Multiple sequence alignment - TraesCS6A01G313600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G313600 chr6A 100.000 4840 0 0 1 4840 550278954 550283793 0.000000e+00 8938.0
1 TraesCS6A01G313600 chr6A 95.833 48 2 0 4349 4396 550283203 550283250 1.440000e-10 78.7
2 TraesCS6A01G313600 chr6A 95.833 48 2 0 4250 4297 550283302 550283349 1.440000e-10 78.7
3 TraesCS6A01G313600 chr6B 92.948 1645 75 20 2459 4086 605551112 605552732 0.000000e+00 2357.0
4 TraesCS6A01G313600 chr6B 92.237 1636 96 16 855 2461 605549370 605551003 0.000000e+00 2289.0
5 TraesCS6A01G313600 chr6B 94.407 447 18 3 4399 4838 605553047 605553493 0.000000e+00 680.0
6 TraesCS6A01G313600 chr6B 90.643 342 31 1 42 383 685268020 685268360 2.050000e-123 453.0
7 TraesCS6A01G313600 chr6B 90.045 221 22 0 4090 4310 605552798 605553018 2.200000e-73 287.0
8 TraesCS6A01G313600 chr6D 90.711 1787 83 39 2463 4218 403796945 403798679 0.000000e+00 2303.0
9 TraesCS6A01G313600 chr6D 89.907 1714 111 27 784 2461 403795149 403796836 0.000000e+00 2150.0
10 TraesCS6A01G313600 chr6D 94.508 437 20 2 4408 4840 403802599 403803035 0.000000e+00 671.0
11 TraesCS6A01G313600 chr6D 90.058 342 34 0 41 382 433137492 433137151 1.240000e-120 444.0
12 TraesCS6A01G313600 chr6D 84.962 266 26 4 383 646 403794645 403794898 1.730000e-64 257.0
13 TraesCS6A01G313600 chr6D 93.519 108 7 0 652 759 403794942 403795049 1.390000e-35 161.0
14 TraesCS6A01G313600 chr5A 88.861 395 31 2 1 383 48564439 48564832 1.580000e-129 473.0
15 TraesCS6A01G313600 chr5A 83.014 418 35 12 1 383 352625787 352626203 3.590000e-91 346.0
16 TraesCS6A01G313600 chr4B 88.861 395 28 3 1 383 293524483 293524873 5.670000e-129 472.0
17 TraesCS6A01G313600 chr7A 88.579 394 32 2 1 382 575730155 575730547 2.640000e-127 466.0
18 TraesCS6A01G313600 chr7A 83.455 411 38 9 1 382 550780052 550780461 5.960000e-94 355.0
19 TraesCS6A01G313600 chr7A 82.968 411 40 9 1 382 550898779 550899188 1.290000e-90 344.0
20 TraesCS6A01G313600 chr7A 82.238 411 43 13 1 382 62222891 62223300 1.300000e-85 327.0
21 TraesCS6A01G313600 chr3B 91.228 342 29 1 41 382 639178711 639179051 9.490000e-127 464.0
22 TraesCS6A01G313600 chr3B 90.725 345 29 3 41 384 801405514 801405172 1.590000e-124 457.0
23 TraesCS6A01G313600 chr5B 88.101 395 31 4 1 383 121956644 121957034 5.710000e-124 455.0
24 TraesCS6A01G313600 chr4A 88.071 394 34 2 1 382 21125490 21125882 5.710000e-124 455.0
25 TraesCS6A01G313600 chr4A 83.212 411 40 6 1 382 513781925 513782335 2.770000e-92 350.0
26 TraesCS6A01G313600 chr4A 80.976 410 47 9 1 381 155288968 155289375 3.660000e-76 296.0
27 TraesCS6A01G313600 chr5D 83.575 414 40 11 1 388 516404325 516404736 3.560000e-96 363.0
28 TraesCS6A01G313600 chr3A 82.809 413 39 11 1 383 103788250 103787840 1.670000e-89 340.0
29 TraesCS6A01G313600 chr3A 81.796 412 45 9 1 383 589445371 589444961 7.820000e-83 318.0
30 TraesCS6A01G313600 chr2D 100.000 32 0 0 848 879 487056260 487056291 5.230000e-05 60.2
31 TraesCS6A01G313600 chr2A 100.000 32 0 0 848 879 632292914 632292945 5.230000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G313600 chr6A 550278954 550283793 4839 False 3031.80 8938 97.22200 1 4840 3 chr6A.!!$F1 4839
1 TraesCS6A01G313600 chr6B 605549370 605553493 4123 False 1403.25 2357 92.40925 855 4838 4 chr6B.!!$F2 3983
2 TraesCS6A01G313600 chr6D 403794645 403803035 8390 False 1108.40 2303 90.72140 383 4840 5 chr6D.!!$F1 4457

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
152 153 0.036875 AGTGAAGCCTAACCTGCCAC 59.963 55.000 0.00 0.00 0.00 5.01 F
673 714 0.171231 CTCGTCATCAAGCTCGACCA 59.829 55.000 0.00 0.00 0.00 4.02 F
1319 1460 0.390472 GGACGAACTGAAGGCCTCTG 60.390 60.000 5.23 6.63 0.00 3.35 F
2430 2592 1.202065 CGGCACATGTACATCTTGCAC 60.202 52.381 28.14 20.08 34.76 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1327 1468 0.105658 CAAGATCCTCCCCCGACCTA 60.106 60.000 0.0 0.0 0.00 3.08 R
1954 2104 0.524816 CCACCACTCGGTTATCGTCG 60.525 60.000 0.0 0.0 46.31 5.12 R
2497 2770 1.949525 CCATATACCTGCACCACAAGC 59.050 52.381 0.0 0.0 0.00 4.01 R
4346 7707 0.032615 AACCAGAGGTGCCAAAACCA 60.033 50.000 0.0 0.0 43.20 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.779241 TTAGTTGACATTCAATCCCCTCT 57.221 39.130 0.00 0.00 38.79 3.69
26 27 3.960571 AGTTGACATTCAATCCCCTCTG 58.039 45.455 0.00 0.00 38.79 3.35
27 28 3.331889 AGTTGACATTCAATCCCCTCTGT 59.668 43.478 0.00 0.00 38.79 3.41
28 29 4.536090 AGTTGACATTCAATCCCCTCTGTA 59.464 41.667 0.00 0.00 38.79 2.74
29 30 5.014123 AGTTGACATTCAATCCCCTCTGTAA 59.986 40.000 0.00 0.00 38.79 2.41
30 31 4.843728 TGACATTCAATCCCCTCTGTAAC 58.156 43.478 0.00 0.00 0.00 2.50
31 32 4.288366 TGACATTCAATCCCCTCTGTAACA 59.712 41.667 0.00 0.00 0.00 2.41
32 33 5.044919 TGACATTCAATCCCCTCTGTAACAT 60.045 40.000 0.00 0.00 0.00 2.71
33 34 6.157820 TGACATTCAATCCCCTCTGTAACATA 59.842 38.462 0.00 0.00 0.00 2.29
34 35 6.357367 ACATTCAATCCCCTCTGTAACATAC 58.643 40.000 0.00 0.00 0.00 2.39
35 36 6.158695 ACATTCAATCCCCTCTGTAACATACT 59.841 38.462 0.00 0.00 0.00 2.12
36 37 6.636454 TTCAATCCCCTCTGTAACATACTT 57.364 37.500 0.00 0.00 0.00 2.24
37 38 6.235231 TCAATCCCCTCTGTAACATACTTC 57.765 41.667 0.00 0.00 0.00 3.01
38 39 5.724370 TCAATCCCCTCTGTAACATACTTCA 59.276 40.000 0.00 0.00 0.00 3.02
39 40 6.214615 TCAATCCCCTCTGTAACATACTTCAA 59.785 38.462 0.00 0.00 0.00 2.69
40 41 6.831664 ATCCCCTCTGTAACATACTTCAAT 57.168 37.500 0.00 0.00 0.00 2.57
41 42 7.931015 ATCCCCTCTGTAACATACTTCAATA 57.069 36.000 0.00 0.00 0.00 1.90
42 43 7.931015 TCCCCTCTGTAACATACTTCAATAT 57.069 36.000 0.00 0.00 0.00 1.28
43 44 8.331931 TCCCCTCTGTAACATACTTCAATATT 57.668 34.615 0.00 0.00 0.00 1.28
44 45 8.778059 TCCCCTCTGTAACATACTTCAATATTT 58.222 33.333 0.00 0.00 0.00 1.40
45 46 9.408648 CCCCTCTGTAACATACTTCAATATTTT 57.591 33.333 0.00 0.00 0.00 1.82
68 69 9.496873 TTTTTATCTCCTTGTTAAATGACTCGA 57.503 29.630 0.00 0.00 0.00 4.04
69 70 8.475331 TTTATCTCCTTGTTAAATGACTCGAC 57.525 34.615 0.00 0.00 0.00 4.20
70 71 5.462530 TCTCCTTGTTAAATGACTCGACA 57.537 39.130 0.00 0.00 0.00 4.35
71 72 6.037786 TCTCCTTGTTAAATGACTCGACAT 57.962 37.500 0.00 0.00 0.00 3.06
72 73 6.464222 TCTCCTTGTTAAATGACTCGACATT 58.536 36.000 0.00 0.00 41.43 2.71
73 74 6.590292 TCTCCTTGTTAAATGACTCGACATTC 59.410 38.462 2.11 0.00 39.19 2.67
74 75 6.464222 TCCTTGTTAAATGACTCGACATTCT 58.536 36.000 2.11 0.00 39.19 2.40
75 76 6.590292 TCCTTGTTAAATGACTCGACATTCTC 59.410 38.462 2.11 0.00 39.19 2.87
76 77 6.368791 CCTTGTTAAATGACTCGACATTCTCA 59.631 38.462 2.11 0.95 39.19 3.27
77 78 7.065085 CCTTGTTAAATGACTCGACATTCTCAT 59.935 37.037 2.11 0.00 39.19 2.90
78 79 7.525688 TGTTAAATGACTCGACATTCTCATC 57.474 36.000 2.11 0.00 39.19 2.92
79 80 7.323420 TGTTAAATGACTCGACATTCTCATCT 58.677 34.615 2.11 0.00 39.19 2.90
80 81 7.276438 TGTTAAATGACTCGACATTCTCATCTG 59.724 37.037 2.11 0.00 39.19 2.90
81 82 4.998671 ATGACTCGACATTCTCATCTGT 57.001 40.909 0.00 0.00 0.00 3.41
82 83 4.790765 TGACTCGACATTCTCATCTGTT 57.209 40.909 0.00 0.00 0.00 3.16
83 84 5.897377 TGACTCGACATTCTCATCTGTTA 57.103 39.130 0.00 0.00 0.00 2.41
84 85 5.884771 TGACTCGACATTCTCATCTGTTAG 58.115 41.667 0.00 0.00 0.00 2.34
85 86 5.648092 TGACTCGACATTCTCATCTGTTAGA 59.352 40.000 0.00 0.00 0.00 2.10
86 87 6.151144 TGACTCGACATTCTCATCTGTTAGAA 59.849 38.462 0.00 0.00 36.24 2.10
87 88 6.925211 ACTCGACATTCTCATCTGTTAGAAA 58.075 36.000 0.00 0.00 35.47 2.52
88 89 7.378966 ACTCGACATTCTCATCTGTTAGAAAA 58.621 34.615 0.00 0.00 35.47 2.29
89 90 7.872993 ACTCGACATTCTCATCTGTTAGAAAAA 59.127 33.333 0.00 0.00 35.47 1.94
90 91 8.777865 TCGACATTCTCATCTGTTAGAAAAAT 57.222 30.769 0.00 0.00 35.47 1.82
91 92 9.869757 TCGACATTCTCATCTGTTAGAAAAATA 57.130 29.630 0.00 0.00 35.47 1.40
92 93 9.907576 CGACATTCTCATCTGTTAGAAAAATAC 57.092 33.333 0.00 0.00 35.47 1.89
116 117 7.556844 ACTACATGATCTTAGGTTGTTAGTGG 58.443 38.462 0.00 0.00 0.00 4.00
117 118 6.620877 ACATGATCTTAGGTTGTTAGTGGA 57.379 37.500 0.00 0.00 0.00 4.02
118 119 6.407202 ACATGATCTTAGGTTGTTAGTGGAC 58.593 40.000 0.00 0.00 0.00 4.02
119 120 5.068234 TGATCTTAGGTTGTTAGTGGACG 57.932 43.478 0.00 0.00 0.00 4.79
120 121 4.525487 TGATCTTAGGTTGTTAGTGGACGT 59.475 41.667 0.00 0.00 0.00 4.34
121 122 4.942761 TCTTAGGTTGTTAGTGGACGTT 57.057 40.909 0.00 0.00 0.00 3.99
122 123 4.624015 TCTTAGGTTGTTAGTGGACGTTG 58.376 43.478 0.00 0.00 0.00 4.10
123 124 4.341806 TCTTAGGTTGTTAGTGGACGTTGA 59.658 41.667 0.00 0.00 0.00 3.18
124 125 3.764237 AGGTTGTTAGTGGACGTTGAT 57.236 42.857 0.00 0.00 0.00 2.57
125 126 4.081322 AGGTTGTTAGTGGACGTTGATT 57.919 40.909 0.00 0.00 0.00 2.57
126 127 4.457466 AGGTTGTTAGTGGACGTTGATTT 58.543 39.130 0.00 0.00 0.00 2.17
127 128 5.613329 AGGTTGTTAGTGGACGTTGATTTA 58.387 37.500 0.00 0.00 0.00 1.40
128 129 5.467735 AGGTTGTTAGTGGACGTTGATTTAC 59.532 40.000 0.00 0.00 0.00 2.01
129 130 5.334337 GGTTGTTAGTGGACGTTGATTTACC 60.334 44.000 0.00 0.00 0.00 2.85
130 131 4.958509 TGTTAGTGGACGTTGATTTACCA 58.041 39.130 0.00 0.00 0.00 3.25
131 132 5.366460 TGTTAGTGGACGTTGATTTACCAA 58.634 37.500 0.00 0.00 32.32 3.67
132 133 5.821470 TGTTAGTGGACGTTGATTTACCAAA 59.179 36.000 0.00 0.00 32.32 3.28
133 134 6.318144 TGTTAGTGGACGTTGATTTACCAAAA 59.682 34.615 0.00 0.00 32.32 2.44
134 135 5.432885 AGTGGACGTTGATTTACCAAAAG 57.567 39.130 0.00 0.00 32.32 2.27
135 136 4.885325 AGTGGACGTTGATTTACCAAAAGT 59.115 37.500 0.00 0.00 32.32 2.66
136 137 4.973663 GTGGACGTTGATTTACCAAAAGTG 59.026 41.667 0.00 0.00 32.32 3.16
137 138 4.882427 TGGACGTTGATTTACCAAAAGTGA 59.118 37.500 0.00 0.00 0.00 3.41
138 139 5.357314 TGGACGTTGATTTACCAAAAGTGAA 59.643 36.000 0.00 0.00 0.00 3.18
139 140 5.912955 GGACGTTGATTTACCAAAAGTGAAG 59.087 40.000 0.00 0.00 0.00 3.02
140 141 5.278604 ACGTTGATTTACCAAAAGTGAAGC 58.721 37.500 0.00 0.00 31.42 3.86
141 142 4.679654 CGTTGATTTACCAAAAGTGAAGCC 59.320 41.667 0.00 0.00 29.76 4.35
142 143 5.507315 CGTTGATTTACCAAAAGTGAAGCCT 60.507 40.000 0.00 0.00 29.76 4.58
143 144 6.293735 CGTTGATTTACCAAAAGTGAAGCCTA 60.294 38.462 0.00 0.00 29.76 3.93
144 145 7.430441 GTTGATTTACCAAAAGTGAAGCCTAA 58.570 34.615 0.00 0.00 29.76 2.69
145 146 6.977213 TGATTTACCAAAAGTGAAGCCTAAC 58.023 36.000 0.00 0.00 29.76 2.34
146 147 5.777850 TTTACCAAAAGTGAAGCCTAACC 57.222 39.130 0.00 0.00 0.00 2.85
147 148 3.595190 ACCAAAAGTGAAGCCTAACCT 57.405 42.857 0.00 0.00 0.00 3.50
148 149 3.222603 ACCAAAAGTGAAGCCTAACCTG 58.777 45.455 0.00 0.00 0.00 4.00
149 150 2.029918 CCAAAAGTGAAGCCTAACCTGC 60.030 50.000 0.00 0.00 0.00 4.85
150 151 1.911057 AAAGTGAAGCCTAACCTGCC 58.089 50.000 0.00 0.00 0.00 4.85
151 152 0.771127 AAGTGAAGCCTAACCTGCCA 59.229 50.000 0.00 0.00 0.00 4.92
152 153 0.036875 AGTGAAGCCTAACCTGCCAC 59.963 55.000 0.00 0.00 0.00 5.01
153 154 0.250727 GTGAAGCCTAACCTGCCACA 60.251 55.000 0.00 0.00 0.00 4.17
154 155 0.476338 TGAAGCCTAACCTGCCACAA 59.524 50.000 0.00 0.00 0.00 3.33
155 156 1.168714 GAAGCCTAACCTGCCACAAG 58.831 55.000 0.00 0.00 0.00 3.16
156 157 0.251341 AAGCCTAACCTGCCACAAGG 60.251 55.000 0.00 0.00 43.57 3.61
167 168 3.248043 CCACAAGGCGAAGAATGGA 57.752 52.632 0.00 0.00 0.00 3.41
168 169 1.533625 CCACAAGGCGAAGAATGGAA 58.466 50.000 0.00 0.00 0.00 3.53
169 170 1.470098 CCACAAGGCGAAGAATGGAAG 59.530 52.381 0.00 0.00 0.00 3.46
170 171 2.426522 CACAAGGCGAAGAATGGAAGA 58.573 47.619 0.00 0.00 0.00 2.87
171 172 2.417933 CACAAGGCGAAGAATGGAAGAG 59.582 50.000 0.00 0.00 0.00 2.85
172 173 2.039084 ACAAGGCGAAGAATGGAAGAGT 59.961 45.455 0.00 0.00 0.00 3.24
173 174 3.077359 CAAGGCGAAGAATGGAAGAGTT 58.923 45.455 0.00 0.00 0.00 3.01
174 175 3.425162 AGGCGAAGAATGGAAGAGTTT 57.575 42.857 0.00 0.00 0.00 2.66
175 176 4.553330 AGGCGAAGAATGGAAGAGTTTA 57.447 40.909 0.00 0.00 0.00 2.01
176 177 5.104259 AGGCGAAGAATGGAAGAGTTTAT 57.896 39.130 0.00 0.00 0.00 1.40
177 178 4.878397 AGGCGAAGAATGGAAGAGTTTATG 59.122 41.667 0.00 0.00 0.00 1.90
178 179 4.636206 GGCGAAGAATGGAAGAGTTTATGT 59.364 41.667 0.00 0.00 0.00 2.29
179 180 5.123979 GGCGAAGAATGGAAGAGTTTATGTT 59.876 40.000 0.00 0.00 0.00 2.71
180 181 6.315393 GGCGAAGAATGGAAGAGTTTATGTTA 59.685 38.462 0.00 0.00 0.00 2.41
181 182 7.148306 GGCGAAGAATGGAAGAGTTTATGTTAA 60.148 37.037 0.00 0.00 0.00 2.01
182 183 7.692705 GCGAAGAATGGAAGAGTTTATGTTAAC 59.307 37.037 0.00 0.00 0.00 2.01
183 184 8.717821 CGAAGAATGGAAGAGTTTATGTTAACA 58.282 33.333 11.41 11.41 0.00 2.41
188 189 9.912634 AATGGAAGAGTTTATGTTAACATTGTG 57.087 29.630 25.31 0.00 37.76 3.33
189 190 8.458573 TGGAAGAGTTTATGTTAACATTGTGT 57.541 30.769 25.31 9.28 37.76 3.72
190 191 8.908903 TGGAAGAGTTTATGTTAACATTGTGTT 58.091 29.630 25.31 12.31 43.88 3.32
194 195 9.840427 AGAGTTTATGTTAACATTGTGTTATGC 57.160 29.630 25.31 7.60 41.83 3.14
195 196 8.980143 AGTTTATGTTAACATTGTGTTATGCC 57.020 30.769 25.31 3.87 41.83 4.40
196 197 8.802267 AGTTTATGTTAACATTGTGTTATGCCT 58.198 29.630 25.31 0.69 41.83 4.75
197 198 9.418045 GTTTATGTTAACATTGTGTTATGCCTT 57.582 29.630 25.31 0.25 41.83 4.35
211 212 9.203421 TGTGTTATGCCTTATTTATATGTCTCG 57.797 33.333 0.00 0.00 0.00 4.04
212 213 9.419297 GTGTTATGCCTTATTTATATGTCTCGA 57.581 33.333 0.00 0.00 0.00 4.04
213 214 9.639601 TGTTATGCCTTATTTATATGTCTCGAG 57.360 33.333 5.93 5.93 0.00 4.04
214 215 9.856488 GTTATGCCTTATTTATATGTCTCGAGA 57.144 33.333 12.08 12.08 0.00 4.04
216 217 6.925211 TGCCTTATTTATATGTCTCGAGAGG 58.075 40.000 17.22 9.88 0.00 3.69
217 218 6.719829 TGCCTTATTTATATGTCTCGAGAGGA 59.280 38.462 17.22 5.90 0.00 3.71
218 219 7.030768 GCCTTATTTATATGTCTCGAGAGGAC 58.969 42.308 17.22 5.80 33.64 3.85
219 220 7.540299 CCTTATTTATATGTCTCGAGAGGACC 58.460 42.308 17.22 4.43 32.54 4.46
220 221 5.986501 ATTTATATGTCTCGAGAGGACCC 57.013 43.478 17.22 4.01 32.54 4.46
221 222 1.898902 ATATGTCTCGAGAGGACCCG 58.101 55.000 17.22 0.00 32.54 5.28
222 223 0.835276 TATGTCTCGAGAGGACCCGA 59.165 55.000 17.22 0.00 32.54 5.14
223 224 0.183971 ATGTCTCGAGAGGACCCGAT 59.816 55.000 17.22 0.00 34.08 4.18
224 225 0.748367 TGTCTCGAGAGGACCCGATG 60.748 60.000 17.22 0.00 34.08 3.84
225 226 1.152943 TCTCGAGAGGACCCGATGG 60.153 63.158 12.08 0.00 34.08 3.51
226 227 1.152943 CTCGAGAGGACCCGATGGA 60.153 63.158 6.58 0.00 34.08 3.41
227 228 0.538516 CTCGAGAGGACCCGATGGAT 60.539 60.000 6.58 0.00 34.08 3.41
228 229 0.769247 TCGAGAGGACCCGATGGATA 59.231 55.000 0.00 0.00 34.81 2.59
229 230 1.354705 TCGAGAGGACCCGATGGATAT 59.645 52.381 0.00 0.00 34.81 1.63
230 231 1.746220 CGAGAGGACCCGATGGATATC 59.254 57.143 0.00 0.00 34.81 1.63
231 232 2.104170 GAGAGGACCCGATGGATATCC 58.896 57.143 15.39 15.39 34.81 2.59
249 250 3.646867 TCCAGTGGGTATGGATATCCA 57.353 47.619 26.49 26.49 41.96 3.41
262 263 5.339423 TGGATATCCATCAGGTCTAGACA 57.661 43.478 20.98 4.49 42.01 3.41
263 264 5.908590 TGGATATCCATCAGGTCTAGACAT 58.091 41.667 20.98 15.12 42.01 3.06
264 265 5.718607 TGGATATCCATCAGGTCTAGACATG 59.281 44.000 27.48 27.48 42.01 3.21
265 266 5.128499 GGATATCCATCAGGTCTAGACATGG 59.872 48.000 31.03 27.69 38.55 3.66
266 267 3.688049 TCCATCAGGTCTAGACATGGA 57.312 47.619 31.03 29.12 42.72 3.41
267 268 3.570540 TCCATCAGGTCTAGACATGGAG 58.429 50.000 31.03 23.65 42.72 3.86
268 269 3.205282 TCCATCAGGTCTAGACATGGAGA 59.795 47.826 31.03 22.82 42.72 3.71
269 270 4.140829 TCCATCAGGTCTAGACATGGAGAT 60.141 45.833 31.03 18.10 42.72 2.75
270 271 5.075067 TCCATCAGGTCTAGACATGGAGATA 59.925 44.000 31.03 16.10 42.72 1.98
271 272 5.418524 CCATCAGGTCTAGACATGGAGATAG 59.581 48.000 31.03 16.85 42.72 2.08
272 273 5.654901 TCAGGTCTAGACATGGAGATAGT 57.345 43.478 31.03 0.00 42.72 2.12
273 274 6.019656 TCAGGTCTAGACATGGAGATAGTT 57.980 41.667 31.03 0.00 42.72 2.24
274 275 6.436027 TCAGGTCTAGACATGGAGATAGTTT 58.564 40.000 31.03 0.00 42.72 2.66
275 276 6.897966 TCAGGTCTAGACATGGAGATAGTTTT 59.102 38.462 31.03 0.00 42.72 2.43
276 277 8.059461 TCAGGTCTAGACATGGAGATAGTTTTA 58.941 37.037 31.03 9.78 42.72 1.52
277 278 8.138712 CAGGTCTAGACATGGAGATAGTTTTAC 58.861 40.741 26.11 3.11 39.22 2.01
278 279 7.839705 AGGTCTAGACATGGAGATAGTTTTACA 59.160 37.037 23.91 0.00 0.00 2.41
279 280 7.921745 GGTCTAGACATGGAGATAGTTTTACAC 59.078 40.741 23.91 0.00 0.00 2.90
280 281 7.921745 GTCTAGACATGGAGATAGTTTTACACC 59.078 40.741 18.20 0.00 0.00 4.16
281 282 5.990668 AGACATGGAGATAGTTTTACACCC 58.009 41.667 0.00 0.00 0.00 4.61
282 283 4.766375 ACATGGAGATAGTTTTACACCCG 58.234 43.478 0.00 0.00 0.00 5.28
283 284 4.224370 ACATGGAGATAGTTTTACACCCGT 59.776 41.667 0.00 0.00 0.00 5.28
284 285 4.196626 TGGAGATAGTTTTACACCCGTG 57.803 45.455 0.00 0.00 0.00 4.94
285 286 3.055675 TGGAGATAGTTTTACACCCGTGG 60.056 47.826 0.00 0.00 34.19 4.94
286 287 3.196254 GGAGATAGTTTTACACCCGTGGA 59.804 47.826 0.00 0.00 34.19 4.02
287 288 4.141779 GGAGATAGTTTTACACCCGTGGAT 60.142 45.833 0.00 0.00 34.19 3.41
288 289 5.425630 GAGATAGTTTTACACCCGTGGATT 58.574 41.667 0.00 0.00 34.19 3.01
289 290 5.812286 AGATAGTTTTACACCCGTGGATTT 58.188 37.500 0.00 0.00 34.19 2.17
290 291 6.243148 AGATAGTTTTACACCCGTGGATTTT 58.757 36.000 0.00 0.00 34.19 1.82
291 292 6.717997 AGATAGTTTTACACCCGTGGATTTTT 59.282 34.615 0.00 0.00 34.19 1.94
308 309 2.810439 TTTTTCATGGACGGGCAAAG 57.190 45.000 0.00 0.00 0.00 2.77
309 310 1.988293 TTTTCATGGACGGGCAAAGA 58.012 45.000 0.00 0.00 0.00 2.52
310 311 1.243902 TTTCATGGACGGGCAAAGAC 58.756 50.000 0.00 0.00 0.00 3.01
311 312 0.608035 TTCATGGACGGGCAAAGACC 60.608 55.000 0.00 0.00 0.00 3.85
318 319 4.792087 GGGCAAAGACCGTCTTCA 57.208 55.556 14.18 0.00 35.27 3.02
319 320 3.249687 GGGCAAAGACCGTCTTCAT 57.750 52.632 14.18 0.00 35.27 2.57
320 321 0.804989 GGGCAAAGACCGTCTTCATG 59.195 55.000 14.18 10.79 35.27 3.07
321 322 0.804989 GGCAAAGACCGTCTTCATGG 59.195 55.000 14.18 6.14 35.27 3.66
322 323 1.610624 GGCAAAGACCGTCTTCATGGA 60.611 52.381 14.18 0.00 35.27 3.41
323 324 2.359900 GCAAAGACCGTCTTCATGGAT 58.640 47.619 14.18 0.00 35.27 3.41
324 325 3.531538 GCAAAGACCGTCTTCATGGATA 58.468 45.455 14.18 0.00 35.27 2.59
325 326 4.130118 GCAAAGACCGTCTTCATGGATAT 58.870 43.478 14.18 0.00 35.27 1.63
326 327 4.024556 GCAAAGACCGTCTTCATGGATATG 60.025 45.833 14.18 7.46 35.27 1.78
327 328 4.342862 AAGACCGTCTTCATGGATATGG 57.657 45.455 8.03 0.00 28.99 2.74
328 329 3.576861 AGACCGTCTTCATGGATATGGA 58.423 45.455 4.65 0.00 34.97 3.41
329 330 4.163427 AGACCGTCTTCATGGATATGGAT 58.837 43.478 4.65 0.00 34.97 3.41
330 331 5.333581 AGACCGTCTTCATGGATATGGATA 58.666 41.667 4.65 0.00 34.97 2.59
331 332 5.960811 AGACCGTCTTCATGGATATGGATAT 59.039 40.000 4.65 0.00 34.97 1.63
332 333 5.982356 ACCGTCTTCATGGATATGGATATG 58.018 41.667 4.65 0.00 34.97 1.78
333 334 5.104776 ACCGTCTTCATGGATATGGATATGG 60.105 44.000 4.65 0.00 34.97 2.74
334 335 5.129320 CCGTCTTCATGGATATGGATATGGA 59.871 44.000 0.00 0.00 34.97 3.41
335 336 6.183361 CCGTCTTCATGGATATGGATATGGAT 60.183 42.308 0.00 0.00 34.97 3.41
336 337 7.278135 CGTCTTCATGGATATGGATATGGATT 58.722 38.462 0.00 0.00 34.97 3.01
337 338 7.772292 CGTCTTCATGGATATGGATATGGATTT 59.228 37.037 0.00 0.00 34.97 2.17
338 339 9.471702 GTCTTCATGGATATGGATATGGATTTT 57.528 33.333 0.00 0.00 34.97 1.82
357 358 8.482128 TGGATTTTATATTGTTCAACCCAATCC 58.518 33.333 0.00 0.00 37.52 3.01
358 359 8.482128 GGATTTTATATTGTTCAACCCAATCCA 58.518 33.333 0.00 0.00 37.14 3.41
359 360 9.883142 GATTTTATATTGTTCAACCCAATCCAA 57.117 29.630 0.00 0.00 34.51 3.53
361 362 9.495572 TTTTATATTGTTCAACCCAATCCAAAC 57.504 29.630 0.00 0.00 34.51 2.93
362 363 3.828875 TTGTTCAACCCAATCCAAACC 57.171 42.857 0.00 0.00 0.00 3.27
363 364 2.043227 TGTTCAACCCAATCCAAACCC 58.957 47.619 0.00 0.00 0.00 4.11
364 365 1.000394 GTTCAACCCAATCCAAACCCG 60.000 52.381 0.00 0.00 0.00 5.28
365 366 0.478942 TCAACCCAATCCAAACCCGA 59.521 50.000 0.00 0.00 0.00 5.14
366 367 0.887933 CAACCCAATCCAAACCCGAG 59.112 55.000 0.00 0.00 0.00 4.63
367 368 0.898326 AACCCAATCCAAACCCGAGC 60.898 55.000 0.00 0.00 0.00 5.03
368 369 2.052104 CCCAATCCAAACCCGAGCC 61.052 63.158 0.00 0.00 0.00 4.70
369 370 1.304052 CCAATCCAAACCCGAGCCA 60.304 57.895 0.00 0.00 0.00 4.75
370 371 0.897863 CCAATCCAAACCCGAGCCAA 60.898 55.000 0.00 0.00 0.00 4.52
371 372 1.185315 CAATCCAAACCCGAGCCAAT 58.815 50.000 0.00 0.00 0.00 3.16
372 373 1.135024 CAATCCAAACCCGAGCCAATG 60.135 52.381 0.00 0.00 0.00 2.82
373 374 1.322538 ATCCAAACCCGAGCCAATGC 61.323 55.000 0.00 0.00 37.95 3.56
374 375 2.573340 CAAACCCGAGCCAATGCC 59.427 61.111 0.00 0.00 38.69 4.40
375 376 2.117206 AAACCCGAGCCAATGCCA 59.883 55.556 0.00 0.00 38.69 4.92
376 377 1.305213 AAACCCGAGCCAATGCCAT 60.305 52.632 0.00 0.00 38.69 4.40
377 378 1.322538 AAACCCGAGCCAATGCCATC 61.323 55.000 0.00 0.00 38.69 3.51
378 379 2.908940 CCCGAGCCAATGCCATCC 60.909 66.667 0.00 0.00 38.69 3.51
379 380 2.194056 CCGAGCCAATGCCATCCT 59.806 61.111 0.00 0.00 38.69 3.24
380 381 1.454479 CCGAGCCAATGCCATCCTT 60.454 57.895 0.00 0.00 38.69 3.36
381 382 0.179020 CCGAGCCAATGCCATCCTTA 60.179 55.000 0.00 0.00 38.69 2.69
415 416 1.666888 CCCAGATGCAAAACGACAAGC 60.667 52.381 0.00 0.00 0.00 4.01
419 420 3.091022 GCAAAACGACAAGCCGCG 61.091 61.111 0.00 0.00 0.00 6.46
442 443 0.249280 CACCCCAACCGCTTTGAAAC 60.249 55.000 0.00 0.00 37.39 2.78
457 459 1.544151 AAACTTCCCCTCCCCTCCC 60.544 63.158 0.00 0.00 0.00 4.30
459 461 3.711782 CTTCCCCTCCCCTCCCCT 61.712 72.222 0.00 0.00 0.00 4.79
475 477 1.108132 CCCTACTGGACGCCTACCTC 61.108 65.000 0.00 0.00 35.39 3.85
481 483 2.638154 GACGCCTACCTCGATCCG 59.362 66.667 0.00 0.00 0.00 4.18
483 485 3.288290 CGCCTACCTCGATCCGCT 61.288 66.667 0.00 0.00 0.00 5.52
486 488 2.196925 CCTACCTCGATCCGCTGCT 61.197 63.158 0.00 0.00 0.00 4.24
565 568 3.195661 CCGCCTAACACCTCTAAATCAC 58.804 50.000 0.00 0.00 0.00 3.06
614 617 2.568090 CCGCGCCATTTGAAGCTT 59.432 55.556 0.00 0.00 0.00 3.74
617 620 2.096442 GCGCCATTTGAAGCTTGCC 61.096 57.895 2.10 0.00 0.00 4.52
638 641 4.749310 CGCCTTGCTGCTCGTCCT 62.749 66.667 0.00 0.00 0.00 3.85
646 649 1.515952 CTGCTCGTCCTCAAGCTCG 60.516 63.158 0.00 0.00 39.31 5.03
647 650 1.927608 CTGCTCGTCCTCAAGCTCGA 61.928 60.000 0.00 0.00 39.31 4.04
648 651 1.515304 GCTCGTCCTCAAGCTCGAC 60.515 63.158 0.00 0.00 35.60 4.20
649 652 1.137825 CTCGTCCTCAAGCTCGACC 59.862 63.158 0.00 0.00 0.00 4.79
670 711 1.226407 CGCTCGTCATCAAGCTCGA 60.226 57.895 0.00 0.00 36.35 4.04
673 714 0.171231 CTCGTCATCAAGCTCGACCA 59.829 55.000 0.00 0.00 0.00 4.02
698 739 2.091112 CACTGCGTCCTCAAGCTCG 61.091 63.158 0.00 0.00 0.00 5.03
759 800 5.088739 GCCGAACAAGTTTTACATCATCTG 58.911 41.667 0.00 0.00 0.00 2.90
763 874 6.578545 CGAACAAGTTTTACATCATCTGTTGG 59.421 38.462 0.00 0.00 39.39 3.77
764 875 7.519809 CGAACAAGTTTTACATCATCTGTTGGA 60.520 37.037 0.00 0.00 39.39 3.53
816 932 9.555727 TTATGCAACACCTACTTTTATATCTCC 57.444 33.333 0.00 0.00 0.00 3.71
817 933 6.953101 TGCAACACCTACTTTTATATCTCCA 58.047 36.000 0.00 0.00 0.00 3.86
818 934 7.398829 TGCAACACCTACTTTTATATCTCCAA 58.601 34.615 0.00 0.00 0.00 3.53
944 1067 1.067974 GAAACGGAAACCCACCAAAGG 59.932 52.381 0.00 0.00 0.00 3.11
1149 1290 3.709633 GGTACCCACGGACCCACC 61.710 72.222 0.00 0.00 0.00 4.61
1318 1459 0.832135 TGGACGAACTGAAGGCCTCT 60.832 55.000 5.23 0.00 0.00 3.69
1319 1460 0.390472 GGACGAACTGAAGGCCTCTG 60.390 60.000 5.23 6.63 0.00 3.35
1476 1617 2.189521 CGCTTCGGCTGGGGTTAT 59.810 61.111 0.00 0.00 39.13 1.89
1591 1732 7.827236 AGGATGTTCTATTGATTTTACGTTCCA 59.173 33.333 0.00 0.00 0.00 3.53
1629 1775 9.983024 TGTGAGGGTTTTAATTTTCTCCATATA 57.017 29.630 0.00 0.00 0.00 0.86
1666 1816 4.813161 CAGATCAGCATTATCTGGTCGTTT 59.187 41.667 12.65 0.00 46.18 3.60
1789 1939 6.538263 AGCCCTGGAAAATTCAGATATACTC 58.462 40.000 0.00 0.00 34.36 2.59
1808 1958 3.070446 ACTCGATGGTGGTTTTAGTGTCA 59.930 43.478 0.00 0.00 0.00 3.58
1814 1964 2.228822 GGTGGTTTTAGTGTCATGGCAG 59.771 50.000 0.00 0.00 0.00 4.85
1867 2017 2.678336 CGCCTTTATGGACTTGAAGGTC 59.322 50.000 0.00 0.00 40.57 3.85
1870 2020 4.770795 CCTTTATGGACTTGAAGGTCGAT 58.229 43.478 0.00 0.00 38.07 3.59
1954 2104 2.228138 TACGTGTTCTGTTGACACCC 57.772 50.000 0.00 0.00 0.00 4.61
2249 2407 5.990386 ACTGCAATCTAGCATGATGTAGAAG 59.010 40.000 0.00 0.00 44.68 2.85
2253 2411 7.439356 TGCAATCTAGCATGATGTAGAAGTAAC 59.561 37.037 0.00 0.00 40.11 2.50
2258 2416 3.001330 GCATGATGTAGAAGTAACGGTGC 59.999 47.826 0.00 0.00 0.00 5.01
2261 2419 3.006003 TGATGTAGAAGTAACGGTGCACA 59.994 43.478 20.43 0.00 0.00 4.57
2283 2442 8.119226 GCACATCTGAATGTAGTTAGATTTCAC 58.881 37.037 0.00 0.00 44.41 3.18
2291 2450 5.670485 TGTAGTTAGATTTCACATCCGCAT 58.330 37.500 0.00 0.00 0.00 4.73
2319 2478 9.683069 AAAATATTGACATGAACTTCTTGTGAC 57.317 29.630 13.55 3.27 35.29 3.67
2320 2479 8.627208 AATATTGACATGAACTTCTTGTGACT 57.373 30.769 13.55 4.33 35.29 3.41
2403 2565 7.111247 TGTTTTGAACATTCTGGTTTCTCAT 57.889 32.000 0.00 0.00 36.25 2.90
2430 2592 1.202065 CGGCACATGTACATCTTGCAC 60.202 52.381 28.14 20.08 34.76 4.57
2461 2623 8.339714 GCTTGTAAGTTGACACTGTAATTTACA 58.660 33.333 8.86 8.86 37.27 2.41
2497 2770 6.183360 GGATCCAAAGAGATGAAATTGACAGG 60.183 42.308 6.95 0.00 0.00 4.00
2504 2777 3.508793 AGATGAAATTGACAGGCTTGTGG 59.491 43.478 6.05 0.00 37.76 4.17
2524 2797 5.186198 GTGGTGCAGGTATATGGATATTCC 58.814 45.833 0.00 0.00 36.96 3.01
2599 2872 1.201647 CAAGTTGCTCCATCCAGCTTG 59.798 52.381 4.13 4.13 42.30 4.01
2724 2997 3.011949 TCAACTTTCAATTTCCGCAGC 57.988 42.857 0.00 0.00 0.00 5.25
2807 3088 7.013655 CCAATAGAATAATTGCAGGCAACTAGT 59.986 37.037 9.13 1.57 39.35 2.57
2960 3246 8.000709 TCATTTACCCTGAATGCTTATGAGAAT 58.999 33.333 0.00 0.00 35.10 2.40
3194 3481 9.567776 TTTTGTATGAGAACAATCCTACTTTGA 57.432 29.630 0.00 0.00 39.04 2.69
3302 3589 4.694339 ACAAGTTCTTGAAGTTAGCGTCT 58.306 39.130 17.75 0.00 0.00 4.18
3342 3629 6.266103 CCCGTCAGTAATACAGGAGGTAATAA 59.734 42.308 0.00 0.00 35.14 1.40
3343 3630 7.144000 CCGTCAGTAATACAGGAGGTAATAAC 58.856 42.308 0.00 0.00 35.14 1.89
3358 3645 5.581605 GGTAATAACCACAGATGTGCAATG 58.418 41.667 7.46 0.00 45.98 2.82
3369 3656 4.096532 CAGATGTGCAATGCTGAAGAATCT 59.903 41.667 6.82 3.34 0.00 2.40
3377 3664 6.481313 TGCAATGCTGAAGAATCTGTATACTC 59.519 38.462 6.82 0.00 31.40 2.59
3387 3674 8.663209 AAGAATCTGTATACTCTATGAGCCAT 57.337 34.615 4.17 0.00 32.04 4.40
3406 3693 4.819630 GCCATTTCCATATCCTGTAACGAA 59.180 41.667 0.00 0.00 0.00 3.85
3464 3751 1.732259 CTTACATTGCGGTCACCAGAC 59.268 52.381 0.00 0.00 44.21 3.51
3494 3781 2.336809 GCAGTCGCGCTAGGCTAT 59.663 61.111 5.56 0.00 40.44 2.97
3606 3893 4.204012 CAGAAACCCTGAAAACAGGTACA 58.796 43.478 13.97 0.00 45.78 2.90
3616 3903 6.710744 CCTGAAAACAGGTACAATGTAGAAGT 59.289 38.462 7.96 0.00 37.57 3.01
3623 3910 6.211584 ACAGGTACAATGTAGAAGTCACATCT 59.788 38.462 0.00 0.00 35.58 2.90
3637 3924 5.197451 AGTCACATCTCTCCGAAATCTACT 58.803 41.667 0.00 0.00 0.00 2.57
3666 3953 4.837860 AGCTGGTTTTTATTCCCAATGTGA 59.162 37.500 0.00 0.00 0.00 3.58
3680 3967 3.379057 CCAATGTGATGTGCTCATGCTTA 59.621 43.478 5.89 0.00 40.48 3.09
3696 3986 7.065085 GCTCATGCTTATACTTTCTTCTCAACA 59.935 37.037 0.00 0.00 36.03 3.33
3712 4002 5.010933 TCTCAACACTTGTTTTTACCACCA 58.989 37.500 0.00 0.00 35.83 4.17
3728 4018 0.687354 ACCACAGGACGATCTTGCTT 59.313 50.000 0.00 0.00 0.00 3.91
3737 4027 2.000447 ACGATCTTGCTTAACGAAGGC 59.000 47.619 0.00 0.00 32.84 4.35
3804 4094 4.790962 CTGCCGCCACAGATGCCT 62.791 66.667 0.00 0.00 40.25 4.75
3879 4170 2.286772 CGTGTGTAAAGTTTGCCTGTCC 60.287 50.000 0.00 0.00 0.00 4.02
3888 4179 0.036388 TTTGCCTGTCCGAGGATGTC 60.036 55.000 0.00 0.00 46.33 3.06
3891 4182 0.460987 GCCTGTCCGAGGATGTCTTG 60.461 60.000 0.00 0.00 46.33 3.02
4056 4362 1.656652 AATATCGTGACCTGCTGCAC 58.343 50.000 0.00 0.00 0.00 4.57
4067 4373 0.389037 CTGCTGCACGAACTAGCTCA 60.389 55.000 0.00 0.00 38.25 4.26
4086 4392 4.189539 AAAAATCGCCACCTGCCA 57.810 50.000 0.00 0.00 36.24 4.92
4087 4393 2.669878 AAAAATCGCCACCTGCCAT 58.330 47.368 0.00 0.00 36.24 4.40
4088 4394 0.247185 AAAAATCGCCACCTGCCATG 59.753 50.000 0.00 0.00 36.24 3.66
4117 4485 3.325425 TGTACTCCATCCGGTTCTTGAAA 59.675 43.478 0.00 0.00 0.00 2.69
4118 4486 3.502123 ACTCCATCCGGTTCTTGAAAA 57.498 42.857 0.00 0.00 0.00 2.29
4120 4488 2.749621 CTCCATCCGGTTCTTGAAAAGG 59.250 50.000 0.00 0.00 46.24 3.11
4127 4495 2.293122 CGGTTCTTGAAAAGGTGATGCA 59.707 45.455 0.00 0.00 46.24 3.96
4161 4529 6.071616 GGGCATAACTAACTTGTTTGGATTGA 60.072 38.462 0.00 0.00 0.00 2.57
4183 4551 7.979444 TGAGTACTTTCTTGTTTAGATTGGG 57.021 36.000 0.00 0.00 31.54 4.12
4194 4562 9.010029 TCTTGTTTAGATTGGGTACTTCAAATC 57.990 33.333 6.35 4.89 0.00 2.17
4224 7585 5.278463 GCATAGATTTACGACAATGGCCAAT 60.278 40.000 10.96 0.00 0.00 3.16
4229 7590 7.781056 AGATTTACGACAATGGCCAATTATTT 58.219 30.769 10.96 0.00 0.00 1.40
4235 7596 6.601613 ACGACAATGGCCAATTATTTTCTAGA 59.398 34.615 10.96 0.00 0.00 2.43
4236 7597 7.122055 ACGACAATGGCCAATTATTTTCTAGAA 59.878 33.333 10.96 0.00 0.00 2.10
4250 7611 9.667107 TTATTTTCTAGAATGAATCCTGAACGT 57.333 29.630 5.89 0.00 0.00 3.99
4255 7616 4.641396 AGAATGAATCCTGAACGTTGTGA 58.359 39.130 5.00 0.00 0.00 3.58
4276 7637 2.104111 ACACCTCTGGTTGTCGAATTCA 59.896 45.455 6.22 0.00 31.02 2.57
4282 7643 3.940852 TCTGGTTGTCGAATTCATCATGG 59.059 43.478 6.22 0.00 0.00 3.66
4299 7660 5.296151 TCATGGGTCATTCCTATCTGAAC 57.704 43.478 0.00 0.00 35.12 3.18
4310 7671 7.287696 TCATTCCTATCTGAACTATGCAGTGTA 59.712 37.037 0.00 0.00 34.36 2.90
4311 7672 6.641169 TCCTATCTGAACTATGCAGTGTAG 57.359 41.667 0.00 0.00 34.36 2.74
4312 7673 6.365520 TCCTATCTGAACTATGCAGTGTAGA 58.634 40.000 0.00 0.00 34.36 2.59
4314 7675 8.164070 TCCTATCTGAACTATGCAGTGTAGATA 58.836 37.037 0.00 6.90 38.36 1.98
4315 7676 8.458052 CCTATCTGAACTATGCAGTGTAGATAG 58.542 40.741 20.84 20.84 45.32 2.08
4316 7677 6.078202 TCTGAACTATGCAGTGTAGATAGC 57.922 41.667 0.00 0.00 34.36 2.97
4318 7679 5.836347 TGAACTATGCAGTGTAGATAGCTG 58.164 41.667 0.00 0.00 34.36 4.24
4319 7680 5.360999 TGAACTATGCAGTGTAGATAGCTGT 59.639 40.000 0.00 0.00 34.36 4.40
4321 7682 2.851805 TGCAGTGTAGATAGCTGTCG 57.148 50.000 4.68 0.00 33.18 4.35
4326 7687 4.099120 CAGTGTAGATAGCTGTCGTCAAC 58.901 47.826 4.68 3.15 0.00 3.18
4328 7689 4.217767 AGTGTAGATAGCTGTCGTCAACAA 59.782 41.667 4.68 0.00 37.45 2.83
4330 7691 5.004821 GTGTAGATAGCTGTCGTCAACAATG 59.995 44.000 4.68 0.00 37.45 2.82
4332 7693 4.177026 AGATAGCTGTCGTCAACAATGTC 58.823 43.478 4.68 0.00 37.45 3.06
4333 7694 2.238942 AGCTGTCGTCAACAATGTCA 57.761 45.000 0.00 0.00 37.45 3.58
4334 7695 2.560504 AGCTGTCGTCAACAATGTCAA 58.439 42.857 0.00 0.00 37.45 3.18
4338 7699 2.031560 TGTCGTCAACAATGTCAAGTGC 59.968 45.455 0.00 0.00 34.03 4.40
4339 7700 2.031560 GTCGTCAACAATGTCAAGTGCA 59.968 45.455 0.00 0.00 0.00 4.57
4341 7702 3.127721 TCGTCAACAATGTCAAGTGCAAA 59.872 39.130 0.00 0.00 0.00 3.68
4344 7705 4.209703 GTCAACAATGTCAAGTGCAAATGG 59.790 41.667 0.00 0.00 0.00 3.16
4345 7706 3.389925 ACAATGTCAAGTGCAAATGGG 57.610 42.857 0.00 0.00 0.00 4.00
4346 7707 2.699846 ACAATGTCAAGTGCAAATGGGT 59.300 40.909 0.00 0.00 0.00 4.51
4348 7709 1.039068 TGTCAAGTGCAAATGGGTGG 58.961 50.000 0.00 0.00 0.00 4.61
4349 7710 1.039856 GTCAAGTGCAAATGGGTGGT 58.960 50.000 0.00 0.00 0.00 4.16
4350 7711 1.412343 GTCAAGTGCAAATGGGTGGTT 59.588 47.619 0.00 0.00 0.00 3.67
4351 7712 2.114616 TCAAGTGCAAATGGGTGGTTT 58.885 42.857 0.00 0.00 0.00 3.27
4352 7713 2.503356 TCAAGTGCAAATGGGTGGTTTT 59.497 40.909 0.00 0.00 0.00 2.43
4354 7715 1.140652 AGTGCAAATGGGTGGTTTTGG 59.859 47.619 0.00 0.00 34.22 3.28
4356 7717 0.179034 GCAAATGGGTGGTTTTGGCA 60.179 50.000 0.00 0.00 34.22 4.92
4357 7718 1.592064 CAAATGGGTGGTTTTGGCAC 58.408 50.000 0.00 0.00 30.85 5.01
4358 7719 0.472044 AAATGGGTGGTTTTGGCACC 59.528 50.000 0.00 0.00 38.22 5.01
4359 7720 0.399806 AATGGGTGGTTTTGGCACCT 60.400 50.000 0.00 0.00 38.91 4.00
4360 7721 0.831711 ATGGGTGGTTTTGGCACCTC 60.832 55.000 0.00 0.00 38.91 3.85
4361 7722 1.152546 GGGTGGTTTTGGCACCTCT 60.153 57.895 0.00 0.00 38.91 3.69
4362 7723 1.463553 GGGTGGTTTTGGCACCTCTG 61.464 60.000 0.00 0.00 38.91 3.35
4363 7724 1.463553 GGTGGTTTTGGCACCTCTGG 61.464 60.000 0.00 0.00 37.75 3.86
4364 7725 0.755327 GTGGTTTTGGCACCTCTGGT 60.755 55.000 0.00 0.00 37.75 4.00
4365 7726 0.032615 TGGTTTTGGCACCTCTGGTT 60.033 50.000 0.00 0.00 37.75 3.67
4366 7727 0.389025 GGTTTTGGCACCTCTGGTTG 59.611 55.000 0.00 0.00 31.02 3.77
4367 7728 1.111277 GTTTTGGCACCTCTGGTTGT 58.889 50.000 0.00 0.00 31.02 3.32
4368 7729 1.067060 GTTTTGGCACCTCTGGTTGTC 59.933 52.381 0.00 0.00 31.02 3.18
4369 7730 0.817634 TTTGGCACCTCTGGTTGTCG 60.818 55.000 0.00 0.00 31.02 4.35
4370 7731 1.691195 TTGGCACCTCTGGTTGTCGA 61.691 55.000 0.00 0.00 31.02 4.20
4371 7732 1.070786 GGCACCTCTGGTTGTCGAA 59.929 57.895 0.00 0.00 31.02 3.71
4372 7733 0.321653 GGCACCTCTGGTTGTCGAAT 60.322 55.000 0.00 0.00 31.02 3.34
4373 7734 1.523758 GCACCTCTGGTTGTCGAATT 58.476 50.000 0.00 0.00 31.02 2.17
4374 7735 1.464997 GCACCTCTGGTTGTCGAATTC 59.535 52.381 0.00 0.00 31.02 2.17
4375 7736 2.766313 CACCTCTGGTTGTCGAATTCA 58.234 47.619 6.22 0.00 31.02 2.57
4376 7737 3.338249 CACCTCTGGTTGTCGAATTCAT 58.662 45.455 6.22 0.00 31.02 2.57
4377 7738 3.372206 CACCTCTGGTTGTCGAATTCATC 59.628 47.826 6.22 0.00 31.02 2.92
4378 7739 3.007940 ACCTCTGGTTGTCGAATTCATCA 59.992 43.478 6.22 0.92 27.29 3.07
4379 7740 4.194640 CCTCTGGTTGTCGAATTCATCAT 58.805 43.478 6.22 0.00 0.00 2.45
4380 7741 4.034858 CCTCTGGTTGTCGAATTCATCATG 59.965 45.833 6.22 0.00 0.00 3.07
4381 7742 3.940852 TCTGGTTGTCGAATTCATCATGG 59.059 43.478 6.22 0.00 0.00 3.66
4382 7743 3.016031 TGGTTGTCGAATTCATCATGGG 58.984 45.455 6.22 0.00 0.00 4.00
4383 7744 3.016736 GGTTGTCGAATTCATCATGGGT 58.983 45.455 6.22 0.00 0.00 4.51
4384 7745 3.065371 GGTTGTCGAATTCATCATGGGTC 59.935 47.826 6.22 0.00 0.00 4.46
4385 7746 3.625649 TGTCGAATTCATCATGGGTCA 57.374 42.857 6.22 0.00 0.00 4.02
4386 7747 4.155063 TGTCGAATTCATCATGGGTCAT 57.845 40.909 6.22 0.00 0.00 3.06
4387 7748 4.525996 TGTCGAATTCATCATGGGTCATT 58.474 39.130 6.22 0.00 0.00 2.57
4388 7749 4.576053 TGTCGAATTCATCATGGGTCATTC 59.424 41.667 6.22 0.00 0.00 2.67
4389 7750 4.023707 GTCGAATTCATCATGGGTCATTCC 60.024 45.833 6.22 0.00 0.00 3.01
4390 7751 4.139786 CGAATTCATCATGGGTCATTCCT 58.860 43.478 6.22 0.00 36.25 3.36
4391 7752 5.071653 TCGAATTCATCATGGGTCATTCCTA 59.928 40.000 6.22 0.00 36.25 2.94
4392 7753 5.942236 CGAATTCATCATGGGTCATTCCTAT 59.058 40.000 6.22 0.00 37.93 2.57
4393 7754 6.093219 CGAATTCATCATGGGTCATTCCTATC 59.907 42.308 6.22 0.00 35.12 2.08
4394 7755 6.715350 ATTCATCATGGGTCATTCCTATCT 57.285 37.500 0.00 0.00 35.12 1.98
4397 7758 2.981784 TCATGGGTCATTCCTATCTGGG 59.018 50.000 0.00 0.00 35.12 4.45
4421 8558 0.827368 TTCAACTGGGTGGTTTTGGC 59.173 50.000 0.00 0.00 0.00 4.52
4428 8565 0.470268 GGGTGGTTTTGGCAGGGTTA 60.470 55.000 0.00 0.00 0.00 2.85
4466 8603 1.544724 TGGGCCAAGTGCAAAGATAC 58.455 50.000 2.13 0.00 43.89 2.24
4472 8609 3.836949 CCAAGTGCAAAGATACGCAAAT 58.163 40.909 0.00 0.00 40.44 2.32
4568 8712 5.895928 TGTCGAGATATCCAAGAGTTCAAG 58.104 41.667 0.00 0.00 0.00 3.02
4569 8713 5.419155 TGTCGAGATATCCAAGAGTTCAAGT 59.581 40.000 0.00 0.00 0.00 3.16
4570 8714 5.974751 GTCGAGATATCCAAGAGTTCAAGTC 59.025 44.000 0.00 0.00 0.00 3.01
4571 8715 5.652452 TCGAGATATCCAAGAGTTCAAGTCA 59.348 40.000 0.00 0.00 0.00 3.41
4573 8717 6.983307 CGAGATATCCAAGAGTTCAAGTCAAT 59.017 38.462 0.00 0.00 0.00 2.57
4578 8723 7.587037 ATCCAAGAGTTCAAGTCAATGAAAA 57.413 32.000 0.00 0.00 40.76 2.29
4711 8856 9.941664 CCATCAGTATAACTGCAAAGAATAAAG 57.058 33.333 2.12 0.00 45.54 1.85
4725 8870 8.006027 GCAAAGAATAAAGCATCAAGTCAAAAC 58.994 33.333 0.00 0.00 0.00 2.43
4776 8921 9.989869 GAAATAATTGCAGTAGGTTCTAAGAAC 57.010 33.333 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.775093 CAGAGGGGATTGAATGTCAACTAATAA 59.225 37.037 0.00 0.00 39.45 1.40
1 2 7.092444 ACAGAGGGGATTGAATGTCAACTAATA 60.092 37.037 0.00 0.00 39.45 0.98
2 3 6.125029 CAGAGGGGATTGAATGTCAACTAAT 58.875 40.000 0.00 0.00 39.45 1.73
3 4 5.014123 ACAGAGGGGATTGAATGTCAACTAA 59.986 40.000 0.00 0.00 39.45 2.24
4 5 4.536090 ACAGAGGGGATTGAATGTCAACTA 59.464 41.667 0.00 0.00 39.45 2.24
5 6 3.331889 ACAGAGGGGATTGAATGTCAACT 59.668 43.478 0.00 0.00 39.45 3.16
6 7 3.690460 ACAGAGGGGATTGAATGTCAAC 58.310 45.455 0.00 0.00 39.45 3.18
7 8 5.222027 TGTTACAGAGGGGATTGAATGTCAA 60.222 40.000 0.00 0.00 41.09 3.18
8 9 4.288366 TGTTACAGAGGGGATTGAATGTCA 59.712 41.667 0.00 0.00 0.00 3.58
9 10 4.843728 TGTTACAGAGGGGATTGAATGTC 58.156 43.478 0.00 0.00 0.00 3.06
10 11 4.927267 TGTTACAGAGGGGATTGAATGT 57.073 40.909 0.00 0.00 0.00 2.71
11 12 6.595682 AGTATGTTACAGAGGGGATTGAATG 58.404 40.000 0.00 0.00 0.00 2.67
12 13 6.831664 AGTATGTTACAGAGGGGATTGAAT 57.168 37.500 0.00 0.00 0.00 2.57
13 14 6.214615 TGAAGTATGTTACAGAGGGGATTGAA 59.785 38.462 0.00 0.00 0.00 2.69
14 15 5.724370 TGAAGTATGTTACAGAGGGGATTGA 59.276 40.000 0.00 0.00 0.00 2.57
15 16 5.989477 TGAAGTATGTTACAGAGGGGATTG 58.011 41.667 0.00 0.00 0.00 2.67
16 17 6.636454 TTGAAGTATGTTACAGAGGGGATT 57.364 37.500 0.00 0.00 0.00 3.01
17 18 6.831664 ATTGAAGTATGTTACAGAGGGGAT 57.168 37.500 0.00 0.00 0.00 3.85
18 19 7.931015 ATATTGAAGTATGTTACAGAGGGGA 57.069 36.000 0.00 0.00 0.00 4.81
19 20 8.980481 AAATATTGAAGTATGTTACAGAGGGG 57.020 34.615 0.00 0.00 0.00 4.79
42 43 9.496873 TCGAGTCATTTAACAAGGAGATAAAAA 57.503 29.630 0.00 0.00 29.78 1.94
43 44 8.932791 GTCGAGTCATTTAACAAGGAGATAAAA 58.067 33.333 0.00 0.00 29.78 1.52
44 45 8.092068 TGTCGAGTCATTTAACAAGGAGATAAA 58.908 33.333 0.00 0.00 0.00 1.40
45 46 7.608153 TGTCGAGTCATTTAACAAGGAGATAA 58.392 34.615 0.00 0.00 0.00 1.75
46 47 7.165460 TGTCGAGTCATTTAACAAGGAGATA 57.835 36.000 0.00 0.00 0.00 1.98
47 48 6.037786 TGTCGAGTCATTTAACAAGGAGAT 57.962 37.500 0.00 0.00 0.00 2.75
48 49 5.462530 TGTCGAGTCATTTAACAAGGAGA 57.537 39.130 0.00 0.00 0.00 3.71
49 50 6.591834 AGAATGTCGAGTCATTTAACAAGGAG 59.408 38.462 3.10 0.00 38.03 3.69
50 51 6.464222 AGAATGTCGAGTCATTTAACAAGGA 58.536 36.000 3.10 0.00 38.03 3.36
51 52 6.368791 TGAGAATGTCGAGTCATTTAACAAGG 59.631 38.462 3.10 0.00 38.03 3.61
52 53 7.351414 TGAGAATGTCGAGTCATTTAACAAG 57.649 36.000 3.10 0.00 38.03 3.16
53 54 7.819415 AGATGAGAATGTCGAGTCATTTAACAA 59.181 33.333 3.10 0.00 38.03 2.83
54 55 7.276438 CAGATGAGAATGTCGAGTCATTTAACA 59.724 37.037 3.10 4.97 38.03 2.41
55 56 7.276658 ACAGATGAGAATGTCGAGTCATTTAAC 59.723 37.037 3.10 0.45 38.03 2.01
56 57 7.323420 ACAGATGAGAATGTCGAGTCATTTAA 58.677 34.615 3.10 0.00 38.03 1.52
57 58 6.867550 ACAGATGAGAATGTCGAGTCATTTA 58.132 36.000 3.10 0.00 38.03 1.40
58 59 5.728471 ACAGATGAGAATGTCGAGTCATTT 58.272 37.500 3.10 0.00 38.03 2.32
59 60 5.336150 ACAGATGAGAATGTCGAGTCATT 57.664 39.130 1.19 1.19 40.20 2.57
60 61 4.998671 ACAGATGAGAATGTCGAGTCAT 57.001 40.909 0.00 0.00 32.24 3.06
61 62 4.790765 AACAGATGAGAATGTCGAGTCA 57.209 40.909 0.00 0.00 0.00 3.41
62 63 6.125327 TCTAACAGATGAGAATGTCGAGTC 57.875 41.667 0.00 0.00 0.00 3.36
63 64 6.516739 TTCTAACAGATGAGAATGTCGAGT 57.483 37.500 0.00 0.00 0.00 4.18
64 65 7.818493 TTTTCTAACAGATGAGAATGTCGAG 57.182 36.000 0.00 0.00 31.91 4.04
65 66 8.777865 ATTTTTCTAACAGATGAGAATGTCGA 57.222 30.769 0.00 0.00 31.91 4.20
66 67 9.907576 GTATTTTTCTAACAGATGAGAATGTCG 57.092 33.333 0.00 0.00 31.91 4.35
90 91 8.692710 CCACTAACAACCTAAGATCATGTAGTA 58.307 37.037 0.00 0.00 0.00 1.82
91 92 7.399191 TCCACTAACAACCTAAGATCATGTAGT 59.601 37.037 0.00 0.00 0.00 2.73
92 93 7.707035 GTCCACTAACAACCTAAGATCATGTAG 59.293 40.741 0.00 0.00 0.00 2.74
93 94 7.553334 GTCCACTAACAACCTAAGATCATGTA 58.447 38.462 0.00 0.00 0.00 2.29
94 95 6.407202 GTCCACTAACAACCTAAGATCATGT 58.593 40.000 0.00 0.00 0.00 3.21
95 96 5.520288 CGTCCACTAACAACCTAAGATCATG 59.480 44.000 0.00 0.00 0.00 3.07
96 97 5.187186 ACGTCCACTAACAACCTAAGATCAT 59.813 40.000 0.00 0.00 0.00 2.45
97 98 4.525487 ACGTCCACTAACAACCTAAGATCA 59.475 41.667 0.00 0.00 0.00 2.92
98 99 5.069501 ACGTCCACTAACAACCTAAGATC 57.930 43.478 0.00 0.00 0.00 2.75
99 100 5.011329 TCAACGTCCACTAACAACCTAAGAT 59.989 40.000 0.00 0.00 0.00 2.40
100 101 4.341806 TCAACGTCCACTAACAACCTAAGA 59.658 41.667 0.00 0.00 0.00 2.10
101 102 4.624015 TCAACGTCCACTAACAACCTAAG 58.376 43.478 0.00 0.00 0.00 2.18
102 103 4.669206 TCAACGTCCACTAACAACCTAA 57.331 40.909 0.00 0.00 0.00 2.69
103 104 4.877378 ATCAACGTCCACTAACAACCTA 57.123 40.909 0.00 0.00 0.00 3.08
104 105 3.764237 ATCAACGTCCACTAACAACCT 57.236 42.857 0.00 0.00 0.00 3.50
105 106 4.823790 AAATCAACGTCCACTAACAACC 57.176 40.909 0.00 0.00 0.00 3.77
106 107 5.236911 TGGTAAATCAACGTCCACTAACAAC 59.763 40.000 0.00 0.00 0.00 3.32
107 108 5.366460 TGGTAAATCAACGTCCACTAACAA 58.634 37.500 0.00 0.00 0.00 2.83
108 109 4.958509 TGGTAAATCAACGTCCACTAACA 58.041 39.130 0.00 0.00 0.00 2.41
109 110 5.927954 TTGGTAAATCAACGTCCACTAAC 57.072 39.130 0.00 0.00 0.00 2.34
110 111 6.543100 ACTTTTGGTAAATCAACGTCCACTAA 59.457 34.615 0.00 0.00 0.00 2.24
111 112 6.017770 CACTTTTGGTAAATCAACGTCCACTA 60.018 38.462 0.00 0.00 0.00 2.74
112 113 4.885325 ACTTTTGGTAAATCAACGTCCACT 59.115 37.500 0.00 0.00 0.00 4.00
113 114 4.973663 CACTTTTGGTAAATCAACGTCCAC 59.026 41.667 0.00 0.00 0.00 4.02
114 115 4.882427 TCACTTTTGGTAAATCAACGTCCA 59.118 37.500 0.00 0.00 0.00 4.02
115 116 5.427036 TCACTTTTGGTAAATCAACGTCC 57.573 39.130 0.00 0.00 0.00 4.79
116 117 5.398416 GCTTCACTTTTGGTAAATCAACGTC 59.602 40.000 0.00 0.00 0.00 4.34
117 118 5.278604 GCTTCACTTTTGGTAAATCAACGT 58.721 37.500 0.00 0.00 0.00 3.99
118 119 4.679654 GGCTTCACTTTTGGTAAATCAACG 59.320 41.667 0.00 0.00 0.00 4.10
119 120 5.842907 AGGCTTCACTTTTGGTAAATCAAC 58.157 37.500 0.00 0.00 0.00 3.18
120 121 7.430441 GTTAGGCTTCACTTTTGGTAAATCAA 58.570 34.615 0.00 0.00 0.00 2.57
121 122 6.015772 GGTTAGGCTTCACTTTTGGTAAATCA 60.016 38.462 0.00 0.00 0.00 2.57
122 123 6.208797 AGGTTAGGCTTCACTTTTGGTAAATC 59.791 38.462 0.00 0.00 0.00 2.17
123 124 6.015434 CAGGTTAGGCTTCACTTTTGGTAAAT 60.015 38.462 0.00 0.00 0.00 1.40
124 125 5.300792 CAGGTTAGGCTTCACTTTTGGTAAA 59.699 40.000 0.00 0.00 0.00 2.01
125 126 4.825085 CAGGTTAGGCTTCACTTTTGGTAA 59.175 41.667 0.00 0.00 0.00 2.85
126 127 4.394729 CAGGTTAGGCTTCACTTTTGGTA 58.605 43.478 0.00 0.00 0.00 3.25
127 128 3.222603 CAGGTTAGGCTTCACTTTTGGT 58.777 45.455 0.00 0.00 0.00 3.67
128 129 2.029918 GCAGGTTAGGCTTCACTTTTGG 60.030 50.000 0.00 0.00 0.00 3.28
129 130 2.029918 GGCAGGTTAGGCTTCACTTTTG 60.030 50.000 0.00 0.00 0.00 2.44
130 131 2.239400 GGCAGGTTAGGCTTCACTTTT 58.761 47.619 0.00 0.00 0.00 2.27
131 132 1.144913 TGGCAGGTTAGGCTTCACTTT 59.855 47.619 0.00 0.00 34.73 2.66
132 133 0.771127 TGGCAGGTTAGGCTTCACTT 59.229 50.000 0.00 0.00 34.73 3.16
133 134 0.036875 GTGGCAGGTTAGGCTTCACT 59.963 55.000 0.00 0.00 34.73 3.41
134 135 0.250727 TGTGGCAGGTTAGGCTTCAC 60.251 55.000 0.00 0.00 34.73 3.18
135 136 0.476338 TTGTGGCAGGTTAGGCTTCA 59.524 50.000 0.00 0.00 34.73 3.02
136 137 1.168714 CTTGTGGCAGGTTAGGCTTC 58.831 55.000 0.00 0.00 34.73 3.86
137 138 0.251341 CCTTGTGGCAGGTTAGGCTT 60.251 55.000 0.00 0.00 34.73 4.35
138 139 1.380302 CCTTGTGGCAGGTTAGGCT 59.620 57.895 0.00 0.00 34.73 4.58
139 140 4.002797 CCTTGTGGCAGGTTAGGC 57.997 61.111 0.00 0.00 0.00 3.93
149 150 1.470098 CTTCCATTCTTCGCCTTGTGG 59.530 52.381 0.00 0.00 0.00 4.17
150 151 2.417933 CTCTTCCATTCTTCGCCTTGTG 59.582 50.000 0.00 0.00 0.00 3.33
151 152 2.039084 ACTCTTCCATTCTTCGCCTTGT 59.961 45.455 0.00 0.00 0.00 3.16
152 153 2.704572 ACTCTTCCATTCTTCGCCTTG 58.295 47.619 0.00 0.00 0.00 3.61
153 154 3.425162 AACTCTTCCATTCTTCGCCTT 57.575 42.857 0.00 0.00 0.00 4.35
154 155 3.425162 AAACTCTTCCATTCTTCGCCT 57.575 42.857 0.00 0.00 0.00 5.52
155 156 4.636206 ACATAAACTCTTCCATTCTTCGCC 59.364 41.667 0.00 0.00 0.00 5.54
156 157 5.803020 ACATAAACTCTTCCATTCTTCGC 57.197 39.130 0.00 0.00 0.00 4.70
157 158 8.717821 TGTTAACATAAACTCTTCCATTCTTCG 58.282 33.333 3.59 0.00 0.00 3.79
162 163 9.912634 CACAATGTTAACATAAACTCTTCCATT 57.087 29.630 21.07 0.00 35.10 3.16
163 164 9.077885 ACACAATGTTAACATAAACTCTTCCAT 57.922 29.630 21.07 0.00 35.10 3.41
164 165 8.458573 ACACAATGTTAACATAAACTCTTCCA 57.541 30.769 21.07 0.00 35.10 3.53
168 169 9.840427 GCATAACACAATGTTAACATAAACTCT 57.160 29.630 21.07 1.94 44.84 3.24
169 170 9.072294 GGCATAACACAATGTTAACATAAACTC 57.928 33.333 21.07 5.34 44.84 3.01
170 171 8.802267 AGGCATAACACAATGTTAACATAAACT 58.198 29.630 21.07 3.08 44.84 2.66
171 172 8.980143 AGGCATAACACAATGTTAACATAAAC 57.020 30.769 21.07 4.40 44.84 2.01
185 186 9.203421 CGAGACATATAAATAAGGCATAACACA 57.797 33.333 0.00 0.00 0.00 3.72
186 187 9.419297 TCGAGACATATAAATAAGGCATAACAC 57.581 33.333 0.00 0.00 0.00 3.32
187 188 9.639601 CTCGAGACATATAAATAAGGCATAACA 57.360 33.333 6.58 0.00 0.00 2.41
188 189 9.856488 TCTCGAGACATATAAATAAGGCATAAC 57.144 33.333 12.08 0.00 0.00 1.89
190 191 8.687242 CCTCTCGAGACATATAAATAAGGCATA 58.313 37.037 12.08 0.00 0.00 3.14
191 192 7.397476 TCCTCTCGAGACATATAAATAAGGCAT 59.603 37.037 12.08 0.00 0.00 4.40
192 193 6.719829 TCCTCTCGAGACATATAAATAAGGCA 59.280 38.462 12.08 0.00 0.00 4.75
193 194 7.030768 GTCCTCTCGAGACATATAAATAAGGC 58.969 42.308 12.08 0.10 0.00 4.35
194 195 7.363094 GGGTCCTCTCGAGACATATAAATAAGG 60.363 44.444 12.08 6.81 0.00 2.69
195 196 7.540299 GGGTCCTCTCGAGACATATAAATAAG 58.460 42.308 12.08 0.00 0.00 1.73
196 197 6.150641 CGGGTCCTCTCGAGACATATAAATAA 59.849 42.308 12.08 0.00 0.00 1.40
197 198 5.646793 CGGGTCCTCTCGAGACATATAAATA 59.353 44.000 12.08 0.00 0.00 1.40
198 199 4.459685 CGGGTCCTCTCGAGACATATAAAT 59.540 45.833 12.08 0.00 0.00 1.40
199 200 3.819337 CGGGTCCTCTCGAGACATATAAA 59.181 47.826 12.08 0.00 0.00 1.40
200 201 3.072038 TCGGGTCCTCTCGAGACATATAA 59.928 47.826 12.08 0.00 0.00 0.98
201 202 2.636403 TCGGGTCCTCTCGAGACATATA 59.364 50.000 12.08 0.00 0.00 0.86
202 203 1.420514 TCGGGTCCTCTCGAGACATAT 59.579 52.381 12.08 0.00 0.00 1.78
203 204 0.835276 TCGGGTCCTCTCGAGACATA 59.165 55.000 12.08 0.00 0.00 2.29
204 205 0.183971 ATCGGGTCCTCTCGAGACAT 59.816 55.000 12.08 0.00 38.83 3.06
205 206 0.748367 CATCGGGTCCTCTCGAGACA 60.748 60.000 12.08 0.00 38.83 3.41
206 207 1.448922 CCATCGGGTCCTCTCGAGAC 61.449 65.000 12.08 2.50 38.83 3.36
207 208 1.152943 CCATCGGGTCCTCTCGAGA 60.153 63.158 15.70 15.70 38.83 4.04
208 209 0.538516 ATCCATCGGGTCCTCTCGAG 60.539 60.000 5.93 5.93 38.83 4.04
209 210 0.769247 TATCCATCGGGTCCTCTCGA 59.231 55.000 0.00 0.00 39.79 4.04
210 211 1.746220 GATATCCATCGGGTCCTCTCG 59.254 57.143 0.00 0.00 34.93 4.04
211 212 2.104170 GGATATCCATCGGGTCCTCTC 58.896 57.143 17.34 0.00 35.64 3.20
212 213 1.433199 TGGATATCCATCGGGTCCTCT 59.567 52.381 20.98 0.00 42.01 3.69
213 214 1.827969 CTGGATATCCATCGGGTCCTC 59.172 57.143 24.73 0.00 46.46 3.71
214 215 1.150135 ACTGGATATCCATCGGGTCCT 59.850 52.381 24.73 0.00 46.46 3.85
215 216 1.276421 CACTGGATATCCATCGGGTCC 59.724 57.143 24.73 0.00 46.46 4.46
216 217 1.276421 CCACTGGATATCCATCGGGTC 59.724 57.143 24.73 0.00 46.46 4.46
217 218 1.352083 CCACTGGATATCCATCGGGT 58.648 55.000 24.73 15.82 46.46 5.28
218 219 0.615331 CCCACTGGATATCCATCGGG 59.385 60.000 30.56 30.56 46.46 5.14
219 220 1.352083 ACCCACTGGATATCCATCGG 58.648 55.000 24.73 24.24 46.46 4.18
220 221 3.118629 CCATACCCACTGGATATCCATCG 60.119 52.174 24.73 16.24 46.46 3.84
221 222 4.104086 TCCATACCCACTGGATATCCATC 58.896 47.826 24.73 0.00 46.46 3.51
222 223 4.160542 TCCATACCCACTGGATATCCAT 57.839 45.455 24.73 12.15 46.46 3.41
223 224 3.646867 TCCATACCCACTGGATATCCA 57.353 47.619 23.17 23.17 45.30 3.41
229 230 3.646867 TGGATATCCATACCCACTGGA 57.353 47.619 20.98 0.00 46.45 3.86
241 242 5.128499 CCATGTCTAGACCTGATGGATATCC 59.872 48.000 25.98 15.39 35.55 2.59
242 243 5.954752 TCCATGTCTAGACCTGATGGATATC 59.045 44.000 27.56 0.00 36.84 1.63
243 244 5.908590 TCCATGTCTAGACCTGATGGATAT 58.091 41.667 27.56 9.25 36.84 1.63
244 245 5.075067 TCTCCATGTCTAGACCTGATGGATA 59.925 44.000 29.69 23.76 39.30 2.59
245 246 4.140829 TCTCCATGTCTAGACCTGATGGAT 60.141 45.833 29.69 12.11 39.30 3.41
246 247 3.205282 TCTCCATGTCTAGACCTGATGGA 59.795 47.826 28.53 28.53 38.38 3.41
247 248 3.570540 TCTCCATGTCTAGACCTGATGG 58.429 50.000 24.90 24.90 35.12 3.51
248 249 6.009589 ACTATCTCCATGTCTAGACCTGATG 58.990 44.000 24.71 18.45 0.00 3.07
249 250 6.212840 ACTATCTCCATGTCTAGACCTGAT 57.787 41.667 24.71 18.37 0.00 2.90
250 251 5.654901 ACTATCTCCATGTCTAGACCTGA 57.345 43.478 24.71 15.15 0.00 3.86
251 252 6.723298 AAACTATCTCCATGTCTAGACCTG 57.277 41.667 20.11 19.13 0.00 4.00
252 253 7.839705 TGTAAAACTATCTCCATGTCTAGACCT 59.160 37.037 20.11 7.68 0.00 3.85
253 254 7.921745 GTGTAAAACTATCTCCATGTCTAGACC 59.078 40.741 20.11 3.06 0.00 3.85
254 255 7.921745 GGTGTAAAACTATCTCCATGTCTAGAC 59.078 40.741 16.32 16.32 0.00 2.59
255 256 7.069578 GGGTGTAAAACTATCTCCATGTCTAGA 59.930 40.741 0.00 0.00 0.00 2.43
256 257 7.210873 GGGTGTAAAACTATCTCCATGTCTAG 58.789 42.308 0.00 0.00 0.00 2.43
257 258 6.183360 CGGGTGTAAAACTATCTCCATGTCTA 60.183 42.308 0.00 0.00 0.00 2.59
258 259 5.395324 CGGGTGTAAAACTATCTCCATGTCT 60.395 44.000 0.00 0.00 0.00 3.41
259 260 4.809426 CGGGTGTAAAACTATCTCCATGTC 59.191 45.833 0.00 0.00 0.00 3.06
260 261 4.224370 ACGGGTGTAAAACTATCTCCATGT 59.776 41.667 0.00 0.00 0.00 3.21
261 262 4.570772 CACGGGTGTAAAACTATCTCCATG 59.429 45.833 0.00 0.00 0.00 3.66
262 263 4.383770 CCACGGGTGTAAAACTATCTCCAT 60.384 45.833 0.00 0.00 0.00 3.41
263 264 3.055675 CCACGGGTGTAAAACTATCTCCA 60.056 47.826 0.00 0.00 0.00 3.86
264 265 3.196254 TCCACGGGTGTAAAACTATCTCC 59.804 47.826 0.00 0.00 0.00 3.71
265 266 4.460948 TCCACGGGTGTAAAACTATCTC 57.539 45.455 0.00 0.00 0.00 2.75
266 267 5.431179 AATCCACGGGTGTAAAACTATCT 57.569 39.130 0.00 0.00 0.00 1.98
267 268 6.505044 AAAATCCACGGGTGTAAAACTATC 57.495 37.500 0.00 0.00 0.00 2.08
268 269 6.904463 AAAAATCCACGGGTGTAAAACTAT 57.096 33.333 0.00 0.00 0.00 2.12
289 290 2.035321 GTCTTTGCCCGTCCATGAAAAA 59.965 45.455 0.00 0.00 0.00 1.94
290 291 1.611491 GTCTTTGCCCGTCCATGAAAA 59.389 47.619 0.00 0.00 0.00 2.29
291 292 1.243902 GTCTTTGCCCGTCCATGAAA 58.756 50.000 0.00 0.00 0.00 2.69
292 293 0.608035 GGTCTTTGCCCGTCCATGAA 60.608 55.000 0.00 0.00 0.00 2.57
293 294 1.002624 GGTCTTTGCCCGTCCATGA 60.003 57.895 0.00 0.00 0.00 3.07
294 295 2.398554 CGGTCTTTGCCCGTCCATG 61.399 63.158 0.00 0.00 40.59 3.66
295 296 2.046314 CGGTCTTTGCCCGTCCAT 60.046 61.111 0.00 0.00 40.59 3.41
301 302 0.804989 CATGAAGACGGTCTTTGCCC 59.195 55.000 23.17 11.75 36.73 5.36
302 303 0.804989 CCATGAAGACGGTCTTTGCC 59.195 55.000 23.17 12.09 36.73 4.52
303 304 1.808411 TCCATGAAGACGGTCTTTGC 58.192 50.000 23.17 12.75 36.73 3.68
304 305 4.512944 CCATATCCATGAAGACGGTCTTTG 59.487 45.833 23.17 17.72 36.73 2.77
305 306 4.408921 TCCATATCCATGAAGACGGTCTTT 59.591 41.667 23.17 9.85 36.73 2.52
306 307 3.967326 TCCATATCCATGAAGACGGTCTT 59.033 43.478 22.59 22.59 39.87 3.01
307 308 3.576861 TCCATATCCATGAAGACGGTCT 58.423 45.455 4.45 4.45 33.67 3.85
308 309 4.543590 ATCCATATCCATGAAGACGGTC 57.456 45.455 0.00 0.00 33.67 4.79
309 310 5.104776 CCATATCCATATCCATGAAGACGGT 60.105 44.000 0.00 0.00 33.67 4.83
310 311 5.129320 TCCATATCCATATCCATGAAGACGG 59.871 44.000 0.00 0.00 33.67 4.79
311 312 6.225981 TCCATATCCATATCCATGAAGACG 57.774 41.667 0.00 0.00 33.67 4.18
312 313 9.471702 AAAATCCATATCCATATCCATGAAGAC 57.528 33.333 0.00 0.00 33.67 3.01
331 332 8.482128 GGATTGGGTTGAACAATATAAAATCCA 58.518 33.333 16.21 0.00 39.29 3.41
332 333 8.482128 TGGATTGGGTTGAACAATATAAAATCC 58.518 33.333 0.00 15.26 38.57 3.01
333 334 9.883142 TTGGATTGGGTTGAACAATATAAAATC 57.117 29.630 0.00 0.00 38.57 2.17
335 336 9.495572 GTTTGGATTGGGTTGAACAATATAAAA 57.504 29.630 0.00 0.00 38.57 1.52
336 337 8.097662 GGTTTGGATTGGGTTGAACAATATAAA 58.902 33.333 0.00 0.00 38.57 1.40
337 338 7.310734 GGGTTTGGATTGGGTTGAACAATATAA 60.311 37.037 0.00 0.00 38.57 0.98
338 339 6.155393 GGGTTTGGATTGGGTTGAACAATATA 59.845 38.462 0.00 0.00 38.57 0.86
339 340 5.045942 GGGTTTGGATTGGGTTGAACAATAT 60.046 40.000 0.00 0.00 38.57 1.28
340 341 4.284746 GGGTTTGGATTGGGTTGAACAATA 59.715 41.667 0.00 0.00 38.57 1.90
341 342 3.072330 GGGTTTGGATTGGGTTGAACAAT 59.928 43.478 0.00 0.00 40.98 2.71
342 343 2.436173 GGGTTTGGATTGGGTTGAACAA 59.564 45.455 0.00 0.00 0.00 2.83
343 344 2.043227 GGGTTTGGATTGGGTTGAACA 58.957 47.619 0.00 0.00 0.00 3.18
344 345 1.000394 CGGGTTTGGATTGGGTTGAAC 60.000 52.381 0.00 0.00 0.00 3.18
345 346 1.133450 TCGGGTTTGGATTGGGTTGAA 60.133 47.619 0.00 0.00 0.00 2.69
346 347 0.478942 TCGGGTTTGGATTGGGTTGA 59.521 50.000 0.00 0.00 0.00 3.18
347 348 0.887933 CTCGGGTTTGGATTGGGTTG 59.112 55.000 0.00 0.00 0.00 3.77
348 349 0.898326 GCTCGGGTTTGGATTGGGTT 60.898 55.000 0.00 0.00 0.00 4.11
349 350 1.304134 GCTCGGGTTTGGATTGGGT 60.304 57.895 0.00 0.00 0.00 4.51
350 351 2.052104 GGCTCGGGTTTGGATTGGG 61.052 63.158 0.00 0.00 0.00 4.12
351 352 0.897863 TTGGCTCGGGTTTGGATTGG 60.898 55.000 0.00 0.00 0.00 3.16
352 353 1.135024 CATTGGCTCGGGTTTGGATTG 60.135 52.381 0.00 0.00 0.00 2.67
353 354 1.185315 CATTGGCTCGGGTTTGGATT 58.815 50.000 0.00 0.00 0.00 3.01
354 355 1.322538 GCATTGGCTCGGGTTTGGAT 61.323 55.000 0.00 0.00 36.96 3.41
355 356 1.976474 GCATTGGCTCGGGTTTGGA 60.976 57.895 0.00 0.00 36.96 3.53
356 357 2.573340 GCATTGGCTCGGGTTTGG 59.427 61.111 0.00 0.00 36.96 3.28
357 358 1.606885 ATGGCATTGGCTCGGGTTTG 61.607 55.000 11.84 0.00 40.87 2.93
358 359 1.305213 ATGGCATTGGCTCGGGTTT 60.305 52.632 11.84 0.00 40.87 3.27
359 360 1.754234 GATGGCATTGGCTCGGGTT 60.754 57.895 11.84 0.00 40.87 4.11
360 361 2.124151 GATGGCATTGGCTCGGGT 60.124 61.111 11.84 0.00 40.87 5.28
361 362 2.908940 GGATGGCATTGGCTCGGG 60.909 66.667 11.84 0.00 40.87 5.14
362 363 0.179020 TAAGGATGGCATTGGCTCGG 60.179 55.000 11.84 0.00 40.87 4.63
363 364 1.233019 CTAAGGATGGCATTGGCTCG 58.767 55.000 11.84 0.00 40.87 5.03
364 365 0.957362 GCTAAGGATGGCATTGGCTC 59.043 55.000 11.84 6.47 38.91 4.70
365 366 0.468771 GGCTAAGGATGGCATTGGCT 60.469 55.000 11.84 0.00 41.25 4.75
366 367 1.799258 CGGCTAAGGATGGCATTGGC 61.799 60.000 0.00 2.73 40.85 4.52
367 368 1.174712 CCGGCTAAGGATGGCATTGG 61.175 60.000 0.00 0.00 34.13 3.16
368 369 0.179020 TCCGGCTAAGGATGGCATTG 60.179 55.000 0.00 0.00 34.92 2.82
369 370 0.109342 CTCCGGCTAAGGATGGCATT 59.891 55.000 0.00 0.00 39.96 3.56
370 371 0.764369 TCTCCGGCTAAGGATGGCAT 60.764 55.000 0.00 0.00 39.96 4.40
371 372 0.764369 ATCTCCGGCTAAGGATGGCA 60.764 55.000 0.00 0.00 39.96 4.92
372 373 0.321122 CATCTCCGGCTAAGGATGGC 60.321 60.000 0.00 0.00 39.96 4.40
373 374 1.051812 ACATCTCCGGCTAAGGATGG 58.948 55.000 18.02 7.19 39.96 3.51
374 375 3.555168 GGTTACATCTCCGGCTAAGGATG 60.555 52.174 0.00 7.98 39.96 3.51
375 376 2.633481 GGTTACATCTCCGGCTAAGGAT 59.367 50.000 0.00 0.00 39.96 3.24
376 377 2.037144 GGTTACATCTCCGGCTAAGGA 58.963 52.381 0.00 0.00 38.80 3.36
377 378 1.070289 GGGTTACATCTCCGGCTAAGG 59.930 57.143 0.00 0.00 0.00 2.69
378 379 1.760613 TGGGTTACATCTCCGGCTAAG 59.239 52.381 0.00 0.00 0.00 2.18
379 380 1.760613 CTGGGTTACATCTCCGGCTAA 59.239 52.381 0.00 0.00 0.00 3.09
380 381 1.063492 TCTGGGTTACATCTCCGGCTA 60.063 52.381 0.00 0.00 0.00 3.93
381 382 0.325296 TCTGGGTTACATCTCCGGCT 60.325 55.000 0.00 0.00 0.00 5.52
425 426 0.750249 AAGTTTCAAAGCGGTTGGGG 59.250 50.000 0.00 0.00 37.85 4.96
442 443 2.341677 TAGGGGAGGGGAGGGGAAG 61.342 68.421 0.00 0.00 0.00 3.46
457 459 1.445716 CGAGGTAGGCGTCCAGTAGG 61.446 65.000 4.10 0.00 0.00 3.18
459 461 0.182061 ATCGAGGTAGGCGTCCAGTA 59.818 55.000 0.00 0.00 0.00 2.74
481 483 2.586357 GTGTAGCGGGCTAGCAGC 60.586 66.667 22.03 22.03 41.46 5.25
483 485 3.467226 GGGTGTAGCGGGCTAGCA 61.467 66.667 18.24 0.34 40.15 3.49
537 540 1.523938 GGTGTTAGGCGGCAGATCC 60.524 63.158 13.08 3.03 0.00 3.36
538 541 0.530870 GAGGTGTTAGGCGGCAGATC 60.531 60.000 13.08 0.00 0.00 2.75
539 542 0.978146 AGAGGTGTTAGGCGGCAGAT 60.978 55.000 13.08 0.00 0.00 2.90
540 543 0.323999 TAGAGGTGTTAGGCGGCAGA 60.324 55.000 13.08 0.00 0.00 4.26
541 544 0.535335 TTAGAGGTGTTAGGCGGCAG 59.465 55.000 13.08 0.00 0.00 4.85
542 545 0.978151 TTTAGAGGTGTTAGGCGGCA 59.022 50.000 13.08 0.00 0.00 5.69
543 546 2.210961 GATTTAGAGGTGTTAGGCGGC 58.789 52.381 0.00 0.00 0.00 6.53
544 547 3.195661 GTGATTTAGAGGTGTTAGGCGG 58.804 50.000 0.00 0.00 0.00 6.13
545 548 3.195661 GGTGATTTAGAGGTGTTAGGCG 58.804 50.000 0.00 0.00 0.00 5.52
546 549 3.195661 CGGTGATTTAGAGGTGTTAGGC 58.804 50.000 0.00 0.00 0.00 3.93
547 550 4.430908 GACGGTGATTTAGAGGTGTTAGG 58.569 47.826 0.00 0.00 0.00 2.69
548 551 4.103357 CGACGGTGATTTAGAGGTGTTAG 58.897 47.826 0.00 0.00 0.00 2.34
549 552 3.507233 ACGACGGTGATTTAGAGGTGTTA 59.493 43.478 0.00 0.00 0.00 2.41
553 556 3.582780 GAAACGACGGTGATTTAGAGGT 58.417 45.455 0.00 0.00 0.00 3.85
599 602 2.096442 GGCAAGCTTCAAATGGCGC 61.096 57.895 0.00 0.00 0.00 6.53
625 628 4.681421 CTTGAGGACGAGCAGCAA 57.319 55.556 0.00 0.00 0.00 3.91
631 634 1.137825 GGTCGAGCTTGAGGACGAG 59.862 63.158 3.10 0.00 35.52 4.18
646 649 3.982372 TTGATGACGAGCGGCGGTC 62.982 63.158 27.66 27.66 46.49 4.79
647 650 3.989698 CTTGATGACGAGCGGCGGT 62.990 63.158 13.08 13.08 46.49 5.68
648 651 3.257561 CTTGATGACGAGCGGCGG 61.258 66.667 9.78 0.00 46.49 6.13
649 652 3.918220 GCTTGATGACGAGCGGCG 61.918 66.667 0.51 0.51 42.61 6.46
660 701 2.125512 GCGGTGGTCGAGCTTGAT 60.126 61.111 16.64 0.00 42.43 2.57
683 724 4.742201 GCCGAGCTTGAGGACGCA 62.742 66.667 1.22 0.00 0.00 5.24
813 929 9.029368 TCTCCAGTAGATGATGTATATTTGGAG 57.971 37.037 12.17 12.17 45.78 3.86
814 930 8.956446 TCTCCAGTAGATGATGTATATTTGGA 57.044 34.615 0.00 0.00 0.00 3.53
828 944 6.014669 GCAAGATTAGACCATCTCCAGTAGAT 60.015 42.308 0.00 0.00 46.36 1.98
829 945 5.303078 GCAAGATTAGACCATCTCCAGTAGA 59.697 44.000 0.00 0.00 39.02 2.59
830 946 5.069648 TGCAAGATTAGACCATCTCCAGTAG 59.930 44.000 0.00 0.00 31.87 2.57
831 947 4.962362 TGCAAGATTAGACCATCTCCAGTA 59.038 41.667 0.00 0.00 31.87 2.74
832 948 3.776969 TGCAAGATTAGACCATCTCCAGT 59.223 43.478 0.00 0.00 31.87 4.00
842 958 5.786401 AACAGAACGATGCAAGATTAGAC 57.214 39.130 0.00 0.00 0.00 2.59
944 1067 1.276705 AGAACGAAGAAGGGGAGAAGC 59.723 52.381 0.00 0.00 0.00 3.86
984 1107 1.673168 CCATGTTCTTGCTCTAGGGC 58.327 55.000 7.96 7.96 0.00 5.19
991 1114 1.709147 GCGATCGCCATGTTCTTGCT 61.709 55.000 29.48 0.00 34.56 3.91
1207 1348 2.182030 GGCGAGAGGTTCAGTCCG 59.818 66.667 0.00 0.00 0.00 4.79
1266 1407 3.319198 GGTTCACCTCCTCCGCCA 61.319 66.667 0.00 0.00 0.00 5.69
1318 1459 3.000819 CCCGACCTACCACTGGCA 61.001 66.667 0.00 0.00 0.00 4.92
1319 1460 3.782443 CCCCGACCTACCACTGGC 61.782 72.222 0.00 0.00 0.00 4.85
1324 1465 2.308118 GATCCTCCCCCGACCTACCA 62.308 65.000 0.00 0.00 0.00 3.25
1327 1468 0.105658 CAAGATCCTCCCCCGACCTA 60.106 60.000 0.00 0.00 0.00 3.08
1591 1732 5.520748 AAACCCTCACATCTATCCTTTGT 57.479 39.130 0.00 0.00 0.00 2.83
1647 1797 4.631377 CAGAAAACGACCAGATAATGCTGA 59.369 41.667 0.00 0.00 38.14 4.26
1655 1805 4.216257 CCAAATGTCAGAAAACGACCAGAT 59.784 41.667 0.00 0.00 32.15 2.90
1666 1816 4.202556 TGAGTTCATCCCCAAATGTCAGAA 60.203 41.667 0.00 0.00 0.00 3.02
1789 1939 3.126858 CCATGACACTAAAACCACCATCG 59.873 47.826 0.00 0.00 0.00 3.84
1814 1964 3.524606 ATTGCCAGCAGATGCCGC 61.525 61.111 0.14 4.42 43.38 6.53
1867 2017 3.533606 ACCTCCAGAATGAGTTCATCG 57.466 47.619 0.00 0.00 39.69 3.84
1870 2020 5.104776 CCTCATAACCTCCAGAATGAGTTCA 60.105 44.000 9.58 0.00 42.39 3.18
1954 2104 0.524816 CCACCACTCGGTTATCGTCG 60.525 60.000 0.00 0.00 46.31 5.12
2045 2195 2.663808 TGCAAATCAAAGTGATGCACG 58.336 42.857 3.09 0.00 37.44 5.34
2150 2301 4.720649 TCTCATACAGACAGCACCTTAC 57.279 45.455 0.00 0.00 0.00 2.34
2221 2372 8.152898 TCTACATCATGCTAGATTGCAGTTAAT 58.847 33.333 0.00 0.00 46.71 1.40
2249 2407 2.742053 ACATTCAGATGTGCACCGTTAC 59.258 45.455 15.69 1.14 44.64 2.50
2253 2411 2.621338 ACTACATTCAGATGTGCACCG 58.379 47.619 15.69 0.00 45.80 4.94
2258 2416 9.154847 TGTGAAATCTAACTACATTCAGATGTG 57.845 33.333 2.47 0.00 45.80 3.21
2261 2419 9.553064 GGATGTGAAATCTAACTACATTCAGAT 57.447 33.333 0.00 0.00 36.90 2.90
2283 2442 8.693504 GTTCATGTCAATATTTTTATGCGGATG 58.306 33.333 0.00 0.00 0.00 3.51
2349 2511 5.511202 CCATGTGATACCAAGTTGGCTTTTT 60.511 40.000 22.25 4.45 42.67 1.94
2352 2514 3.091545 CCATGTGATACCAAGTTGGCTT 58.908 45.455 22.25 9.39 42.67 4.35
2403 2565 2.464157 TGTACATGTGCCGATGACAA 57.536 45.000 9.11 0.00 0.00 3.18
2430 2592 4.572389 ACAGTGTCAACTTACAAGCAAGAG 59.428 41.667 0.00 0.00 32.98 2.85
2461 2623 7.398047 TCATCTCTTTGGATCCAACATTCATTT 59.602 33.333 27.04 4.77 35.46 2.32
2468 2741 6.720748 TCAATTTCATCTCTTTGGATCCAACA 59.279 34.615 27.04 15.11 35.46 3.33
2469 2742 7.031975 GTCAATTTCATCTCTTTGGATCCAAC 58.968 38.462 27.04 6.50 35.46 3.77
2497 2770 1.949525 CCATATACCTGCACCACAAGC 59.050 52.381 0.00 0.00 0.00 4.01
2524 2797 3.123959 CGCCAATTTCTGCAAATTTCCTG 59.876 43.478 0.00 0.00 39.75 3.86
2525 2798 3.244181 ACGCCAATTTCTGCAAATTTCCT 60.244 39.130 0.00 0.00 39.75 3.36
2693 2966 9.271828 GGAAATTGAAAGTTGAAACCATAACAT 57.728 29.630 0.00 0.00 0.00 2.71
2705 2978 2.727798 CTGCTGCGGAAATTGAAAGTTG 59.272 45.455 1.17 0.00 0.00 3.16
2706 2979 2.362077 ACTGCTGCGGAAATTGAAAGTT 59.638 40.909 16.72 0.00 0.00 2.66
2707 2980 1.956477 ACTGCTGCGGAAATTGAAAGT 59.044 42.857 16.72 0.00 0.00 2.66
2708 2981 2.030893 TCACTGCTGCGGAAATTGAAAG 60.031 45.455 16.72 0.00 0.00 2.62
2839 3123 7.759489 AGTAAAAGGAAGCAATAACATGTCA 57.241 32.000 0.00 0.00 0.00 3.58
2928 3214 7.775053 AAGCATTCAGGGTAAATGACTTTTA 57.225 32.000 0.25 0.00 36.43 1.52
2929 3215 6.670695 AAGCATTCAGGGTAAATGACTTTT 57.329 33.333 0.25 0.00 36.43 2.27
2930 3216 7.615365 TCATAAGCATTCAGGGTAAATGACTTT 59.385 33.333 0.25 0.00 36.43 2.66
2960 3246 8.038944 GGTACACAAGAACTAAAGATGGTGATA 58.961 37.037 0.00 0.00 0.00 2.15
3302 3589 4.527038 ACTGACGGGTCTTCAGAAAATCTA 59.473 41.667 6.95 0.00 42.81 1.98
3342 3629 0.885879 CAGCATTGCACATCTGTGGT 59.114 50.000 11.91 0.00 45.72 4.16
3343 3630 1.170442 TCAGCATTGCACATCTGTGG 58.830 50.000 11.91 0.00 45.72 4.17
3348 3635 4.142447 ACAGATTCTTCAGCATTGCACATC 60.142 41.667 11.91 3.08 0.00 3.06
3358 3645 7.754924 GCTCATAGAGTATACAGATTCTTCAGC 59.245 40.741 5.50 4.26 31.39 4.26
3369 3656 6.994421 TGGAAATGGCTCATAGAGTATACA 57.006 37.500 5.50 0.00 31.39 2.29
3377 3664 5.813383 ACAGGATATGGAAATGGCTCATAG 58.187 41.667 0.00 0.00 0.00 2.23
3387 3674 7.762615 CAGTTAGTTCGTTACAGGATATGGAAA 59.237 37.037 0.00 0.00 31.92 3.13
3406 3693 8.135382 AGACATTACCTACACATTCAGTTAGT 57.865 34.615 0.00 0.00 0.00 2.24
3606 3893 4.950475 TCGGAGAGATGTGACTTCTACATT 59.050 41.667 0.58 0.00 38.78 2.71
3616 3903 4.202060 GCAGTAGATTTCGGAGAGATGTGA 60.202 45.833 0.00 0.00 38.43 3.58
3623 3910 1.824852 TGCAGCAGTAGATTTCGGAGA 59.175 47.619 0.00 0.00 0.00 3.71
3637 3924 2.029110 GGAATAAAAACCAGCTGCAGCA 60.029 45.455 38.24 17.30 45.16 4.41
3666 3953 7.052873 AGAAGAAAGTATAAGCATGAGCACAT 58.947 34.615 0.00 0.00 45.49 3.21
3696 3986 3.697542 GTCCTGTGGTGGTAAAAACAAGT 59.302 43.478 0.00 0.00 0.00 3.16
3712 4002 2.230508 TCGTTAAGCAAGATCGTCCTGT 59.769 45.455 0.00 0.00 0.00 4.00
3737 4027 3.526931 TTCCTGATAAGCTTCTCCACG 57.473 47.619 0.00 0.00 0.00 4.94
3804 4094 0.473694 TCCAAGCCCAGGTCTCTCAA 60.474 55.000 0.00 0.00 0.00 3.02
3841 4131 4.037684 ACACACGGTAGGCTATCTATGTTC 59.962 45.833 8.40 0.00 0.00 3.18
3879 4170 7.382110 ACATATATTCTTCCAAGACATCCTCG 58.618 38.462 0.00 0.00 34.13 4.63
3888 4179 7.975616 CCCAAACACAACATATATTCTTCCAAG 59.024 37.037 0.00 0.00 0.00 3.61
3891 4182 7.404671 ACCCAAACACAACATATATTCTTCC 57.595 36.000 0.00 0.00 0.00 3.46
4086 4392 6.187727 ACCGGATGGAGTACATAAAATCAT 57.812 37.500 9.46 0.00 40.72 2.45
4087 4393 5.623956 ACCGGATGGAGTACATAAAATCA 57.376 39.130 9.46 0.00 40.72 2.57
4088 4394 6.289064 AGAACCGGATGGAGTACATAAAATC 58.711 40.000 9.46 0.00 40.72 2.17
4127 4495 5.165961 AGTTAGTTATGCCCATATGCGAT 57.834 39.130 0.00 0.00 0.00 4.58
4161 4529 8.657712 AGTACCCAATCTAAACAAGAAAGTACT 58.342 33.333 0.00 0.00 37.89 2.73
4183 4551 7.976135 ATCTATGCAGATGGATTTGAAGTAC 57.024 36.000 0.00 0.00 40.15 2.73
4194 4562 6.347969 CCATTGTCGTAAATCTATGCAGATGG 60.348 42.308 0.00 0.00 40.81 3.51
4224 7585 9.667107 ACGTTCAGGATTCATTCTAGAAAATAA 57.333 29.630 9.71 4.75 0.00 1.40
4229 7590 6.368791 CACAACGTTCAGGATTCATTCTAGAA 59.631 38.462 7.82 7.82 0.00 2.10
4235 7596 4.024048 GTGTCACAACGTTCAGGATTCATT 60.024 41.667 0.00 0.00 0.00 2.57
4236 7597 3.498397 GTGTCACAACGTTCAGGATTCAT 59.502 43.478 0.00 0.00 0.00 2.57
4250 7611 1.472552 CGACAACCAGAGGTGTCACAA 60.473 52.381 11.46 0.00 35.34 3.33
4255 7616 2.104111 TGAATTCGACAACCAGAGGTGT 59.896 45.455 0.04 0.00 35.34 4.16
4276 7637 5.610132 AGTTCAGATAGGAATGACCCATGAT 59.390 40.000 0.00 0.00 40.05 2.45
4282 7643 5.858381 TGCATAGTTCAGATAGGAATGACC 58.142 41.667 0.00 0.00 39.35 4.02
4299 7660 4.023622 ACGACAGCTATCTACACTGCATAG 60.024 45.833 0.00 0.00 34.72 2.23
4310 7671 4.177026 GACATTGTTGACGACAGCTATCT 58.823 43.478 3.32 0.00 39.94 1.98
4311 7672 3.926527 TGACATTGTTGACGACAGCTATC 59.073 43.478 3.32 0.00 39.94 2.08
4312 7673 3.925379 TGACATTGTTGACGACAGCTAT 58.075 40.909 3.32 0.00 39.94 2.97
4314 7675 2.238942 TGACATTGTTGACGACAGCT 57.761 45.000 3.32 0.00 39.94 4.24
4315 7676 2.287915 ACTTGACATTGTTGACGACAGC 59.712 45.455 0.00 0.00 39.94 4.40
4316 7677 3.846023 GCACTTGACATTGTTGACGACAG 60.846 47.826 0.00 0.00 39.94 3.51
4318 7679 2.031560 TGCACTTGACATTGTTGACGAC 59.968 45.455 0.00 0.00 0.00 4.34
4319 7680 2.284190 TGCACTTGACATTGTTGACGA 58.716 42.857 0.00 0.00 0.00 4.20
4321 7682 4.209703 CCATTTGCACTTGACATTGTTGAC 59.790 41.667 0.00 0.00 0.00 3.18
4326 7687 3.061322 CACCCATTTGCACTTGACATTG 58.939 45.455 0.00 0.00 0.00 2.82
4328 7689 1.619827 CCACCCATTTGCACTTGACAT 59.380 47.619 0.00 0.00 0.00 3.06
4330 7691 1.039856 ACCACCCATTTGCACTTGAC 58.960 50.000 0.00 0.00 0.00 3.18
4332 7693 2.613133 CAAAACCACCCATTTGCACTTG 59.387 45.455 0.00 0.00 30.62 3.16
4333 7694 2.421248 CCAAAACCACCCATTTGCACTT 60.421 45.455 0.00 0.00 35.66 3.16
4334 7695 1.140652 CCAAAACCACCCATTTGCACT 59.859 47.619 0.00 0.00 35.66 4.40
4338 7699 1.592064 GTGCCAAAACCACCCATTTG 58.408 50.000 0.00 0.00 36.52 2.32
4339 7700 0.472044 GGTGCCAAAACCACCCATTT 59.528 50.000 0.00 0.00 45.51 2.32
4341 7702 3.884318 GGTGCCAAAACCACCCAT 58.116 55.556 0.00 0.00 45.51 4.00
4345 7706 0.755327 ACCAGAGGTGCCAAAACCAC 60.755 55.000 0.00 0.00 43.20 4.16
4346 7707 0.032615 AACCAGAGGTGCCAAAACCA 60.033 50.000 0.00 0.00 43.20 3.67
4348 7709 1.067060 GACAACCAGAGGTGCCAAAAC 59.933 52.381 0.00 0.00 35.34 2.43
4349 7710 1.398692 GACAACCAGAGGTGCCAAAA 58.601 50.000 0.00 0.00 35.34 2.44
4350 7711 0.817634 CGACAACCAGAGGTGCCAAA 60.818 55.000 0.00 0.00 35.34 3.28
4351 7712 1.227823 CGACAACCAGAGGTGCCAA 60.228 57.895 0.00 0.00 35.34 4.52
4352 7713 1.691195 TTCGACAACCAGAGGTGCCA 61.691 55.000 0.00 0.00 35.34 4.92
4354 7715 1.464997 GAATTCGACAACCAGAGGTGC 59.535 52.381 0.00 0.00 35.34 5.01
4356 7717 3.007940 TGATGAATTCGACAACCAGAGGT 59.992 43.478 0.04 0.00 37.65 3.85
4357 7718 3.599343 TGATGAATTCGACAACCAGAGG 58.401 45.455 0.04 0.00 0.00 3.69
4358 7719 4.034858 CCATGATGAATTCGACAACCAGAG 59.965 45.833 0.04 0.00 0.00 3.35
4359 7720 3.940852 CCATGATGAATTCGACAACCAGA 59.059 43.478 0.04 0.00 0.00 3.86
4360 7721 3.065786 CCCATGATGAATTCGACAACCAG 59.934 47.826 0.04 0.00 0.00 4.00
4361 7722 3.016031 CCCATGATGAATTCGACAACCA 58.984 45.455 0.04 0.00 0.00 3.67
4362 7723 3.016736 ACCCATGATGAATTCGACAACC 58.983 45.455 0.04 0.00 0.00 3.77
4363 7724 3.689161 TGACCCATGATGAATTCGACAAC 59.311 43.478 0.04 0.00 0.00 3.32
4364 7725 3.949132 TGACCCATGATGAATTCGACAA 58.051 40.909 0.04 0.00 0.00 3.18
4365 7726 3.625649 TGACCCATGATGAATTCGACA 57.374 42.857 0.04 4.02 0.00 4.35
4366 7727 4.023707 GGAATGACCCATGATGAATTCGAC 60.024 45.833 0.04 0.00 0.00 4.20
4367 7728 4.136796 GGAATGACCCATGATGAATTCGA 58.863 43.478 0.04 0.00 0.00 3.71
4368 7729 4.139786 AGGAATGACCCATGATGAATTCG 58.860 43.478 0.04 0.00 40.05 3.34
4369 7730 7.120873 CAGATAGGAATGACCCATGATGAATTC 59.879 40.741 0.00 0.00 40.05 2.17
4370 7731 6.946583 CAGATAGGAATGACCCATGATGAATT 59.053 38.462 0.00 0.00 40.05 2.17
4371 7732 6.482524 CAGATAGGAATGACCCATGATGAAT 58.517 40.000 0.00 0.00 40.05 2.57
4372 7733 5.221986 CCAGATAGGAATGACCCATGATGAA 60.222 44.000 0.00 0.00 41.22 2.57
4373 7734 4.287845 CCAGATAGGAATGACCCATGATGA 59.712 45.833 0.00 0.00 41.22 2.92
4374 7735 4.567116 CCCAGATAGGAATGACCCATGATG 60.567 50.000 0.00 0.00 41.22 3.07
4375 7736 3.590630 CCCAGATAGGAATGACCCATGAT 59.409 47.826 0.00 0.00 41.22 2.45
4376 7737 2.981784 CCCAGATAGGAATGACCCATGA 59.018 50.000 0.00 0.00 41.22 3.07
4377 7738 2.981784 TCCCAGATAGGAATGACCCATG 59.018 50.000 0.00 0.00 41.22 3.66
4378 7739 2.982488 GTCCCAGATAGGAATGACCCAT 59.018 50.000 0.00 0.00 41.22 4.00
4379 7740 2.408565 GTCCCAGATAGGAATGACCCA 58.591 52.381 0.00 0.00 41.22 4.51
4380 7741 1.700186 GGTCCCAGATAGGAATGACCC 59.300 57.143 0.00 0.00 39.21 4.46
4381 7742 2.408565 TGGTCCCAGATAGGAATGACC 58.591 52.381 0.00 0.00 43.06 4.02
4382 7743 4.103153 TGAATGGTCCCAGATAGGAATGAC 59.897 45.833 0.00 0.00 41.22 3.06
4383 7744 4.306391 TGAATGGTCCCAGATAGGAATGA 58.694 43.478 0.00 0.00 41.22 2.57
4384 7745 4.712051 TGAATGGTCCCAGATAGGAATG 57.288 45.455 0.00 0.00 41.22 2.67
4385 7746 4.728860 AGTTGAATGGTCCCAGATAGGAAT 59.271 41.667 0.00 0.00 41.22 3.01
4386 7747 4.080356 CAGTTGAATGGTCCCAGATAGGAA 60.080 45.833 0.00 0.00 41.22 3.36
4387 7748 3.455910 CAGTTGAATGGTCCCAGATAGGA 59.544 47.826 0.00 0.00 41.22 2.94
4388 7749 3.434167 CCAGTTGAATGGTCCCAGATAGG 60.434 52.174 0.00 0.00 35.47 2.57
4389 7750 3.434167 CCCAGTTGAATGGTCCCAGATAG 60.434 52.174 0.00 0.00 38.81 2.08
4390 7751 2.509548 CCCAGTTGAATGGTCCCAGATA 59.490 50.000 0.00 0.00 38.81 1.98
4391 7752 1.285962 CCCAGTTGAATGGTCCCAGAT 59.714 52.381 0.00 0.00 38.81 2.90
4392 7753 0.698238 CCCAGTTGAATGGTCCCAGA 59.302 55.000 0.00 0.00 38.81 3.86
4393 7754 0.405585 ACCCAGTTGAATGGTCCCAG 59.594 55.000 0.00 0.00 38.81 4.45
4394 7755 0.112218 CACCCAGTTGAATGGTCCCA 59.888 55.000 0.00 0.00 38.81 4.37
4397 7758 1.995376 AACCACCCAGTTGAATGGTC 58.005 50.000 7.45 0.00 44.80 4.02
4421 8558 1.230212 GGAGCCCCCAATAACCCTG 59.770 63.158 0.00 0.00 34.14 4.45
4466 8603 4.283678 TGTCTTTTTACGTTCCATTTGCG 58.716 39.130 0.00 0.00 0.00 4.85
4472 8609 5.529430 ACATGACATGTCTTTTTACGTTCCA 59.471 36.000 25.55 2.51 39.92 3.53
4497 8638 7.462331 GCGAGAATTGATGAAACATTGTTGATG 60.462 37.037 2.13 0.00 41.71 3.07
4498 8639 6.529125 GCGAGAATTGATGAAACATTGTTGAT 59.471 34.615 2.13 0.00 0.00 2.57
4501 8642 5.771469 TGCGAGAATTGATGAAACATTGTT 58.229 33.333 0.00 0.00 0.00 2.83
4568 8712 8.114359 TGTCGAAAGAAATGTTTTTCATTGAC 57.886 30.769 12.79 12.79 44.85 3.18
4569 8713 7.043458 GCTGTCGAAAGAAATGTTTTTCATTGA 60.043 33.333 6.84 0.00 44.85 2.57
4570 8714 7.059212 GCTGTCGAAAGAAATGTTTTTCATTG 58.941 34.615 6.84 0.00 44.85 2.82
4573 8717 5.645624 TGCTGTCGAAAGAAATGTTTTTCA 58.354 33.333 6.84 0.00 43.09 2.69
4578 8723 3.983344 GCAATGCTGTCGAAAGAAATGTT 59.017 39.130 6.84 0.00 45.01 2.71
4711 8856 4.091424 GTCTATGCGTTTTGACTTGATGC 58.909 43.478 0.00 0.00 0.00 3.91
4725 8870 2.351726 GGGCTTGTAGTTTGTCTATGCG 59.648 50.000 0.00 0.00 0.00 4.73
4776 8921 3.737972 GCCCTGTGAAAAACTTCAGGTTG 60.738 47.826 8.83 0.00 43.96 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.