGTGCT 59.612 43.478 0.00 0.00 34.56 4.40
4063 4471 5.235186 CAGTTGTGTCCAGAAACTCTTACAG 59.765 44.000 0.00 0.00 31.88 2.74
4103 4519 4.706527 CAATTCAGACTCGAGCAGAAAAC 58.293 43.478 13.61 0.00 0.00 2.43
4104 4520 3.187227 GCAATTCAGACTCGAGCAGAAAA 59.813 43.478 13.61 1.22 0.00 2.29
4105 4521 2.738846 GCAATTCAGACTCGAGCAGAAA 59.261 45.455 13.61 2.75 0.00 2.52
4108 4524 1.718396 TGCAATTCAGACTCGAGCAG 58.282 50.000 13.61 2.38 0.00 4.24
4110 4526 3.806521 ACATATGCAATTCAGACTCGAGC 59.193 43.478 13.61 5.49 0.00 5.03
4111 4527 7.508134 CAATACATATGCAATTCAGACTCGAG 58.492 38.462 11.84 11.84 0.00 4.04
4132 4551 2.840038 TGAAGAGGGAGCAAGAGCAATA 59.160 45.455 0.00 0.00 45.49 1.90
4140 4559 3.828451 CCAAAAGAATGAAGAGGGAGCAA 59.172 43.478 0.00 0.00 0.00 3.91
4141 4560 3.074390 TCCAAAAGAATGAAGAGGGAGCA 59.926 43.478 0.00 0.00 0.00 4.26
4142 4561 3.690460 TCCAAAAGAATGAAGAGGGAGC 58.310 45.455 0.00 0.00 0.00 4.70
4143 4562 7.394359 TGTTTATCCAAAAGAATGAAGAGGGAG 59.606 37.037 0.00 0.00 0.00 4.30
4144 4563 7.237982 TGTTTATCCAAAAGAATGAAGAGGGA 58.762 34.615 0.00 0.00 0.00 4.20
4145 4564 7.177392 ACTGTTTATCCAAAAGAATGAAGAGGG 59.823 37.037 0.00 0.00 0.00 4.30
4157 4576 7.595819 ATTCTGAACCACTGTTTATCCAAAA 57.404 32.000 0.00 0.00 33.97 2.44
4175 4594 5.448438 GCAACACATTTCAACGTATTCTGA 58.552 37.500 0.00 0.00 0.00 3.27
4182 4601 0.030101 CCCGCAACACATTTCAACGT 59.970 50.000 0.00 0.00 0.00 3.99
4184 4603 2.217429 AACCCGCAACACATTTCAAC 57.783 45.000 0.00 0.00 0.00 3.18
4198 4617 3.304525 GGTCGTCTGATCAGTATAACCCG 60.305 52.174 21.92 13.00 0.00 5.28
4227 4646 2.840176 CGTTTGAAAAATCATCGGAGCG 59.160 45.455 0.00 0.00 0.00 5.03
4229 4648 4.651994 CTCCGTTTGAAAAATCATCGGAG 58.348 43.478 24.11 24.11 46.45 4.63
4231 4650 4.419522 ACTCCGTTTGAAAAATCATCGG 57.580 40.909 13.11 13.11 38.14 4.18
4251 4670 5.945191 ACTGACTCCCTAGTGAACTAGTAAC 59.055 44.000 14.75 0.00 43.34 2.50
4255 4674 4.590918 TGACTGACTCCCTAGTGAACTAG 58.409 47.826 10.05 10.05 44.22 2.57
4268 4687 2.222678 CACAGCAACACATGACTGACTC 59.777 50.000 0.00 0.00 36.94 3.36
4302 4721 2.579873 AGCGGATCATTAGCAAGCATT 58.420 42.857 0.00 0.00 0.00 3.56
4366 4785 7.231115 TCTGTTTCAGAATTCAAATCCATCACA 59.769 33.333 8.44 1.78 37.57 3.58
4368 4787 7.764141 TCTGTTTCAGAATTCAAATCCATCA 57.236 32.000 8.44 0.00 37.57 3.07
4409 4828 1.218763 CATCTCTTCGCTGATGCAGG 58.781 55.000 0.00 0.00 39.64 4.85
4418 4837 3.373439 AGATCAGTTTTGCATCTCTTCGC 59.627 43.478 0.00 0.00 0.00 4.70
4433 4852 3.434739 GCATGGATTCCTTGGAGATCAGT 60.435 47.826 17.61 0.00 0.00 3.41
4441 4860 1.227102 TCCGGCATGGATTCCTTGG 59.773 57.895 17.61 6.77 43.74 3.61
4480 4899 3.367498 CGTAAGAAGCTGGAGTACAAGCT 60.367 47.826 10.86 10.86 43.02 3.74
4483 4902 2.353406 GCCGTAAGAAGCTGGAGTACAA 60.353 50.000 0.00 0.00 43.02 2.41
4515 4934 3.521796 GCCCGGCCATCTTCTTGC 61.522 66.667 2.24 0.00 0.00 4.01
4550 4969 2.109425 AGCGTTGATGTAGGGGAAAC 57.891 50.000 0.00 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.