AutoCloner

Multiple sequence alignment - TraesCS6A01G312700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G312700	chr6A	100.000	2228	0	0	1	2228	549403225	549400998	0.000000e+00	4115.0
1	TraesCS6A01G312700	chr6A	95.624	914	30	3	1	913	614988294	614987390	0.000000e+00	1458.0
2	TraesCS6A01G312700	chr7A	96.721	915	26	2	1	914	655441249	655442160	0.000000e+00	1520.0
3	TraesCS6A01G312700	chr7A	95.671	924	26	2	1	913	177003428	177004348	0.000000e+00	1472.0
4	TraesCS6A01G312700	chr7A	92.288	778	25	15	138	913	671217918	671218662	0.000000e+00	1072.0
5	TraesCS6A01G312700	chr7A	97.917	144	3	0	1	144	671213215	671213358	1.320000e-62	250.0
6	TraesCS6A01G312700	chr5A	96.284	915	30	2	1	914	561681953	561682864	0.000000e+00	1498.0
7	TraesCS6A01G312700	chr5A	79.167	168	28	7	751	915	12826924	12827087	2.340000e-20	110.0
8	TraesCS6A01G312700	chr3A	96.280	914	30	2	1	913	641813313	641812403	0.000000e+00	1496.0
9	TraesCS6A01G312700	chr3A	95.301	915	39	2	1	914	65795853	65796764	0.000000e+00	1448.0
10	TraesCS6A01G312700	chr3A	82.867	286	41	8	633	913	158003162	158003444	1.320000e-62	250.0
11	TraesCS6A01G312700	chr2D	91.734	871	46	17	1	863	174238683	174239535	0.000000e+00	1186.0
12	TraesCS6A01G312700	chr5B	89.708	719	65	5	1	717	486363490	486364201	0.000000e+00	909.0
13	TraesCS6A01G312700	chr4D	93.087	622	39	3	1611	2228	121195356	121195977	0.000000e+00	907.0
14	TraesCS6A01G312700	chr3D	92.765	622	40	4	1611	2228	430187320	430186700	0.000000e+00	894.0
15	TraesCS6A01G312700	chr3D	92.122	622	43	5	1612	2228	12459659	12460279	0.000000e+00	872.0
16	TraesCS6A01G312700	chr2B	92.628	624	42	3	1609	2228	1366329	1365706	0.000000e+00	894.0
17	TraesCS6A01G312700	chr6D	92.616	623	42	3	1610	2228	160434796	160434174	0.000000e+00	893.0
18	TraesCS6A01G312700	chr6D	91.506	624	48	4	1610	2228	362922163	362922786	0.000000e+00	854.0
19	TraesCS6A01G312700	chr6D	93.617	376	21	3	917	1291	402963073	402962700	1.930000e-155	558.0
20	TraesCS6A01G312700	chr6D	92.473	186	12	1	1427	1610	402948313	402948128	4.720000e-67	265.0
21	TraesCS6A01G312700	chr2A	92.283	622	44	3	1611	2228	195328497	195327876	0.000000e+00	880.0
22	TraesCS6A01G312700	chr2A	91.961	622	46	3	1611	2228	678990593	678991214	0.000000e+00	869.0
23	TraesCS6A01G312700	chr2A	81.328	241	39	6	676	913	710046949	710046712	8.120000e-45	191.0
24	TraesCS6A01G312700	chr1D	91.388	627	47	6	1607	2228	204025499	204026123	0.000000e+00	852.0
25	TraesCS6A01G312700	chr6B	89.879	494	35	11	913	1394	603794312	603793822	2.430000e-174	621.0
26	TraesCS6A01G312700	chr6B	92.344	209	14	2	1396	1603	603792942	603792735	1.670000e-76	296.0
27	TraesCS6A01G312700	chr5D	90.741	54	5	0	1195	1248	388539356	388539409	3.070000e-09	73.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G312700	chr6A	549400998	549403225	2227	True	4115.0	4115	100.0000	1	2228	1	chr6A.!!$R1	2227
1	TraesCS6A01G312700	chr6A	614987390	614988294	904	True	1458.0	1458	95.6240	1	913	1	chr6A.!!$R2	912
2	TraesCS6A01G312700	chr7A	655441249	655442160	911	False	1520.0	1520	96.7210	1	914	1	chr7A.!!$F2	913
3	TraesCS6A01G312700	chr7A	177003428	177004348	920	False	1472.0	1472	95.6710	1	913	1	chr7A.!!$F1	912
4	TraesCS6A01G312700	chr7A	671217918	671218662	744	False	1072.0	1072	92.2880	138	913	1	chr7A.!!$F4	775
5	TraesCS6A01G312700	chr5A	561681953	561682864	911	False	1498.0	1498	96.2840	1	914	1	chr5A.!!$F2	913
6	TraesCS6A01G312700	chr3A	641812403	641813313	910	True	1496.0	1496	96.2800	1	913	1	chr3A.!!$R1	912
7	TraesCS6A01G312700	chr3A	65795853	65796764	911	False	1448.0	1448	95.3010	1	914	1	chr3A.!!$F1	913
8	TraesCS6A01G312700	chr2D	174238683	174239535	852	False	1186.0	1186	91.7340	1	863	1	chr2D.!!$F1	862
9	TraesCS6A01G312700	chr5B	486363490	486364201	711	False	909.0	909	89.7080	1	717	1	chr5B.!!$F1	716
10	TraesCS6A01G312700	chr4D	121195356	121195977	621	False	907.0	907	93.0870	1611	2228	1	chr4D.!!$F1	617
11	TraesCS6A01G312700	chr3D	430186700	430187320	620	True	894.0	894	92.7650	1611	2228	1	chr3D.!!$R1	617
12	TraesCS6A01G312700	chr3D	12459659	12460279	620	False	872.0	872	92.1220	1612	2228	1	chr3D.!!$F1	616
13	TraesCS6A01G312700	chr2B	1365706	1366329	623	True	894.0	894	92.6280	1609	2228	1	chr2B.!!$R1	619
14	TraesCS6A01G312700	chr6D	160434174	160434796	622	True	893.0	893	92.6160	1610	2228	1	chr6D.!!$R1	618
15	TraesCS6A01G312700	chr6D	362922163	362922786	623	False	854.0	854	91.5060	1610	2228	1	chr6D.!!$F1	618
16	TraesCS6A01G312700	chr2A	195327876	195328497	621	True	880.0	880	92.2830	1611	2228	1	chr2A.!!$R1	617
17	TraesCS6A01G312700	chr2A	678990593	678991214	621	False	869.0	869	91.9610	1611	2228	1	chr2A.!!$F1	617
18	TraesCS6A01G312700	chr1D	204025499	204026123	624	False	852.0	852	91.3880	1607	2228	1	chr1D.!!$F1	621
19	TraesCS6A01G312700	chr6B	603792735	603794312	1577	True	458.5	621	91.1115	913	1603	2	chr6B.!!$R1	690

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
853	871	0.034198	TCAAGCGAACCGATCCAACA	59.966	50.0	0.0	0.0	0.0	3.33	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1757	2663	0.962356	CAGCGCCCCTTCATCAACTT	60.962	55.0	2.29	0.0	0.0	2.66	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
104	105	1.152984	CCACCGCCAATCCATGCTA	60.153	57.895	0.00	0.00	0.00	3.49
301	302	2.041265	GGGCCAAGAGGAGGGAGA	59.959	66.667	4.39	0.00	36.89	3.71
454	466	4.812476	CCGCCTGCGATTCCGTGA	62.812	66.667	13.94	0.00	42.83	4.35
493	505	2.825264	GGGGATGAGAAGCGGGAG	59.175	66.667	0.00	0.00	0.00	4.30
494	506	2.812619	GGGGATGAGAAGCGGGAGG	61.813	68.421	0.00	0.00	0.00	4.30
495	507	1.762460	GGGATGAGAAGCGGGAGGA	60.762	63.158	0.00	0.00	0.00	3.71
730	746	1.671901	CGGCGGCCACCCAATTTTAT	61.672	55.000	20.71	0.00	0.00	1.40
743	759	2.425312	CAATTTTATAGGCGGTGGCACA	59.575	45.455	20.82	0.00	42.47	4.57
810	828	2.680352	ACGAGGTCATCCAGCGGT	60.680	61.111	0.00	0.00	37.83	5.68
813	831	1.596934	GAGGTCATCCAGCGGTTCA	59.403	57.895	0.00	0.00	35.89	3.18
853	871	0.034198	TCAAGCGAACCGATCCAACA	59.966	50.000	0.00	0.00	0.00	3.33
915	933	8.421249	ACATCCTTCTCTTATCTCTTGATAGG	57.579	38.462	0.00	0.00	36.62	2.57
925	943	5.543507	ATCTCTTGATAGGTAGCTTGTGG	57.456	43.478	0.00	0.00	0.00	4.17
930	948	2.576191	TGATAGGTAGCTTGTGGGCTTT	59.424	45.455	0.00	0.00	42.97	3.51
933	951	0.881796	GGTAGCTTGTGGGCTTTGTC	59.118	55.000	0.00	0.00	42.97	3.18
947	965	5.241506	TGGGCTTTGTCAATCAGAAAGTTAG	59.758	40.000	0.00	0.00	0.00	2.34
948	966	5.241728	GGGCTTTGTCAATCAGAAAGTTAGT	59.758	40.000	0.00	0.00	0.00	2.24
949	967	6.430000	GGGCTTTGTCAATCAGAAAGTTAGTA	59.570	38.462	0.00	0.00	0.00	1.82
950	968	7.298854	GGCTTTGTCAATCAGAAAGTTAGTAC	58.701	38.462	0.00	0.00	0.00	2.73
951	969	7.298854	GCTTTGTCAATCAGAAAGTTAGTACC	58.701	38.462	0.00	0.00	0.00	3.34
954	972	6.228258	TGTCAATCAGAAAGTTAGTACCACC	58.772	40.000	0.00	0.00	0.00	4.61
955	973	6.183361	TGTCAATCAGAAAGTTAGTACCACCA	60.183	38.462	0.00	0.00	0.00	4.17
956	974	6.147328	GTCAATCAGAAAGTTAGTACCACCAC	59.853	42.308	0.00	0.00	0.00	4.16
957	975	5.818678	ATCAGAAAGTTAGTACCACCACA	57.181	39.130	0.00	0.00	0.00	4.17
958	976	5.818678	TCAGAAAGTTAGTACCACCACAT	57.181	39.130	0.00	0.00	0.00	3.21
959	977	5.790593	TCAGAAAGTTAGTACCACCACATC	58.209	41.667	0.00	0.00	0.00	3.06
960	978	5.542635	TCAGAAAGTTAGTACCACCACATCT	59.457	40.000	0.00	0.00	0.00	2.90
991	1014	1.676014	CGAAGATGCTCGGGAAGGTTT	60.676	52.381	0.00	0.00	35.14	3.27
993	1016	3.606687	GAAGATGCTCGGGAAGGTTTTA	58.393	45.455	0.00	0.00	0.00	1.52
1024	1047	2.299867	GTTTTGGTTCTCATGGCCATGT	59.700	45.455	38.18	9.62	39.72	3.21
1026	1049	0.392863	TGGTTCTCATGGCCATGTCG	60.393	55.000	38.18	29.99	39.72	4.35
1027	1050	0.107703	GGTTCTCATGGCCATGTCGA	60.108	55.000	38.18	31.41	39.72	4.20
1032	1055	1.153309	CATGGCCATGTCGAGCTCA	60.153	57.895	33.68	0.00	34.23	4.26
1067	1090	0.234884	GCGAGGCCATTGTTATACGC	59.765	55.000	5.01	4.12	38.23	4.42
1077	1100	0.461135	TGTTATACGCCGAGGAACCC	59.539	55.000	0.00	0.00	0.00	4.11
1087	1110	3.952799	GAGGAACCCTCCCCTGGCT	62.953	68.421	1.60	0.00	44.36	4.75
1102	1125	2.332654	GGCTGTTCCGTCCGCATTT	61.333	57.895	0.00	0.00	0.00	2.32
1157	1180	1.971695	TGCTTCTGTCGCTCGAGGA	60.972	57.895	15.58	7.04	0.00	3.71
1180	1204	3.224007	AAGACGGGGCCAGGCAAAT	62.224	57.895	13.40	0.00	0.00	2.32
1192	1216	1.602323	GGCAAATCGTGTGGACCCA	60.602	57.895	0.00	0.00	0.00	4.51
1202	1226	1.150536	GTGGACCCAGAAGCACCAA	59.849	57.895	0.00	0.00	32.32	3.67
1208	1232	1.272480	ACCCAGAAGCACCAATAACCC	60.272	52.381	0.00	0.00	0.00	4.11
1212	1236	3.694566	CCAGAAGCACCAATAACCCTAAC	59.305	47.826	0.00	0.00	0.00	2.34
1269	1293	0.449388	CAGCAAATTCTCGTGGCTCC	59.551	55.000	0.00	0.00	31.30	4.70
1270	1294	0.326264	AGCAAATTCTCGTGGCTCCT	59.674	50.000	0.00	0.00	0.00	3.69
1285	1309	2.806945	CTCCTATGGAGCCAAACCAA	57.193	50.000	0.27	0.00	43.29	3.67
1293	1317	7.181845	TCCTATGGAGCCAAACCAAAAATTATT	59.818	33.333	0.00	0.00	40.93	1.40
1295	1319	6.874288	TGGAGCCAAACCAAAAATTATTTG	57.126	33.333	0.00	6.27	34.25	2.32
1296	1320	6.595682	TGGAGCCAAACCAAAAATTATTTGA	58.404	32.000	12.02	0.00	34.62	2.69
1297	1321	6.484977	TGGAGCCAAACCAAAAATTATTTGAC	59.515	34.615	12.02	0.00	34.62	3.18
1298	1322	6.710295	GGAGCCAAACCAAAAATTATTTGACT	59.290	34.615	12.02	0.00	34.62	3.41
1300	1324	6.423604	AGCCAAACCAAAAATTATTTGACTCG	59.576	34.615	12.02	0.00	34.62	4.18
1301	1325	6.201997	GCCAAACCAAAAATTATTTGACTCGT	59.798	34.615	12.02	2.81	34.62	4.18
1302	1326	7.382759	GCCAAACCAAAAATTATTTGACTCGTA	59.617	33.333	12.02	0.00	34.62	3.43
1303	1327	9.250624	CCAAACCAAAAATTATTTGACTCGTAA	57.749	29.630	12.02	0.00	34.62	3.18
1349	1375	1.192428	AGGAGCGATCGTTAGGGTTT	58.808	50.000	17.81	0.00	0.00	3.27
1359	1385	5.066246	CGATCGTTAGGGTTTAGAAGTCTCT	59.934	44.000	7.03	0.00	35.52	3.10
1394	1420	8.537728	TTTCTTATACATCATGCATTTTCCCT	57.462	30.769	0.00	0.00	0.00	4.20
1447	2352	4.993705	AGTCATGTTCCCCACTTTCTTA	57.006	40.909	0.00	0.00	0.00	2.10
1471	2376	9.781633	TTAGATTAAACTAAGTACTTGTTGGCA	57.218	29.630	18.56	8.30	0.00	4.92
1473	2378	9.297037	AGATTAAACTAAGTACTTGTTGGCAAT	57.703	29.630	18.56	16.55	33.65	3.56
1478	2383	8.630054	AACTAAGTACTTGTTGGCAATAATCA	57.370	30.769	18.56	0.00	33.65	2.57
1487	2392	8.246180	ACTTGTTGGCAATAATCAAACAGATAG	58.754	33.333	9.92	0.00	32.83	2.08
1505	2410	6.925718	ACAGATAGATGTATGTTGATCGGTTG	59.074	38.462	0.00	0.00	0.00	3.77
1518	2423	3.438781	TGATCGGTTGTTCAAATGTAGCC	59.561	43.478	0.00	0.00	0.00	3.93
1571	2476	2.042686	AGTTCTGCACAGCTTGACAA	57.957	45.000	0.00	0.00	0.00	3.18
1665	2570	1.040646	ATCTGGACGATGCATACGGT	58.959	50.000	18.34	9.62	34.93	4.83
1757	2663	5.869344	GCAACATATGTCGCTATTCCTATCA	59.131	40.000	11.60	0.00	0.00	2.15
1804	2710	2.916934	TGGGCCTAATACCAAACAGACT	59.083	45.455	4.53	0.00	32.89	3.24
1838	2744	8.311836	CAAACCTAACATCTAAGACTTGAGGTA	58.688	37.037	0.00	0.00	33.68	3.08
1843	2749	6.875972	ACATCTAAGACTTGAGGTACCAAT	57.124	37.500	15.94	0.00	0.00	3.16
2050	2960	1.035923	GTCCATCTCCGCTCATCAGA	58.964	55.000	0.00	0.00	0.00	3.27
2124	3034	1.480954	GATGAAACACCGCTCCTCCTA	59.519	52.381	0.00	0.00	0.00	2.94
2159	3069	1.021968	AGCACTTGGTCCAAAACGAC	58.978	50.000	5.64	0.00	0.00	4.34
2163	3073	2.438385	CTTGGTCCAAAACGACGCCG	62.438	60.000	5.64	0.00	42.50	6.46
2202	3113	1.200484	TCGAAACGTCATCATCGTCCA	59.800	47.619	0.00	0.00	40.69	4.02
2223	3134	3.895656	CAATCCGGTAGACCCAGATCTAA	59.104	47.826	0.00	0.00	32.97	2.10

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
13	14	1.978617	CATGGTGAGGGGTGGCAAC	60.979	63.158	0.00	0.00	0.00	4.17
91	92	0.957362	GGCTTCTAGCATGGATTGGC	59.043	55.000	0.00	0.00	44.75	4.52
104	105	0.321653	CGTGCAAACCCTAGGCTTCT	60.322	55.000	2.05	0.00	0.00	2.85
301	302	0.179161	CTCATCGACGGCTTCTTCGT	60.179	55.000	0.00	0.00	44.03	3.85
454	466	2.042435	CGCCTTCCTCCTCCTCCT	60.042	66.667	0.00	0.00	0.00	3.69
493	505	3.213402	CGCTCGTCCTCCTCCTCC	61.213	72.222	0.00	0.00	0.00	4.30
494	506	3.213402	CCGCTCGTCCTCCTCCTC	61.213	72.222	0.00	0.00	0.00	3.71
730	746	2.255172	CGTTTTGTGCCACCGCCTA	61.255	57.895	0.00	0.00	0.00	3.93
743	759	6.349860	GCTGAAATGAATAGTTACCCCGTTTT	60.350	38.462	0.00	0.00	0.00	2.43
810	828	0.251916	ATTCAGGCCGTCGGATTGAA	59.748	50.000	24.14	24.14	33.52	2.69
813	831	0.463833	GGAATTCAGGCCGTCGGATT	60.464	55.000	17.49	5.03	0.00	3.01
853	871	3.768922	GCTCAGGCACTCTCGGCT	61.769	66.667	0.00	0.00	43.72	5.52
915	933	1.604604	TGACAAAGCCCACAAGCTAC	58.395	50.000	0.00	0.00	44.11	3.58
925	943	6.319141	ACTAACTTTCTGATTGACAAAGCC	57.681	37.500	0.00	0.00	0.00	4.35
930	948	6.183361	TGGTGGTACTAACTTTCTGATTGACA	60.183	38.462	0.00	0.00	0.00	3.58
933	951	5.995282	TGTGGTGGTACTAACTTTCTGATTG	59.005	40.000	0.00	0.00	0.00	2.67
947	965	1.816835	TGACGAGAGATGTGGTGGTAC	59.183	52.381	0.00	0.00	0.00	3.34
948	966	2.209690	TGACGAGAGATGTGGTGGTA	57.790	50.000	0.00	0.00	0.00	3.25
949	967	1.205655	CATGACGAGAGATGTGGTGGT	59.794	52.381	0.00	0.00	0.00	4.16
950	968	1.205655	ACATGACGAGAGATGTGGTGG	59.794	52.381	0.00	0.00	31.47	4.61
951	969	2.534298	GACATGACGAGAGATGTGGTG	58.466	52.381	0.00	0.00	32.85	4.17
954	972	2.832672	TCGACATGACGAGAGATGTG	57.167	50.000	16.10	0.00	37.37	3.21
955	973	3.010420	TCTTCGACATGACGAGAGATGT	58.990	45.455	18.87	0.00	43.04	3.06
956	974	3.682372	TCTTCGACATGACGAGAGATG	57.318	47.619	18.87	9.40	43.04	2.90
957	975	3.549827	GCATCTTCGACATGACGAGAGAT	60.550	47.826	24.20	24.20	43.04	2.75
958	976	2.223363	GCATCTTCGACATGACGAGAGA	60.223	50.000	22.77	22.77	43.04	3.10
959	977	2.115595	GCATCTTCGACATGACGAGAG	58.884	52.381	18.87	17.66	43.04	3.20
960	978	1.745653	AGCATCTTCGACATGACGAGA	59.254	47.619	18.87	17.55	43.04	4.04
991	1014	2.390225	ACCAAAACCATGGCCACTAA	57.610	45.000	8.16	0.00	44.75	2.24
993	1016	1.047801	GAACCAAAACCATGGCCACT	58.952	50.000	8.16	0.00	44.75	4.00
1024	1047	3.147595	CCGGGTCCATGAGCTCGA	61.148	66.667	9.64	0.00	0.00	4.04
1026	1049	4.554036	GCCCGGGTCCATGAGCTC	62.554	72.222	24.63	6.82	0.00	4.09
1049	1072	0.865769	GGCGTATAACAATGGCCTCG	59.134	55.000	3.32	0.00	40.59	4.63
1077	1100	3.316573	GACGGAACAGCCAGGGGAG	62.317	68.421	0.00	0.00	35.94	4.30
1087	1110	1.284408	GCAAAATGCGGACGGAACA	59.716	52.632	0.00	0.00	31.71	3.18
1141	1164	0.805614	TTCTCCTCGAGCGACAGAAG	59.194	55.000	6.99	0.00	0.00	2.85
1157	1180	2.294078	CCTGGCCCCGTCTTCTTCT	61.294	63.158	0.00	0.00	0.00	2.85
1180	1204	2.137528	TGCTTCTGGGTCCACACGA	61.138	57.895	0.00	0.00	0.00	4.35
1192	1216	4.650972	TGTTAGGGTTATTGGTGCTTCT	57.349	40.909	0.00	0.00	0.00	2.85
1202	1226	4.877773	TGGGCAATGATTGTTAGGGTTAT	58.122	39.130	7.05	0.00	0.00	1.89
1208	1232	6.938596	TCATCTCTATGGGCAATGATTGTTAG	59.061	38.462	7.05	4.20	33.61	2.34
1212	1236	6.644248	TTTCATCTCTATGGGCAATGATTG	57.356	37.500	0.00	0.00	33.61	2.67
1269	1293	8.667463	CAAATAATTTTTGGTTTGGCTCCATAG	58.333	33.333	0.00	0.00	34.75	2.23
1270	1294	8.378565	TCAAATAATTTTTGGTTTGGCTCCATA	58.621	29.630	10.94	0.00	34.75	2.74
1277	1301	7.707774	ACGAGTCAAATAATTTTTGGTTTGG	57.292	32.000	10.94	4.56	33.55	3.28
1313	1339	7.298507	TCGCTCCTTTATGTTACAATGTTAC	57.701	36.000	0.00	0.00	0.00	2.50
1326	1352	2.963782	ACCCTAACGATCGCTCCTTTAT	59.036	45.455	16.60	0.00	0.00	1.40
1349	1375	8.964476	AAGAAATCAACAAACAGAGACTTCTA	57.036	30.769	0.00	0.00	30.73	2.10
1359	1385	9.571810	GCATGATGTATAAGAAATCAACAAACA	57.428	29.630	0.00	0.00	34.21	2.83
1424	2329	5.520748	AAGAAAGTGGGGAACATGACTAT	57.479	39.130	0.00	0.00	0.00	2.12
1447	2352	8.685838	TTGCCAACAAGTACTTAGTTTAATCT	57.314	30.769	8.04	0.00	0.00	2.40
1465	2370	8.408601	ACATCTATCTGTTTGATTATTGCCAAC	58.591	33.333	0.00	0.00	36.65	3.77
1466	2371	8.523915	ACATCTATCTGTTTGATTATTGCCAA	57.476	30.769	0.00	0.00	36.65	4.52
1475	2380	9.201127	CGATCAACATACATCTATCTGTTTGAT	57.799	33.333	0.00	0.00	37.06	2.57
1476	2381	7.653311	CCGATCAACATACATCTATCTGTTTGA	59.347	37.037	0.00	0.00	33.79	2.69
1477	2382	7.439356	ACCGATCAACATACATCTATCTGTTTG	59.561	37.037	0.00	0.00	35.16	2.93
1478	2383	7.500992	ACCGATCAACATACATCTATCTGTTT	58.499	34.615	0.00	0.00	29.74	2.83
1487	2392	5.794687	TGAACAACCGATCAACATACATC	57.205	39.130	0.00	0.00	0.00	3.06
1548	2453	1.942657	TCAAGCTGTGCAGAACTTGTC	59.057	47.619	22.03	0.00	40.29	3.18
1757	2663	0.962356	CAGCGCCCCTTCATCAACTT	60.962	55.000	2.29	0.00	0.00	2.66
1804	2710	4.546829	AGATGTTAGGTTTGGCTACGAA	57.453	40.909	0.00	0.00	0.00	3.85
2008	2918	4.007644	CAGGAGGGTGACGCTGCA	62.008	66.667	21.92	0.00	37.24	4.41
2028	2938	1.035923	GATGAGCGGAGATGGACTCA	58.964	55.000	0.00	0.00	46.54	3.41
2050	2960	4.057428	GCAGTGGAGACTCGGCGT	62.057	66.667	6.85	0.00	35.49	5.68
2124	3034	2.988839	GCTGGCTGGAGGGGACAAT	61.989	63.158	0.00	0.00	0.00	2.71
2163	3073	1.617947	ATGTCGTTCTCCCTCCTGGC	61.618	60.000	0.00	0.00	0.00	4.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.