Multiple sequence alignment - TraesCS6A01G313000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G313000 chr6A 100.000 3556 0 0 964 4519 549540417 549536862 0.000000e+00 6567.0
1 TraesCS6A01G313000 chr6A 100.000 555 0 0 1 555 549541380 549540826 0.000000e+00 1026.0
2 TraesCS6A01G313000 chr6A 86.316 190 14 5 4191 4380 417635646 417635469 3.570000e-46 196.0
3 TraesCS6A01G313000 chr6A 92.366 131 4 3 387 516 156774675 156774550 9.990000e-42 182.0
4 TraesCS6A01G313000 chr6A 92.000 125 6 2 396 516 166656828 166656952 6.010000e-39 172.0
5 TraesCS6A01G313000 chr6D 96.047 2985 108 3 1425 4403 403067210 403064230 0.000000e+00 4850.0
6 TraesCS6A01G313000 chr6D 94.795 365 18 1 1062 1425 403067630 403067266 6.560000e-158 568.0
7 TraesCS6A01G313000 chr6D 92.941 255 16 2 1 254 460076759 460076506 1.990000e-98 370.0
8 TraesCS6A01G313000 chr6D 86.224 196 15 5 4185 4380 299894448 299894631 7.670000e-48 202.0
9 TraesCS6A01G313000 chr6D 93.966 116 7 0 4404 4519 69849200 69849085 4.650000e-40 176.0
10 TraesCS6A01G313000 chr6D 87.705 122 14 1 275 395 403067749 403067628 1.690000e-29 141.0
11 TraesCS6A01G313000 chr6D 91.209 91 8 0 964 1054 197193425 197193515 1.710000e-24 124.0
12 TraesCS6A01G313000 chr6D 91.304 92 6 2 964 1054 454746098 454746188 1.710000e-24 124.0
13 TraesCS6A01G313000 chr6B 94.248 1217 68 2 2380 3594 604109156 604107940 0.000000e+00 1858.0
14 TraesCS6A01G313000 chr6B 95.511 958 34 1 1425 2382 604110227 604109279 0.000000e+00 1522.0
15 TraesCS6A01G313000 chr6B 82.762 1781 222 40 1947 3705 603912502 603910785 0.000000e+00 1509.0
16 TraesCS6A01G313000 chr6B 90.930 882 41 9 3634 4515 604077818 604076976 0.000000e+00 1149.0
17 TraesCS6A01G313000 chr6B 82.317 656 80 20 1426 2072 603913332 603912704 1.850000e-148 536.0
18 TraesCS6A01G313000 chr6B 95.041 242 9 3 1187 1425 604110524 604110283 1.190000e-100 377.0
19 TraesCS6A01G313000 chr6B 80.749 374 62 7 1064 1428 603913758 603913386 2.660000e-72 283.0
20 TraesCS6A01G313000 chr6B 91.791 134 11 0 1944 2077 603912571 603912438 2.150000e-43 187.0
21 TraesCS6A01G313000 chr6B 84.184 196 18 6 4185 4380 464914224 464914406 1.290000e-40 178.0
22 TraesCS6A01G313000 chr6B 90.076 131 13 0 1947 2077 603912634 603912504 2.160000e-38 171.0
23 TraesCS6A01G313000 chr6B 89.552 134 14 0 1944 2077 603912703 603912570 2.160000e-38 171.0
24 TraesCS6A01G313000 chr6B 88.550 131 12 1 1947 2077 603912763 603912636 6.050000e-34 156.0
25 TraesCS6A01G313000 chr6B 94.030 67 4 0 1947 2013 603912436 603912370 8.000000e-18 102.0
26 TraesCS6A01G313000 chr6B 91.429 70 6 0 2010 2079 604109717 604109648 3.720000e-16 97.1
27 TraesCS6A01G313000 chr5A 94.821 251 13 0 1 251 548682028 548682278 4.240000e-105 392.0
28 TraesCS6A01G313000 chr5A 95.041 121 5 1 396 516 502667724 502667843 5.970000e-44 189.0
29 TraesCS6A01G313000 chr5A 93.496 123 5 2 394 516 636670600 636670719 3.590000e-41 180.0
30 TraesCS6A01G313000 chr5A 91.209 91 8 0 964 1054 636670666 636670756 1.710000e-24 124.0
31 TraesCS6A01G313000 chr3A 94.800 250 13 0 1 250 424055781 424055532 1.520000e-104 390.0
32 TraesCS6A01G313000 chr3A 93.220 118 8 0 4402 4519 517330385 517330268 1.670000e-39 174.0
33 TraesCS6A01G313000 chr3A 92.063 126 7 1 394 516 605252369 605252494 1.670000e-39 174.0
34 TraesCS6A01G313000 chr3A 91.870 123 8 2 394 516 734746599 734746479 2.160000e-38 171.0
35 TraesCS6A01G313000 chr3A 93.478 92 4 2 964 1054 128292942 128293032 7.890000e-28 135.0
36 TraesCS6A01G313000 chr3A 90.110 91 9 0 964 1054 605252441 605252531 7.940000e-23 119.0
37 TraesCS6A01G313000 chr4A 94.141 256 14 1 1 256 164443520 164443266 5.480000e-104 388.0
38 TraesCS6A01G313000 chr1D 94.400 250 14 0 1 250 193407370 193407619 7.090000e-103 385.0
39 TraesCS6A01G313000 chr1D 94.737 38 0 1 518 555 49358966 49359001 1.760000e-04 58.4
40 TraesCS6A01G313000 chr2D 93.103 261 15 3 1 260 160020682 160020424 3.300000e-101 379.0
41 TraesCS6A01G313000 chr2D 93.966 116 7 0 4404 4519 336511134 336511249 4.650000e-40 176.0
42 TraesCS6A01G313000 chrUn 93.227 251 16 1 1 251 8100242 8100491 7.140000e-98 368.0
43 TraesCS6A01G313000 chrUn 97.059 34 1 0 522 555 91673808 91673775 1.760000e-04 58.4
44 TraesCS6A01G313000 chr7D 93.227 251 16 1 1 251 136939995 136940244 7.140000e-98 368.0
45 TraesCS6A01G313000 chr7D 91.406 128 8 3 390 516 393594100 393594225 6.010000e-39 172.0
46 TraesCS6A01G313000 chr7D 94.595 37 0 1 519 555 236841446 236841480 6.320000e-04 56.5
47 TraesCS6A01G313000 chr7D 94.595 37 1 1 519 555 393594104 393594139 6.320000e-04 56.5
48 TraesCS6A01G313000 chr5B 92.829 251 17 1 1 251 430376834 430376585 3.320000e-96 363.0
49 TraesCS6A01G313000 chr5B 92.623 122 8 1 4399 4519 498886151 498886030 1.670000e-39 174.0
50 TraesCS6A01G313000 chr3B 77.818 559 97 23 2584 3134 153929212 153928673 2.030000e-83 320.0
51 TraesCS6A01G313000 chr2A 93.443 122 7 1 396 516 637849318 637849197 3.590000e-41 180.0
52 TraesCS6A01G313000 chr2A 92.742 124 7 2 4396 4518 608605382 608605504 1.290000e-40 178.0
53 TraesCS6A01G313000 chr2A 91.736 121 6 3 396 516 96614942 96615058 1.010000e-36 165.0
54 TraesCS6A01G313000 chr1A 92.742 124 8 1 4397 4519 564757346 564757223 1.290000e-40 178.0
55 TraesCS6A01G313000 chr1A 93.966 116 7 0 4404 4519 71070595 71070710 4.650000e-40 176.0
56 TraesCS6A01G313000 chr1A 91.209 91 8 0 964 1054 496158551 496158461 1.710000e-24 124.0
57 TraesCS6A01G313000 chr4B 93.966 116 7 0 4404 4519 178081264 178081149 4.650000e-40 176.0
58 TraesCS6A01G313000 chr2B 92.308 91 7 0 964 1054 691282245 691282155 3.670000e-26 130.0
59 TraesCS6A01G313000 chr2B 94.737 38 0 1 518 555 83212623 83212658 1.760000e-04 58.4
60 TraesCS6A01G313000 chr4D 91.209 91 8 0 964 1054 36583480 36583390 1.710000e-24 124.0
61 TraesCS6A01G313000 chr4D 90.110 91 9 0 964 1054 485141426 485141516 7.940000e-23 119.0
62 TraesCS6A01G313000 chr3D 93.182 44 3 0 1852 1895 317199904 317199947 1.050000e-06 65.8
63 TraesCS6A01G313000 chr3D 97.297 37 0 1 519 555 469805279 469805314 1.360000e-05 62.1
64 TraesCS6A01G313000 chr7B 100.000 32 0 0 524 555 210796412 210796443 4.880000e-05 60.2
65 TraesCS6A01G313000 chr7A 100.000 30 0 0 526 555 726214567 726214538 6.320000e-04 56.5
66 TraesCS6A01G313000 chr5D 100.000 30 0 0 526 555 51064858 51064829 6.320000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G313000 chr6A 549536862 549541380 4518 True 3796.500 6567 100.000000 1 4519 2 chr6A.!!$R3 4518
1 TraesCS6A01G313000 chr6D 403064230 403067749 3519 True 1853.000 4850 92.849000 275 4403 3 chr6D.!!$R3 4128
2 TraesCS6A01G313000 chr6B 604076976 604077818 842 True 1149.000 1149 90.930000 3634 4515 1 chr6B.!!$R1 881
3 TraesCS6A01G313000 chr6B 604107940 604110524 2584 True 963.525 1858 94.057250 1187 3594 4 chr6B.!!$R3 2407
4 TraesCS6A01G313000 chr6B 603910785 603913758 2973 True 389.375 1509 87.478375 1064 3705 8 chr6B.!!$R2 2641
5 TraesCS6A01G313000 chr3B 153928673 153929212 539 True 320.000 320 77.818000 2584 3134 1 chr3B.!!$R1 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
517 518 0.033208 TCACAGGGCAAATCATCCCC 60.033 55.000 0.0 0.0 43.67 4.81 F
1906 1970 0.035317 ATGCAGGAGTGTGAAGCGAA 59.965 50.000 0.0 0.0 0.00 4.70 F
2099 2499 1.644509 TGCAGGATGAGGTACACACT 58.355 50.000 0.0 0.0 39.69 3.55 F
3019 3555 1.065199 TGGGAAGCTCGAATTGCAGAT 60.065 47.619 0.0 0.0 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2093 2493 0.178767 TCAGCAGCTTGACAGTGTGT 59.821 50.000 0.0 0.0 0.00 3.72 R
3019 3555 1.118838 CAAAAGGGTGCCAGTTTGGA 58.881 50.000 0.0 0.0 40.96 3.53 R
3480 4021 3.129988 ACGAAGACCCAACTAATCTACCG 59.870 47.826 0.0 0.0 0.00 4.02 R
4052 4605 5.105635 CCTTCTGAAATATTGCTGGCTGAAA 60.106 40.000 0.8 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.733709 CCAAGGAAGCTGGAGTTGT 57.266 52.632 0.00 0.00 35.85 3.32
19 20 1.986882 CCAAGGAAGCTGGAGTTGTT 58.013 50.000 0.00 0.00 35.85 2.83
20 21 1.610522 CCAAGGAAGCTGGAGTTGTTG 59.389 52.381 0.00 0.00 35.85 3.33
21 22 2.301346 CAAGGAAGCTGGAGTTGTTGT 58.699 47.619 0.00 0.00 0.00 3.32
22 23 2.689983 CAAGGAAGCTGGAGTTGTTGTT 59.310 45.455 0.00 0.00 0.00 2.83
23 24 2.576615 AGGAAGCTGGAGTTGTTGTTC 58.423 47.619 0.00 0.00 0.00 3.18
24 25 2.173569 AGGAAGCTGGAGTTGTTGTTCT 59.826 45.455 0.00 0.00 0.00 3.01
25 26 2.952310 GGAAGCTGGAGTTGTTGTTCTT 59.048 45.455 0.00 0.00 0.00 2.52
26 27 3.003793 GGAAGCTGGAGTTGTTGTTCTTC 59.996 47.826 0.00 0.00 0.00 2.87
27 28 2.213499 AGCTGGAGTTGTTGTTCTTCG 58.787 47.619 0.00 0.00 0.00 3.79
28 29 1.264288 GCTGGAGTTGTTGTTCTTCGG 59.736 52.381 0.00 0.00 0.00 4.30
29 30 2.833794 CTGGAGTTGTTGTTCTTCGGA 58.166 47.619 0.00 0.00 0.00 4.55
30 31 2.802816 CTGGAGTTGTTGTTCTTCGGAG 59.197 50.000 0.00 0.00 0.00 4.63
31 32 2.143925 GGAGTTGTTGTTCTTCGGAGG 58.856 52.381 0.00 0.00 0.00 4.30
32 33 2.484947 GGAGTTGTTGTTCTTCGGAGGT 60.485 50.000 0.00 0.00 0.00 3.85
33 34 2.801111 GAGTTGTTGTTCTTCGGAGGTC 59.199 50.000 0.00 0.00 0.00 3.85
34 35 2.434702 AGTTGTTGTTCTTCGGAGGTCT 59.565 45.455 0.00 0.00 0.00 3.85
35 36 3.118371 AGTTGTTGTTCTTCGGAGGTCTT 60.118 43.478 0.00 0.00 0.00 3.01
36 37 3.107642 TGTTGTTCTTCGGAGGTCTTC 57.892 47.619 0.00 0.00 0.00 2.87
37 38 2.432874 TGTTGTTCTTCGGAGGTCTTCA 59.567 45.455 0.00 0.00 0.00 3.02
38 39 3.060602 GTTGTTCTTCGGAGGTCTTCAG 58.939 50.000 0.00 0.00 0.00 3.02
39 40 2.317040 TGTTCTTCGGAGGTCTTCAGT 58.683 47.619 0.00 0.00 0.00 3.41
40 41 2.035961 TGTTCTTCGGAGGTCTTCAGTG 59.964 50.000 0.00 0.00 0.00 3.66
41 42 1.996798 TCTTCGGAGGTCTTCAGTGT 58.003 50.000 0.00 0.00 0.00 3.55
42 43 1.887198 TCTTCGGAGGTCTTCAGTGTC 59.113 52.381 0.00 0.00 0.00 3.67
43 44 0.596577 TTCGGAGGTCTTCAGTGTCG 59.403 55.000 0.00 0.00 0.00 4.35
44 45 1.213013 CGGAGGTCTTCAGTGTCGG 59.787 63.158 0.00 0.00 0.00 4.79
45 46 1.079750 GGAGGTCTTCAGTGTCGGC 60.080 63.158 0.00 0.00 0.00 5.54
46 47 1.079750 GAGGTCTTCAGTGTCGGCC 60.080 63.158 0.00 0.00 0.00 6.13
47 48 2.432628 GGTCTTCAGTGTCGGCCG 60.433 66.667 22.12 22.12 0.00 6.13
48 49 2.649034 GTCTTCAGTGTCGGCCGA 59.351 61.111 27.28 27.28 0.00 5.54
49 50 1.444553 GTCTTCAGTGTCGGCCGAG 60.445 63.158 31.97 17.70 0.00 4.63
50 51 1.602605 TCTTCAGTGTCGGCCGAGA 60.603 57.895 31.97 27.26 0.00 4.04
51 52 1.444553 CTTCAGTGTCGGCCGAGAC 60.445 63.158 39.89 39.89 41.30 3.36
52 53 3.263503 TTCAGTGTCGGCCGAGACG 62.264 63.158 39.53 33.45 42.34 4.18
64 65 4.699522 GAGACGCGGCAAGGGGTT 62.700 66.667 17.71 0.00 37.07 4.11
65 66 4.699522 AGACGCGGCAAGGGGTTC 62.700 66.667 17.71 0.00 37.07 3.62
69 70 3.508840 GCGGCAAGGGGTTCGATG 61.509 66.667 0.00 0.00 0.00 3.84
70 71 2.046314 CGGCAAGGGGTTCGATGT 60.046 61.111 0.00 0.00 0.00 3.06
71 72 1.219664 CGGCAAGGGGTTCGATGTA 59.780 57.895 0.00 0.00 0.00 2.29
72 73 0.810031 CGGCAAGGGGTTCGATGTAG 60.810 60.000 0.00 0.00 0.00 2.74
73 74 0.463833 GGCAAGGGGTTCGATGTAGG 60.464 60.000 0.00 0.00 0.00 3.18
74 75 0.463833 GCAAGGGGTTCGATGTAGGG 60.464 60.000 0.00 0.00 0.00 3.53
75 76 0.909623 CAAGGGGTTCGATGTAGGGT 59.090 55.000 0.00 0.00 0.00 4.34
76 77 2.112998 CAAGGGGTTCGATGTAGGGTA 58.887 52.381 0.00 0.00 0.00 3.69
77 78 2.083628 AGGGGTTCGATGTAGGGTAG 57.916 55.000 0.00 0.00 0.00 3.18
78 79 1.046204 GGGGTTCGATGTAGGGTAGG 58.954 60.000 0.00 0.00 0.00 3.18
79 80 0.391966 GGGTTCGATGTAGGGTAGGC 59.608 60.000 0.00 0.00 0.00 3.93
80 81 1.411041 GGTTCGATGTAGGGTAGGCT 58.589 55.000 0.00 0.00 0.00 4.58
81 82 1.761198 GGTTCGATGTAGGGTAGGCTT 59.239 52.381 0.00 0.00 0.00 4.35
82 83 2.169978 GGTTCGATGTAGGGTAGGCTTT 59.830 50.000 0.00 0.00 0.00 3.51
83 84 3.370209 GGTTCGATGTAGGGTAGGCTTTT 60.370 47.826 0.00 0.00 0.00 2.27
84 85 4.259356 GTTCGATGTAGGGTAGGCTTTTT 58.741 43.478 0.00 0.00 0.00 1.94
85 86 3.869065 TCGATGTAGGGTAGGCTTTTTG 58.131 45.455 0.00 0.00 0.00 2.44
86 87 3.262405 TCGATGTAGGGTAGGCTTTTTGT 59.738 43.478 0.00 0.00 0.00 2.83
87 88 3.374058 CGATGTAGGGTAGGCTTTTTGTG 59.626 47.826 0.00 0.00 0.00 3.33
88 89 3.868619 TGTAGGGTAGGCTTTTTGTGT 57.131 42.857 0.00 0.00 0.00 3.72
89 90 3.746940 TGTAGGGTAGGCTTTTTGTGTC 58.253 45.455 0.00 0.00 0.00 3.67
90 91 1.892209 AGGGTAGGCTTTTTGTGTCG 58.108 50.000 0.00 0.00 0.00 4.35
91 92 1.142262 AGGGTAGGCTTTTTGTGTCGT 59.858 47.619 0.00 0.00 0.00 4.34
92 93 2.369532 AGGGTAGGCTTTTTGTGTCGTA 59.630 45.455 0.00 0.00 0.00 3.43
93 94 2.740447 GGGTAGGCTTTTTGTGTCGTAG 59.260 50.000 0.00 0.00 0.00 3.51
94 95 3.396560 GGTAGGCTTTTTGTGTCGTAGT 58.603 45.455 0.00 0.00 0.00 2.73
95 96 3.811497 GGTAGGCTTTTTGTGTCGTAGTT 59.189 43.478 0.00 0.00 0.00 2.24
96 97 3.963383 AGGCTTTTTGTGTCGTAGTTG 57.037 42.857 0.00 0.00 0.00 3.16
97 98 3.275999 AGGCTTTTTGTGTCGTAGTTGT 58.724 40.909 0.00 0.00 0.00 3.32
98 99 3.064820 AGGCTTTTTGTGTCGTAGTTGTG 59.935 43.478 0.00 0.00 0.00 3.33
99 100 3.181504 GGCTTTTTGTGTCGTAGTTGTGT 60.182 43.478 0.00 0.00 0.00 3.72
100 101 4.408694 GCTTTTTGTGTCGTAGTTGTGTT 58.591 39.130 0.00 0.00 0.00 3.32
101 102 4.262045 GCTTTTTGTGTCGTAGTTGTGTTG 59.738 41.667 0.00 0.00 0.00 3.33
102 103 5.359716 TTTTTGTGTCGTAGTTGTGTTGT 57.640 34.783 0.00 0.00 0.00 3.32
103 104 4.587211 TTTGTGTCGTAGTTGTGTTGTC 57.413 40.909 0.00 0.00 0.00 3.18
104 105 2.186891 TGTGTCGTAGTTGTGTTGTCG 58.813 47.619 0.00 0.00 0.00 4.35
105 106 2.187707 GTGTCGTAGTTGTGTTGTCGT 58.812 47.619 0.00 0.00 0.00 4.34
106 107 2.035176 GTGTCGTAGTTGTGTTGTCGTG 60.035 50.000 0.00 0.00 0.00 4.35
107 108 2.187707 GTCGTAGTTGTGTTGTCGTGT 58.812 47.619 0.00 0.00 0.00 4.49
108 109 2.599973 GTCGTAGTTGTGTTGTCGTGTT 59.400 45.455 0.00 0.00 0.00 3.32
109 110 2.599527 TCGTAGTTGTGTTGTCGTGTTG 59.400 45.455 0.00 0.00 0.00 3.33
110 111 2.346244 CGTAGTTGTGTTGTCGTGTTGT 59.654 45.455 0.00 0.00 0.00 3.32
111 112 3.181528 CGTAGTTGTGTTGTCGTGTTGTT 60.182 43.478 0.00 0.00 0.00 2.83
112 113 3.196007 AGTTGTGTTGTCGTGTTGTTG 57.804 42.857 0.00 0.00 0.00 3.33
113 114 2.550606 AGTTGTGTTGTCGTGTTGTTGT 59.449 40.909 0.00 0.00 0.00 3.32
114 115 3.747010 AGTTGTGTTGTCGTGTTGTTGTA 59.253 39.130 0.00 0.00 0.00 2.41
115 116 4.393680 AGTTGTGTTGTCGTGTTGTTGTAT 59.606 37.500 0.00 0.00 0.00 2.29
116 117 4.948608 TGTGTTGTCGTGTTGTTGTATT 57.051 36.364 0.00 0.00 0.00 1.89
117 118 5.298197 TGTGTTGTCGTGTTGTTGTATTT 57.702 34.783 0.00 0.00 0.00 1.40
118 119 5.089411 TGTGTTGTCGTGTTGTTGTATTTG 58.911 37.500 0.00 0.00 0.00 2.32
119 120 4.497608 GTGTTGTCGTGTTGTTGTATTTGG 59.502 41.667 0.00 0.00 0.00 3.28
120 121 4.156190 TGTTGTCGTGTTGTTGTATTTGGT 59.844 37.500 0.00 0.00 0.00 3.67
121 122 4.539509 TGTCGTGTTGTTGTATTTGGTC 57.460 40.909 0.00 0.00 0.00 4.02
122 123 3.001431 TGTCGTGTTGTTGTATTTGGTCG 59.999 43.478 0.00 0.00 0.00 4.79
123 124 3.001533 GTCGTGTTGTTGTATTTGGTCGT 59.998 43.478 0.00 0.00 0.00 4.34
124 125 3.245754 TCGTGTTGTTGTATTTGGTCGTC 59.754 43.478 0.00 0.00 0.00 4.20
125 126 3.605231 CGTGTTGTTGTATTTGGTCGTCC 60.605 47.826 0.00 0.00 0.00 4.79
126 127 3.562557 GTGTTGTTGTATTTGGTCGTCCT 59.437 43.478 0.00 0.00 34.23 3.85
127 128 4.035909 GTGTTGTTGTATTTGGTCGTCCTT 59.964 41.667 0.00 0.00 34.23 3.36
128 129 4.035792 TGTTGTTGTATTTGGTCGTCCTTG 59.964 41.667 0.00 0.00 34.23 3.61
129 130 3.811083 TGTTGTATTTGGTCGTCCTTGT 58.189 40.909 0.00 0.00 34.23 3.16
130 131 4.958509 TGTTGTATTTGGTCGTCCTTGTA 58.041 39.130 0.00 0.00 34.23 2.41
131 132 4.751098 TGTTGTATTTGGTCGTCCTTGTAC 59.249 41.667 0.00 1.46 34.23 2.90
132 133 3.577667 TGTATTTGGTCGTCCTTGTACG 58.422 45.455 0.00 0.00 44.19 3.67
138 139 2.100846 TCGTCCTTGTACGATCCGG 58.899 57.895 0.00 0.00 46.29 5.14
139 140 1.065273 CGTCCTTGTACGATCCGGG 59.935 63.158 0.00 0.00 45.68 5.73
140 141 1.660560 CGTCCTTGTACGATCCGGGT 61.661 60.000 0.00 0.00 45.68 5.28
141 142 0.179119 GTCCTTGTACGATCCGGGTG 60.179 60.000 0.00 0.00 0.00 4.61
142 143 0.612732 TCCTTGTACGATCCGGGTGT 60.613 55.000 0.00 0.00 0.00 4.16
143 144 0.459585 CCTTGTACGATCCGGGTGTG 60.460 60.000 0.00 0.00 0.00 3.82
144 145 0.459585 CTTGTACGATCCGGGTGTGG 60.460 60.000 0.00 0.00 0.00 4.17
145 146 0.899253 TTGTACGATCCGGGTGTGGA 60.899 55.000 0.00 0.00 43.58 4.02
146 147 1.317431 TGTACGATCCGGGTGTGGAG 61.317 60.000 0.00 0.00 42.45 3.86
147 148 1.000521 TACGATCCGGGTGTGGAGT 60.001 57.895 0.00 0.00 42.45 3.85
148 149 1.317431 TACGATCCGGGTGTGGAGTG 61.317 60.000 0.00 0.00 42.45 3.51
149 150 2.584608 GATCCGGGTGTGGAGTGG 59.415 66.667 0.00 0.00 42.45 4.00
150 151 3.009115 ATCCGGGTGTGGAGTGGG 61.009 66.667 0.00 0.00 42.45 4.61
151 152 3.864983 ATCCGGGTGTGGAGTGGGT 62.865 63.158 0.00 0.00 42.45 4.51
152 153 4.016706 CCGGGTGTGGAGTGGGTC 62.017 72.222 0.00 0.00 0.00 4.46
153 154 4.373116 CGGGTGTGGAGTGGGTCG 62.373 72.222 0.00 0.00 0.00 4.79
154 155 4.699522 GGGTGTGGAGTGGGTCGC 62.700 72.222 0.00 0.00 0.00 5.19
155 156 4.699522 GGTGTGGAGTGGGTCGCC 62.700 72.222 0.00 0.00 36.53 5.54
156 157 3.626924 GTGTGGAGTGGGTCGCCT 61.627 66.667 0.00 0.00 36.93 5.52
157 158 2.847234 TGTGGAGTGGGTCGCCTT 60.847 61.111 0.00 0.00 36.93 4.35
158 159 2.047179 GTGGAGTGGGTCGCCTTC 60.047 66.667 0.00 0.00 36.93 3.46
159 160 3.691342 TGGAGTGGGTCGCCTTCG 61.691 66.667 0.00 0.00 36.93 3.79
160 161 3.692406 GGAGTGGGTCGCCTTCGT 61.692 66.667 0.00 0.00 36.96 3.85
161 162 2.342648 GAGTGGGTCGCCTTCGTT 59.657 61.111 0.00 0.00 36.96 3.85
162 163 2.027625 GAGTGGGTCGCCTTCGTTG 61.028 63.158 0.00 0.00 36.96 4.10
163 164 2.280592 GTGGGTCGCCTTCGTTGT 60.281 61.111 0.00 0.00 36.96 3.32
164 165 1.890510 GTGGGTCGCCTTCGTTGTT 60.891 57.895 0.00 0.00 36.96 2.83
165 166 1.595929 TGGGTCGCCTTCGTTGTTC 60.596 57.895 0.00 0.00 36.96 3.18
166 167 2.664436 GGGTCGCCTTCGTTGTTCG 61.664 63.158 0.00 0.00 41.41 3.95
167 168 2.170273 GTCGCCTTCGTTGTTCGC 59.830 61.111 0.00 0.00 39.67 4.70
168 169 2.279584 TCGCCTTCGTTGTTCGCA 60.280 55.556 0.00 0.00 39.67 5.10
169 170 1.883544 TCGCCTTCGTTGTTCGCAA 60.884 52.632 0.00 0.00 39.67 4.85
176 177 4.893241 GTTGTTCGCAACGAGTGG 57.107 55.556 0.00 0.00 46.47 4.00
177 178 2.011453 GTTGTTCGCAACGAGTGGT 58.989 52.632 0.00 0.00 46.47 4.16
178 179 0.375803 GTTGTTCGCAACGAGTGGTT 59.624 50.000 0.00 0.00 46.47 3.67
186 187 3.446507 AACGAGTGGTTGACGTTGT 57.553 47.368 0.00 0.00 45.93 3.32
187 188 1.729284 AACGAGTGGTTGACGTTGTT 58.271 45.000 0.00 0.00 45.93 2.83
188 189 1.003851 ACGAGTGGTTGACGTTGTTG 58.996 50.000 0.00 0.00 36.91 3.33
189 190 1.003851 CGAGTGGTTGACGTTGTTGT 58.996 50.000 0.00 0.00 0.00 3.32
190 191 1.267334 CGAGTGGTTGACGTTGTTGTG 60.267 52.381 0.00 0.00 0.00 3.33
191 192 1.735571 GAGTGGTTGACGTTGTTGTGT 59.264 47.619 0.00 0.00 0.00 3.72
192 193 1.466950 AGTGGTTGACGTTGTTGTGTG 59.533 47.619 0.00 0.00 0.00 3.82
193 194 1.198178 GTGGTTGACGTTGTTGTGTGT 59.802 47.619 0.00 0.00 0.00 3.72
194 195 1.465387 TGGTTGACGTTGTTGTGTGTC 59.535 47.619 0.00 0.00 0.00 3.67
195 196 1.735571 GGTTGACGTTGTTGTGTGTCT 59.264 47.619 0.00 0.00 32.64 3.41
196 197 2.222953 GGTTGACGTTGTTGTGTGTCTC 60.223 50.000 0.00 0.00 32.64 3.36
197 198 2.371910 TGACGTTGTTGTGTGTCTCA 57.628 45.000 0.00 0.00 32.64 3.27
198 199 2.899976 TGACGTTGTTGTGTGTCTCAT 58.100 42.857 0.00 0.00 32.64 2.90
199 200 3.266636 TGACGTTGTTGTGTGTCTCATT 58.733 40.909 0.00 0.00 32.64 2.57
200 201 3.687212 TGACGTTGTTGTGTGTCTCATTT 59.313 39.130 0.00 0.00 32.64 2.32
201 202 4.201773 TGACGTTGTTGTGTGTCTCATTTC 60.202 41.667 0.00 0.00 32.64 2.17
202 203 3.938963 ACGTTGTTGTGTGTCTCATTTCT 59.061 39.130 0.00 0.00 0.00 2.52
203 204 4.034048 ACGTTGTTGTGTGTCTCATTTCTC 59.966 41.667 0.00 0.00 0.00 2.87
204 205 4.271049 CGTTGTTGTGTGTCTCATTTCTCT 59.729 41.667 0.00 0.00 0.00 3.10
205 206 5.220662 CGTTGTTGTGTGTCTCATTTCTCTT 60.221 40.000 0.00 0.00 0.00 2.85
206 207 6.555315 GTTGTTGTGTGTCTCATTTCTCTTT 58.445 36.000 0.00 0.00 0.00 2.52
207 208 6.757897 TGTTGTGTGTCTCATTTCTCTTTT 57.242 33.333 0.00 0.00 0.00 2.27
208 209 7.156876 TGTTGTGTGTCTCATTTCTCTTTTT 57.843 32.000 0.00 0.00 0.00 1.94
209 210 7.250569 TGTTGTGTGTCTCATTTCTCTTTTTC 58.749 34.615 0.00 0.00 0.00 2.29
210 211 7.121168 TGTTGTGTGTCTCATTTCTCTTTTTCT 59.879 33.333 0.00 0.00 0.00 2.52
211 212 8.612619 GTTGTGTGTCTCATTTCTCTTTTTCTA 58.387 33.333 0.00 0.00 0.00 2.10
212 213 8.908786 TGTGTGTCTCATTTCTCTTTTTCTAT 57.091 30.769 0.00 0.00 0.00 1.98
213 214 9.996554 TGTGTGTCTCATTTCTCTTTTTCTATA 57.003 29.630 0.00 0.00 0.00 1.31
226 227 9.798994 TCTCTTTTTCTATAAAGCTAAGGTACG 57.201 33.333 0.00 0.00 35.56 3.67
227 228 8.416485 TCTTTTTCTATAAAGCTAAGGTACGC 57.584 34.615 0.00 0.00 35.56 4.42
228 229 8.036575 TCTTTTTCTATAAAGCTAAGGTACGCA 58.963 33.333 0.00 0.00 35.56 5.24
229 230 8.550710 TTTTTCTATAAAGCTAAGGTACGCAA 57.449 30.769 0.00 0.00 0.00 4.85
230 231 8.726870 TTTTCTATAAAGCTAAGGTACGCAAT 57.273 30.769 0.00 0.00 0.00 3.56
231 232 8.726870 TTTCTATAAAGCTAAGGTACGCAATT 57.273 30.769 0.00 0.00 0.00 2.32
232 233 8.726870 TTCTATAAAGCTAAGGTACGCAATTT 57.273 30.769 0.00 0.00 0.00 1.82
233 234 8.138365 TCTATAAAGCTAAGGTACGCAATTTG 57.862 34.615 0.00 0.00 0.00 2.32
234 235 3.487563 AAGCTAAGGTACGCAATTTGC 57.512 42.857 11.42 11.42 40.69 3.68
246 247 3.398954 GCAATTTGCGTATCCTCGAAA 57.601 42.857 5.49 0.00 31.71 3.46
247 248 3.753842 GCAATTTGCGTATCCTCGAAAA 58.246 40.909 5.49 0.00 41.60 2.29
248 249 4.162812 GCAATTTGCGTATCCTCGAAAAA 58.837 39.130 5.49 0.00 40.89 1.94
271 272 5.776173 AATGTCTTACACTAGATCGGAGG 57.224 43.478 0.00 0.00 0.00 4.30
272 273 4.498894 TGTCTTACACTAGATCGGAGGA 57.501 45.455 0.00 0.00 0.00 3.71
273 274 4.851843 TGTCTTACACTAGATCGGAGGAA 58.148 43.478 0.00 0.00 0.00 3.36
274 275 4.882427 TGTCTTACACTAGATCGGAGGAAG 59.118 45.833 0.00 4.36 0.00 3.46
275 276 4.883006 GTCTTACACTAGATCGGAGGAAGT 59.117 45.833 0.00 5.21 0.00 3.01
276 277 6.054295 GTCTTACACTAGATCGGAGGAAGTA 58.946 44.000 0.00 4.53 0.00 2.24
277 278 6.541641 GTCTTACACTAGATCGGAGGAAGTAA 59.458 42.308 0.00 9.65 0.00 2.24
278 279 7.066766 GTCTTACACTAGATCGGAGGAAGTAAA 59.933 40.741 0.00 3.40 0.00 2.01
279 280 7.613022 TCTTACACTAGATCGGAGGAAGTAAAA 59.387 37.037 0.00 0.00 0.00 1.52
280 281 6.600882 ACACTAGATCGGAGGAAGTAAAAA 57.399 37.500 0.00 0.00 0.00 1.94
281 282 7.184067 ACACTAGATCGGAGGAAGTAAAAAT 57.816 36.000 0.00 0.00 0.00 1.82
282 283 8.302515 ACACTAGATCGGAGGAAGTAAAAATA 57.697 34.615 0.00 0.00 0.00 1.40
283 284 8.755977 ACACTAGATCGGAGGAAGTAAAAATAA 58.244 33.333 0.00 0.00 0.00 1.40
294 295 9.750125 GAGGAAGTAAAAATAATTGCCCATAAG 57.250 33.333 0.00 0.00 0.00 1.73
326 327 2.095252 GTGCGTCTTCTTCCTCGGC 61.095 63.158 0.00 0.00 0.00 5.54
330 331 4.129737 TCTTCTTCCTCGGCCGCG 62.130 66.667 23.51 15.99 0.00 6.46
347 348 2.200092 GCCACCCAAACCCTTCCA 59.800 61.111 0.00 0.00 0.00 3.53
396 397 4.738998 CAGCGGCCCCAACCATGA 62.739 66.667 0.00 0.00 0.00 3.07
397 398 4.431131 AGCGGCCCCAACCATGAG 62.431 66.667 0.00 0.00 0.00 2.90
398 399 4.424711 GCGGCCCCAACCATGAGA 62.425 66.667 0.00 0.00 0.00 3.27
399 400 2.354729 CGGCCCCAACCATGAGAA 59.645 61.111 0.00 0.00 0.00 2.87
400 401 1.304052 CGGCCCCAACCATGAGAAA 60.304 57.895 0.00 0.00 0.00 2.52
401 402 0.684153 CGGCCCCAACCATGAGAAAT 60.684 55.000 0.00 0.00 0.00 2.17
402 403 1.571955 GGCCCCAACCATGAGAAATT 58.428 50.000 0.00 0.00 0.00 1.82
403 404 1.207811 GGCCCCAACCATGAGAAATTG 59.792 52.381 0.00 0.00 0.00 2.32
404 405 2.178580 GCCCCAACCATGAGAAATTGA 58.821 47.619 0.00 0.00 0.00 2.57
405 406 2.566724 GCCCCAACCATGAGAAATTGAA 59.433 45.455 0.00 0.00 0.00 2.69
406 407 3.198417 GCCCCAACCATGAGAAATTGAAT 59.802 43.478 0.00 0.00 0.00 2.57
407 408 4.681512 GCCCCAACCATGAGAAATTGAATC 60.682 45.833 0.00 0.00 0.00 2.52
408 409 4.713321 CCCCAACCATGAGAAATTGAATCT 59.287 41.667 0.00 0.00 0.00 2.40
409 410 5.188359 CCCCAACCATGAGAAATTGAATCTT 59.812 40.000 0.00 0.00 0.00 2.40
410 411 6.296030 CCCCAACCATGAGAAATTGAATCTTT 60.296 38.462 0.00 0.00 0.00 2.52
411 412 7.163441 CCCAACCATGAGAAATTGAATCTTTT 58.837 34.615 0.00 0.00 0.00 2.27
412 413 7.118680 CCCAACCATGAGAAATTGAATCTTTTG 59.881 37.037 0.00 0.00 0.00 2.44
413 414 7.360607 CCAACCATGAGAAATTGAATCTTTTGC 60.361 37.037 0.00 0.00 0.00 3.68
414 415 6.168389 ACCATGAGAAATTGAATCTTTTGCC 58.832 36.000 0.00 0.00 0.00 4.52
415 416 6.013984 ACCATGAGAAATTGAATCTTTTGCCT 60.014 34.615 0.00 0.00 0.00 4.75
416 417 6.534079 CCATGAGAAATTGAATCTTTTGCCTC 59.466 38.462 0.00 0.00 0.00 4.70
417 418 6.653526 TGAGAAATTGAATCTTTTGCCTCA 57.346 33.333 0.00 0.00 0.00 3.86
418 419 6.449698 TGAGAAATTGAATCTTTTGCCTCAC 58.550 36.000 0.00 0.00 0.00 3.51
419 420 6.266103 TGAGAAATTGAATCTTTTGCCTCACT 59.734 34.615 0.00 0.00 0.00 3.41
420 421 7.059202 AGAAATTGAATCTTTTGCCTCACTT 57.941 32.000 0.00 0.00 0.00 3.16
421 422 7.503549 AGAAATTGAATCTTTTGCCTCACTTT 58.496 30.769 0.00 0.00 0.00 2.66
422 423 8.641541 AGAAATTGAATCTTTTGCCTCACTTTA 58.358 29.630 0.00 0.00 0.00 1.85
423 424 8.593492 AAATTGAATCTTTTGCCTCACTTTAC 57.407 30.769 0.00 0.00 0.00 2.01
424 425 6.959639 TTGAATCTTTTGCCTCACTTTACT 57.040 33.333 0.00 0.00 0.00 2.24
425 426 6.959639 TGAATCTTTTGCCTCACTTTACTT 57.040 33.333 0.00 0.00 0.00 2.24
426 427 6.970484 TGAATCTTTTGCCTCACTTTACTTC 58.030 36.000 0.00 0.00 0.00 3.01
427 428 6.772716 TGAATCTTTTGCCTCACTTTACTTCT 59.227 34.615 0.00 0.00 0.00 2.85
428 429 6.809630 ATCTTTTGCCTCACTTTACTTCTC 57.190 37.500 0.00 0.00 0.00 2.87
429 430 5.063880 TCTTTTGCCTCACTTTACTTCTCC 58.936 41.667 0.00 0.00 0.00 3.71
430 431 4.431416 TTTGCCTCACTTTACTTCTCCA 57.569 40.909 0.00 0.00 0.00 3.86
431 432 4.640771 TTGCCTCACTTTACTTCTCCAT 57.359 40.909 0.00 0.00 0.00 3.41
432 433 5.755409 TTGCCTCACTTTACTTCTCCATA 57.245 39.130 0.00 0.00 0.00 2.74
433 434 5.755409 TGCCTCACTTTACTTCTCCATAA 57.245 39.130 0.00 0.00 0.00 1.90
434 435 5.734720 TGCCTCACTTTACTTCTCCATAAG 58.265 41.667 0.00 0.00 0.00 1.73
435 436 5.483937 TGCCTCACTTTACTTCTCCATAAGA 59.516 40.000 0.00 0.00 0.00 2.10
436 437 6.156949 TGCCTCACTTTACTTCTCCATAAGAT 59.843 38.462 0.00 0.00 32.82 2.40
437 438 6.704050 GCCTCACTTTACTTCTCCATAAGATC 59.296 42.308 0.00 0.00 32.82 2.75
438 439 7.633772 GCCTCACTTTACTTCTCCATAAGATCA 60.634 40.741 0.00 0.00 32.82 2.92
439 440 8.428063 CCTCACTTTACTTCTCCATAAGATCAT 58.572 37.037 0.00 0.00 32.82 2.45
440 441 9.829507 CTCACTTTACTTCTCCATAAGATCATT 57.170 33.333 0.00 0.00 32.82 2.57
443 444 8.897752 ACTTTACTTCTCCATAAGATCATTTGC 58.102 33.333 0.00 0.00 32.82 3.68
444 445 7.807977 TTACTTCTCCATAAGATCATTTGCC 57.192 36.000 0.00 0.00 32.82 4.52
445 446 5.136105 ACTTCTCCATAAGATCATTTGCCC 58.864 41.667 0.00 0.00 32.82 5.36
446 447 4.104383 TCTCCATAAGATCATTTGCCCC 57.896 45.455 0.00 0.00 0.00 5.80
447 448 3.160269 CTCCATAAGATCATTTGCCCCC 58.840 50.000 0.00 0.00 0.00 5.40
467 468 4.504112 CCTCTAGAGGCTACCGGG 57.496 66.667 25.73 0.57 42.44 5.73
468 469 1.537669 CCTCTAGAGGCTACCGGGT 59.462 63.158 25.73 4.46 42.44 5.28
469 470 0.824182 CCTCTAGAGGCTACCGGGTG 60.824 65.000 25.73 0.00 42.44 4.61
470 471 0.824182 CTCTAGAGGCTACCGGGTGG 60.824 65.000 12.27 8.30 42.84 4.61
471 472 1.833049 CTAGAGGCTACCGGGTGGG 60.833 68.421 10.66 3.73 40.75 4.61
472 473 3.384555 TAGAGGCTACCGGGTGGGG 62.385 68.421 10.66 1.06 41.60 4.96
489 490 4.052518 GCCTGGGGCCACTGTCAT 62.053 66.667 6.53 0.00 44.06 3.06
490 491 2.765969 CCTGGGGCCACTGTCATT 59.234 61.111 6.53 0.00 0.00 2.57
491 492 1.679977 CCTGGGGCCACTGTCATTG 60.680 63.158 6.53 0.00 0.00 2.82
492 493 1.379916 CTGGGGCCACTGTCATTGA 59.620 57.895 6.53 0.00 0.00 2.57
493 494 0.679002 CTGGGGCCACTGTCATTGAG 60.679 60.000 6.53 0.00 0.00 3.02
494 495 1.133181 TGGGGCCACTGTCATTGAGA 61.133 55.000 6.53 0.00 0.00 3.27
506 507 2.421424 GTCATTGAGACAATCACAGGGC 59.579 50.000 0.00 0.00 46.77 5.19
507 508 2.040145 TCATTGAGACAATCACAGGGCA 59.960 45.455 0.00 0.00 37.77 5.36
508 509 2.655090 TTGAGACAATCACAGGGCAA 57.345 45.000 0.00 0.00 37.77 4.52
509 510 2.655090 TGAGACAATCACAGGGCAAA 57.345 45.000 0.00 0.00 31.12 3.68
510 511 3.159213 TGAGACAATCACAGGGCAAAT 57.841 42.857 0.00 0.00 31.12 2.32
511 512 3.084039 TGAGACAATCACAGGGCAAATC 58.916 45.455 0.00 0.00 31.12 2.17
512 513 3.084039 GAGACAATCACAGGGCAAATCA 58.916 45.455 0.00 0.00 0.00 2.57
513 514 3.698040 GAGACAATCACAGGGCAAATCAT 59.302 43.478 0.00 0.00 0.00 2.45
514 515 3.698040 AGACAATCACAGGGCAAATCATC 59.302 43.478 0.00 0.00 0.00 2.92
515 516 2.762327 ACAATCACAGGGCAAATCATCC 59.238 45.455 0.00 0.00 0.00 3.51
516 517 2.077687 ATCACAGGGCAAATCATCCC 57.922 50.000 0.00 0.00 42.94 3.85
517 518 0.033208 TCACAGGGCAAATCATCCCC 60.033 55.000 0.00 0.00 43.67 4.81
518 519 0.324552 CACAGGGCAAATCATCCCCA 60.325 55.000 0.00 0.00 43.67 4.96
519 520 0.638292 ACAGGGCAAATCATCCCCAT 59.362 50.000 0.00 0.00 43.67 4.00
520 521 1.045407 CAGGGCAAATCATCCCCATG 58.955 55.000 0.00 0.00 43.67 3.66
521 522 0.935942 AGGGCAAATCATCCCCATGA 59.064 50.000 0.00 0.00 43.67 3.07
522 523 1.133262 AGGGCAAATCATCCCCATGAG 60.133 52.381 0.00 0.00 42.53 2.90
523 524 1.133388 GGGCAAATCATCCCCATGAGA 60.133 52.381 0.00 0.00 42.53 3.27
524 525 2.669781 GGCAAATCATCCCCATGAGAA 58.330 47.619 0.00 0.00 42.53 2.87
525 526 3.033184 GGCAAATCATCCCCATGAGAAA 58.967 45.455 0.00 0.00 42.53 2.52
526 527 3.451902 GGCAAATCATCCCCATGAGAAAA 59.548 43.478 0.00 0.00 42.53 2.29
527 528 4.080975 GGCAAATCATCCCCATGAGAAAAA 60.081 41.667 0.00 0.00 42.53 1.94
528 529 5.397109 GGCAAATCATCCCCATGAGAAAAAT 60.397 40.000 0.00 0.00 42.53 1.82
529 530 6.117488 GCAAATCATCCCCATGAGAAAAATT 58.883 36.000 0.00 0.00 42.53 1.82
530 531 6.037830 GCAAATCATCCCCATGAGAAAAATTG 59.962 38.462 0.00 0.00 42.53 2.32
531 532 5.881923 ATCATCCCCATGAGAAAAATTGG 57.118 39.130 0.00 0.00 42.53 3.16
532 533 4.945411 TCATCCCCATGAGAAAAATTGGA 58.055 39.130 0.00 0.00 33.80 3.53
533 534 5.531198 TCATCCCCATGAGAAAAATTGGAT 58.469 37.500 0.00 0.00 33.80 3.41
534 535 5.599656 TCATCCCCATGAGAAAAATTGGATC 59.400 40.000 0.00 0.00 33.80 3.36
535 536 5.211078 TCCCCATGAGAAAAATTGGATCT 57.789 39.130 0.00 0.00 0.00 2.75
536 537 5.592795 TCCCCATGAGAAAAATTGGATCTT 58.407 37.500 0.00 0.00 0.00 2.40
537 538 6.024893 TCCCCATGAGAAAAATTGGATCTTT 58.975 36.000 0.00 0.00 0.00 2.52
538 539 6.501453 TCCCCATGAGAAAAATTGGATCTTTT 59.499 34.615 0.00 0.00 0.00 2.27
539 540 6.596497 CCCCATGAGAAAAATTGGATCTTTTG 59.404 38.462 0.00 0.00 0.00 2.44
540 541 6.093082 CCCATGAGAAAAATTGGATCTTTTGC 59.907 38.462 0.00 0.00 0.00 3.68
541 542 6.093082 CCATGAGAAAAATTGGATCTTTTGCC 59.907 38.462 0.00 0.00 0.00 4.52
542 543 5.550290 TGAGAAAAATTGGATCTTTTGCCC 58.450 37.500 0.00 0.00 0.00 5.36
543 544 4.910195 AGAAAAATTGGATCTTTTGCCCC 58.090 39.130 0.00 0.00 0.00 5.80
544 545 4.350520 AGAAAAATTGGATCTTTTGCCCCA 59.649 37.500 0.00 0.00 0.00 4.96
545 546 3.701205 AAATTGGATCTTTTGCCCCAC 57.299 42.857 0.00 0.00 0.00 4.61
546 547 2.629017 ATTGGATCTTTTGCCCCACT 57.371 45.000 0.00 0.00 0.00 4.00
547 548 2.397044 TTGGATCTTTTGCCCCACTT 57.603 45.000 0.00 0.00 0.00 3.16
548 549 2.397044 TGGATCTTTTGCCCCACTTT 57.603 45.000 0.00 0.00 0.00 2.66
549 550 3.534357 TGGATCTTTTGCCCCACTTTA 57.466 42.857 0.00 0.00 0.00 1.85
550 551 3.161866 TGGATCTTTTGCCCCACTTTAC 58.838 45.455 0.00 0.00 0.00 2.01
551 552 3.181423 TGGATCTTTTGCCCCACTTTACT 60.181 43.478 0.00 0.00 0.00 2.24
552 553 3.832490 GGATCTTTTGCCCCACTTTACTT 59.168 43.478 0.00 0.00 0.00 2.24
553 554 4.082190 GGATCTTTTGCCCCACTTTACTTC 60.082 45.833 0.00 0.00 0.00 3.01
554 555 4.178956 TCTTTTGCCCCACTTTACTTCT 57.821 40.909 0.00 0.00 0.00 2.85
984 985 3.742983 GGATGAGGTCCGAAGTCAC 57.257 57.895 0.00 0.00 37.23 3.67
985 986 1.187087 GGATGAGGTCCGAAGTCACT 58.813 55.000 0.00 0.00 37.23 3.41
986 987 1.134965 GGATGAGGTCCGAAGTCACTG 60.135 57.143 0.00 0.00 37.23 3.66
987 988 1.546476 GATGAGGTCCGAAGTCACTGT 59.454 52.381 0.00 0.00 0.00 3.55
988 989 0.959553 TGAGGTCCGAAGTCACTGTC 59.040 55.000 0.00 0.00 0.00 3.51
989 990 0.959553 GAGGTCCGAAGTCACTGTCA 59.040 55.000 0.00 0.00 0.00 3.58
990 991 1.546476 GAGGTCCGAAGTCACTGTCAT 59.454 52.381 0.00 0.00 0.00 3.06
991 992 1.971357 AGGTCCGAAGTCACTGTCATT 59.029 47.619 0.00 0.00 0.00 2.57
992 993 2.069273 GGTCCGAAGTCACTGTCATTG 58.931 52.381 0.00 0.00 0.00 2.82
993 994 2.288825 GGTCCGAAGTCACTGTCATTGA 60.289 50.000 0.00 0.00 0.00 2.57
994 995 2.989840 GTCCGAAGTCACTGTCATTGAG 59.010 50.000 0.00 0.00 0.00 3.02
995 996 2.890945 TCCGAAGTCACTGTCATTGAGA 59.109 45.455 0.00 0.00 0.00 3.27
1007 1008 4.088823 GTCATTGAGACAATCACAAGGC 57.911 45.455 0.00 0.00 46.77 4.35
1008 1009 3.503363 GTCATTGAGACAATCACAAGGCA 59.497 43.478 0.00 0.00 46.77 4.75
1009 1010 4.022935 GTCATTGAGACAATCACAAGGCAA 60.023 41.667 0.00 0.00 46.77 4.52
1010 1011 4.583907 TCATTGAGACAATCACAAGGCAAA 59.416 37.500 0.00 0.00 37.77 3.68
1011 1012 5.244402 TCATTGAGACAATCACAAGGCAAAT 59.756 36.000 0.00 0.00 37.77 2.32
1012 1013 4.771590 TGAGACAATCACAAGGCAAATC 57.228 40.909 0.00 0.00 31.12 2.17
1013 1014 4.143543 TGAGACAATCACAAGGCAAATCA 58.856 39.130 0.00 0.00 31.12 2.57
1014 1015 4.768448 TGAGACAATCACAAGGCAAATCAT 59.232 37.500 0.00 0.00 31.12 2.45
1015 1016 5.244402 TGAGACAATCACAAGGCAAATCATT 59.756 36.000 0.00 0.00 31.12 2.57
1016 1017 5.717119 AGACAATCACAAGGCAAATCATTC 58.283 37.500 0.00 0.00 0.00 2.67
1017 1018 5.244402 AGACAATCACAAGGCAAATCATTCA 59.756 36.000 0.00 0.00 0.00 2.57
1018 1019 5.856156 ACAATCACAAGGCAAATCATTCAA 58.144 33.333 0.00 0.00 0.00 2.69
1019 1020 5.697633 ACAATCACAAGGCAAATCATTCAAC 59.302 36.000 0.00 0.00 0.00 3.18
1020 1021 4.255833 TCACAAGGCAAATCATTCAACC 57.744 40.909 0.00 0.00 0.00 3.77
1021 1022 3.006752 TCACAAGGCAAATCATTCAACCC 59.993 43.478 0.00 0.00 0.00 4.11
1022 1023 2.302733 ACAAGGCAAATCATTCAACCCC 59.697 45.455 0.00 0.00 0.00 4.95
1023 1024 2.568509 CAAGGCAAATCATTCAACCCCT 59.431 45.455 0.00 0.00 0.00 4.79
1024 1025 2.906568 AGGCAAATCATTCAACCCCTT 58.093 42.857 0.00 0.00 0.00 3.95
1025 1026 2.568509 AGGCAAATCATTCAACCCCTTG 59.431 45.455 0.00 0.00 0.00 3.61
1026 1027 2.302733 GGCAAATCATTCAACCCCTTGT 59.697 45.455 0.00 0.00 0.00 3.16
1027 1028 3.513515 GGCAAATCATTCAACCCCTTGTA 59.486 43.478 0.00 0.00 0.00 2.41
1028 1029 4.020662 GGCAAATCATTCAACCCCTTGTAA 60.021 41.667 0.00 0.00 0.00 2.41
1029 1030 5.512232 GGCAAATCATTCAACCCCTTGTAAA 60.512 40.000 0.00 0.00 0.00 2.01
1030 1031 5.639082 GCAAATCATTCAACCCCTTGTAAAG 59.361 40.000 0.00 0.00 45.69 1.85
1031 1032 6.741240 GCAAATCATTCAACCCCTTGTAAAGT 60.741 38.462 0.00 0.00 44.25 2.66
1032 1033 5.982890 ATCATTCAACCCCTTGTAAAGTG 57.017 39.130 0.00 0.00 44.25 3.16
1034 1035 2.668144 TCAACCCCTTGTAAAGTGGG 57.332 50.000 10.35 10.35 46.66 4.61
1038 1039 3.448469 CCCTTGTAAAGTGGGGCAA 57.552 52.632 0.00 0.00 44.25 4.52
1039 1040 1.710816 CCCTTGTAAAGTGGGGCAAA 58.289 50.000 0.00 0.00 44.25 3.68
1040 1041 2.256306 CCCTTGTAAAGTGGGGCAAAT 58.744 47.619 0.00 0.00 44.25 2.32
1041 1042 2.233676 CCCTTGTAAAGTGGGGCAAATC 59.766 50.000 0.00 0.00 44.25 2.17
1042 1043 2.896685 CCTTGTAAAGTGGGGCAAATCA 59.103 45.455 0.00 0.00 44.25 2.57
1043 1044 3.515104 CCTTGTAAAGTGGGGCAAATCAT 59.485 43.478 0.00 0.00 44.25 2.45
1044 1045 4.381932 CCTTGTAAAGTGGGGCAAATCATC 60.382 45.833 0.00 0.00 44.25 2.92
1045 1046 3.096092 TGTAAAGTGGGGCAAATCATCC 58.904 45.455 0.00 0.00 0.00 3.51
1046 1047 2.323999 AAAGTGGGGCAAATCATCCA 57.676 45.000 0.00 0.00 0.00 3.41
1047 1048 2.323999 AAGTGGGGCAAATCATCCAA 57.676 45.000 0.00 0.00 0.00 3.53
1048 1049 2.555732 AGTGGGGCAAATCATCCAAT 57.444 45.000 0.00 0.00 0.00 3.16
1049 1050 2.391678 AGTGGGGCAAATCATCCAATC 58.608 47.619 0.00 0.00 0.00 2.67
1050 1051 1.413812 GTGGGGCAAATCATCCAATCC 59.586 52.381 0.00 0.00 0.00 3.01
1051 1052 1.051008 GGGGCAAATCATCCAATCCC 58.949 55.000 0.00 0.00 0.00 3.85
1052 1053 1.051008 GGGCAAATCATCCAATCCCC 58.949 55.000 0.00 0.00 0.00 4.81
1053 1054 1.051008 GGCAAATCATCCAATCCCCC 58.949 55.000 0.00 0.00 0.00 5.40
1054 1055 1.692121 GGCAAATCATCCAATCCCCCA 60.692 52.381 0.00 0.00 0.00 4.96
1055 1056 2.117865 GCAAATCATCCAATCCCCCAA 58.882 47.619 0.00 0.00 0.00 4.12
1056 1057 2.158914 GCAAATCATCCAATCCCCCAAC 60.159 50.000 0.00 0.00 0.00 3.77
1057 1058 2.435437 CAAATCATCCAATCCCCCAACC 59.565 50.000 0.00 0.00 0.00 3.77
1058 1059 1.317922 ATCATCCAATCCCCCAACCA 58.682 50.000 0.00 0.00 0.00 3.67
1059 1060 1.088269 TCATCCAATCCCCCAACCAA 58.912 50.000 0.00 0.00 0.00 3.67
1060 1061 1.434773 TCATCCAATCCCCCAACCAAA 59.565 47.619 0.00 0.00 0.00 3.28
1069 1070 1.355720 CCCCCAACCAAACATCTCTCT 59.644 52.381 0.00 0.00 0.00 3.10
1090 1091 4.968719 TCTAATGCATCCTCCACCTTCTTA 59.031 41.667 0.00 0.00 0.00 2.10
1108 1109 1.471119 TACTCGCAATCTCTTCCCGT 58.529 50.000 0.00 0.00 0.00 5.28
1116 1117 3.382832 CTCTTCCCGTGGCCGAGT 61.383 66.667 0.00 0.00 35.63 4.18
1206 1210 4.919770 CCCCCGGGATATCTGGAT 57.080 61.111 26.32 0.00 44.90 3.41
1217 1221 2.689553 TATCTGGATTGCTGCACGAA 57.310 45.000 0.00 0.00 0.00 3.85
1376 1384 4.798682 TCTCCTCGCCCCCTTCCC 62.799 72.222 0.00 0.00 0.00 3.97
1711 1775 1.140652 GCTGAGGAAGGGGATGAGAAG 59.859 57.143 0.00 0.00 0.00 2.85
1724 1788 1.741770 GAGAAGCGATTGGGCGTGT 60.742 57.895 0.00 0.00 38.18 4.49
1839 1903 3.039134 CAGGAAACAACCACCGGC 58.961 61.111 0.00 0.00 0.00 6.13
1906 1970 0.035317 ATGCAGGAGTGTGAAGCGAA 59.965 50.000 0.00 0.00 0.00 4.70
2093 2493 4.922206 AGAAAATGTTGCAGGATGAGGTA 58.078 39.130 0.00 0.00 39.69 3.08
2099 2499 1.644509 TGCAGGATGAGGTACACACT 58.355 50.000 0.00 0.00 39.69 3.55
2262 2662 3.077359 CAGGCTCTGGTTAACAAGGAAG 58.923 50.000 10.18 2.51 0.00 3.46
2567 3095 8.807948 TCCGGAAAAAGATGAAAGATCTAAAT 57.192 30.769 0.00 0.00 0.00 1.40
2682 3210 6.144078 TGATAGATGTAAGCGAGCAACTAA 57.856 37.500 0.00 0.00 0.00 2.24
2756 3284 4.206477 TGTGATCGATCTGTTCCAACAT 57.794 40.909 25.02 0.00 38.41 2.71
2766 3294 5.034852 TCTGTTCCAACATTCTCTCACAA 57.965 39.130 0.00 0.00 38.41 3.33
2806 3334 6.782082 TGCTCTATGTCTAATTGAGTCACT 57.218 37.500 0.00 0.00 0.00 3.41
3019 3555 1.065199 TGGGAAGCTCGAATTGCAGAT 60.065 47.619 0.00 0.00 0.00 2.90
3089 3629 5.793967 AGAAGGTATGGATAGTCTCCCTTT 58.206 41.667 0.00 0.00 44.23 3.11
3170 3711 3.206150 GACAGTACATGCATTACCTGGG 58.794 50.000 16.44 0.00 0.00 4.45
3198 3739 7.282332 AGGAAATTCTGCTAAAGGATAATGC 57.718 36.000 0.00 0.00 0.00 3.56
3304 3845 1.382009 TGGCCGCTATCCTGTACCA 60.382 57.895 0.00 0.00 0.00 3.25
3384 3925 2.005451 CCTGAAATCACGCAAGAGGAG 58.995 52.381 0.00 0.00 43.62 3.69
3535 4076 5.182001 ACTTGTTCTTACAGATCATGCAACC 59.818 40.000 0.00 0.00 35.28 3.77
3786 4339 7.612677 TGGAAAGTTTAACCTTGTTTTAAGCA 58.387 30.769 0.00 0.00 0.00 3.91
4062 4615 2.029606 GCGCAAAATAATTTCAGCCAGC 59.970 45.455 0.30 0.00 0.00 4.85
4063 4616 3.252400 CGCAAAATAATTTCAGCCAGCA 58.748 40.909 0.00 0.00 0.00 4.41
4160 4713 0.673437 ACAACGCAAAATGAGTGGGG 59.327 50.000 0.00 0.00 28.82 4.96
4171 4730 0.413434 TGAGTGGGGAGACATGGAGA 59.587 55.000 0.00 0.00 0.00 3.71
4247 4806 4.985538 TGGTTCTAATGAAAGGCAGAAGT 58.014 39.130 0.00 0.00 33.52 3.01
4512 5071 7.062749 AGATCCACTTATTTTGCTCGGTATA 57.937 36.000 0.00 0.00 0.00 1.47
4515 5074 9.088512 GATCCACTTATTTTGCTCGGTATATAG 57.911 37.037 0.00 0.00 0.00 1.31
4516 5075 7.959175 TCCACTTATTTTGCTCGGTATATAGT 58.041 34.615 0.00 0.00 0.00 2.12
4517 5076 8.086522 TCCACTTATTTTGCTCGGTATATAGTC 58.913 37.037 0.00 0.00 0.00 2.59
4518 5077 7.331193 CCACTTATTTTGCTCGGTATATAGTCC 59.669 40.741 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.576615 AGAACAACAACTCCAGCTTCC 58.423 47.619 0.00 0.00 0.00 3.46
5 6 3.303395 CGAAGAACAACAACTCCAGCTTC 60.303 47.826 0.00 0.00 0.00 3.86
6 7 2.614057 CGAAGAACAACAACTCCAGCTT 59.386 45.455 0.00 0.00 0.00 3.74
8 9 1.264288 CCGAAGAACAACAACTCCAGC 59.736 52.381 0.00 0.00 0.00 4.85
9 10 2.802816 CTCCGAAGAACAACAACTCCAG 59.197 50.000 0.00 0.00 0.00 3.86
10 11 2.484770 CCTCCGAAGAACAACAACTCCA 60.485 50.000 0.00 0.00 0.00 3.86
11 12 2.143925 CCTCCGAAGAACAACAACTCC 58.856 52.381 0.00 0.00 0.00 3.85
12 13 2.801111 GACCTCCGAAGAACAACAACTC 59.199 50.000 0.00 0.00 0.00 3.01
13 14 2.434702 AGACCTCCGAAGAACAACAACT 59.565 45.455 0.00 0.00 0.00 3.16
14 15 2.835027 AGACCTCCGAAGAACAACAAC 58.165 47.619 0.00 0.00 0.00 3.32
15 16 3.118555 TGAAGACCTCCGAAGAACAACAA 60.119 43.478 0.00 0.00 0.00 2.83
16 17 2.432874 TGAAGACCTCCGAAGAACAACA 59.567 45.455 0.00 0.00 0.00 3.33
17 18 3.060602 CTGAAGACCTCCGAAGAACAAC 58.939 50.000 0.00 0.00 0.00 3.32
18 19 2.698797 ACTGAAGACCTCCGAAGAACAA 59.301 45.455 0.00 0.00 0.00 2.83
19 20 2.035961 CACTGAAGACCTCCGAAGAACA 59.964 50.000 0.00 0.00 0.00 3.18
20 21 2.036089 ACACTGAAGACCTCCGAAGAAC 59.964 50.000 0.00 0.00 0.00 3.01
21 22 2.296471 GACACTGAAGACCTCCGAAGAA 59.704 50.000 0.00 0.00 0.00 2.52
22 23 1.887198 GACACTGAAGACCTCCGAAGA 59.113 52.381 0.00 0.00 0.00 2.87
23 24 1.401670 CGACACTGAAGACCTCCGAAG 60.402 57.143 0.00 0.00 0.00 3.79
24 25 0.596577 CGACACTGAAGACCTCCGAA 59.403 55.000 0.00 0.00 0.00 4.30
25 26 1.241990 CCGACACTGAAGACCTCCGA 61.242 60.000 0.00 0.00 0.00 4.55
26 27 1.213013 CCGACACTGAAGACCTCCG 59.787 63.158 0.00 0.00 0.00 4.63
27 28 1.079750 GCCGACACTGAAGACCTCC 60.080 63.158 0.00 0.00 0.00 4.30
28 29 1.079750 GGCCGACACTGAAGACCTC 60.080 63.158 0.00 0.00 0.00 3.85
29 30 2.932234 CGGCCGACACTGAAGACCT 61.932 63.158 24.07 0.00 0.00 3.85
30 31 2.432628 CGGCCGACACTGAAGACC 60.433 66.667 24.07 0.00 0.00 3.85
31 32 1.444553 CTCGGCCGACACTGAAGAC 60.445 63.158 27.28 0.00 0.00 3.01
32 33 1.602605 TCTCGGCCGACACTGAAGA 60.603 57.895 27.28 15.78 0.00 2.87
33 34 1.444553 GTCTCGGCCGACACTGAAG 60.445 63.158 27.28 13.34 34.11 3.02
34 35 2.649034 GTCTCGGCCGACACTGAA 59.351 61.111 27.28 0.94 34.11 3.02
35 36 3.733960 CGTCTCGGCCGACACTGA 61.734 66.667 27.49 19.59 33.54 3.41
47 48 4.699522 AACCCCTTGCCGCGTCTC 62.700 66.667 4.92 0.00 0.00 3.36
48 49 4.699522 GAACCCCTTGCCGCGTCT 62.700 66.667 4.92 0.00 0.00 4.18
52 53 2.862674 TACATCGAACCCCTTGCCGC 62.863 60.000 0.00 0.00 0.00 6.53
53 54 0.810031 CTACATCGAACCCCTTGCCG 60.810 60.000 0.00 0.00 0.00 5.69
54 55 0.463833 CCTACATCGAACCCCTTGCC 60.464 60.000 0.00 0.00 0.00 4.52
55 56 0.463833 CCCTACATCGAACCCCTTGC 60.464 60.000 0.00 0.00 0.00 4.01
56 57 0.909623 ACCCTACATCGAACCCCTTG 59.090 55.000 0.00 0.00 0.00 3.61
57 58 2.395619 CTACCCTACATCGAACCCCTT 58.604 52.381 0.00 0.00 0.00 3.95
58 59 1.412649 CCTACCCTACATCGAACCCCT 60.413 57.143 0.00 0.00 0.00 4.79
59 60 1.046204 CCTACCCTACATCGAACCCC 58.954 60.000 0.00 0.00 0.00 4.95
60 61 0.391966 GCCTACCCTACATCGAACCC 59.608 60.000 0.00 0.00 0.00 4.11
61 62 1.411041 AGCCTACCCTACATCGAACC 58.589 55.000 0.00 0.00 0.00 3.62
62 63 3.538634 AAAGCCTACCCTACATCGAAC 57.461 47.619 0.00 0.00 0.00 3.95
63 64 4.258543 CAAAAAGCCTACCCTACATCGAA 58.741 43.478 0.00 0.00 0.00 3.71
64 65 3.262405 ACAAAAAGCCTACCCTACATCGA 59.738 43.478 0.00 0.00 0.00 3.59
65 66 3.374058 CACAAAAAGCCTACCCTACATCG 59.626 47.826 0.00 0.00 0.00 3.84
66 67 4.332828 ACACAAAAAGCCTACCCTACATC 58.667 43.478 0.00 0.00 0.00 3.06
67 68 4.332828 GACACAAAAAGCCTACCCTACAT 58.667 43.478 0.00 0.00 0.00 2.29
68 69 3.746940 GACACAAAAAGCCTACCCTACA 58.253 45.455 0.00 0.00 0.00 2.74
69 70 2.740447 CGACACAAAAAGCCTACCCTAC 59.260 50.000 0.00 0.00 0.00 3.18
70 71 2.369532 ACGACACAAAAAGCCTACCCTA 59.630 45.455 0.00 0.00 0.00 3.53
71 72 1.142262 ACGACACAAAAAGCCTACCCT 59.858 47.619 0.00 0.00 0.00 4.34
72 73 1.601166 ACGACACAAAAAGCCTACCC 58.399 50.000 0.00 0.00 0.00 3.69
73 74 3.396560 ACTACGACACAAAAAGCCTACC 58.603 45.455 0.00 0.00 0.00 3.18
74 75 4.271776 ACAACTACGACACAAAAAGCCTAC 59.728 41.667 0.00 0.00 0.00 3.18
75 76 4.271533 CACAACTACGACACAAAAAGCCTA 59.728 41.667 0.00 0.00 0.00 3.93
76 77 3.064820 CACAACTACGACACAAAAAGCCT 59.935 43.478 0.00 0.00 0.00 4.58
77 78 3.181504 ACACAACTACGACACAAAAAGCC 60.182 43.478 0.00 0.00 0.00 4.35
78 79 4.011058 ACACAACTACGACACAAAAAGC 57.989 40.909 0.00 0.00 0.00 3.51
79 80 5.387279 ACAACACAACTACGACACAAAAAG 58.613 37.500 0.00 0.00 0.00 2.27
80 81 5.359716 ACAACACAACTACGACACAAAAA 57.640 34.783 0.00 0.00 0.00 1.94
81 82 4.434461 CGACAACACAACTACGACACAAAA 60.434 41.667 0.00 0.00 0.00 2.44
82 83 3.061028 CGACAACACAACTACGACACAAA 59.939 43.478 0.00 0.00 0.00 2.83
83 84 2.599527 CGACAACACAACTACGACACAA 59.400 45.455 0.00 0.00 0.00 3.33
84 85 2.186891 CGACAACACAACTACGACACA 58.813 47.619 0.00 0.00 0.00 3.72
85 86 2.035176 CACGACAACACAACTACGACAC 60.035 50.000 0.00 0.00 0.00 3.67
86 87 2.186891 CACGACAACACAACTACGACA 58.813 47.619 0.00 0.00 0.00 4.35
87 88 2.187707 ACACGACAACACAACTACGAC 58.812 47.619 0.00 0.00 0.00 4.34
88 89 2.565210 ACACGACAACACAACTACGA 57.435 45.000 0.00 0.00 0.00 3.43
89 90 2.346244 ACAACACGACAACACAACTACG 59.654 45.455 0.00 0.00 0.00 3.51
90 91 4.085884 CAACAACACGACAACACAACTAC 58.914 43.478 0.00 0.00 0.00 2.73
91 92 3.747010 ACAACAACACGACAACACAACTA 59.253 39.130 0.00 0.00 0.00 2.24
92 93 2.550606 ACAACAACACGACAACACAACT 59.449 40.909 0.00 0.00 0.00 3.16
93 94 2.923643 ACAACAACACGACAACACAAC 58.076 42.857 0.00 0.00 0.00 3.32
94 95 4.948608 ATACAACAACACGACAACACAA 57.051 36.364 0.00 0.00 0.00 3.33
95 96 4.948608 AATACAACAACACGACAACACA 57.051 36.364 0.00 0.00 0.00 3.72
96 97 4.497608 CCAAATACAACAACACGACAACAC 59.502 41.667 0.00 0.00 0.00 3.32
97 98 4.156190 ACCAAATACAACAACACGACAACA 59.844 37.500 0.00 0.00 0.00 3.33
98 99 4.664188 ACCAAATACAACAACACGACAAC 58.336 39.130 0.00 0.00 0.00 3.32
99 100 4.494362 CGACCAAATACAACAACACGACAA 60.494 41.667 0.00 0.00 0.00 3.18
100 101 3.001431 CGACCAAATACAACAACACGACA 59.999 43.478 0.00 0.00 0.00 4.35
101 102 3.001533 ACGACCAAATACAACAACACGAC 59.998 43.478 0.00 0.00 0.00 4.34
102 103 3.196463 ACGACCAAATACAACAACACGA 58.804 40.909 0.00 0.00 0.00 4.35
103 104 3.537806 GACGACCAAATACAACAACACG 58.462 45.455 0.00 0.00 0.00 4.49
104 105 3.562557 AGGACGACCAAATACAACAACAC 59.437 43.478 6.71 0.00 38.94 3.32
105 106 3.811083 AGGACGACCAAATACAACAACA 58.189 40.909 6.71 0.00 38.94 3.33
106 107 4.035909 ACAAGGACGACCAAATACAACAAC 59.964 41.667 6.71 0.00 38.94 3.32
107 108 4.200874 ACAAGGACGACCAAATACAACAA 58.799 39.130 6.71 0.00 38.94 2.83
108 109 3.811083 ACAAGGACGACCAAATACAACA 58.189 40.909 6.71 0.00 38.94 3.33
109 110 4.143263 CGTACAAGGACGACCAAATACAAC 60.143 45.833 6.71 0.00 45.82 3.32
110 111 3.989167 CGTACAAGGACGACCAAATACAA 59.011 43.478 6.71 0.00 45.82 2.41
111 112 3.255395 TCGTACAAGGACGACCAAATACA 59.745 43.478 2.91 0.00 46.43 2.29
112 113 3.836949 TCGTACAAGGACGACCAAATAC 58.163 45.455 2.91 4.33 46.43 1.89
121 122 1.065273 CCCGGATCGTACAAGGACG 59.935 63.158 0.73 0.00 44.29 4.79
122 123 0.179119 CACCCGGATCGTACAAGGAC 60.179 60.000 0.73 0.00 0.00 3.85
123 124 0.612732 ACACCCGGATCGTACAAGGA 60.613 55.000 0.73 0.00 0.00 3.36
124 125 0.459585 CACACCCGGATCGTACAAGG 60.460 60.000 0.73 0.00 0.00 3.61
125 126 0.459585 CCACACCCGGATCGTACAAG 60.460 60.000 0.73 0.00 0.00 3.16
126 127 0.899253 TCCACACCCGGATCGTACAA 60.899 55.000 0.73 0.00 0.00 2.41
127 128 1.304299 TCCACACCCGGATCGTACA 60.304 57.895 0.73 0.00 0.00 2.90
128 129 1.318158 ACTCCACACCCGGATCGTAC 61.318 60.000 0.73 0.00 33.56 3.67
129 130 1.000521 ACTCCACACCCGGATCGTA 60.001 57.895 0.73 0.00 33.56 3.43
130 131 2.283676 ACTCCACACCCGGATCGT 60.284 61.111 0.73 0.00 33.56 3.73
131 132 2.184322 CACTCCACACCCGGATCG 59.816 66.667 0.73 0.00 33.56 3.69
132 133 2.584608 CCACTCCACACCCGGATC 59.415 66.667 0.73 0.00 33.56 3.36
133 134 3.009115 CCCACTCCACACCCGGAT 61.009 66.667 0.73 0.00 33.56 4.18
134 135 4.567597 ACCCACTCCACACCCGGA 62.568 66.667 0.73 0.00 0.00 5.14
135 136 4.016706 GACCCACTCCACACCCGG 62.017 72.222 0.00 0.00 0.00 5.73
136 137 4.373116 CGACCCACTCCACACCCG 62.373 72.222 0.00 0.00 0.00 5.28
137 138 4.699522 GCGACCCACTCCACACCC 62.700 72.222 0.00 0.00 0.00 4.61
138 139 4.699522 GGCGACCCACTCCACACC 62.700 72.222 0.00 0.00 0.00 4.16
139 140 3.178540 AAGGCGACCCACTCCACAC 62.179 63.158 0.00 0.00 0.00 3.82
140 141 2.847234 AAGGCGACCCACTCCACA 60.847 61.111 0.00 0.00 0.00 4.17
141 142 2.047179 GAAGGCGACCCACTCCAC 60.047 66.667 0.00 0.00 0.00 4.02
142 143 3.691342 CGAAGGCGACCCACTCCA 61.691 66.667 0.00 0.00 40.82 3.86
143 144 3.236003 AACGAAGGCGACCCACTCC 62.236 63.158 0.00 0.00 41.64 3.85
144 145 2.027625 CAACGAAGGCGACCCACTC 61.028 63.158 0.00 0.00 41.64 3.51
145 146 2.030562 CAACGAAGGCGACCCACT 59.969 61.111 0.00 0.00 41.64 4.00
146 147 1.838568 GAACAACGAAGGCGACCCAC 61.839 60.000 0.00 0.00 41.64 4.61
147 148 1.595929 GAACAACGAAGGCGACCCA 60.596 57.895 0.00 0.00 41.64 4.51
148 149 2.664436 CGAACAACGAAGGCGACCC 61.664 63.158 0.00 0.00 45.77 4.46
149 150 2.851104 CGAACAACGAAGGCGACC 59.149 61.111 0.00 0.00 45.77 4.79
150 151 2.096481 TTGCGAACAACGAAGGCGAC 62.096 55.000 0.00 0.00 45.77 5.19
151 152 1.883544 TTGCGAACAACGAAGGCGA 60.884 52.632 0.00 0.00 45.77 5.54
152 153 1.721133 GTTGCGAACAACGAAGGCG 60.721 57.895 0.00 0.00 46.20 5.52
153 154 4.205584 GTTGCGAACAACGAAGGC 57.794 55.556 0.00 0.00 46.20 4.35
160 161 0.375454 CAACCACTCGTTGCGAACAA 59.625 50.000 0.00 0.00 45.16 2.83
161 162 2.010670 CAACCACTCGTTGCGAACA 58.989 52.632 0.00 0.00 45.16 3.18
162 163 4.893241 CAACCACTCGTTGCGAAC 57.107 55.556 0.00 0.00 45.16 3.95
168 169 1.395608 CAACAACGTCAACCACTCGTT 59.604 47.619 0.00 0.00 46.22 3.85
169 170 1.003851 CAACAACGTCAACCACTCGT 58.996 50.000 0.00 0.00 39.49 4.18
170 171 1.003851 ACAACAACGTCAACCACTCG 58.996 50.000 0.00 0.00 0.00 4.18
171 172 1.735571 ACACAACAACGTCAACCACTC 59.264 47.619 0.00 0.00 0.00 3.51
172 173 1.466950 CACACAACAACGTCAACCACT 59.533 47.619 0.00 0.00 0.00 4.00
173 174 1.198178 ACACACAACAACGTCAACCAC 59.802 47.619 0.00 0.00 0.00 4.16
174 175 1.465387 GACACACAACAACGTCAACCA 59.535 47.619 0.00 0.00 0.00 3.67
175 176 1.735571 AGACACACAACAACGTCAACC 59.264 47.619 0.00 0.00 0.00 3.77
176 177 2.413796 TGAGACACACAACAACGTCAAC 59.586 45.455 0.00 0.00 0.00 3.18
177 178 2.689646 TGAGACACACAACAACGTCAA 58.310 42.857 0.00 0.00 0.00 3.18
178 179 2.371910 TGAGACACACAACAACGTCA 57.628 45.000 0.00 0.00 0.00 4.35
179 180 3.944422 AATGAGACACACAACAACGTC 57.056 42.857 0.00 0.00 0.00 4.34
180 181 3.938963 AGAAATGAGACACACAACAACGT 59.061 39.130 0.00 0.00 0.00 3.99
181 182 4.271049 AGAGAAATGAGACACACAACAACG 59.729 41.667 0.00 0.00 0.00 4.10
182 183 5.741388 AGAGAAATGAGACACACAACAAC 57.259 39.130 0.00 0.00 0.00 3.32
183 184 6.757897 AAAGAGAAATGAGACACACAACAA 57.242 33.333 0.00 0.00 0.00 2.83
184 185 6.757897 AAAAGAGAAATGAGACACACAACA 57.242 33.333 0.00 0.00 0.00 3.33
185 186 7.475840 AGAAAAAGAGAAATGAGACACACAAC 58.524 34.615 0.00 0.00 0.00 3.32
186 187 7.630242 AGAAAAAGAGAAATGAGACACACAA 57.370 32.000 0.00 0.00 0.00 3.33
187 188 8.908786 ATAGAAAAAGAGAAATGAGACACACA 57.091 30.769 0.00 0.00 0.00 3.72
200 201 9.798994 CGTACCTTAGCTTTATAGAAAAAGAGA 57.201 33.333 0.00 0.00 38.50 3.10
201 202 8.541312 GCGTACCTTAGCTTTATAGAAAAAGAG 58.459 37.037 0.00 0.00 38.50 2.85
202 203 8.036575 TGCGTACCTTAGCTTTATAGAAAAAGA 58.963 33.333 0.00 0.00 38.50 2.52
203 204 8.193250 TGCGTACCTTAGCTTTATAGAAAAAG 57.807 34.615 0.00 0.00 39.10 2.27
204 205 8.550710 TTGCGTACCTTAGCTTTATAGAAAAA 57.449 30.769 0.00 0.00 0.00 1.94
205 206 8.726870 ATTGCGTACCTTAGCTTTATAGAAAA 57.273 30.769 0.00 0.00 0.00 2.29
206 207 8.726870 AATTGCGTACCTTAGCTTTATAGAAA 57.273 30.769 0.00 0.00 0.00 2.52
207 208 8.609176 CAAATTGCGTACCTTAGCTTTATAGAA 58.391 33.333 0.00 0.00 0.00 2.10
208 209 7.254658 GCAAATTGCGTACCTTAGCTTTATAGA 60.255 37.037 0.90 0.00 31.71 1.98
209 210 6.851330 GCAAATTGCGTACCTTAGCTTTATAG 59.149 38.462 0.90 0.00 31.71 1.31
210 211 6.721321 GCAAATTGCGTACCTTAGCTTTATA 58.279 36.000 0.90 0.00 31.71 0.98
211 212 5.578776 GCAAATTGCGTACCTTAGCTTTAT 58.421 37.500 0.90 0.00 31.71 1.40
212 213 4.976987 GCAAATTGCGTACCTTAGCTTTA 58.023 39.130 0.90 0.00 31.71 1.85
213 214 3.833442 GCAAATTGCGTACCTTAGCTTT 58.167 40.909 0.90 0.00 31.71 3.51
214 215 3.487563 GCAAATTGCGTACCTTAGCTT 57.512 42.857 0.90 0.00 31.71 3.74
226 227 3.398954 TTTCGAGGATACGCAAATTGC 57.601 42.857 8.09 8.09 46.39 3.56
246 247 7.042335 CCTCCGATCTAGTGTAAGACATTTTT 58.958 38.462 0.00 0.00 0.00 1.94
247 248 6.380274 TCCTCCGATCTAGTGTAAGACATTTT 59.620 38.462 0.00 0.00 0.00 1.82
248 249 5.892119 TCCTCCGATCTAGTGTAAGACATTT 59.108 40.000 0.00 0.00 0.00 2.32
249 250 5.446860 TCCTCCGATCTAGTGTAAGACATT 58.553 41.667 0.00 0.00 0.00 2.71
250 251 5.050126 TCCTCCGATCTAGTGTAAGACAT 57.950 43.478 0.00 0.00 0.00 3.06
251 252 4.498894 TCCTCCGATCTAGTGTAAGACA 57.501 45.455 0.00 0.00 0.00 3.41
252 253 4.883006 ACTTCCTCCGATCTAGTGTAAGAC 59.117 45.833 0.00 0.00 0.00 3.01
253 254 5.113446 ACTTCCTCCGATCTAGTGTAAGA 57.887 43.478 0.00 0.00 0.00 2.10
254 255 6.939132 TTACTTCCTCCGATCTAGTGTAAG 57.061 41.667 0.00 0.00 0.00 2.34
255 256 7.707624 TTTTACTTCCTCCGATCTAGTGTAA 57.292 36.000 0.00 0.00 0.00 2.41
256 257 7.707624 TTTTTACTTCCTCCGATCTAGTGTA 57.292 36.000 0.00 0.00 0.00 2.90
257 258 6.600882 TTTTTACTTCCTCCGATCTAGTGT 57.399 37.500 0.00 0.00 0.00 3.55
258 259 9.765795 ATTATTTTTACTTCCTCCGATCTAGTG 57.234 33.333 0.00 0.00 0.00 2.74
261 262 9.052759 GCAATTATTTTTACTTCCTCCGATCTA 57.947 33.333 0.00 0.00 0.00 1.98
262 263 7.013369 GGCAATTATTTTTACTTCCTCCGATCT 59.987 37.037 0.00 0.00 0.00 2.75
263 264 7.139392 GGCAATTATTTTTACTTCCTCCGATC 58.861 38.462 0.00 0.00 0.00 3.69
264 265 6.040504 GGGCAATTATTTTTACTTCCTCCGAT 59.959 38.462 0.00 0.00 0.00 4.18
265 266 5.358725 GGGCAATTATTTTTACTTCCTCCGA 59.641 40.000 0.00 0.00 0.00 4.55
266 267 5.126384 TGGGCAATTATTTTTACTTCCTCCG 59.874 40.000 0.00 0.00 0.00 4.63
267 268 6.538945 TGGGCAATTATTTTTACTTCCTCC 57.461 37.500 0.00 0.00 0.00 4.30
268 269 9.750125 CTTATGGGCAATTATTTTTACTTCCTC 57.250 33.333 0.00 0.00 0.00 3.71
269 270 9.487442 TCTTATGGGCAATTATTTTTACTTCCT 57.513 29.630 0.00 0.00 0.00 3.36
278 279 9.956640 TGATGTTTTTCTTATGGGCAATTATTT 57.043 25.926 0.00 0.00 0.00 1.40
279 280 9.956640 TTGATGTTTTTCTTATGGGCAATTATT 57.043 25.926 0.00 0.00 0.00 1.40
280 281 9.956640 TTTGATGTTTTTCTTATGGGCAATTAT 57.043 25.926 0.00 0.00 0.00 1.28
281 282 9.784531 TTTTGATGTTTTTCTTATGGGCAATTA 57.215 25.926 0.00 0.00 0.00 1.40
282 283 8.688747 TTTTGATGTTTTTCTTATGGGCAATT 57.311 26.923 0.00 0.00 0.00 2.32
283 284 7.938490 ACTTTTGATGTTTTTCTTATGGGCAAT 59.062 29.630 0.00 0.00 0.00 3.56
294 295 5.743872 AGAAGACGCACTTTTGATGTTTTTC 59.256 36.000 0.00 0.00 39.13 2.29
298 299 4.261197 GGAAGAAGACGCACTTTTGATGTT 60.261 41.667 0.00 0.00 39.13 2.71
300 301 3.499918 AGGAAGAAGACGCACTTTTGATG 59.500 43.478 0.00 0.00 39.13 3.07
330 331 2.200092 TGGAAGGGTTTGGGTGGC 59.800 61.111 0.00 0.00 0.00 5.01
343 344 0.399949 AGAGTGGTGAGTGGGTGGAA 60.400 55.000 0.00 0.00 0.00 3.53
344 345 0.832135 GAGAGTGGTGAGTGGGTGGA 60.832 60.000 0.00 0.00 0.00 4.02
347 348 0.105453 AGTGAGAGTGGTGAGTGGGT 60.105 55.000 0.00 0.00 0.00 4.51
380 381 4.431131 CTCATGGTTGGGGCCGCT 62.431 66.667 21.80 0.00 0.00 5.52
386 387 5.927281 AGATTCAATTTCTCATGGTTGGG 57.073 39.130 0.00 0.00 0.00 4.12
390 391 6.013984 AGGCAAAAGATTCAATTTCTCATGGT 60.014 34.615 0.00 0.00 0.00 3.55
392 393 7.063074 GTGAGGCAAAAGATTCAATTTCTCATG 59.937 37.037 0.00 0.00 0.00 3.07
393 394 7.039223 AGTGAGGCAAAAGATTCAATTTCTCAT 60.039 33.333 0.00 0.00 0.00 2.90
394 395 6.266103 AGTGAGGCAAAAGATTCAATTTCTCA 59.734 34.615 0.00 0.00 0.00 3.27
395 396 6.685657 AGTGAGGCAAAAGATTCAATTTCTC 58.314 36.000 0.00 0.00 0.00 2.87
396 397 6.661304 AGTGAGGCAAAAGATTCAATTTCT 57.339 33.333 0.00 0.00 0.00 2.52
397 398 7.719778 AAAGTGAGGCAAAAGATTCAATTTC 57.280 32.000 0.00 0.00 34.05 2.17
398 399 8.424133 AGTAAAGTGAGGCAAAAGATTCAATTT 58.576 29.630 4.55 4.55 39.93 1.82
399 400 7.955918 AGTAAAGTGAGGCAAAAGATTCAATT 58.044 30.769 0.00 0.00 30.17 2.32
400 401 7.530426 AGTAAAGTGAGGCAAAAGATTCAAT 57.470 32.000 0.00 0.00 0.00 2.57
401 402 6.959639 AGTAAAGTGAGGCAAAAGATTCAA 57.040 33.333 0.00 0.00 0.00 2.69
402 403 6.772716 AGAAGTAAAGTGAGGCAAAAGATTCA 59.227 34.615 0.00 0.00 0.00 2.57
403 404 7.208225 AGAAGTAAAGTGAGGCAAAAGATTC 57.792 36.000 0.00 0.00 0.00 2.52
404 405 6.207614 GGAGAAGTAAAGTGAGGCAAAAGATT 59.792 38.462 0.00 0.00 0.00 2.40
405 406 5.707764 GGAGAAGTAAAGTGAGGCAAAAGAT 59.292 40.000 0.00 0.00 0.00 2.40
406 407 5.063880 GGAGAAGTAAAGTGAGGCAAAAGA 58.936 41.667 0.00 0.00 0.00 2.52
407 408 4.821805 TGGAGAAGTAAAGTGAGGCAAAAG 59.178 41.667 0.00 0.00 0.00 2.27
408 409 4.787551 TGGAGAAGTAAAGTGAGGCAAAA 58.212 39.130 0.00 0.00 0.00 2.44
409 410 4.431416 TGGAGAAGTAAAGTGAGGCAAA 57.569 40.909 0.00 0.00 0.00 3.68
410 411 4.640771 ATGGAGAAGTAAAGTGAGGCAA 57.359 40.909 0.00 0.00 0.00 4.52
411 412 5.483937 TCTTATGGAGAAGTAAAGTGAGGCA 59.516 40.000 0.00 0.00 0.00 4.75
412 413 5.978814 TCTTATGGAGAAGTAAAGTGAGGC 58.021 41.667 0.00 0.00 0.00 4.70
413 414 7.786030 TGATCTTATGGAGAAGTAAAGTGAGG 58.214 38.462 0.00 0.00 38.06 3.86
414 415 9.829507 AATGATCTTATGGAGAAGTAAAGTGAG 57.170 33.333 0.00 0.00 38.06 3.51
417 418 8.897752 GCAAATGATCTTATGGAGAAGTAAAGT 58.102 33.333 0.00 0.00 38.06 2.66
418 419 8.348507 GGCAAATGATCTTATGGAGAAGTAAAG 58.651 37.037 0.00 0.00 38.06 1.85
419 420 7.285401 GGGCAAATGATCTTATGGAGAAGTAAA 59.715 37.037 0.00 0.00 38.06 2.01
420 421 6.772716 GGGCAAATGATCTTATGGAGAAGTAA 59.227 38.462 0.00 0.00 38.06 2.24
421 422 6.299141 GGGCAAATGATCTTATGGAGAAGTA 58.701 40.000 0.00 0.00 38.06 2.24
422 423 5.136105 GGGCAAATGATCTTATGGAGAAGT 58.864 41.667 0.00 0.00 38.06 3.01
423 424 4.522022 GGGGCAAATGATCTTATGGAGAAG 59.478 45.833 0.00 0.00 38.06 2.85
424 425 4.473444 GGGGCAAATGATCTTATGGAGAA 58.527 43.478 0.00 0.00 38.06 2.87
425 426 3.181429 GGGGGCAAATGATCTTATGGAGA 60.181 47.826 0.00 0.00 39.13 3.71
426 427 3.160269 GGGGGCAAATGATCTTATGGAG 58.840 50.000 0.00 0.00 0.00 3.86
427 428 3.243359 GGGGGCAAATGATCTTATGGA 57.757 47.619 0.00 0.00 0.00 3.41
451 452 0.824182 CCACCCGGTAGCCTCTAGAG 60.824 65.000 13.18 13.18 0.00 2.43
452 453 1.229359 CCACCCGGTAGCCTCTAGA 59.771 63.158 0.00 0.00 0.00 2.43
453 454 1.833049 CCCACCCGGTAGCCTCTAG 60.833 68.421 0.00 0.00 0.00 2.43
454 455 2.281091 CCCACCCGGTAGCCTCTA 59.719 66.667 0.00 0.00 0.00 2.43
455 456 4.798682 CCCCACCCGGTAGCCTCT 62.799 72.222 0.00 0.00 0.00 3.69
473 474 1.679977 CAATGACAGTGGCCCCAGG 60.680 63.158 0.00 0.00 0.00 4.45
474 475 0.679002 CTCAATGACAGTGGCCCCAG 60.679 60.000 0.00 0.00 0.00 4.45
475 476 1.133181 TCTCAATGACAGTGGCCCCA 61.133 55.000 0.00 0.00 0.00 4.96
476 477 0.678048 GTCTCAATGACAGTGGCCCC 60.678 60.000 0.00 0.00 44.73 5.80
477 478 2.859992 GTCTCAATGACAGTGGCCC 58.140 57.895 0.00 0.00 44.73 5.80
485 486 2.421424 GCCCTGTGATTGTCTCAATGAC 59.579 50.000 5.42 5.42 45.54 3.06
486 487 2.040145 TGCCCTGTGATTGTCTCAATGA 59.960 45.455 0.00 0.00 35.07 2.57
487 488 2.439409 TGCCCTGTGATTGTCTCAATG 58.561 47.619 0.00 0.00 35.07 2.82
488 489 2.885135 TGCCCTGTGATTGTCTCAAT 57.115 45.000 0.00 0.00 35.07 2.57
489 490 2.655090 TTGCCCTGTGATTGTCTCAA 57.345 45.000 0.00 0.00 35.07 3.02
490 491 2.655090 TTTGCCCTGTGATTGTCTCA 57.345 45.000 0.00 0.00 0.00 3.27
491 492 3.084039 TGATTTGCCCTGTGATTGTCTC 58.916 45.455 0.00 0.00 0.00 3.36
492 493 3.159213 TGATTTGCCCTGTGATTGTCT 57.841 42.857 0.00 0.00 0.00 3.41
493 494 3.181483 GGATGATTTGCCCTGTGATTGTC 60.181 47.826 0.00 0.00 0.00 3.18
494 495 2.762327 GGATGATTTGCCCTGTGATTGT 59.238 45.455 0.00 0.00 0.00 2.71
495 496 2.101917 GGGATGATTTGCCCTGTGATTG 59.898 50.000 0.00 0.00 41.31 2.67
496 497 2.391678 GGGATGATTTGCCCTGTGATT 58.608 47.619 0.00 0.00 41.31 2.57
497 498 2.077687 GGGATGATTTGCCCTGTGAT 57.922 50.000 0.00 0.00 41.31 3.06
498 499 3.594453 GGGATGATTTGCCCTGTGA 57.406 52.632 0.00 0.00 41.31 3.58
504 505 2.369983 TCTCATGGGGATGATTTGCC 57.630 50.000 0.00 0.00 34.39 4.52
505 506 4.741321 TTTTCTCATGGGGATGATTTGC 57.259 40.909 0.00 0.00 0.00 3.68
506 507 6.540914 CCAATTTTTCTCATGGGGATGATTTG 59.459 38.462 0.00 0.00 0.00 2.32
507 508 6.444493 TCCAATTTTTCTCATGGGGATGATTT 59.556 34.615 0.00 0.00 33.66 2.17
508 509 5.965705 TCCAATTTTTCTCATGGGGATGATT 59.034 36.000 0.00 0.00 33.66 2.57
509 510 5.531198 TCCAATTTTTCTCATGGGGATGAT 58.469 37.500 0.00 0.00 33.66 2.45
510 511 4.945411 TCCAATTTTTCTCATGGGGATGA 58.055 39.130 0.00 0.00 33.66 2.92
511 512 5.601313 AGATCCAATTTTTCTCATGGGGATG 59.399 40.000 0.00 0.00 34.23 3.51
512 513 5.785123 AGATCCAATTTTTCTCATGGGGAT 58.215 37.500 0.00 0.00 36.65 3.85
513 514 5.211078 AGATCCAATTTTTCTCATGGGGA 57.789 39.130 0.00 0.00 33.66 4.81
514 515 5.945144 AAGATCCAATTTTTCTCATGGGG 57.055 39.130 0.00 0.00 33.66 4.96
515 516 6.093082 GCAAAAGATCCAATTTTTCTCATGGG 59.907 38.462 0.00 0.00 33.66 4.00
516 517 6.093082 GGCAAAAGATCCAATTTTTCTCATGG 59.907 38.462 0.00 0.00 0.00 3.66
517 518 6.093082 GGGCAAAAGATCCAATTTTTCTCATG 59.907 38.462 0.00 0.00 0.00 3.07
518 519 6.175471 GGGCAAAAGATCCAATTTTTCTCAT 58.825 36.000 0.00 0.00 0.00 2.90
519 520 5.512921 GGGGCAAAAGATCCAATTTTTCTCA 60.513 40.000 0.00 0.00 0.00 3.27
520 521 4.937620 GGGGCAAAAGATCCAATTTTTCTC 59.062 41.667 0.00 0.00 0.00 2.87
521 522 4.350520 TGGGGCAAAAGATCCAATTTTTCT 59.649 37.500 0.00 0.00 0.00 2.52
522 523 4.455533 GTGGGGCAAAAGATCCAATTTTTC 59.544 41.667 0.00 0.00 0.00 2.29
523 524 4.104579 AGTGGGGCAAAAGATCCAATTTTT 59.895 37.500 0.00 0.00 0.00 1.94
524 525 3.652387 AGTGGGGCAAAAGATCCAATTTT 59.348 39.130 0.00 0.00 0.00 1.82
525 526 3.250617 AGTGGGGCAAAAGATCCAATTT 58.749 40.909 0.00 0.00 0.00 1.82
526 527 2.906568 AGTGGGGCAAAAGATCCAATT 58.093 42.857 0.00 0.00 0.00 2.32
527 528 2.629017 AGTGGGGCAAAAGATCCAAT 57.371 45.000 0.00 0.00 0.00 3.16
528 529 2.397044 AAGTGGGGCAAAAGATCCAA 57.603 45.000 0.00 0.00 0.00 3.53
529 530 2.397044 AAAGTGGGGCAAAAGATCCA 57.603 45.000 0.00 0.00 0.00 3.41
530 531 3.431415 AGTAAAGTGGGGCAAAAGATCC 58.569 45.455 0.00 0.00 0.00 3.36
531 532 4.767409 AGAAGTAAAGTGGGGCAAAAGATC 59.233 41.667 0.00 0.00 0.00 2.75
532 533 4.740902 AGAAGTAAAGTGGGGCAAAAGAT 58.259 39.130 0.00 0.00 0.00 2.40
533 534 4.178956 AGAAGTAAAGTGGGGCAAAAGA 57.821 40.909 0.00 0.00 0.00 2.52
966 967 1.134965 CAGTGACTTCGGACCTCATCC 60.135 57.143 0.00 0.00 45.20 3.51
967 968 1.546476 ACAGTGACTTCGGACCTCATC 59.454 52.381 0.00 0.00 0.00 2.92
968 969 1.546476 GACAGTGACTTCGGACCTCAT 59.454 52.381 0.00 0.00 0.00 2.90
969 970 0.959553 GACAGTGACTTCGGACCTCA 59.040 55.000 0.00 0.00 0.00 3.86
970 971 0.959553 TGACAGTGACTTCGGACCTC 59.040 55.000 0.00 0.00 0.00 3.85
971 972 1.633774 ATGACAGTGACTTCGGACCT 58.366 50.000 0.00 0.00 0.00 3.85
972 973 2.069273 CAATGACAGTGACTTCGGACC 58.931 52.381 0.00 0.00 0.00 4.46
973 974 2.989840 CTCAATGACAGTGACTTCGGAC 59.010 50.000 0.51 0.00 0.00 4.79
974 975 2.890945 TCTCAATGACAGTGACTTCGGA 59.109 45.455 0.51 0.00 0.00 4.55
975 976 2.989840 GTCTCAATGACAGTGACTTCGG 59.010 50.000 0.51 0.00 44.73 4.30
986 987 3.503363 TGCCTTGTGATTGTCTCAATGAC 59.497 43.478 5.42 5.42 45.54 3.06
987 988 3.753815 TGCCTTGTGATTGTCTCAATGA 58.246 40.909 0.00 0.00 35.07 2.57
988 989 4.508461 TTGCCTTGTGATTGTCTCAATG 57.492 40.909 0.00 0.00 35.07 2.82
989 990 5.244402 TGATTTGCCTTGTGATTGTCTCAAT 59.756 36.000 0.00 0.00 35.07 2.57
990 991 4.583907 TGATTTGCCTTGTGATTGTCTCAA 59.416 37.500 0.00 0.00 35.07 3.02
991 992 4.143543 TGATTTGCCTTGTGATTGTCTCA 58.856 39.130 0.00 0.00 0.00 3.27
992 993 4.771590 TGATTTGCCTTGTGATTGTCTC 57.228 40.909 0.00 0.00 0.00 3.36
993 994 5.244402 TGAATGATTTGCCTTGTGATTGTCT 59.756 36.000 0.00 0.00 0.00 3.41
994 995 5.472148 TGAATGATTTGCCTTGTGATTGTC 58.528 37.500 0.00 0.00 0.00 3.18
995 996 5.471556 TGAATGATTTGCCTTGTGATTGT 57.528 34.783 0.00 0.00 0.00 2.71
996 997 5.121142 GGTTGAATGATTTGCCTTGTGATTG 59.879 40.000 0.00 0.00 0.00 2.67
997 998 5.240121 GGTTGAATGATTTGCCTTGTGATT 58.760 37.500 0.00 0.00 0.00 2.57
998 999 4.322953 GGGTTGAATGATTTGCCTTGTGAT 60.323 41.667 0.00 0.00 0.00 3.06
999 1000 3.006752 GGGTTGAATGATTTGCCTTGTGA 59.993 43.478 0.00 0.00 0.00 3.58
1000 1001 3.328505 GGGTTGAATGATTTGCCTTGTG 58.671 45.455 0.00 0.00 0.00 3.33
1001 1002 2.302733 GGGGTTGAATGATTTGCCTTGT 59.697 45.455 0.00 0.00 0.00 3.16
1002 1003 2.568509 AGGGGTTGAATGATTTGCCTTG 59.431 45.455 0.00 0.00 0.00 3.61
1003 1004 2.906568 AGGGGTTGAATGATTTGCCTT 58.093 42.857 0.00 0.00 0.00 4.35
1004 1005 2.568509 CAAGGGGTTGAATGATTTGCCT 59.431 45.455 0.00 0.00 0.00 4.75
1005 1006 2.302733 ACAAGGGGTTGAATGATTTGCC 59.697 45.455 0.00 0.00 0.00 4.52
1006 1007 3.683365 ACAAGGGGTTGAATGATTTGC 57.317 42.857 0.00 0.00 0.00 3.68
1007 1008 6.646240 CACTTTACAAGGGGTTGAATGATTTG 59.354 38.462 0.00 0.00 0.00 2.32
1008 1009 6.758254 CACTTTACAAGGGGTTGAATGATTT 58.242 36.000 0.00 0.00 0.00 2.17
1009 1010 6.345096 CACTTTACAAGGGGTTGAATGATT 57.655 37.500 0.00 0.00 0.00 2.57
1010 1011 5.982890 CACTTTACAAGGGGTTGAATGAT 57.017 39.130 0.00 0.00 0.00 2.45
1020 1021 1.710816 TTTGCCCCACTTTACAAGGG 58.289 50.000 0.00 0.00 42.94 3.95
1021 1022 2.896685 TGATTTGCCCCACTTTACAAGG 59.103 45.455 0.00 0.00 0.00 3.61
1022 1023 4.381932 GGATGATTTGCCCCACTTTACAAG 60.382 45.833 0.00 0.00 0.00 3.16
1023 1024 3.513515 GGATGATTTGCCCCACTTTACAA 59.486 43.478 0.00 0.00 0.00 2.41
1024 1025 3.096092 GGATGATTTGCCCCACTTTACA 58.904 45.455 0.00 0.00 0.00 2.41
1025 1026 3.096092 TGGATGATTTGCCCCACTTTAC 58.904 45.455 0.00 0.00 0.00 2.01
1026 1027 3.464720 TGGATGATTTGCCCCACTTTA 57.535 42.857 0.00 0.00 0.00 1.85
1027 1028 2.323999 TGGATGATTTGCCCCACTTT 57.676 45.000 0.00 0.00 0.00 2.66
1028 1029 2.323999 TTGGATGATTTGCCCCACTT 57.676 45.000 0.00 0.00 0.00 3.16
1029 1030 2.391678 GATTGGATGATTTGCCCCACT 58.608 47.619 0.00 0.00 0.00 4.00
1030 1031 1.413812 GGATTGGATGATTTGCCCCAC 59.586 52.381 0.00 0.00 0.00 4.61
1031 1032 1.692121 GGGATTGGATGATTTGCCCCA 60.692 52.381 0.00 0.00 32.98 4.96
1032 1033 1.051008 GGGATTGGATGATTTGCCCC 58.949 55.000 0.00 0.00 0.00 5.80
1033 1034 1.051008 GGGGATTGGATGATTTGCCC 58.949 55.000 0.00 0.00 32.23 5.36
1034 1035 1.051008 GGGGGATTGGATGATTTGCC 58.949 55.000 0.00 0.00 0.00 4.52
1035 1036 1.792115 TGGGGGATTGGATGATTTGC 58.208 50.000 0.00 0.00 0.00 3.68
1036 1037 2.435437 GGTTGGGGGATTGGATGATTTG 59.565 50.000 0.00 0.00 0.00 2.32
1037 1038 2.045605 TGGTTGGGGGATTGGATGATTT 59.954 45.455 0.00 0.00 0.00 2.17
1038 1039 1.650700 TGGTTGGGGGATTGGATGATT 59.349 47.619 0.00 0.00 0.00 2.57
1039 1040 1.317922 TGGTTGGGGGATTGGATGAT 58.682 50.000 0.00 0.00 0.00 2.45
1040 1041 1.088269 TTGGTTGGGGGATTGGATGA 58.912 50.000 0.00 0.00 0.00 2.92
1041 1042 1.554617 GTTTGGTTGGGGGATTGGATG 59.445 52.381 0.00 0.00 0.00 3.51
1042 1043 1.150986 TGTTTGGTTGGGGGATTGGAT 59.849 47.619 0.00 0.00 0.00 3.41
1043 1044 0.563173 TGTTTGGTTGGGGGATTGGA 59.437 50.000 0.00 0.00 0.00 3.53
1044 1045 1.554617 GATGTTTGGTTGGGGGATTGG 59.445 52.381 0.00 0.00 0.00 3.16
1045 1046 2.497273 GAGATGTTTGGTTGGGGGATTG 59.503 50.000 0.00 0.00 0.00 2.67
1046 1047 2.383338 AGAGATGTTTGGTTGGGGGATT 59.617 45.455 0.00 0.00 0.00 3.01
1047 1048 2.003072 AGAGATGTTTGGTTGGGGGAT 58.997 47.619 0.00 0.00 0.00 3.85
1048 1049 1.354368 GAGAGATGTTTGGTTGGGGGA 59.646 52.381 0.00 0.00 0.00 4.81
1049 1050 1.355720 AGAGAGATGTTTGGTTGGGGG 59.644 52.381 0.00 0.00 0.00 5.40
1050 1051 2.887151 AGAGAGATGTTTGGTTGGGG 57.113 50.000 0.00 0.00 0.00 4.96
1051 1052 4.096984 GCATTAGAGAGATGTTTGGTTGGG 59.903 45.833 0.00 0.00 0.00 4.12
1052 1053 4.701651 TGCATTAGAGAGATGTTTGGTTGG 59.298 41.667 0.00 0.00 0.00 3.77
1053 1054 5.885230 TGCATTAGAGAGATGTTTGGTTG 57.115 39.130 0.00 0.00 0.00 3.77
1054 1055 5.591877 GGATGCATTAGAGAGATGTTTGGTT 59.408 40.000 0.00 0.00 0.00 3.67
1055 1056 5.104193 AGGATGCATTAGAGAGATGTTTGGT 60.104 40.000 0.00 0.00 0.00 3.67
1056 1057 5.374921 AGGATGCATTAGAGAGATGTTTGG 58.625 41.667 0.00 0.00 0.00 3.28
1057 1058 5.469421 GGAGGATGCATTAGAGAGATGTTTG 59.531 44.000 0.00 0.00 0.00 2.93
1058 1059 5.131642 TGGAGGATGCATTAGAGAGATGTTT 59.868 40.000 0.00 0.00 0.00 2.83
1059 1060 4.657504 TGGAGGATGCATTAGAGAGATGTT 59.342 41.667 0.00 0.00 0.00 2.71
1060 1061 4.040217 GTGGAGGATGCATTAGAGAGATGT 59.960 45.833 0.00 0.00 39.99 3.06
1069 1070 4.721776 AGTAAGAAGGTGGAGGATGCATTA 59.278 41.667 0.00 0.00 39.99 1.90
1090 1091 0.108615 CACGGGAAGAGATTGCGAGT 60.109 55.000 0.00 0.00 0.00 4.18
1116 1117 3.327404 GGGGTTCTTGCTCCCGGA 61.327 66.667 0.73 0.00 44.27 5.14
1154 1158 2.442272 AGGTCCGGGTCATCCTCG 60.442 66.667 0.00 0.00 0.00 4.63
1200 1204 1.089112 CATTCGTGCAGCAATCCAGA 58.911 50.000 0.00 0.00 0.00 3.86
1206 1210 0.447406 CGATTCCATTCGTGCAGCAA 59.553 50.000 0.00 0.00 34.46 3.91
1612 1676 1.516110 CATCCCATCCTTCACCCTCT 58.484 55.000 0.00 0.00 0.00 3.69
1711 1775 0.648958 GTAGTAACACGCCCAATCGC 59.351 55.000 0.00 0.00 0.00 4.58
1724 1788 0.249155 GCAGGTATGCGCCGTAGTAA 60.249 55.000 4.18 0.00 43.87 2.24
1811 1875 2.599875 TTTCCTGCCGCCAATGCA 60.600 55.556 0.00 0.00 37.32 3.96
1839 1903 0.871722 TGATTGTCGTCGGCTTTTGG 59.128 50.000 0.00 0.00 0.00 3.28
1906 1970 0.238289 CGCTTCAAACCGCTGTGATT 59.762 50.000 0.00 0.00 0.00 2.57
2093 2493 0.178767 TCAGCAGCTTGACAGTGTGT 59.821 50.000 0.00 0.00 0.00 3.72
2099 2499 1.817357 CCTGATTCAGCAGCTTGACA 58.183 50.000 8.23 0.00 34.56 3.58
2205 2605 1.931841 CGTGTGCATCTCATCCTTCAG 59.068 52.381 0.00 0.00 0.00 3.02
2262 2662 0.438830 AGTTCATCGTCGCTTTTCGC 59.561 50.000 0.00 0.00 38.27 4.70
2432 2957 1.747355 CCTGCTTGCTTCCTTACATGG 59.253 52.381 0.00 0.00 0.00 3.66
2567 3095 0.461548 CTAGCCCTTCACGCTCATCA 59.538 55.000 0.00 0.00 37.79 3.07
2682 3210 5.705905 GTGGTGCAAAAGTAGAGGAAGTTAT 59.294 40.000 0.00 0.00 0.00 1.89
2766 3294 9.182214 ACATAGAGCAAAATTATCACATGAACT 57.818 29.630 0.00 0.00 0.00 3.01
2787 3315 6.255237 CAGCACAGTGACTCAATTAGACATAG 59.745 42.308 4.15 0.00 32.50 2.23
2795 3323 2.874701 GTGACAGCACAGTGACTCAATT 59.125 45.455 4.15 0.00 44.51 2.32
3019 3555 1.118838 CAAAAGGGTGCCAGTTTGGA 58.881 50.000 0.00 0.00 40.96 3.53
3089 3629 9.772973 ACATGATGTAAGTGTCTACAAAAGTAA 57.227 29.630 0.00 0.00 35.48 2.24
3112 3652 7.094377 ACGGAAATGTTTGCAAGTCTATAACAT 60.094 33.333 0.00 1.83 40.17 2.71
3170 3711 8.732746 TTATCCTTTAGCAGAATTTCCTACAC 57.267 34.615 0.00 0.00 0.00 2.90
3198 3739 6.978080 GTGCTCTTCTAACTCCTGAAGATTAG 59.022 42.308 5.98 0.00 44.90 1.73
3202 3743 3.191581 CGTGCTCTTCTAACTCCTGAAGA 59.808 47.826 0.00 0.00 44.15 2.87
3304 3845 4.346418 CCATCCTTGTAGTTCCATAGCTCT 59.654 45.833 0.00 0.00 0.00 4.09
3480 4021 3.129988 ACGAAGACCCAACTAATCTACCG 59.870 47.826 0.00 0.00 0.00 4.02
3535 4076 5.200454 CAAAAGGCGATCACGATTAATCTG 58.800 41.667 13.45 10.33 42.66 2.90
3786 4339 7.872061 AAAAGGGATTCTTAGGTTGGAAATT 57.128 32.000 0.00 0.00 34.78 1.82
4046 4599 9.321562 CTGAAATATTGCTGGCTGAAATTATTT 57.678 29.630 2.65 7.33 0.00 1.40
4047 4600 8.698210 TCTGAAATATTGCTGGCTGAAATTATT 58.302 29.630 2.65 0.00 0.00 1.40
4048 4601 8.241497 TCTGAAATATTGCTGGCTGAAATTAT 57.759 30.769 2.65 0.00 0.00 1.28
4052 4605 5.105635 CCTTCTGAAATATTGCTGGCTGAAA 60.106 40.000 0.80 0.00 0.00 2.69
4062 4615 9.793252 CTAAAACATGGACCTTCTGAAATATTG 57.207 33.333 0.00 0.00 0.00 1.90
4063 4616 8.971073 CCTAAAACATGGACCTTCTGAAATATT 58.029 33.333 0.00 0.00 0.00 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.