Multiple sequence alignment - TraesCS6A01G312900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G312900 chr6A 100.000 6312 0 0 1 6312 549530348 549536659 0.000000e+00 11657.0
1 TraesCS6A01G312900 chr6A 85.071 1132 124 26 3340 4447 586998153 586997043 0.000000e+00 1112.0
2 TraesCS6A01G312900 chr6A 83.333 492 72 8 4579 5063 586996876 586996388 4.490000e-121 446.0
3 TraesCS6A01G312900 chr6A 83.673 343 35 11 5094 5417 586996218 586995878 2.860000e-78 303.0
4 TraesCS6A01G312900 chr6A 77.593 540 66 29 2026 2519 586998701 586998171 6.230000e-70 276.0
5 TraesCS6A01G312900 chr6A 88.945 199 22 0 1455 1653 586999002 586998804 4.890000e-61 246.0
6 TraesCS6A01G312900 chr6A 89.320 103 11 0 1143 1245 586999303 586999201 5.140000e-26 130.0
7 TraesCS6A01G312900 chr6D 94.631 2943 124 11 2812 5746 403057736 403060652 0.000000e+00 4529.0
8 TraesCS6A01G312900 chr6D 91.973 1196 61 18 1223 2403 403056165 403057340 0.000000e+00 1644.0
9 TraesCS6A01G312900 chr6D 87.160 1285 80 32 1 1221 403053527 403054790 0.000000e+00 1380.0
10 TraesCS6A01G312900 chr6D 87.833 1052 81 23 2812 3848 94772260 94773279 0.000000e+00 1190.0
11 TraesCS6A01G312900 chr6D 89.349 676 45 12 2078 2734 94771606 94772273 0.000000e+00 824.0
12 TraesCS6A01G312900 chr6D 96.813 251 7 1 5744 5993 403062872 403063122 9.790000e-113 418.0
13 TraesCS6A01G312900 chr6D 94.915 236 12 0 5992 6227 403063590 403063825 2.780000e-98 370.0
14 TraesCS6A01G312900 chr6D 85.465 344 23 10 2407 2734 403057417 403057749 3.650000e-87 333.0
15 TraesCS6A01G312900 chr6D 92.453 106 2 3 6208 6312 403063978 403064078 5.100000e-31 147.0
16 TraesCS6A01G312900 chr6B 92.673 1938 89 22 827 2734 603905669 603907583 0.000000e+00 2743.0
17 TraesCS6A01G312900 chr6B 93.466 1653 87 11 2814 4456 603907572 603909213 0.000000e+00 2435.0
18 TraesCS6A01G312900 chr6B 85.629 842 75 25 1 813 603901652 603902476 0.000000e+00 843.0
19 TraesCS6A01G312900 chr6B 89.086 678 45 14 2078 2734 178014314 178013645 0.000000e+00 815.0
20 TraesCS6A01G312900 chr6B 86.835 714 52 19 3146 3848 178013290 178012608 0.000000e+00 760.0
21 TraesCS6A01G312900 chr6B 91.923 520 37 4 5094 5609 603909892 603910410 0.000000e+00 723.0
22 TraesCS6A01G312900 chr6B 91.875 480 32 6 4503 4979 603909218 603909693 0.000000e+00 664.0
23 TraesCS6A01G312900 chr6B 91.512 377 21 5 2812 3186 178013658 178013291 5.650000e-140 508.0
24 TraesCS6A01G312900 chr6B 89.441 322 11 5 5992 6312 604076476 604076775 9.930000e-103 385.0
25 TraesCS6A01G312900 chr6B 93.227 251 16 1 5744 5993 604075754 604076004 1.000000e-97 368.0
26 TraesCS6A01G312900 chr6B 97.778 45 1 0 2746 2790 157786699 157786655 1.890000e-10 78.7
27 TraesCS6A01G312900 chr5A 85.680 412 39 13 5131 5537 38127768 38128164 3.520000e-112 416.0
28 TraesCS6A01G312900 chr5A 89.969 319 29 2 3815 4133 38127116 38127431 5.890000e-110 409.0
29 TraesCS6A01G312900 chr5A 88.108 185 22 0 2038 2222 38126718 38126902 2.960000e-53 220.0
30 TraesCS6A01G312900 chr5A 86.842 190 23 2 1458 1646 38126531 38126719 1.780000e-50 211.0
31 TraesCS6A01G312900 chr5A 93.651 126 8 0 4732 4857 38127644 38127769 8.350000e-44 189.0
32 TraesCS6A01G312900 chr5A 80.090 221 36 6 1025 1243 38126319 38126533 2.360000e-34 158.0
33 TraesCS6A01G312900 chr5A 93.204 103 7 0 4334 4436 38127468 38127570 1.100000e-32 152.0
34 TraesCS6A01G312900 chr5A 92.982 57 2 2 2734 2790 490843745 490843691 1.460000e-11 82.4
35 TraesCS6A01G312900 chr5D 90.476 315 26 2 3819 4133 48664832 48665142 4.550000e-111 412.0
36 TraesCS6A01G312900 chr5D 83.582 402 37 12 5131 5531 48665481 48665854 3.620000e-92 350.0
37 TraesCS6A01G312900 chr5D 95.238 126 6 0 4732 4857 48665357 48665482 3.860000e-47 200.0
38 TraesCS6A01G312900 chr5D 81.944 216 33 5 1030 1243 48664034 48664245 1.810000e-40 178.0
39 TraesCS6A01G312900 chr5D 95.146 103 5 0 4334 4436 48665179 48665281 5.060000e-36 163.0
40 TraesCS6A01G312900 chr1B 90.421 261 19 4 3328 3583 30502803 30502544 7.840000e-89 339.0
41 TraesCS6A01G312900 chr1B 85.714 91 9 2 89 175 527292718 527292628 6.740000e-15 93.5
42 TraesCS6A01G312900 chr1B 100.000 40 0 0 2746 2785 181596920 181596959 2.440000e-09 75.0
43 TraesCS6A01G312900 chr1B 97.619 42 1 0 2746 2787 383057655 383057696 8.780000e-09 73.1
44 TraesCS6A01G312900 chr4B 89.804 255 21 1 3328 3577 191712487 191712741 7.890000e-84 322.0
45 TraesCS6A01G312900 chr2A 89.412 255 20 4 3328 3577 62214978 62215230 1.320000e-81 315.0
46 TraesCS6A01G312900 chr3D 88.412 233 22 3 3332 3559 614542246 614542478 6.230000e-70 276.0
47 TraesCS6A01G312900 chr3D 81.618 136 15 6 89 216 444723440 444723307 3.110000e-18 104.0
48 TraesCS6A01G312900 chr3D 91.379 58 3 2 201 258 603405260 603405205 1.890000e-10 78.7
49 TraesCS6A01G312900 chr3B 94.444 54 3 0 201 254 810338050 810338103 4.060000e-12 84.2
50 TraesCS6A01G312900 chr3B 94.444 54 3 0 201 254 810338409 810338462 4.060000e-12 84.2
51 TraesCS6A01G312900 chr3B 92.727 55 4 0 2746 2800 465971880 465971934 5.250000e-11 80.5
52 TraesCS6A01G312900 chr3B 100.000 30 0 0 130 159 52199710 52199681 8.840000e-04 56.5
53 TraesCS6A01G312900 chr7A 100.000 39 0 0 2746 2784 535920170 535920208 8.780000e-09 73.1
54 TraesCS6A01G312900 chr4D 95.556 45 2 0 2746 2790 49934624 49934580 8.780000e-09 73.1
55 TraesCS6A01G312900 chr3A 95.556 45 2 0 2746 2790 480146683 480146639 8.780000e-09 73.1
56 TraesCS6A01G312900 chr3A 92.157 51 3 1 201 250 732702805 732702855 3.160000e-08 71.3
57 TraesCS6A01G312900 chr2B 97.619 42 1 0 2746 2787 418622553 418622594 8.780000e-09 73.1
58 TraesCS6A01G312900 chr1D 87.097 62 6 1 110 169 18445942 18446003 1.140000e-07 69.4
59 TraesCS6A01G312900 chr7B 85.000 60 8 1 210 269 244201429 244201371 6.830000e-05 60.2
60 TraesCS6A01G312900 chr2D 90.476 42 4 0 205 246 343383261 343383302 8.840000e-04 56.5
61 TraesCS6A01G312900 chrUn 78.022 91 15 4 87 172 136328020 136327930 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G312900 chr6A 549530348 549536659 6311 False 11657.000000 11657 100.000000 1 6312 1 chr6A.!!$F1 6311
1 TraesCS6A01G312900 chr6A 586995878 586999303 3425 True 418.833333 1112 84.655833 1143 5417 6 chr6A.!!$R1 4274
2 TraesCS6A01G312900 chr6D 403053527 403064078 10551 False 1260.142857 4529 91.915714 1 6312 7 chr6D.!!$F2 6311
3 TraesCS6A01G312900 chr6D 94771606 94773279 1673 False 1007.000000 1190 88.591000 2078 3848 2 chr6D.!!$F1 1770
4 TraesCS6A01G312900 chr6B 603901652 603910410 8758 False 1481.600000 2743 91.113200 1 5609 5 chr6B.!!$F1 5608
5 TraesCS6A01G312900 chr6B 178012608 178014314 1706 True 694.333333 815 89.144333 2078 3848 3 chr6B.!!$R2 1770
6 TraesCS6A01G312900 chr6B 604075754 604076775 1021 False 376.500000 385 91.334000 5744 6312 2 chr6B.!!$F2 568
7 TraesCS6A01G312900 chr5A 38126319 38128164 1845 False 250.714286 416 88.220571 1025 5537 7 chr5A.!!$F1 4512
8 TraesCS6A01G312900 chr5D 48664034 48665854 1820 False 260.600000 412 89.277200 1030 5531 5 chr5D.!!$F1 4501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
770 827 0.249280 GGCCGGCCAAATAATTTCCG 60.249 55.000 40.73 0.0 39.79 4.30 F
771 828 0.458260 GCCGGCCAAATAATTTCCGT 59.542 50.000 18.11 0.0 38.54 4.69 F
1118 4373 0.477202 ATGGATGGGATGGAGGAGGG 60.477 60.000 0.00 0.0 0.00 4.30 F
2774 7775 0.097674 GTGCATGTAGCTTCCGCTTG 59.902 55.000 0.00 0.0 46.47 4.01 F
2815 7816 0.036388 GTCTGGCGAAGGGTCAATGA 60.036 55.000 0.00 0.0 0.00 2.57 F
3628 8688 0.179129 GCGGCAATGCTTATGTGCTT 60.179 50.000 4.82 0.0 38.36 3.91 F
4909 10345 1.955778 TGTCCTTGGTTTCTGCACATG 59.044 47.619 0.00 0.0 0.00 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1806 6651 1.273327 AGCAAAGCATAACCTTGTGCC 59.727 47.619 3.39 0.0 45.06 5.01 R
2125 6984 1.342975 ACCCCTTTCACAAGCTGGTTT 60.343 47.619 0.00 0.0 32.42 3.27 R
2796 7797 0.036388 TCATTGACCCTTCGCCAGAC 60.036 55.000 0.00 0.0 0.00 3.51 R
3736 8885 0.536006 AACAGCAGGGTGAAGCAGTC 60.536 55.000 5.37 0.0 29.82 3.51 R
3812 8969 1.003839 TCAACGGTAGGCTGCAAGG 60.004 57.895 4.64 0.0 0.00 3.61 R
4947 10383 0.322997 TCCCCCAACAATTACGGCAG 60.323 55.000 0.00 0.0 0.00 4.85 R
5740 11731 0.028505 CTTCATCTTCCATTGCCGCG 59.971 55.000 0.00 0.0 0.00 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 78 0.438445 CGATGCAACATCACGAACGT 59.562 50.000 8.21 0.00 0.00 3.99
67 81 3.422473 CGATGCAACATCACGAACGTTTA 60.422 43.478 0.46 0.00 0.00 2.01
69 83 4.475763 TGCAACATCACGAACGTTTATT 57.524 36.364 0.46 0.00 0.00 1.40
121 135 8.172484 TGCACATTCTACATTTTTCGTATACAC 58.828 33.333 3.32 0.00 0.00 2.90
303 330 7.432350 AAACATTGTTTCAAACACACATTGT 57.568 28.000 1.28 0.00 41.97 2.71
309 336 7.748031 TGTTTCAAACACACATTGTAACATC 57.252 32.000 0.00 0.00 40.65 3.06
317 345 9.474920 AAACACACATTGTAACATCTTTAATGG 57.525 29.630 0.00 0.00 37.51 3.16
770 827 0.249280 GGCCGGCCAAATAATTTCCG 60.249 55.000 40.73 0.00 39.79 4.30
771 828 0.458260 GCCGGCCAAATAATTTCCGT 59.542 50.000 18.11 0.00 38.54 4.69
773 830 1.066454 CCGGCCAAATAATTTCCGTCC 59.934 52.381 2.24 0.00 38.54 4.79
774 831 1.746220 CGGCCAAATAATTTCCGTCCA 59.254 47.619 2.24 0.00 35.75 4.02
775 832 2.223479 CGGCCAAATAATTTCCGTCCAG 60.223 50.000 2.24 0.00 35.75 3.86
794 851 1.503818 GCGAACGGCTCAGGTCAAAA 61.504 55.000 0.00 0.00 39.11 2.44
813 870 3.306472 AAAACAGAGCCCACTAACCAA 57.694 42.857 0.00 0.00 0.00 3.67
814 871 3.306472 AAACAGAGCCCACTAACCAAA 57.694 42.857 0.00 0.00 0.00 3.28
815 872 3.525800 AACAGAGCCCACTAACCAAAT 57.474 42.857 0.00 0.00 0.00 2.32
816 873 4.650972 AACAGAGCCCACTAACCAAATA 57.349 40.909 0.00 0.00 0.00 1.40
817 874 3.951663 ACAGAGCCCACTAACCAAATAC 58.048 45.455 0.00 0.00 0.00 1.89
820 877 5.010282 CAGAGCCCACTAACCAAATACTTT 58.990 41.667 0.00 0.00 0.00 2.66
821 878 6.177610 CAGAGCCCACTAACCAAATACTTTA 58.822 40.000 0.00 0.00 0.00 1.85
823 880 7.339466 CAGAGCCCACTAACCAAATACTTTAAT 59.661 37.037 0.00 0.00 0.00 1.40
824 881 8.554011 AGAGCCCACTAACCAAATACTTTAATA 58.446 33.333 0.00 0.00 0.00 0.98
825 882 9.350951 GAGCCCACTAACCAAATACTTTAATAT 57.649 33.333 0.00 0.00 0.00 1.28
993 4233 3.793144 CGCCAACTGCTCGAAGCC 61.793 66.667 4.73 0.00 41.51 4.35
995 4235 1.968540 GCCAACTGCTCGAAGCCTT 60.969 57.895 4.73 0.00 41.51 4.35
1028 4268 3.801997 CTTGCTCCGCCCCTCCAT 61.802 66.667 0.00 0.00 0.00 3.41
1118 4373 0.477202 ATGGATGGGATGGAGGAGGG 60.477 60.000 0.00 0.00 0.00 4.30
1120 4375 1.849823 GATGGGATGGAGGAGGGGG 60.850 68.421 0.00 0.00 0.00 5.40
1121 4376 2.346715 GATGGGATGGAGGAGGGGGA 62.347 65.000 0.00 0.00 0.00 4.81
1122 4377 1.925143 ATGGGATGGAGGAGGGGGAA 61.925 60.000 0.00 0.00 0.00 3.97
1298 6132 2.364970 TCACACCATCTTTTTGGCAAGG 59.635 45.455 0.00 0.00 40.68 3.61
1332 6166 1.421268 TCTCAGTGCAAGTCCATGGTT 59.579 47.619 12.58 0.00 0.00 3.67
1474 6313 5.049543 GTGATTGCAGATTCAAGCTAGATCC 60.050 44.000 0.00 0.00 33.84 3.36
1562 6401 2.547218 GCTTTCCTTATACCCGCGATCA 60.547 50.000 8.23 0.00 0.00 2.92
1682 6525 2.143008 TATACATGGCGCAACCGTAG 57.857 50.000 10.83 0.00 43.94 3.51
1692 6535 2.927871 GCGCAACCGTAGTCCTCTTTTA 60.928 50.000 0.30 0.00 36.67 1.52
1695 6538 4.390909 CGCAACCGTAGTCCTCTTTTAATT 59.609 41.667 0.00 0.00 0.00 1.40
1696 6539 5.577945 CGCAACCGTAGTCCTCTTTTAATTA 59.422 40.000 0.00 0.00 0.00 1.40
1815 6660 6.717289 TCTGTGTAAATATAAGGCACAAGGT 58.283 36.000 0.00 0.00 39.20 3.50
1816 6661 7.172342 TCTGTGTAAATATAAGGCACAAGGTT 58.828 34.615 0.00 0.00 39.20 3.50
1817 6662 8.322828 TCTGTGTAAATATAAGGCACAAGGTTA 58.677 33.333 0.00 0.00 39.20 2.85
1818 6663 9.120538 CTGTGTAAATATAAGGCACAAGGTTAT 57.879 33.333 0.00 0.00 39.20 1.89
1819 6664 8.898761 TGTGTAAATATAAGGCACAAGGTTATG 58.101 33.333 0.00 0.00 37.16 1.90
1820 6665 7.860872 GTGTAAATATAAGGCACAAGGTTATGC 59.139 37.037 0.00 0.00 41.29 3.14
1821 6666 7.777910 TGTAAATATAAGGCACAAGGTTATGCT 59.222 33.333 0.00 0.00 41.74 3.79
2125 6984 3.866066 GCACTAACATGAGAAGTGAGGCA 60.866 47.826 22.26 0.00 42.59 4.75
2167 7026 4.094294 GTCAATCTATTAGTTGCAACGCCA 59.906 41.667 23.21 11.91 0.00 5.69
2236 7099 6.553476 ACAAAGGGCTAAAGGTAAAGACATTT 59.447 34.615 0.00 0.00 42.04 2.32
2237 7100 7.070696 ACAAAGGGCTAAAGGTAAAGACATTTT 59.929 33.333 0.00 0.00 40.01 1.82
2249 7116 6.038714 GGTAAAGACATTTTCTGGCCTCTATG 59.961 42.308 3.32 3.41 33.46 2.23
2251 7118 5.643421 AGACATTTTCTGGCCTCTATGAT 57.357 39.130 3.32 0.00 30.62 2.45
2252 7119 6.011122 AGACATTTTCTGGCCTCTATGATT 57.989 37.500 3.32 0.00 30.62 2.57
2253 7120 6.430007 AGACATTTTCTGGCCTCTATGATTT 58.570 36.000 3.32 0.00 30.62 2.17
2292 7159 8.215926 TCAAGGAAATTTTTCTGTCGAAGTAA 57.784 30.769 3.28 0.00 37.35 2.24
2474 7444 9.823647 CCTGTCAATACTGAATTAGAGTATGTT 57.176 33.333 9.38 0.00 36.85 2.71
2589 7581 9.749490 CATGTTTTCGTGTTCGTTAGTTATTAT 57.251 29.630 0.00 0.00 38.33 1.28
2635 7627 5.471257 CAGTTCTAACACTGTCCTAAGTCC 58.529 45.833 0.00 0.00 39.59 3.85
2763 7764 4.794648 GGCAGCCCGGTGCATGTA 62.795 66.667 19.47 0.00 45.93 2.29
2764 7765 3.204827 GCAGCCCGGTGCATGTAG 61.205 66.667 13.70 0.91 43.41 2.74
2765 7766 3.204827 CAGCCCGGTGCATGTAGC 61.205 66.667 15.92 2.56 44.83 3.58
2766 7767 3.402681 AGCCCGGTGCATGTAGCT 61.403 61.111 15.92 4.82 45.94 3.32
2767 7768 2.438434 GCCCGGTGCATGTAGCTT 60.438 61.111 11.25 0.00 45.94 3.74
2768 7769 2.472909 GCCCGGTGCATGTAGCTTC 61.473 63.158 11.25 0.00 45.94 3.86
2769 7770 1.819632 CCCGGTGCATGTAGCTTCC 60.820 63.158 11.25 0.00 45.94 3.46
2771 7772 2.813179 CGGTGCATGTAGCTTCCGC 61.813 63.158 11.25 0.00 46.89 5.54
2773 7774 1.026718 GGTGCATGTAGCTTCCGCTT 61.027 55.000 5.68 0.00 46.47 4.68
2774 7775 0.097674 GTGCATGTAGCTTCCGCTTG 59.902 55.000 0.00 0.00 46.47 4.01
2775 7776 1.063166 GCATGTAGCTTCCGCTTGC 59.937 57.895 0.00 0.00 46.47 4.01
2776 7777 1.349627 CATGTAGCTTCCGCTTGCG 59.650 57.895 8.14 8.14 46.47 4.85
2777 7778 2.464459 ATGTAGCTTCCGCTTGCGC 61.464 57.895 9.71 0.00 46.47 6.09
2778 7779 3.118454 GTAGCTTCCGCTTGCGCA 61.118 61.111 5.66 5.66 46.47 6.09
2779 7780 2.815211 TAGCTTCCGCTTGCGCAG 60.815 61.111 11.31 6.32 46.47 5.18
2793 7794 4.699522 GCAGGGTCCGGCGACTTT 62.700 66.667 9.30 0.00 39.15 2.66
2794 7795 2.742372 CAGGGTCCGGCGACTTTG 60.742 66.667 9.30 4.24 39.15 2.77
2795 7796 4.016706 AGGGTCCGGCGACTTTGG 62.017 66.667 9.30 0.00 39.15 3.28
2797 7798 4.324991 GGTCCGGCGACTTTGGGT 62.325 66.667 9.30 0.00 39.15 4.51
2798 7799 2.741211 GTCCGGCGACTTTGGGTC 60.741 66.667 9.30 0.00 41.28 4.46
2799 7800 2.920912 TCCGGCGACTTTGGGTCT 60.921 61.111 9.30 0.00 42.44 3.85
2800 7801 2.742372 CCGGCGACTTTGGGTCTG 60.742 66.667 9.30 0.00 42.44 3.51
2801 7802 2.742372 CGGCGACTTTGGGTCTGG 60.742 66.667 0.00 0.00 42.44 3.86
2802 7803 3.056328 GGCGACTTTGGGTCTGGC 61.056 66.667 0.00 0.00 42.44 4.85
2803 7804 3.423154 GCGACTTTGGGTCTGGCG 61.423 66.667 0.00 0.00 42.44 5.69
2804 7805 2.342279 CGACTTTGGGTCTGGCGA 59.658 61.111 0.00 0.00 42.44 5.54
2805 7806 1.301401 CGACTTTGGGTCTGGCGAA 60.301 57.895 0.00 0.00 42.44 4.70
2806 7807 1.291877 CGACTTTGGGTCTGGCGAAG 61.292 60.000 0.00 0.00 42.44 3.79
2807 7808 0.955919 GACTTTGGGTCTGGCGAAGG 60.956 60.000 0.00 0.00 41.46 3.46
2808 7809 1.675641 CTTTGGGTCTGGCGAAGGG 60.676 63.158 0.00 0.00 0.00 3.95
2809 7810 2.411765 CTTTGGGTCTGGCGAAGGGT 62.412 60.000 0.00 0.00 0.00 4.34
2810 7811 2.406002 TTTGGGTCTGGCGAAGGGTC 62.406 60.000 0.00 0.00 0.00 4.46
2811 7812 3.319198 GGGTCTGGCGAAGGGTCA 61.319 66.667 0.00 0.00 0.00 4.02
2812 7813 2.747686 GGTCTGGCGAAGGGTCAA 59.252 61.111 0.00 0.00 0.00 3.18
2813 7814 1.299976 GGTCTGGCGAAGGGTCAAT 59.700 57.895 0.00 0.00 0.00 2.57
2814 7815 1.026718 GGTCTGGCGAAGGGTCAATG 61.027 60.000 0.00 0.00 0.00 2.82
2815 7816 0.036388 GTCTGGCGAAGGGTCAATGA 60.036 55.000 0.00 0.00 0.00 2.57
2816 7817 0.911769 TCTGGCGAAGGGTCAATGAT 59.088 50.000 0.00 0.00 0.00 2.45
2817 7818 2.115427 TCTGGCGAAGGGTCAATGATA 58.885 47.619 0.00 0.00 0.00 2.15
2818 7819 2.158957 TCTGGCGAAGGGTCAATGATAC 60.159 50.000 0.00 0.00 0.00 2.24
2819 7820 1.837439 TGGCGAAGGGTCAATGATACT 59.163 47.619 0.00 0.00 0.00 2.12
2820 7821 2.238646 TGGCGAAGGGTCAATGATACTT 59.761 45.455 2.75 2.75 0.00 2.24
2821 7822 3.452990 TGGCGAAGGGTCAATGATACTTA 59.547 43.478 3.07 0.00 0.00 2.24
2993 7996 9.269453 GAACTAATTACAGTGGTAGAAGTGTTT 57.731 33.333 0.00 0.00 35.37 2.83
3133 8137 1.271871 TGTTGCCCACTCATACCTTGG 60.272 52.381 0.00 0.00 0.00 3.61
3134 8138 0.323360 TTGCCCACTCATACCTTGGC 60.323 55.000 0.00 0.00 39.33 4.52
3135 8139 1.302949 GCCCACTCATACCTTGGCA 59.697 57.895 0.00 0.00 38.73 4.92
3136 8140 0.749454 GCCCACTCATACCTTGGCAG 60.749 60.000 0.00 0.00 38.73 4.85
3137 8141 0.620556 CCCACTCATACCTTGGCAGT 59.379 55.000 0.00 0.00 0.00 4.40
3138 8142 1.004745 CCCACTCATACCTTGGCAGTT 59.995 52.381 0.00 0.00 0.00 3.16
3139 8143 2.238646 CCCACTCATACCTTGGCAGTTA 59.761 50.000 0.00 0.00 0.00 2.24
3300 8345 2.515854 TGTCACACCTGACCTCTCTAC 58.484 52.381 0.00 0.00 45.68 2.59
3443 8492 3.070590 TCAGGTATGTCATCATCTGGCAG 59.929 47.826 8.58 8.58 44.15 4.85
3491 8544 7.066766 CAGCCTTTAACTTTCTGCTGAGATTAT 59.933 37.037 3.33 0.00 46.88 1.28
3519 8577 6.889177 TGTCCTGGAATTGTTATGCAGAATAA 59.111 34.615 5.70 5.70 38.38 1.40
3578 8636 5.726793 AGGGTTAGTGGATCTGTTATTCAGT 59.273 40.000 0.00 0.00 43.97 3.41
3594 8654 8.160765 TGTTATTCAGTCTATTCAAACTTCCCA 58.839 33.333 0.00 0.00 0.00 4.37
3628 8688 0.179129 GCGGCAATGCTTATGTGCTT 60.179 50.000 4.82 0.00 38.36 3.91
3634 8694 4.426416 GCAATGCTTATGTGCTTTCATCA 58.574 39.130 0.00 0.00 35.36 3.07
3736 8885 7.512992 AGATGACTCTGAATTAAAGGTATGGG 58.487 38.462 0.00 0.00 0.00 4.00
3768 8917 2.339418 CTGCTGTTCAGCTCTCTTCTG 58.661 52.381 22.44 0.00 35.78 3.02
3781 8931 6.206243 CAGCTCTCTTCTGAAGGAAATTTTGA 59.794 38.462 16.83 3.42 33.54 2.69
3812 8969 8.718102 TTAGTATGAGAACTAACTTTGATGCC 57.282 34.615 0.00 0.00 37.10 4.40
4095 9253 3.260475 AGCGGTATCTTATTGTGCACA 57.740 42.857 17.42 17.42 0.00 4.57
4207 9450 2.892215 CCCGACTAACCTAGGGATCTTC 59.108 54.545 14.81 1.78 46.64 2.87
4318 9563 6.169557 TCTCACCTTTGCTAACTTGACTTA 57.830 37.500 0.00 0.00 0.00 2.24
4489 9815 5.109903 GTCTGGCTACGAAGTCAATATTGT 58.890 41.667 14.97 0.00 43.93 2.71
4498 9824 6.734137 ACGAAGTCAATATTGTTTTCAAGCA 58.266 32.000 22.43 1.31 39.20 3.91
4639 10003 3.627577 ACGAGTTCAGTGAAAAGCATGTT 59.372 39.130 7.25 0.00 0.00 2.71
4654 10018 2.604462 GCATGTTCCAAAATCGCAATCC 59.396 45.455 0.00 0.00 0.00 3.01
4685 10049 4.402155 TGAGTGTTTCTTTTGCAACTCCAT 59.598 37.500 0.00 0.00 0.00 3.41
4905 10341 2.297701 GTTCTGTCCTTGGTTTCTGCA 58.702 47.619 0.00 0.00 0.00 4.41
4909 10345 1.955778 TGTCCTTGGTTTCTGCACATG 59.044 47.619 0.00 0.00 0.00 3.21
4911 10347 2.362077 GTCCTTGGTTTCTGCACATGTT 59.638 45.455 0.00 0.00 0.00 2.71
4935 10371 6.586868 TGTGCTCAACATTTTGTTTCATTC 57.413 33.333 0.00 0.00 38.77 2.67
4979 10415 5.522315 TGTTGGGGGACATTATGTTTCTA 57.478 39.130 0.00 0.00 0.00 2.10
4988 10424 7.014615 GGGGACATTATGTTTCTATGCATTTCT 59.985 37.037 3.54 0.00 0.00 2.52
5035 10471 9.872757 TTAAACTTACAAAATCTTAAGCTGTCG 57.127 29.630 0.00 0.00 0.00 4.35
5244 11211 0.391661 GACGGCAGAAAGAGGCATGA 60.392 55.000 0.00 0.00 0.00 3.07
5246 11213 0.449388 CGGCAGAAAGAGGCATGAAC 59.551 55.000 0.00 0.00 0.00 3.18
5421 11407 6.040278 TGTTTGGATGTCATGTATGTTGTGTT 59.960 34.615 0.00 0.00 0.00 3.32
5564 11555 2.473760 CGTGTTGCAACGGGTTCCA 61.474 57.895 23.79 2.19 39.89 3.53
5663 11654 0.104304 CCTGGTTTCGATAGTCCCGG 59.896 60.000 0.00 0.00 37.40 5.73
5667 11658 3.435030 TTTCGATAGTCCCGGCGGC 62.435 63.158 23.20 8.14 37.40 6.53
5694 11685 1.541588 GAAGAAAAGCCCATGAACGCT 59.458 47.619 0.00 0.00 36.74 5.07
5710 11701 0.108898 CGCTGGTGAGAACTCCTCTG 60.109 60.000 0.00 0.00 42.44 3.35
5711 11702 0.248843 GCTGGTGAGAACTCCTCTGG 59.751 60.000 0.00 0.00 42.44 3.86
5886 14100 3.247006 TCGAGTTCATAAACCAGCTCC 57.753 47.619 0.00 0.00 35.92 4.70
5921 14135 3.334583 AGCTTGAGCCGTTTCTATTCA 57.665 42.857 0.00 0.00 43.38 2.57
5940 14154 0.385390 AACTCGCCAAAACAAGCTGG 59.615 50.000 0.00 0.00 35.67 4.85
5994 14692 5.564550 TGAGTACTACCTCCGTTTCTAAGT 58.435 41.667 0.00 0.00 0.00 2.24
6059 14757 3.512329 TCGGCTTGAACCACTTGTCTATA 59.488 43.478 0.00 0.00 0.00 1.31
6116 14814 0.961019 TCCTGCAGACAAACAATGCC 59.039 50.000 17.39 0.00 39.22 4.40
6128 14826 6.646240 AGACAAACAATGCCAAATATGTCAAC 59.354 34.615 0.00 0.00 38.64 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 78 8.746052 AAATTACACATGGATCGAGGAATAAA 57.254 30.769 0.00 0.00 0.00 1.40
67 81 7.645058 AAAAATTACACATGGATCGAGGAAT 57.355 32.000 0.00 0.00 0.00 3.01
277 292 9.160496 ACAATGTGTGTTTGAAACAATGTTTAT 57.840 25.926 12.89 0.00 44.16 1.40
369 397 8.472007 AATATGTTCGGGCCATTTCTTTAATA 57.528 30.769 4.39 0.00 0.00 0.98
371 399 6.783708 AATATGTTCGGGCCATTTCTTTAA 57.216 33.333 4.39 0.00 0.00 1.52
387 415 8.838452 TGTTTACGTGTTTCGAAAAATATGTT 57.162 26.923 13.10 0.00 42.86 2.71
440 468 9.665719 AATTCAAAGAAATGTTTTGTACCACTT 57.334 25.926 0.00 0.00 36.97 3.16
585 619 8.424731 CGAATTTGAAAAATGTTAAGTAGTGGC 58.575 33.333 0.00 0.00 0.00 5.01
586 620 9.672086 TCGAATTTGAAAAATGTTAAGTAGTGG 57.328 29.630 0.00 0.00 0.00 4.00
775 832 1.503818 TTTTGACCTGAGCCGTTCGC 61.504 55.000 0.00 0.00 37.98 4.70
794 851 3.306472 TTTGGTTAGTGGGCTCTGTTT 57.694 42.857 0.00 0.00 0.00 2.83
813 870 8.403236 GTTCCACGCTTCCAATATTAAAGTATT 58.597 33.333 10.04 0.00 0.00 1.89
814 871 7.254658 CGTTCCACGCTTCCAATATTAAAGTAT 60.255 37.037 10.04 0.00 33.65 2.12
815 872 6.036300 CGTTCCACGCTTCCAATATTAAAGTA 59.964 38.462 10.04 0.00 33.65 2.24
816 873 5.163794 CGTTCCACGCTTCCAATATTAAAGT 60.164 40.000 10.04 0.00 33.65 2.66
817 874 5.263185 CGTTCCACGCTTCCAATATTAAAG 58.737 41.667 5.71 5.71 33.65 1.85
912 4152 0.655733 CGGAAGACGCTGTTTGTGTT 59.344 50.000 0.00 0.00 39.84 3.32
993 4233 3.367703 GCAAGGATTTGACCATGTCCAAG 60.368 47.826 1.10 0.00 36.36 3.61
995 4235 2.170166 GCAAGGATTTGACCATGTCCA 58.830 47.619 1.10 0.00 36.36 4.02
1028 4268 3.584848 CTCCTTTTCTTCCTCTTCCTCCA 59.415 47.826 0.00 0.00 0.00 3.86
1118 4373 2.822561 CCCTTCTGCTCTTTCTTTTCCC 59.177 50.000 0.00 0.00 0.00 3.97
1120 4375 2.887152 TGCCCTTCTGCTCTTTCTTTTC 59.113 45.455 0.00 0.00 0.00 2.29
1121 4376 2.949447 TGCCCTTCTGCTCTTTCTTTT 58.051 42.857 0.00 0.00 0.00 2.27
1122 4377 2.664402 TGCCCTTCTGCTCTTTCTTT 57.336 45.000 0.00 0.00 0.00 2.52
1298 6132 5.111989 TGCACTGAGAATAGAAGCATGTAC 58.888 41.667 0.00 0.00 31.26 2.90
1332 6166 6.969366 ACGAGATCATTCACAAAAACATTCA 58.031 32.000 0.00 0.00 0.00 2.57
1438 6277 1.872952 TGCAATCACGAGAACAACCAG 59.127 47.619 0.00 0.00 0.00 4.00
1474 6313 6.425210 TCTCCTACCATCAAATGAGGTATG 57.575 41.667 10.27 8.76 37.28 2.39
1562 6401 0.110238 CGCGCATTGTGTAGCAGTTT 60.110 50.000 8.75 0.00 0.00 2.66
1666 6509 1.740296 GACTACGGTTGCGCCATGT 60.740 57.895 4.18 0.24 36.97 3.21
1672 6515 1.792006 AAAAGAGGACTACGGTTGCG 58.208 50.000 0.00 0.00 0.00 4.85
1728 6573 9.938280 ACATCTGATTTTGATTGTTTCATTCAT 57.062 25.926 0.00 0.00 33.34 2.57
1806 6651 1.273327 AGCAAAGCATAACCTTGTGCC 59.727 47.619 3.39 0.00 45.06 5.01
1858 6708 6.065619 GCAAATGCAAATTGAAAGGCACTTC 61.066 40.000 17.08 0.00 45.20 3.01
2022 6880 6.220201 TCGTGTGTCTAGAACAAATGAATGA 58.780 36.000 0.00 0.00 38.04 2.57
2023 6881 6.466308 TCGTGTGTCTAGAACAAATGAATG 57.534 37.500 0.00 0.00 38.04 2.67
2024 6882 6.650807 ACATCGTGTGTCTAGAACAAATGAAT 59.349 34.615 21.91 10.51 42.99 2.57
2025 6883 5.989168 ACATCGTGTGTCTAGAACAAATGAA 59.011 36.000 21.91 7.90 42.99 2.57
2125 6984 1.342975 ACCCCTTTCACAAGCTGGTTT 60.343 47.619 0.00 0.00 32.42 3.27
2167 7026 1.919600 GATGGTCCAGAAGCCTGCCT 61.920 60.000 0.00 0.00 39.07 4.75
2264 7131 6.072112 TCGACAGAAAAATTTCCTTGAAGG 57.928 37.500 4.45 4.45 37.92 3.46
2292 7159 3.504134 TGTGGTAACTTAAACATGCGCAT 59.496 39.130 19.28 19.28 37.61 4.73
2406 7305 5.601313 ACAAGAAAAGGGTAGACTGTAGACA 59.399 40.000 0.00 0.00 0.00 3.41
2474 7444 7.345691 TGGAATAATGTAGGCTGAGATTTCAA 58.654 34.615 0.00 0.00 31.69 2.69
2551 7539 6.196571 ACACGAAAACATGTAACAAGCTAAC 58.803 36.000 0.00 0.00 0.00 2.34
2635 7627 7.730364 ACACTTGGTCAGAGTTAAAATAGTG 57.270 36.000 0.00 0.00 36.32 2.74
2746 7747 4.794648 TACATGCACCGGGCTGCC 62.795 66.667 11.05 11.05 45.15 4.85
2747 7748 3.204827 CTACATGCACCGGGCTGC 61.205 66.667 6.32 8.50 45.15 5.25
2748 7749 3.204827 GCTACATGCACCGGGCTG 61.205 66.667 6.32 9.21 45.15 4.85
2749 7750 2.876368 GAAGCTACATGCACCGGGCT 62.876 60.000 6.32 0.00 45.94 5.19
2750 7751 2.438434 AAGCTACATGCACCGGGC 60.438 61.111 6.32 7.25 45.94 6.13
2751 7752 1.819632 GGAAGCTACATGCACCGGG 60.820 63.158 6.32 0.00 45.94 5.73
2752 7753 3.813596 GGAAGCTACATGCACCGG 58.186 61.111 0.00 0.00 45.94 5.28
2776 7777 4.699522 AAAGTCGCCGGACCCTGC 62.700 66.667 5.05 0.00 44.54 4.85
2777 7778 2.742372 CAAAGTCGCCGGACCCTG 60.742 66.667 5.05 0.00 44.54 4.45
2778 7779 4.016706 CCAAAGTCGCCGGACCCT 62.017 66.667 5.05 0.00 44.54 4.34
2780 7781 4.324991 ACCCAAAGTCGCCGGACC 62.325 66.667 5.05 0.00 44.54 4.46
2781 7782 2.741211 GACCCAAAGTCGCCGGAC 60.741 66.667 5.05 0.00 43.76 4.79
2788 7789 0.955919 CCTTCGCCAGACCCAAAGTC 60.956 60.000 0.00 0.00 46.71 3.01
2789 7790 1.073199 CCTTCGCCAGACCCAAAGT 59.927 57.895 0.00 0.00 0.00 2.66
2790 7791 1.675641 CCCTTCGCCAGACCCAAAG 60.676 63.158 0.00 0.00 0.00 2.77
2791 7792 2.406002 GACCCTTCGCCAGACCCAAA 62.406 60.000 0.00 0.00 0.00 3.28
2792 7793 2.852075 ACCCTTCGCCAGACCCAA 60.852 61.111 0.00 0.00 0.00 4.12
2793 7794 3.319198 GACCCTTCGCCAGACCCA 61.319 66.667 0.00 0.00 0.00 4.51
2794 7795 2.198304 ATTGACCCTTCGCCAGACCC 62.198 60.000 0.00 0.00 0.00 4.46
2795 7796 1.026718 CATTGACCCTTCGCCAGACC 61.027 60.000 0.00 0.00 0.00 3.85
2796 7797 0.036388 TCATTGACCCTTCGCCAGAC 60.036 55.000 0.00 0.00 0.00 3.51
2797 7798 0.911769 ATCATTGACCCTTCGCCAGA 59.088 50.000 0.00 0.00 0.00 3.86
2798 7799 2.158900 AGTATCATTGACCCTTCGCCAG 60.159 50.000 0.00 0.00 0.00 4.85
2799 7800 1.837439 AGTATCATTGACCCTTCGCCA 59.163 47.619 0.00 0.00 0.00 5.69
2800 7801 2.622064 AGTATCATTGACCCTTCGCC 57.378 50.000 0.00 0.00 0.00 5.54
2801 7802 6.260050 TGAAATAAGTATCATTGACCCTTCGC 59.740 38.462 3.61 0.00 0.00 4.70
2802 7803 7.786178 TGAAATAAGTATCATTGACCCTTCG 57.214 36.000 3.61 0.00 0.00 3.79
2803 7804 9.342308 TCATGAAATAAGTATCATTGACCCTTC 57.658 33.333 0.00 0.00 34.12 3.46
2804 7805 9.699410 TTCATGAAATAAGTATCATTGACCCTT 57.301 29.630 5.45 0.00 34.12 3.95
2805 7806 9.872684 ATTCATGAAATAAGTATCATTGACCCT 57.127 29.630 13.09 0.00 34.12 4.34
2920 7922 4.397420 ACAAACAGCATTGTATCCACTGA 58.603 39.130 1.28 0.00 41.56 3.41
3133 8137 6.039781 CAAAATATGCCATTTGCTAACTGC 57.960 37.500 0.00 0.00 42.00 4.40
3159 8163 1.841103 TGGGCAGACCAGCACAGTA 60.841 57.895 0.00 0.00 44.33 2.74
3491 8544 4.148079 TGCATAACAATTCCAGGACACAA 58.852 39.130 0.00 0.00 0.00 3.33
3519 8577 3.067320 GGCAGAAAAGAGAACAGTTTGCT 59.933 43.478 3.09 0.00 0.00 3.91
3578 8636 9.367160 AGAGAAAATTTGGGAAGTTTGAATAGA 57.633 29.630 0.00 0.00 33.62 1.98
3594 8654 4.799564 TTGCCGCCAATAGAGAAAATTT 57.200 36.364 0.00 0.00 0.00 1.82
3607 8667 1.808546 CACATAAGCATTGCCGCCA 59.191 52.632 4.70 0.00 0.00 5.69
3628 8688 6.506147 CAAAATCTTCAACCTGTGTGATGAA 58.494 36.000 0.00 0.00 0.00 2.57
3634 8694 4.734398 TTGCAAAATCTTCAACCTGTGT 57.266 36.364 0.00 0.00 0.00 3.72
3736 8885 0.536006 AACAGCAGGGTGAAGCAGTC 60.536 55.000 5.37 0.00 29.82 3.51
3789 8944 6.069963 AGGGCATCAAAGTTAGTTCTCATACT 60.070 38.462 0.00 0.00 0.00 2.12
3812 8969 1.003839 TCAACGGTAGGCTGCAAGG 60.004 57.895 4.64 0.00 0.00 3.61
3910 9067 4.327680 ACCTTCACCTTCTGCTTCATAAC 58.672 43.478 0.00 0.00 0.00 1.89
4207 9450 6.238484 GCACAATATAGTCCTAAACAAGGCAG 60.238 42.308 0.00 0.00 46.10 4.85
4498 9824 8.225603 ACTGTACAAGATTCATGTTTCAAAGT 57.774 30.769 0.00 0.00 32.27 2.66
4582 9943 1.305219 TATTGGACGCCTGCAAGCAC 61.305 55.000 8.26 0.54 30.24 4.40
4639 10003 4.202202 ACAAGTTTGGATTGCGATTTTGGA 60.202 37.500 0.00 0.00 0.00 3.53
4654 10018 5.404968 TGCAAAAGAAACACTCACAAGTTTG 59.595 36.000 0.00 0.00 38.01 2.93
4685 10049 6.852420 ATACTACACTTTTAGACAGCAGGA 57.148 37.500 0.00 0.00 0.00 3.86
4713 10077 3.679389 TCTCCTGATCCAAAACTTGAGC 58.321 45.455 0.00 0.00 0.00 4.26
4717 10081 7.365497 ACAATTTTCTCCTGATCCAAAACTT 57.635 32.000 0.00 0.00 0.00 2.66
4727 10091 2.892852 CCCAGCAACAATTTTCTCCTGA 59.107 45.455 0.00 0.00 0.00 3.86
4905 10341 5.177326 ACAAAATGTTGAGCACAAACATGT 58.823 33.333 1.62 0.00 39.50 3.21
4909 10345 6.163159 TGAAACAAAATGTTGAGCACAAAC 57.837 33.333 1.62 0.00 40.14 2.93
4911 10347 6.036953 GGAATGAAACAAAATGTTGAGCACAA 59.963 34.615 1.62 0.00 40.14 3.33
4935 10371 1.234821 TACGGCAGTTTCAGCTTTGG 58.765 50.000 0.00 0.00 0.00 3.28
4947 10383 0.322997 TCCCCCAACAATTACGGCAG 60.323 55.000 0.00 0.00 0.00 4.85
4979 10415 3.199508 AGCCAGAGTACAGAGAAATGCAT 59.800 43.478 0.00 0.00 0.00 3.96
4988 10424 9.216117 GTTTAAGAAAAATAGCCAGAGTACAGA 57.784 33.333 0.00 0.00 0.00 3.41
5035 10471 8.045176 AGGAAATAACAGATGTGCTTTTACTC 57.955 34.615 0.00 0.00 0.00 2.59
5244 11211 1.787058 AGGGGTTTGAAGGGCTAAGTT 59.213 47.619 0.00 0.00 0.00 2.66
5246 11213 3.555966 CATAGGGGTTTGAAGGGCTAAG 58.444 50.000 0.00 0.00 0.00 2.18
5564 11555 6.567891 TTCGTCGCGATATCAATCTATTGAGT 60.568 38.462 14.06 3.02 41.82 3.41
5667 11658 2.561373 GGCTTTTCTTCGCCACCG 59.439 61.111 0.00 0.00 45.59 4.94
5672 11663 1.729149 CGTTCATGGGCTTTTCTTCGC 60.729 52.381 0.00 0.00 0.00 4.70
5673 11664 1.729149 GCGTTCATGGGCTTTTCTTCG 60.729 52.381 0.00 0.00 0.00 3.79
5676 11667 0.883833 CAGCGTTCATGGGCTTTTCT 59.116 50.000 4.42 0.00 37.41 2.52
5677 11668 0.109132 CCAGCGTTCATGGGCTTTTC 60.109 55.000 4.42 0.00 37.41 2.29
5694 11685 2.251818 CTTCCAGAGGAGTTCTCACCA 58.748 52.381 0.06 0.00 44.81 4.17
5740 11731 0.028505 CTTCATCTTCCATTGCCGCG 59.971 55.000 0.00 0.00 0.00 6.46
5812 14025 1.000396 GGCTGAGGCATTCCAGGTT 60.000 57.895 0.00 0.00 40.87 3.50
5813 14026 2.233566 TGGCTGAGGCATTCCAGGT 61.234 57.895 3.93 0.00 40.87 4.00
5886 14100 4.742138 GCTCAAGCTAAAGGGGAGTATGAG 60.742 50.000 0.00 0.00 38.21 2.90
5921 14135 0.385390 CCAGCTTGTTTTGGCGAGTT 59.615 50.000 0.00 0.00 0.00 3.01
5940 14154 0.534203 TTGTGTTTCGCCAGGGAGAC 60.534 55.000 0.00 0.00 0.00 3.36
5994 14692 4.833380 GGTGCCTAGTGGTCAGATATCTTA 59.167 45.833 1.33 0.00 35.27 2.10
6106 14804 7.424227 AAGTTGACATATTTGGCATTGTTTG 57.576 32.000 0.00 0.00 41.66 2.93
6116 14814 6.142817 GGCGGCTTATAAGTTGACATATTTG 58.857 40.000 13.91 0.00 0.00 2.32
6128 14826 2.787601 TACTCGTGGCGGCTTATAAG 57.212 50.000 11.43 8.20 0.00 1.73
6133 14831 2.431942 CGTTACTCGTGGCGGCTT 60.432 61.111 11.43 0.00 34.52 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.