Multiple sequence alignment - TraesCS6A01G312500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G312500 chr6A 100.000 8144 0 0 1 8144 549236293 549228150 0.000000e+00 15040.0
1 TraesCS6A01G312500 chr6A 97.183 71 1 1 5785 5855 253604953 253605022 1.440000e-22 119.0
2 TraesCS6A01G312500 chr6A 95.775 71 1 2 5786 5855 312469962 312469893 6.680000e-21 113.0
3 TraesCS6A01G312500 chr6A 91.892 74 4 2 5782 5854 249160190 249160262 1.450000e-17 102.0
4 TraesCS6A01G312500 chr6D 93.696 5917 190 57 1 5787 402497938 402492075 0.000000e+00 8691.0
5 TraesCS6A01G312500 chr6D 97.452 785 19 1 5953 6737 402492076 402491293 0.000000e+00 1338.0
6 TraesCS6A01G312500 chr6D 88.855 996 57 20 6791 7756 402491285 402490314 0.000000e+00 1175.0
7 TraesCS6A01G312500 chr6D 89.199 287 14 10 7866 8143 402490178 402489900 7.830000e-90 342.0
8 TraesCS6A01G312500 chr6D 95.506 89 4 0 5848 5936 452939012 452939100 8.520000e-30 143.0
9 TraesCS6A01G312500 chr6D 100.000 68 0 0 5785 5852 160314871 160314804 8.580000e-25 126.0
10 TraesCS6A01G312500 chr6D 100.000 68 0 0 5785 5852 411828803 411828870 8.580000e-25 126.0
11 TraesCS6A01G312500 chr6B 92.672 5895 206 85 1 5787 603363209 603357433 0.000000e+00 8285.0
12 TraesCS6A01G312500 chr6B 93.682 1931 96 12 5953 7870 603357434 603355517 0.000000e+00 2867.0
13 TraesCS6A01G312500 chr6B 91.266 229 8 3 7923 8143 603355386 603355162 1.330000e-77 302.0
14 TraesCS6A01G312500 chr5B 90.226 133 9 4 5825 5955 69131996 69131866 3.910000e-38 171.0
15 TraesCS6A01G312500 chr5B 93.258 89 6 0 5848 5936 419761843 419761931 1.840000e-26 132.0
16 TraesCS6A01G312500 chr5B 92.593 81 4 2 5785 5864 636601227 636601148 1.860000e-21 115.0
17 TraesCS6A01G312500 chr5B 97.297 37 0 1 5923 5959 636601047 636601012 2.450000e-05 62.1
18 TraesCS6A01G312500 chr5B 96.970 33 1 0 5926 5958 123919370 123919338 1.000000e-03 56.5
19 TraesCS6A01G312500 chr2D 86.923 130 13 4 5827 5954 591362898 591362771 8.520000e-30 143.0
20 TraesCS6A01G312500 chr2D 94.318 88 5 0 5850 5937 178776540 178776453 1.430000e-27 135.0
21 TraesCS6A01G312500 chr2D 93.827 81 4 1 5772 5852 194269756 194269677 3.990000e-23 121.0
22 TraesCS6A01G312500 chr7A 92.708 96 7 0 5851 5946 616935541 616935446 1.100000e-28 139.0
23 TraesCS6A01G312500 chr7A 91.304 46 4 0 5916 5961 515174614 515174569 6.820000e-06 63.9
24 TraesCS6A01G312500 chr1A 86.260 131 13 2 5825 5955 490108658 490108533 3.960000e-28 137.0
25 TraesCS6A01G312500 chr7B 90.816 98 8 1 5851 5948 592623877 592623973 6.630000e-26 130.0
26 TraesCS6A01G312500 chr5D 100.000 68 0 0 5785 5852 54613403 54613336 8.580000e-25 126.0
27 TraesCS6A01G312500 chr5D 100.000 68 0 0 5785 5852 254684660 254684727 8.580000e-25 126.0
28 TraesCS6A01G312500 chr5D 78.363 171 33 4 5786 5954 549792199 549792031 3.110000e-19 108.0
29 TraesCS6A01G312500 chr4D 100.000 68 0 0 5785 5852 50484851 50484918 8.580000e-25 126.0
30 TraesCS6A01G312500 chr4D 100.000 68 0 0 5785 5852 278810211 278810144 8.580000e-25 126.0
31 TraesCS6A01G312500 chr1D 100.000 68 0 0 5785 5852 268076131 268076064 8.580000e-25 126.0
32 TraesCS6A01G312500 chr1D 94.286 70 2 2 5786 5854 402455687 402455619 1.120000e-18 106.0
33 TraesCS6A01G312500 chr7D 89.109 101 9 2 5838 5938 85838718 85838620 3.090000e-24 124.0
34 TraesCS6A01G312500 chr2B 90.805 87 6 2 5786 5871 697996954 697996869 1.860000e-21 115.0
35 TraesCS6A01G312500 chr4A 94.521 73 2 2 5783 5854 674757047 674757118 2.400000e-20 111.0
36 TraesCS6A01G312500 chr2A 94.444 72 3 1 5785 5855 315994185 315994114 8.640000e-20 110.0
37 TraesCS6A01G312500 chr3B 90.541 74 5 2 5785 5857 652966389 652966461 6.730000e-16 97.1
38 TraesCS6A01G312500 chr3B 97.297 37 0 1 5923 5959 564241492 564241457 2.450000e-05 62.1
39 TraesCS6A01G312500 chr3A 100.000 28 0 0 5934 5961 110785892 110785865 1.500000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G312500 chr6A 549228150 549236293 8143 True 15040.0 15040 100.0000 1 8144 1 chr6A.!!$R2 8143
1 TraesCS6A01G312500 chr6D 402489900 402497938 8038 True 2886.5 8691 92.3005 1 8143 4 chr6D.!!$R2 8142
2 TraesCS6A01G312500 chr6B 603355162 603363209 8047 True 3818.0 8285 92.5400 1 8143 3 chr6B.!!$R1 8142

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
572 650 0.952010 TCCCGCACGGAAAAAGCTAC 60.952 55.000 11.42 0.0 37.88 3.58 F
2200 2337 0.474184 ACTGCTGGTGTGCTTTACCT 59.526 50.000 0.00 0.0 39.01 3.08 F
2272 2409 0.179111 GGACATCATTCGAGCGTCCA 60.179 55.000 12.94 0.0 42.96 4.02 F
3122 3260 1.484240 GACAGCTATCTTGGTGGAGCT 59.516 52.381 0.00 0.0 46.08 4.09 F
3998 4137 0.738975 TGACGGACGATGTGATCTCC 59.261 55.000 0.00 0.0 0.00 3.71 F
5867 6029 1.081481 TCTACTCCCTCTGTCCCACA 58.919 55.000 0.00 0.0 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2272 2409 0.409484 AAGCCACCCCATTTAGCAGT 59.591 50.000 0.00 0.0 0.00 4.40 R
3759 3898 0.984230 TGGCCAAGTCCTAAGAGTGG 59.016 55.000 0.61 0.0 33.27 4.00 R
3851 3990 1.002430 TGAGCGGTCTGAGCAAAATCT 59.998 47.619 16.64 0.0 37.01 2.40 R
4473 4628 0.673437 AGACCCGCACAAAAACATGG 59.327 50.000 0.00 0.0 0.00 3.66 R
5937 6099 0.252103 AGCTACTCCCTCCGTTCCAA 60.252 55.000 0.00 0.0 0.00 3.53 R
7664 7867 0.738389 AAAGACACACGCCCAGTTTG 59.262 50.000 0.00 0.0 36.63 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 3.142838 GGTCGCTGGCATTGGCAT 61.143 61.111 13.83 0.00 43.71 4.40
110 111 1.403687 CCTACTGGCTGGCTCTACCC 61.404 65.000 2.00 0.00 37.83 3.69
112 113 1.886730 TACTGGCTGGCTCTACCCCT 61.887 60.000 2.00 0.00 37.83 4.79
113 114 2.688666 TGGCTGGCTCTACCCCTG 60.689 66.667 2.00 0.00 37.83 4.45
114 115 4.182433 GGCTGGCTCTACCCCTGC 62.182 72.222 0.00 0.00 43.94 4.85
115 116 3.086600 GCTGGCTCTACCCCTGCT 61.087 66.667 0.00 0.00 42.13 4.24
116 117 1.762460 GCTGGCTCTACCCCTGCTA 60.762 63.158 0.00 0.00 42.13 3.49
159 169 2.736826 CCCGGCTTCTTCCTCTCCC 61.737 68.421 0.00 0.00 0.00 4.30
160 170 2.736826 CCGGCTTCTTCCTCTCCCC 61.737 68.421 0.00 0.00 0.00 4.81
161 171 2.736826 CGGCTTCTTCCTCTCCCCC 61.737 68.421 0.00 0.00 0.00 5.40
162 172 1.307430 GGCTTCTTCCTCTCCCCCT 60.307 63.158 0.00 0.00 0.00 4.79
236 246 2.181777 GTCGCTGTCGCAGGATCA 59.818 61.111 8.57 0.00 35.30 2.92
239 269 2.265739 GCTGTCGCAGGATCACCA 59.734 61.111 8.57 0.00 38.94 4.17
275 314 1.624479 CCAGGCTCCAGCAGATCAGT 61.624 60.000 0.03 0.00 44.36 3.41
362 430 2.361104 CACCATTCCACCCACCCG 60.361 66.667 0.00 0.00 0.00 5.28
377 445 3.381983 CCGCCAAAAAGAGCCCCC 61.382 66.667 0.00 0.00 0.00 5.40
552 630 1.605753 GGGCCTTTGTCCGGAATATC 58.394 55.000 5.23 0.00 0.00 1.63
572 650 0.952010 TCCCGCACGGAAAAAGCTAC 60.952 55.000 11.42 0.00 37.88 3.58
575 653 1.392510 CCGCACGGAAAAAGCTACTAC 59.607 52.381 2.01 0.00 37.50 2.73
578 656 3.302699 CGCACGGAAAAAGCTACTACTAC 59.697 47.826 0.00 0.00 0.00 2.73
579 657 4.492611 GCACGGAAAAAGCTACTACTACT 58.507 43.478 0.00 0.00 0.00 2.57
580 658 5.644644 GCACGGAAAAAGCTACTACTACTA 58.355 41.667 0.00 0.00 0.00 1.82
581 659 5.742926 GCACGGAAAAAGCTACTACTACTAG 59.257 44.000 0.00 0.00 0.00 2.57
582 660 6.404074 GCACGGAAAAAGCTACTACTACTAGA 60.404 42.308 0.00 0.00 0.00 2.43
583 661 7.188157 CACGGAAAAAGCTACTACTACTAGAG 58.812 42.308 0.00 0.00 0.00 2.43
584 662 6.183360 ACGGAAAAAGCTACTACTACTAGAGC 60.183 42.308 0.00 0.00 0.00 4.09
585 663 6.038492 CGGAAAAAGCTACTACTACTAGAGCT 59.962 42.308 0.00 0.00 45.23 4.09
589 667 4.813027 AGCTACTACTACTAGAGCTAGCG 58.187 47.826 9.55 0.00 41.60 4.26
621 699 1.001393 GGTGCGATTCCTCCCCAAA 60.001 57.895 0.00 0.00 0.00 3.28
703 781 3.436028 CGGAGGTAGGGGAGGGGA 61.436 72.222 0.00 0.00 0.00 4.81
704 782 2.615773 GGAGGTAGGGGAGGGGAG 59.384 72.222 0.00 0.00 0.00 4.30
705 783 2.615773 GAGGTAGGGGAGGGGAGG 59.384 72.222 0.00 0.00 0.00 4.30
896 986 2.600731 CGCTCTCTCTCCCTCCCT 59.399 66.667 0.00 0.00 0.00 4.20
897 987 1.827789 CGCTCTCTCTCCCTCCCTG 60.828 68.421 0.00 0.00 0.00 4.45
898 988 2.133641 GCTCTCTCTCCCTCCCTGC 61.134 68.421 0.00 0.00 0.00 4.85
899 989 1.457455 CTCTCTCTCCCTCCCTGCC 60.457 68.421 0.00 0.00 0.00 4.85
1396 1519 6.410931 CGATGCATTCGTTAATTCATTCAC 57.589 37.500 0.00 0.00 43.01 3.18
1399 1522 6.493449 TGCATTCGTTAATTCATTCACTCA 57.507 33.333 0.00 0.00 0.00 3.41
1408 1531 8.400947 CGTTAATTCATTCACTCATTCATTCCT 58.599 33.333 0.00 0.00 0.00 3.36
1414 1537 7.567458 TCATTCACTCATTCATTCCTATGTCA 58.433 34.615 0.00 0.00 33.34 3.58
1505 1632 2.297701 ACACGGTTGTTGCATCTCTTT 58.702 42.857 0.00 0.00 28.43 2.52
1568 1695 1.753468 GCAGGCTAGTCGTTTAGCGC 61.753 60.000 0.00 0.00 45.53 5.92
1570 1697 2.228914 GGCTAGTCGTTTAGCGCCG 61.229 63.158 2.29 0.00 45.53 6.46
1624 1752 5.277683 CCTCTTGATCTTTGAATATGTGGCG 60.278 44.000 0.00 0.00 0.00 5.69
1764 1892 1.638529 TAATGGTTGGGTTTGGCCAG 58.361 50.000 5.11 0.00 39.65 4.85
1774 1902 1.832167 TTTGGCCAGTGCTTGACCC 60.832 57.895 5.11 0.00 37.74 4.46
1805 1933 0.527600 TTATGCTCACAGCCGTAGCG 60.528 55.000 0.00 0.00 46.67 4.26
1883 2011 6.370453 TCCTAAAATATTCCCCTAAAGGTGC 58.630 40.000 0.00 0.00 0.00 5.01
1950 2078 6.590677 GTGGTAGCTTTAGACTTTTAGGAGTG 59.409 42.308 0.00 0.00 0.00 3.51
2077 2205 7.538303 TTTTCTTCTTCTTTCAAACAATGCC 57.462 32.000 0.00 0.00 0.00 4.40
2078 2206 5.200368 TCTTCTTCTTTCAAACAATGCCC 57.800 39.130 0.00 0.00 0.00 5.36
2079 2207 4.895297 TCTTCTTCTTTCAAACAATGCCCT 59.105 37.500 0.00 0.00 0.00 5.19
2081 2209 5.612725 TCTTCTTTCAAACAATGCCCTTT 57.387 34.783 0.00 0.00 0.00 3.11
2082 2210 5.988287 TCTTCTTTCAAACAATGCCCTTTT 58.012 33.333 0.00 0.00 0.00 2.27
2083 2211 6.413892 TCTTCTTTCAAACAATGCCCTTTTT 58.586 32.000 0.00 0.00 0.00 1.94
2116 2252 2.042686 TCACATGGATTAGGTGCAGC 57.957 50.000 8.11 8.11 40.74 5.25
2119 2255 2.756760 CACATGGATTAGGTGCAGCTTT 59.243 45.455 25.47 12.30 33.96 3.51
2128 2264 6.127619 GGATTAGGTGCAGCTTTAACTTGATT 60.128 38.462 25.47 0.00 0.00 2.57
2129 2265 4.510038 AGGTGCAGCTTTAACTTGATTG 57.490 40.909 13.85 0.00 0.00 2.67
2157 2293 4.640771 ACTTTCTTGGATGCTCTTGGTA 57.359 40.909 0.00 0.00 0.00 3.25
2161 2297 7.175104 ACTTTCTTGGATGCTCTTGGTAATTA 58.825 34.615 0.00 0.00 0.00 1.40
2167 2303 6.349300 TGGATGCTCTTGGTAATTAAGTCTC 58.651 40.000 0.00 0.00 0.00 3.36
2170 2306 7.201652 GGATGCTCTTGGTAATTAAGTCTCAAC 60.202 40.741 0.00 0.00 0.00 3.18
2171 2307 5.938125 TGCTCTTGGTAATTAAGTCTCAACC 59.062 40.000 0.00 0.00 0.00 3.77
2173 2309 6.442541 TCTTGGTAATTAAGTCTCAACCCA 57.557 37.500 0.00 0.00 0.00 4.51
2174 2310 7.027874 TCTTGGTAATTAAGTCTCAACCCAT 57.972 36.000 0.00 0.00 0.00 4.00
2175 2311 7.110155 TCTTGGTAATTAAGTCTCAACCCATC 58.890 38.462 0.00 0.00 0.00 3.51
2176 2312 6.381498 TGGTAATTAAGTCTCAACCCATCA 57.619 37.500 0.00 0.00 0.00 3.07
2177 2313 6.414732 TGGTAATTAAGTCTCAACCCATCAG 58.585 40.000 0.00 0.00 0.00 2.90
2181 2318 5.560722 TTAAGTCTCAACCCATCAGTTCA 57.439 39.130 0.00 0.00 0.00 3.18
2200 2337 0.474184 ACTGCTGGTGTGCTTTACCT 59.526 50.000 0.00 0.00 39.01 3.08
2210 2347 5.221342 TGGTGTGCTTTACCTTACATTTTGG 60.221 40.000 0.00 0.00 39.01 3.28
2216 2353 7.492994 GTGCTTTACCTTACATTTTGGTGAAAA 59.507 33.333 0.00 0.00 35.52 2.29
2272 2409 0.179111 GGACATCATTCGAGCGTCCA 60.179 55.000 12.94 0.00 42.96 4.02
2314 2451 2.125350 CAGCGCCTCTTCCCTCAC 60.125 66.667 2.29 0.00 0.00 3.51
2395 2532 3.378512 TGCACCTCTCCAAGATGAGTAT 58.621 45.455 0.00 0.00 33.93 2.12
2531 2668 1.852157 ATTGAGGGCAGGGGACACA 60.852 57.895 0.00 0.00 0.00 3.72
2680 2817 2.671963 GGGTCGAACCACTTGGGC 60.672 66.667 16.61 0.00 41.02 5.36
2798 2936 7.824779 GGACTATCTTCCAAATATATGACCCAC 59.175 40.741 0.00 0.00 35.49 4.61
2842 2980 8.391106 GTCATTTCTTTAGTGTTGGCTATACAG 58.609 37.037 0.00 0.00 0.00 2.74
2851 2989 6.947464 AGTGTTGGCTATACAGTACTTCAAT 58.053 36.000 0.00 0.00 0.00 2.57
2975 3113 8.084073 TCTTTCTTTCATTCAGCAATACAAAGG 58.916 33.333 0.00 0.00 29.46 3.11
3032 3170 9.787435 AGAGTTTTGTACCAGAAATATAACACA 57.213 29.630 0.00 0.00 0.00 3.72
3122 3260 1.484240 GACAGCTATCTTGGTGGAGCT 59.516 52.381 0.00 0.00 46.08 4.09
3200 3338 8.939929 CAGGATATATTGGTGAATGTGTATGAC 58.060 37.037 0.00 0.00 0.00 3.06
3218 3356 2.802247 TGACGTCACAAATGCTTCAGAG 59.198 45.455 15.76 0.00 0.00 3.35
3320 3458 4.201950 CCGTTTAGGAAGCATGAAATGAGG 60.202 45.833 0.00 0.00 46.13 3.86
3417 3556 1.689258 GGTATGGGCAAAAGCCTCCAT 60.689 52.381 6.45 5.15 42.12 3.41
3618 3757 3.762407 TTGTGTGCTTAGGCTACTTGA 57.238 42.857 0.00 0.00 39.59 3.02
3620 3759 1.993370 GTGTGCTTAGGCTACTTGACG 59.007 52.381 0.00 0.00 39.59 4.35
3641 3780 7.537715 TGACGTTCTTCCGTACATAAGAATTA 58.462 34.615 17.78 6.92 42.11 1.40
3742 3881 7.171678 GTCCTTGGTATGAATATCTTCCTTTCG 59.828 40.741 0.00 0.00 0.00 3.46
3744 3883 6.740944 TGGTATGAATATCTTCCTTTCGGA 57.259 37.500 0.00 0.00 37.60 4.55
3759 3898 8.827177 TTCCTTTCGGATACATACATAATGTC 57.173 34.615 0.00 0.00 41.17 3.06
3766 3905 7.232737 TCGGATACATACATAATGTCCACTCTT 59.767 37.037 0.00 0.00 46.15 2.85
3806 3945 9.471084 CTTAAAACATTACCTTTTGTTGTAGGG 57.529 33.333 0.00 0.00 36.26 3.53
3851 3990 6.096141 GGACAGATCTGACTATGACTCAGAAA 59.904 42.308 29.27 0.00 45.67 2.52
3887 4026 1.250328 CTCAGGATTGTGGCAAAGCA 58.750 50.000 0.00 0.00 0.00 3.91
3998 4137 0.738975 TGACGGACGATGTGATCTCC 59.261 55.000 0.00 0.00 0.00 3.71
4097 4240 6.564709 TGCTTTCATAGTCATAATGGATGC 57.435 37.500 0.00 0.00 34.90 3.91
4131 4274 2.855728 GATTGTTTGCAGCCGAGCGG 62.856 60.000 4.20 4.20 37.31 5.52
4246 4389 1.867233 GCAGTGTTTGTGAGTGACGAT 59.133 47.619 0.00 0.00 0.00 3.73
4329 4472 3.367703 GGCAATGCAGTCAAAGTAAGCAT 60.368 43.478 7.79 0.00 46.86 3.79
4353 4496 8.773645 CATTCAACTTTCGGTATCATAGCATTA 58.226 33.333 0.00 0.00 0.00 1.90
4393 4536 8.356533 ACTTTGCAACTTTGAATAATGTTGAG 57.643 30.769 17.53 11.03 46.61 3.02
4394 4537 7.981225 ACTTTGCAACTTTGAATAATGTTGAGT 59.019 29.630 17.53 11.47 46.61 3.41
4473 4628 1.966451 CCAGTTCACAGAACGGGGC 60.966 63.158 17.64 0.00 32.86 5.80
4495 4650 1.305201 TGTTTTTGTGCGGGTCTCTC 58.695 50.000 0.00 0.00 0.00 3.20
4524 4679 7.004555 TGAGAACTCAACTATGGAAGCTAAA 57.995 36.000 1.79 0.00 36.53 1.85
4979 5134 4.096833 TGCATCCAAAGATACTTCATGTGC 59.903 41.667 0.00 0.00 0.00 4.57
5157 5312 3.044894 TCAAGCCTTTGGGAAAAATGGT 58.955 40.909 0.00 0.00 34.97 3.55
5250 5405 6.049790 AGAAATAGAGGACAAATAACCGCTC 58.950 40.000 0.00 0.00 37.48 5.03
5255 5410 3.074412 AGGACAAATAACCGCTCAACTG 58.926 45.455 0.00 0.00 0.00 3.16
5454 5616 6.398918 TCACTAATACAAGAGGAGCTTTCAC 58.601 40.000 0.00 0.00 33.60 3.18
5520 5682 9.509956 AGTAGATAGGTAGATGTAGTGAATCAC 57.490 37.037 5.02 5.02 34.10 3.06
5587 5749 3.141398 TCTGTGAGCCAAATTCAGACAC 58.859 45.455 0.00 0.00 31.51 3.67
5613 5775 6.092807 ACAGAGATAAAGCACTCGGAATTTTC 59.907 38.462 0.00 0.00 38.08 2.29
5614 5776 6.314896 CAGAGATAAAGCACTCGGAATTTTCT 59.685 38.462 0.00 0.00 38.08 2.52
5615 5777 6.536941 AGAGATAAAGCACTCGGAATTTTCTC 59.463 38.462 0.00 0.00 38.08 2.87
5616 5778 6.410540 AGATAAAGCACTCGGAATTTTCTCT 58.589 36.000 0.00 0.00 0.00 3.10
5617 5779 4.756084 AAAGCACTCGGAATTTTCTCTG 57.244 40.909 0.00 0.00 0.00 3.35
5618 5780 3.409026 AGCACTCGGAATTTTCTCTGT 57.591 42.857 0.00 0.00 0.00 3.41
5619 5781 3.070018 AGCACTCGGAATTTTCTCTGTG 58.930 45.455 0.00 0.00 0.00 3.66
5620 5782 3.067106 GCACTCGGAATTTTCTCTGTGA 58.933 45.455 0.00 0.00 0.00 3.58
5621 5783 3.124297 GCACTCGGAATTTTCTCTGTGAG 59.876 47.826 0.00 0.00 0.00 3.51
5622 5784 4.310769 CACTCGGAATTTTCTCTGTGAGT 58.689 43.478 0.00 0.00 35.96 3.41
5623 5785 4.387256 CACTCGGAATTTTCTCTGTGAGTC 59.613 45.833 0.00 0.00 33.48 3.36
5624 5786 4.039245 ACTCGGAATTTTCTCTGTGAGTCA 59.961 41.667 0.00 0.00 30.06 3.41
5625 5787 4.956085 TCGGAATTTTCTCTGTGAGTCAA 58.044 39.130 0.00 0.00 0.00 3.18
5785 5947 4.254492 GTTTCGGGCTCAGTTTAGATTCT 58.746 43.478 0.00 0.00 0.00 2.40
5786 5948 5.046878 TGTTTCGGGCTCAGTTTAGATTCTA 60.047 40.000 0.00 0.00 0.00 2.10
5787 5949 4.650754 TCGGGCTCAGTTTAGATTCTAC 57.349 45.455 0.00 0.00 0.00 2.59
5788 5950 4.279145 TCGGGCTCAGTTTAGATTCTACT 58.721 43.478 0.00 0.00 0.00 2.57
5789 5951 4.338682 TCGGGCTCAGTTTAGATTCTACTC 59.661 45.833 0.00 0.00 0.00 2.59
5790 5952 4.500035 CGGGCTCAGTTTAGATTCTACTCC 60.500 50.000 0.00 0.00 0.00 3.85
5791 5953 4.202274 GGGCTCAGTTTAGATTCTACTCCC 60.202 50.000 0.00 0.00 0.00 4.30
5792 5954 4.651962 GGCTCAGTTTAGATTCTACTCCCT 59.348 45.833 0.00 0.00 0.00 4.20
5793 5955 5.221362 GGCTCAGTTTAGATTCTACTCCCTC 60.221 48.000 0.00 0.00 0.00 4.30
5794 5956 5.221362 GCTCAGTTTAGATTCTACTCCCTCC 60.221 48.000 0.00 0.00 0.00 4.30
5795 5957 4.888239 TCAGTTTAGATTCTACTCCCTCCG 59.112 45.833 0.00 0.00 0.00 4.63
5796 5958 4.645588 CAGTTTAGATTCTACTCCCTCCGT 59.354 45.833 0.00 0.00 0.00 4.69
5797 5959 5.127356 CAGTTTAGATTCTACTCCCTCCGTT 59.873 44.000 0.00 0.00 0.00 4.44
5798 5960 5.360429 AGTTTAGATTCTACTCCCTCCGTTC 59.640 44.000 0.00 0.00 0.00 3.95
5799 5961 2.668625 AGATTCTACTCCCTCCGTTCC 58.331 52.381 0.00 0.00 0.00 3.62
5800 5962 2.024273 AGATTCTACTCCCTCCGTTCCA 60.024 50.000 0.00 0.00 0.00 3.53
5801 5963 2.314071 TTCTACTCCCTCCGTTCCAA 57.686 50.000 0.00 0.00 0.00 3.53
5802 5964 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
5803 5965 2.612000 TCTACTCCCTCCGTTCCAAAA 58.388 47.619 0.00 0.00 0.00 2.44
5804 5966 3.178865 TCTACTCCCTCCGTTCCAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
5805 5967 4.355549 TCTACTCCCTCCGTTCCAAAATA 58.644 43.478 0.00 0.00 0.00 1.40
5806 5968 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
5807 5969 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
5808 5970 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
5809 5971 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
5810 5972 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
5811 5973 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
5812 5974 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
5813 5975 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
5814 5976 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
5815 5977 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
5816 5978 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
5817 5979 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
5818 5980 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
5819 5981 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
5820 5982 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
5822 5984 9.793259 TTCCAAAATAGATGACTCAACTTTAGT 57.207 29.630 0.00 0.00 0.00 2.24
5852 6014 9.694137 AAGTTAGTACAAAGTTGAGTCATCTAC 57.306 33.333 4.14 0.00 0.00 2.59
5853 6015 9.080097 AGTTAGTACAAAGTTGAGTCATCTACT 57.920 33.333 4.14 6.82 42.32 2.57
5863 6025 3.306472 AGTCATCTACTCCCTCTGTCC 57.694 52.381 0.00 0.00 30.33 4.02
5864 6026 2.091555 AGTCATCTACTCCCTCTGTCCC 60.092 54.545 0.00 0.00 30.33 4.46
5865 6027 1.930204 TCATCTACTCCCTCTGTCCCA 59.070 52.381 0.00 0.00 0.00 4.37
5866 6028 2.035632 CATCTACTCCCTCTGTCCCAC 58.964 57.143 0.00 0.00 0.00 4.61
5867 6029 1.081481 TCTACTCCCTCTGTCCCACA 58.919 55.000 0.00 0.00 0.00 4.17
5868 6030 1.431633 TCTACTCCCTCTGTCCCACAA 59.568 52.381 0.00 0.00 0.00 3.33
5869 6031 2.044492 TCTACTCCCTCTGTCCCACAAT 59.956 50.000 0.00 0.00 0.00 2.71
5870 6032 2.642171 ACTCCCTCTGTCCCACAATA 57.358 50.000 0.00 0.00 0.00 1.90
5871 6033 3.136641 ACTCCCTCTGTCCCACAATAT 57.863 47.619 0.00 0.00 0.00 1.28
5872 6034 4.280789 ACTCCCTCTGTCCCACAATATA 57.719 45.455 0.00 0.00 0.00 0.86
5873 6035 4.631234 ACTCCCTCTGTCCCACAATATAA 58.369 43.478 0.00 0.00 0.00 0.98
5874 6036 4.656112 ACTCCCTCTGTCCCACAATATAAG 59.344 45.833 0.00 0.00 0.00 1.73
5875 6037 4.890988 TCCCTCTGTCCCACAATATAAGA 58.109 43.478 0.00 0.00 0.00 2.10
5876 6038 5.285401 TCCCTCTGTCCCACAATATAAGAA 58.715 41.667 0.00 0.00 0.00 2.52
5877 6039 5.130477 TCCCTCTGTCCCACAATATAAGAAC 59.870 44.000 0.00 0.00 0.00 3.01
5878 6040 5.050490 CCTCTGTCCCACAATATAAGAACG 58.950 45.833 0.00 0.00 0.00 3.95
5879 6041 5.395324 CCTCTGTCCCACAATATAAGAACGT 60.395 44.000 0.00 0.00 0.00 3.99
5880 6042 6.045072 TCTGTCCCACAATATAAGAACGTT 57.955 37.500 0.00 0.00 0.00 3.99
5881 6043 6.469410 TCTGTCCCACAATATAAGAACGTTT 58.531 36.000 0.46 0.00 0.00 3.60
5882 6044 6.938030 TCTGTCCCACAATATAAGAACGTTTT 59.062 34.615 0.46 0.00 0.00 2.43
5883 6045 7.446013 TCTGTCCCACAATATAAGAACGTTTTT 59.554 33.333 9.22 9.22 0.00 1.94
5884 6046 7.364200 TGTCCCACAATATAAGAACGTTTTTG 58.636 34.615 13.87 8.38 0.00 2.44
5885 6047 7.228906 TGTCCCACAATATAAGAACGTTTTTGA 59.771 33.333 13.87 2.81 0.00 2.69
5886 6048 7.536281 GTCCCACAATATAAGAACGTTTTTGAC 59.464 37.037 13.87 5.89 0.00 3.18
5887 6049 7.228906 TCCCACAATATAAGAACGTTTTTGACA 59.771 33.333 13.87 0.01 0.00 3.58
5888 6050 7.325097 CCCACAATATAAGAACGTTTTTGACAC 59.675 37.037 13.87 0.00 0.00 3.67
5889 6051 8.073768 CCACAATATAAGAACGTTTTTGACACT 58.926 33.333 13.87 0.00 0.00 3.55
5897 6059 7.781548 AGAACGTTTTTGACACTACATTAGT 57.218 32.000 0.46 0.00 40.28 2.24
5929 6091 9.712305 AAATGTTCTTATATTATGAGACGGAGG 57.288 33.333 0.00 0.00 0.00 4.30
5930 6092 7.228314 TGTTCTTATATTATGAGACGGAGGG 57.772 40.000 0.00 0.00 0.00 4.30
5931 6093 7.008332 TGTTCTTATATTATGAGACGGAGGGA 58.992 38.462 0.00 0.00 0.00 4.20
5932 6094 7.176865 TGTTCTTATATTATGAGACGGAGGGAG 59.823 40.741 0.00 0.00 0.00 4.30
5933 6095 6.791371 TCTTATATTATGAGACGGAGGGAGT 58.209 40.000 0.00 0.00 0.00 3.85
5934 6096 7.925622 TCTTATATTATGAGACGGAGGGAGTA 58.074 38.462 0.00 0.00 0.00 2.59
5935 6097 8.558312 TCTTATATTATGAGACGGAGGGAGTAT 58.442 37.037 0.00 0.00 0.00 2.12
5936 6098 9.191479 CTTATATTATGAGACGGAGGGAGTATT 57.809 37.037 0.00 0.00 0.00 1.89
5937 6099 9.543231 TTATATTATGAGACGGAGGGAGTATTT 57.457 33.333 0.00 0.00 0.00 1.40
5938 6100 6.749036 ATTATGAGACGGAGGGAGTATTTT 57.251 37.500 0.00 0.00 0.00 1.82
5939 6101 3.887621 TGAGACGGAGGGAGTATTTTG 57.112 47.619 0.00 0.00 0.00 2.44
5940 6102 2.500098 TGAGACGGAGGGAGTATTTTGG 59.500 50.000 0.00 0.00 0.00 3.28
5941 6103 2.764572 GAGACGGAGGGAGTATTTTGGA 59.235 50.000 0.00 0.00 0.00 3.53
5942 6104 3.178865 AGACGGAGGGAGTATTTTGGAA 58.821 45.455 0.00 0.00 0.00 3.53
5943 6105 3.055312 AGACGGAGGGAGTATTTTGGAAC 60.055 47.826 0.00 0.00 0.00 3.62
5944 6106 2.277084 CGGAGGGAGTATTTTGGAACG 58.723 52.381 0.00 0.00 0.00 3.95
5945 6107 2.640184 GGAGGGAGTATTTTGGAACGG 58.360 52.381 0.00 0.00 0.00 4.44
5946 6108 2.237893 GGAGGGAGTATTTTGGAACGGA 59.762 50.000 0.00 0.00 0.00 4.69
5947 6109 3.532542 GAGGGAGTATTTTGGAACGGAG 58.467 50.000 0.00 0.00 0.00 4.63
5948 6110 2.238898 AGGGAGTATTTTGGAACGGAGG 59.761 50.000 0.00 0.00 0.00 4.30
5949 6111 2.640184 GGAGTATTTTGGAACGGAGGG 58.360 52.381 0.00 0.00 0.00 4.30
5950 6112 2.237893 GGAGTATTTTGGAACGGAGGGA 59.762 50.000 0.00 0.00 0.00 4.20
5951 6113 3.532542 GAGTATTTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
6052 6214 2.688364 GCAGGTGCTTGTCTAACAAC 57.312 50.000 0.00 0.00 33.96 3.32
6112 6274 5.367060 AGGACCAGAACTAATCCTCAATACC 59.633 44.000 0.00 0.00 36.89 2.73
6250 6415 0.755698 TGGAGGCCCGAGACAGATAC 60.756 60.000 0.00 0.00 34.29 2.24
6258 6423 3.243134 GCCCGAGACAGATACTCAGTTAC 60.243 52.174 0.00 0.00 34.47 2.50
6262 6427 4.025563 CGAGACAGATACTCAGTTACCGAG 60.026 50.000 0.00 0.00 34.47 4.63
6271 6436 1.995484 TCAGTTACCGAGTCGTCTACG 59.005 52.381 12.31 0.00 41.45 3.51
6279 6444 0.044330 GAGTCGTCTACGTACGCTCG 60.044 60.000 16.72 14.40 42.56 5.03
6353 6518 3.728845 TGAAGCTGACAAGGACAAGTAC 58.271 45.455 0.00 0.00 0.00 2.73
6482 6647 3.933861 AATAGGCCCTCATTTCTTCGT 57.066 42.857 0.00 0.00 0.00 3.85
6489 6654 1.936547 CCTCATTTCTTCGTAGCCTGC 59.063 52.381 0.00 0.00 0.00 4.85
6626 6791 3.491766 ATCTCCCTACTTCAACCTCCA 57.508 47.619 0.00 0.00 0.00 3.86
6781 6946 7.957992 TTGTTTGGGTTTTACTTAGGAAAGA 57.042 32.000 0.00 0.00 36.50 2.52
6891 7058 1.819903 GTACTCTTCAGGTTCGAGGCT 59.180 52.381 0.00 0.00 0.00 4.58
6942 7109 2.296471 AGCGAACGAGGAAAAGAGAGAA 59.704 45.455 0.00 0.00 0.00 2.87
7008 7175 0.877071 CTGTTCTTGCAATGACGGCT 59.123 50.000 0.00 0.00 0.00 5.52
7038 7205 0.608582 AGGCGACCTACGAAGAGTGT 60.609 55.000 0.00 0.00 45.77 3.55
7062 7229 1.673767 AATCGGGGATGGATGGCTAT 58.326 50.000 0.00 0.00 0.00 2.97
7126 7293 2.983192 TCCAGATTAGTGGTGGGAACAA 59.017 45.455 0.00 0.00 46.06 2.83
7152 7319 0.389556 CGGCCTCATGATCTGATCGG 60.390 60.000 12.65 8.69 32.10 4.18
7158 7325 3.563508 CTCATGATCTGATCGGTCGAAG 58.436 50.000 12.65 1.64 32.10 3.79
7224 7393 4.945246 TCTGACTCTTACAAACCTGACAC 58.055 43.478 0.00 0.00 0.00 3.67
7234 7403 3.118738 ACAAACCTGACACGGATATCTCC 60.119 47.826 2.05 0.00 38.29 3.71
7251 7420 1.879380 CTCCGCAACACTTTGGATGAA 59.121 47.619 0.00 0.00 32.81 2.57
7311 7480 1.468054 CCGAGGTAAGGTAAACGACGG 60.468 57.143 0.00 0.00 32.92 4.79
7350 7522 1.153823 CATTTCTGCTGCTGCTGCC 60.154 57.895 25.44 10.66 40.48 4.85
7351 7523 2.348888 ATTTCTGCTGCTGCTGCCC 61.349 57.895 25.44 4.84 40.48 5.36
7352 7524 3.795731 TTTCTGCTGCTGCTGCCCA 62.796 57.895 25.44 11.43 40.48 5.36
7353 7525 4.717313 TCTGCTGCTGCTGCCCAG 62.717 66.667 25.44 20.19 44.67 4.45
7455 7644 5.761726 AGGCAGATGTATGTATGATGTTGTG 59.238 40.000 0.00 0.00 0.00 3.33
7504 7693 4.541973 ACATAACATCTCTGTGCTGTGA 57.458 40.909 0.00 0.00 35.22 3.58
7518 7707 1.512156 CTGTGATGTGCTGTGCTGCA 61.512 55.000 0.00 0.00 41.05 4.41
7575 7777 2.425592 GGTGGGCTTTTGGGTTGC 59.574 61.111 0.00 0.00 0.00 4.17
7578 7780 1.836604 TGGGCTTTTGGGTTGCCTC 60.837 57.895 0.00 0.00 45.45 4.70
7579 7781 2.583441 GGGCTTTTGGGTTGCCTCC 61.583 63.158 0.00 0.00 45.45 4.30
7580 7782 1.533994 GGCTTTTGGGTTGCCTCCT 60.534 57.895 0.00 0.00 43.05 3.69
7581 7783 1.536073 GGCTTTTGGGTTGCCTCCTC 61.536 60.000 0.00 0.00 43.05 3.71
7582 7784 0.540597 GCTTTTGGGTTGCCTCCTCT 60.541 55.000 0.00 0.00 0.00 3.69
7583 7785 1.539157 CTTTTGGGTTGCCTCCTCTC 58.461 55.000 0.00 0.00 0.00 3.20
7607 7809 2.202336 CGCCGCGTGTTCGTACTA 60.202 61.111 4.92 0.00 39.49 1.82
7664 7867 0.313987 GCAAACTGTTGGGTGTAGGC 59.686 55.000 0.00 0.00 35.10 3.93
7732 7935 1.449956 CCTCTTGCTCAGCTGCTCC 60.450 63.158 9.47 0.00 0.00 4.70
7736 7939 1.633852 CTTGCTCAGCTGCTCCGTTC 61.634 60.000 9.47 0.00 0.00 3.95
7738 7941 2.977178 CTCAGCTGCTCCGTTCCT 59.023 61.111 9.47 0.00 0.00 3.36
7746 7950 1.682684 GCTCCGTTCCTCCCTCTGA 60.683 63.158 0.00 0.00 0.00 3.27
7751 7955 2.236395 TCCGTTCCTCCCTCTGAAAATC 59.764 50.000 0.00 0.00 0.00 2.17
7755 7959 2.536066 TCCTCCCTCTGAAAATCGACA 58.464 47.619 0.00 0.00 0.00 4.35
7764 7968 4.786507 TCTGAAAATCGACACATTTGCTG 58.213 39.130 0.00 0.00 0.00 4.41
7769 7973 1.443194 CGACACATTTGCTGCTGGC 60.443 57.895 0.00 0.00 42.22 4.85
7796 8000 1.526464 CCTGCAAAAACGAATTGGTGC 59.474 47.619 0.00 0.00 34.81 5.01
7889 8184 2.167281 AGTCGATCTGGTTGGATGTCTG 59.833 50.000 0.00 0.00 0.00 3.51
7890 8185 2.093973 GTCGATCTGGTTGGATGTCTGT 60.094 50.000 0.00 0.00 0.00 3.41
7891 8186 3.130516 GTCGATCTGGTTGGATGTCTGTA 59.869 47.826 0.00 0.00 0.00 2.74
7892 8187 3.960755 TCGATCTGGTTGGATGTCTGTAT 59.039 43.478 0.00 0.00 0.00 2.29
7894 8189 4.509230 CGATCTGGTTGGATGTCTGTATTG 59.491 45.833 0.00 0.00 0.00 1.90
7895 8190 3.609853 TCTGGTTGGATGTCTGTATTGC 58.390 45.455 0.00 0.00 0.00 3.56
7896 8191 3.264193 TCTGGTTGGATGTCTGTATTGCT 59.736 43.478 0.00 0.00 0.00 3.91
7897 8192 3.346315 TGGTTGGATGTCTGTATTGCTG 58.654 45.455 0.00 0.00 0.00 4.41
7900 8195 4.036027 GGTTGGATGTCTGTATTGCTGATG 59.964 45.833 0.00 0.00 0.00 3.07
7901 8196 3.208594 TGGATGTCTGTATTGCTGATGC 58.791 45.455 0.00 0.00 40.20 3.91
7902 8197 3.118149 TGGATGTCTGTATTGCTGATGCT 60.118 43.478 0.00 0.00 40.48 3.79
7903 8198 4.101430 TGGATGTCTGTATTGCTGATGCTA 59.899 41.667 0.00 0.00 40.48 3.49
7904 8199 4.450419 GGATGTCTGTATTGCTGATGCTAC 59.550 45.833 0.00 0.00 40.48 3.58
7905 8200 4.743057 TGTCTGTATTGCTGATGCTACT 57.257 40.909 0.00 0.00 40.48 2.57
7906 8201 5.852282 TGTCTGTATTGCTGATGCTACTA 57.148 39.130 0.00 0.00 40.48 1.82
7907 8202 5.592054 TGTCTGTATTGCTGATGCTACTAC 58.408 41.667 0.00 0.00 40.48 2.73
7908 8203 5.360999 TGTCTGTATTGCTGATGCTACTACT 59.639 40.000 0.00 0.00 40.48 2.57
7909 8204 6.546034 TGTCTGTATTGCTGATGCTACTACTA 59.454 38.462 0.00 0.00 40.48 1.82
7910 8205 6.858993 GTCTGTATTGCTGATGCTACTACTAC 59.141 42.308 0.00 0.00 40.48 2.73
7911 8206 6.773200 TCTGTATTGCTGATGCTACTACTACT 59.227 38.462 0.00 0.00 40.48 2.57
7912 8207 7.937394 TCTGTATTGCTGATGCTACTACTACTA 59.063 37.037 0.00 0.00 40.48 1.82
7913 8208 8.100508 TGTATTGCTGATGCTACTACTACTAG 57.899 38.462 0.00 0.00 40.48 2.57
7914 8209 7.720074 TGTATTGCTGATGCTACTACTACTAGT 59.280 37.037 0.00 0.00 40.48 2.57
7915 8210 9.217278 GTATTGCTGATGCTACTACTACTAGTA 57.783 37.037 1.89 1.89 40.48 1.82
7979 8288 1.142667 TCTGCCATGGTGTTTGACTCA 59.857 47.619 14.67 0.00 0.00 3.41
7980 8289 2.165167 CTGCCATGGTGTTTGACTCAT 58.835 47.619 14.67 0.00 0.00 2.90
7985 8295 5.069648 TGCCATGGTGTTTGACTCATTTTTA 59.930 36.000 14.67 0.00 0.00 1.52
8014 8324 4.776322 CGGAACCGAGCATGGGCA 62.776 66.667 7.53 0.00 44.61 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 3.657350 GCCAGTAGGGGGTGCCAA 61.657 66.667 0.00 0.00 37.04 4.52
159 169 4.179599 GGGGAGGGAGGGAGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
160 170 4.548513 CGGGGAGGGAGGGAGAGG 62.549 77.778 0.00 0.00 0.00 3.69
236 246 1.982938 GAGAGCTACGGGTGGTGGT 60.983 63.158 0.00 0.00 0.00 4.16
239 269 1.380112 GGAGAGAGCTACGGGTGGT 60.380 63.158 0.00 0.00 0.00 4.16
275 314 2.043349 TGCGGCCTACTCCTGCTA 60.043 61.111 0.00 0.00 0.00 3.49
362 430 1.836604 TGTGGGGGCTCTTTTTGGC 60.837 57.895 0.00 0.00 0.00 4.52
545 623 2.046938 TCCGTGCGGGAGATATTCC 58.953 57.895 10.94 0.00 46.00 3.01
583 661 4.639171 GCTCCCTCGCTCGCTAGC 62.639 72.222 4.06 4.06 45.86 3.42
584 662 3.972276 GGCTCCCTCGCTCGCTAG 61.972 72.222 0.00 0.00 0.00 3.42
585 663 4.507916 AGGCTCCCTCGCTCGCTA 62.508 66.667 0.00 0.00 0.00 4.26
589 667 4.154347 CACCAGGCTCCCTCGCTC 62.154 72.222 0.00 0.00 0.00 5.03
596 674 2.514824 GGAATCGCACCAGGCTCC 60.515 66.667 0.00 0.00 41.67 4.70
701 779 2.167487 CTCTTTACTCCAGTGCTCCTCC 59.833 54.545 0.00 0.00 0.00 4.30
702 780 2.167487 CCTCTTTACTCCAGTGCTCCTC 59.833 54.545 0.00 0.00 0.00 3.71
703 781 2.183679 CCTCTTTACTCCAGTGCTCCT 58.816 52.381 0.00 0.00 0.00 3.69
704 782 1.406205 GCCTCTTTACTCCAGTGCTCC 60.406 57.143 0.00 0.00 0.00 4.70
705 783 1.406205 GGCCTCTTTACTCCAGTGCTC 60.406 57.143 0.00 0.00 0.00 4.26
763 849 4.025145 AGACAGCGGCGCTAAAATAATTAC 60.025 41.667 35.90 14.73 36.40 1.89
811 901 2.751837 GGCGGGCCTCAAAAGAGG 60.752 66.667 0.84 7.16 44.98 3.69
898 988 1.455383 AAAACAAGTGCTCCCAGCGG 61.455 55.000 0.00 0.00 46.26 5.52
899 989 0.040067 GAAAACAAGTGCTCCCAGCG 60.040 55.000 0.00 0.00 46.26 5.18
1047 1148 3.346734 TTGCCCATCCCCACCCTC 61.347 66.667 0.00 0.00 0.00 4.30
1391 1505 6.769822 GGTGACATAGGAATGAATGAGTGAAT 59.230 38.462 0.00 0.00 36.54 2.57
1396 1519 3.496130 GCGGTGACATAGGAATGAATGAG 59.504 47.826 0.00 0.00 36.54 2.90
1399 1522 2.158957 ACGCGGTGACATAGGAATGAAT 60.159 45.455 12.47 0.00 36.54 2.57
1408 1531 1.447140 GGAAGCACGCGGTGACATA 60.447 57.895 12.47 0.00 35.23 2.29
1414 1537 2.746277 GGATTGGAAGCACGCGGT 60.746 61.111 12.47 0.00 0.00 5.68
1476 1599 3.312973 TGCAACAACCGTGTTTTACTAGG 59.687 43.478 0.00 0.00 46.01 3.02
1477 1600 4.539509 TGCAACAACCGTGTTTTACTAG 57.460 40.909 0.00 0.00 46.01 2.57
1478 1601 4.817464 AGATGCAACAACCGTGTTTTACTA 59.183 37.500 0.00 0.00 46.01 1.82
1481 1604 3.880490 AGAGATGCAACAACCGTGTTTTA 59.120 39.130 0.00 0.00 46.01 1.52
1568 1695 4.495184 GGACCGACTAAAACAATAATGCGG 60.495 45.833 0.00 0.00 41.72 5.69
1570 1697 4.093850 ACGGACCGACTAAAACAATAATGC 59.906 41.667 23.38 0.00 0.00 3.56
1624 1752 1.021968 AACACAACCGCTCCAAGAAC 58.978 50.000 0.00 0.00 0.00 3.01
1764 1892 1.270550 CAAATGGAGTGGGTCAAGCAC 59.729 52.381 0.00 0.00 0.00 4.40
1774 1902 5.375417 TGTGAGCATAAACAAATGGAGTG 57.625 39.130 0.00 0.00 0.00 3.51
2057 2185 5.205759 AGGGCATTGTTTGAAAGAAGAAG 57.794 39.130 0.00 0.00 0.00 2.85
2060 2188 6.682423 AAAAAGGGCATTGTTTGAAAGAAG 57.318 33.333 0.00 0.00 0.00 2.85
2086 2214 9.784531 CACCTAATCCATGTGATTCTTATAACT 57.215 33.333 11.29 0.00 42.75 2.24
2087 2215 8.507249 GCACCTAATCCATGTGATTCTTATAAC 58.493 37.037 11.29 0.00 42.75 1.89
2091 2227 6.000246 TGCACCTAATCCATGTGATTCTTA 58.000 37.500 11.29 0.00 42.75 2.10
2094 2230 3.004106 GCTGCACCTAATCCATGTGATTC 59.996 47.826 11.29 1.22 42.75 2.52
2128 2264 6.299141 AGAGCATCCAAGAAAGTAAGAAACA 58.701 36.000 0.00 0.00 33.66 2.83
2129 2265 6.809630 AGAGCATCCAAGAAAGTAAGAAAC 57.190 37.500 0.00 0.00 33.66 2.78
2157 2293 6.431234 GTGAACTGATGGGTTGAGACTTAATT 59.569 38.462 0.00 0.00 0.00 1.40
2161 2297 3.392616 AGTGAACTGATGGGTTGAGACTT 59.607 43.478 0.00 0.00 0.00 3.01
2167 2303 1.901591 AGCAGTGAACTGATGGGTTG 58.098 50.000 14.58 0.00 46.59 3.77
2181 2318 0.474184 AGGTAAAGCACACCAGCAGT 59.526 50.000 4.47 0.00 38.62 4.40
2200 2337 7.148188 TGCAGCAAAATTTTCACCAAAATGTAA 60.148 29.630 0.00 0.00 40.68 2.41
2210 2347 5.473039 AGTATCCTGCAGCAAAATTTTCAC 58.527 37.500 8.66 0.00 0.00 3.18
2216 2353 4.248058 GCAAAAGTATCCTGCAGCAAAAT 58.752 39.130 8.66 1.32 36.09 1.82
2239 2376 2.000447 GATGTCCTTGCCGTGTACTTC 59.000 52.381 0.00 0.00 0.00 3.01
2272 2409 0.409484 AAGCCACCCCATTTAGCAGT 59.591 50.000 0.00 0.00 0.00 4.40
2314 2451 4.033587 TGTCTTTCAAACGTTTCCTTCTCG 59.966 41.667 11.37 0.00 0.00 4.04
2395 2532 1.001393 GGAGAAAATCACCGGGGCA 60.001 57.895 6.32 0.00 0.00 5.36
2531 2668 5.400066 AACTTAAAACTGGCAACACAACT 57.600 34.783 0.00 0.00 46.17 3.16
2798 2936 7.385752 AGAAATGACATGCAAATACAGGTTTTG 59.614 33.333 0.00 0.00 34.14 2.44
2842 2980 5.300969 TCTGCTTTGATGCATTGAAGTAC 57.699 39.130 18.48 8.35 42.48 2.73
2851 2989 3.064408 GTCGAATCATCTGCTTTGATGCA 59.936 43.478 0.00 0.00 42.44 3.96
2956 3094 5.324409 AGGACCTTTGTATTGCTGAATGAA 58.676 37.500 0.00 0.00 0.00 2.57
2975 3113 3.451178 TGGGCTATCACACTAGAAAGGAC 59.549 47.826 0.00 0.00 0.00 3.85
3122 3260 3.631686 CCACAAGTGACTCCACATCAAAA 59.368 43.478 0.94 0.00 45.54 2.44
3245 3383 6.653989 CAAGAGGTCCACTTTATTATCTGGT 58.346 40.000 0.00 0.00 0.00 4.00
3320 3458 3.263261 GGAAGAAGCTACTAACCTGCAC 58.737 50.000 0.00 0.00 0.00 4.57
3417 3556 1.553248 ACTAATAGCAGACCACGGCAA 59.447 47.619 0.00 0.00 39.53 4.52
3648 3787 6.147864 ACTGCAAAGAAGAAAACTTGCATA 57.852 33.333 8.60 0.00 34.15 3.14
3688 3827 7.710907 CCGTTCATAGGAGTTCTAATTTCATGA 59.289 37.037 0.00 0.00 0.00 3.07
3759 3898 0.984230 TGGCCAAGTCCTAAGAGTGG 59.016 55.000 0.61 0.00 33.27 4.00
3766 3905 5.249780 TGTTTTAAGATGGCCAAGTCCTA 57.750 39.130 10.96 0.00 0.00 2.94
3773 3912 6.926630 AAAGGTAATGTTTTAAGATGGCCA 57.073 33.333 8.56 8.56 0.00 5.36
3806 3945 1.134907 CCCAAAAGCATGTCCAGCATC 60.135 52.381 0.00 0.00 35.19 3.91
3851 3990 1.002430 TGAGCGGTCTGAGCAAAATCT 59.998 47.619 16.64 0.00 37.01 2.40
3998 4137 4.978580 GCTCTTAACTTTGAGGCAAACAAG 59.021 41.667 0.00 0.00 0.00 3.16
4097 4240 4.451629 AACAATCACTACAGGTAGTCCG 57.548 45.455 9.07 0.51 43.98 4.79
4131 4274 8.702438 CATTTGTGGAATTGTATTGTCTGTTTC 58.298 33.333 0.00 0.00 0.00 2.78
4246 4389 1.746220 CCGGTGACAAGTTTTGGAACA 59.254 47.619 0.00 0.00 38.26 3.18
4329 4472 8.902540 ATAATGCTATGATACCGAAAGTTGAA 57.097 30.769 0.00 0.00 0.00 2.69
4473 4628 0.673437 AGACCCGCACAAAAACATGG 59.327 50.000 0.00 0.00 0.00 3.66
4495 4650 3.196469 TCCATAGTTGAGTTCTCAGCCAG 59.804 47.826 11.83 4.18 0.00 4.85
4524 4679 1.304134 GTTTCCATTGGGGGCTCGT 60.304 57.895 2.09 0.00 37.22 4.18
4529 4684 1.832998 CATTGAGGTTTCCATTGGGGG 59.167 52.381 2.09 0.00 37.22 5.40
4979 5134 1.135141 CGGACAAGCTCCTCTCTGAAG 60.135 57.143 0.00 0.00 36.80 3.02
5157 5312 1.486310 ACTCACCTTGACTCTGTTGCA 59.514 47.619 0.00 0.00 0.00 4.08
5250 5405 6.222038 TCCTATACAGCTAGAAACCAGTTG 57.778 41.667 0.00 0.00 0.00 3.16
5255 5410 6.592870 ACCATTTCCTATACAGCTAGAAACC 58.407 40.000 0.00 0.00 0.00 3.27
5454 5616 2.336945 TTAGCATCTCAGGGCACATG 57.663 50.000 0.00 0.00 0.00 3.21
5500 5662 4.885325 TGCGTGATTCACTACATCTACCTA 59.115 41.667 14.54 0.00 31.34 3.08
5520 5682 2.015227 AACTTGCCAAACACCCTGCG 62.015 55.000 0.00 0.00 0.00 5.18
5528 5690 5.992729 TCGATTAACTACAACTTGCCAAAC 58.007 37.500 0.00 0.00 0.00 2.93
5587 5749 3.510388 TCCGAGTGCTTTATCTCTGTG 57.490 47.619 0.00 0.00 0.00 3.66
5613 5775 3.998099 TCTGTCACTTGACTCACAGAG 57.002 47.619 10.63 0.00 44.99 3.35
5614 5776 4.736126 TTTCTGTCACTTGACTCACAGA 57.264 40.909 10.63 3.12 44.99 3.41
5615 5777 5.052481 TGATTTCTGTCACTTGACTCACAG 58.948 41.667 10.63 0.83 44.99 3.66
5616 5778 5.022282 TGATTTCTGTCACTTGACTCACA 57.978 39.130 10.63 1.05 44.99 3.58
5617 5779 5.755375 TCTTGATTTCTGTCACTTGACTCAC 59.245 40.000 10.63 0.00 44.99 3.51
5618 5780 5.917462 TCTTGATTTCTGTCACTTGACTCA 58.083 37.500 10.63 3.04 44.99 3.41
5619 5781 6.851222 TTCTTGATTTCTGTCACTTGACTC 57.149 37.500 10.63 0.54 44.99 3.36
5620 5782 6.994496 TCATTCTTGATTTCTGTCACTTGACT 59.006 34.615 10.63 0.00 44.99 3.41
5621 5783 7.194607 TCATTCTTGATTTCTGTCACTTGAC 57.805 36.000 2.19 2.19 44.97 3.18
5622 5784 7.521099 GCTTCATTCTTGATTTCTGTCACTTGA 60.521 37.037 0.00 0.00 0.00 3.02
5623 5785 6.581542 GCTTCATTCTTGATTTCTGTCACTTG 59.418 38.462 0.00 0.00 0.00 3.16
5624 5786 6.263842 TGCTTCATTCTTGATTTCTGTCACTT 59.736 34.615 0.00 0.00 0.00 3.16
5625 5787 5.766670 TGCTTCATTCTTGATTTCTGTCACT 59.233 36.000 0.00 0.00 0.00 3.41
5785 5947 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
5786 5948 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
5787 5949 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
5788 5950 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
5789 5951 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
5790 5952 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
5791 5953 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
5792 5954 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
5793 5955 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
5794 5956 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
5796 5958 9.793259 ACTAAAGTTGAGTCATCTATTTTGGAA 57.207 29.630 4.14 0.00 28.91 3.53
5826 5988 9.694137 GTAGATGACTCAACTTTGTACTAACTT 57.306 33.333 0.00 0.00 0.00 2.66
5827 5989 9.080097 AGTAGATGACTCAACTTTGTACTAACT 57.920 33.333 0.00 0.00 29.95 2.24
5843 6005 2.091555 GGGACAGAGGGAGTAGATGACT 60.092 54.545 0.00 0.00 42.90 3.41
5844 6006 2.312390 GGGACAGAGGGAGTAGATGAC 58.688 57.143 0.00 0.00 0.00 3.06
5845 6007 1.930204 TGGGACAGAGGGAGTAGATGA 59.070 52.381 0.00 0.00 0.00 2.92
5846 6008 2.035632 GTGGGACAGAGGGAGTAGATG 58.964 57.143 0.00 0.00 41.80 2.90
5847 6009 1.646447 TGTGGGACAGAGGGAGTAGAT 59.354 52.381 0.00 0.00 41.80 1.98
5848 6010 1.081481 TGTGGGACAGAGGGAGTAGA 58.919 55.000 0.00 0.00 41.80 2.59
5849 6011 1.938585 TTGTGGGACAGAGGGAGTAG 58.061 55.000 0.00 0.00 41.80 2.57
5850 6012 2.642171 ATTGTGGGACAGAGGGAGTA 57.358 50.000 0.00 0.00 41.80 2.59
5851 6013 2.642171 TATTGTGGGACAGAGGGAGT 57.358 50.000 0.00 0.00 41.80 3.85
5852 6014 4.901849 TCTTATATTGTGGGACAGAGGGAG 59.098 45.833 0.00 0.00 41.80 4.30
5853 6015 4.890988 TCTTATATTGTGGGACAGAGGGA 58.109 43.478 0.00 0.00 41.80 4.20
5854 6016 5.368989 GTTCTTATATTGTGGGACAGAGGG 58.631 45.833 0.00 0.00 41.80 4.30
5855 6017 5.050490 CGTTCTTATATTGTGGGACAGAGG 58.950 45.833 0.00 0.00 41.80 3.69
5856 6018 5.661458 ACGTTCTTATATTGTGGGACAGAG 58.339 41.667 0.00 0.00 41.80 3.35
5857 6019 5.670792 ACGTTCTTATATTGTGGGACAGA 57.329 39.130 0.00 0.00 41.80 3.41
5858 6020 6.737254 AAACGTTCTTATATTGTGGGACAG 57.263 37.500 0.00 0.00 41.80 3.51
5859 6021 7.228906 TCAAAAACGTTCTTATATTGTGGGACA 59.771 33.333 0.00 0.00 0.00 4.02
5860 6022 7.536281 GTCAAAAACGTTCTTATATTGTGGGAC 59.464 37.037 0.00 0.00 0.00 4.46
5861 6023 7.228906 TGTCAAAAACGTTCTTATATTGTGGGA 59.771 33.333 0.00 0.00 0.00 4.37
5862 6024 7.325097 GTGTCAAAAACGTTCTTATATTGTGGG 59.675 37.037 0.00 0.00 0.00 4.61
5863 6025 8.073768 AGTGTCAAAAACGTTCTTATATTGTGG 58.926 33.333 0.00 0.00 0.00 4.17
5871 6033 9.316730 ACTAATGTAGTGTCAAAAACGTTCTTA 57.683 29.630 0.00 0.00 37.69 2.10
5872 6034 8.205131 ACTAATGTAGTGTCAAAAACGTTCTT 57.795 30.769 0.00 0.00 37.69 2.52
5873 6035 7.781548 ACTAATGTAGTGTCAAAAACGTTCT 57.218 32.000 0.00 0.00 37.69 3.01
5903 6065 9.712305 CCTCCGTCTCATAATATAAGAACATTT 57.288 33.333 0.00 0.00 0.00 2.32
5904 6066 8.314751 CCCTCCGTCTCATAATATAAGAACATT 58.685 37.037 0.00 0.00 0.00 2.71
5905 6067 7.674348 TCCCTCCGTCTCATAATATAAGAACAT 59.326 37.037 0.00 0.00 0.00 2.71
5906 6068 7.008332 TCCCTCCGTCTCATAATATAAGAACA 58.992 38.462 0.00 0.00 0.00 3.18
5907 6069 7.177041 ACTCCCTCCGTCTCATAATATAAGAAC 59.823 40.741 0.00 0.00 0.00 3.01
5908 6070 7.239438 ACTCCCTCCGTCTCATAATATAAGAA 58.761 38.462 0.00 0.00 0.00 2.52
5909 6071 6.791371 ACTCCCTCCGTCTCATAATATAAGA 58.209 40.000 0.00 0.00 0.00 2.10
5910 6072 8.754991 ATACTCCCTCCGTCTCATAATATAAG 57.245 38.462 0.00 0.00 0.00 1.73
5911 6073 9.543231 AAATACTCCCTCCGTCTCATAATATAA 57.457 33.333 0.00 0.00 0.00 0.98
5912 6074 9.543231 AAAATACTCCCTCCGTCTCATAATATA 57.457 33.333 0.00 0.00 0.00 0.86
5913 6075 8.314751 CAAAATACTCCCTCCGTCTCATAATAT 58.685 37.037 0.00 0.00 0.00 1.28
5914 6076 7.256190 CCAAAATACTCCCTCCGTCTCATAATA 60.256 40.741 0.00 0.00 0.00 0.98
5915 6077 6.464465 CCAAAATACTCCCTCCGTCTCATAAT 60.464 42.308 0.00 0.00 0.00 1.28
5916 6078 5.163343 CCAAAATACTCCCTCCGTCTCATAA 60.163 44.000 0.00 0.00 0.00 1.90
5917 6079 4.344102 CCAAAATACTCCCTCCGTCTCATA 59.656 45.833 0.00 0.00 0.00 2.15
5918 6080 3.134804 CCAAAATACTCCCTCCGTCTCAT 59.865 47.826 0.00 0.00 0.00 2.90
5919 6081 2.500098 CCAAAATACTCCCTCCGTCTCA 59.500 50.000 0.00 0.00 0.00 3.27
5920 6082 2.764572 TCCAAAATACTCCCTCCGTCTC 59.235 50.000 0.00 0.00 0.00 3.36
5921 6083 2.829023 TCCAAAATACTCCCTCCGTCT 58.171 47.619 0.00 0.00 0.00 4.18
5922 6084 3.268330 GTTCCAAAATACTCCCTCCGTC 58.732 50.000 0.00 0.00 0.00 4.79
5923 6085 2.354403 CGTTCCAAAATACTCCCTCCGT 60.354 50.000 0.00 0.00 0.00 4.69
5924 6086 2.277084 CGTTCCAAAATACTCCCTCCG 58.723 52.381 0.00 0.00 0.00 4.63
5925 6087 2.237893 TCCGTTCCAAAATACTCCCTCC 59.762 50.000 0.00 0.00 0.00 4.30
5926 6088 3.532542 CTCCGTTCCAAAATACTCCCTC 58.467 50.000 0.00 0.00 0.00 4.30
5927 6089 2.238898 CCTCCGTTCCAAAATACTCCCT 59.761 50.000 0.00 0.00 0.00 4.20
5928 6090 2.640184 CCTCCGTTCCAAAATACTCCC 58.360 52.381 0.00 0.00 0.00 4.30
5929 6091 2.237893 TCCCTCCGTTCCAAAATACTCC 59.762 50.000 0.00 0.00 0.00 3.85
5930 6092 3.055312 ACTCCCTCCGTTCCAAAATACTC 60.055 47.826 0.00 0.00 0.00 2.59
5931 6093 2.910977 ACTCCCTCCGTTCCAAAATACT 59.089 45.455 0.00 0.00 0.00 2.12
5932 6094 3.345508 ACTCCCTCCGTTCCAAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
5933 6095 3.118519 GCTACTCCCTCCGTTCCAAAATA 60.119 47.826 0.00 0.00 0.00 1.40
5934 6096 2.355818 GCTACTCCCTCCGTTCCAAAAT 60.356 50.000 0.00 0.00 0.00 1.82
5935 6097 1.002773 GCTACTCCCTCCGTTCCAAAA 59.997 52.381 0.00 0.00 0.00 2.44
5936 6098 0.611714 GCTACTCCCTCCGTTCCAAA 59.388 55.000 0.00 0.00 0.00 3.28
5937 6099 0.252103 AGCTACTCCCTCCGTTCCAA 60.252 55.000 0.00 0.00 0.00 3.53
5938 6100 0.627451 TAGCTACTCCCTCCGTTCCA 59.373 55.000 0.00 0.00 0.00 3.53
5939 6101 1.614413 CATAGCTACTCCCTCCGTTCC 59.386 57.143 0.00 0.00 0.00 3.62
5940 6102 2.034812 CACATAGCTACTCCCTCCGTTC 59.965 54.545 0.00 0.00 0.00 3.95
5941 6103 2.032620 CACATAGCTACTCCCTCCGTT 58.967 52.381 0.00 0.00 0.00 4.44
5942 6104 1.693627 CACATAGCTACTCCCTCCGT 58.306 55.000 0.00 0.00 0.00 4.69
5943 6105 0.962489 CCACATAGCTACTCCCTCCG 59.038 60.000 0.00 0.00 0.00 4.63
5944 6106 1.343069 CCCACATAGCTACTCCCTCC 58.657 60.000 0.00 0.00 0.00 4.30
5945 6107 1.689273 CACCCACATAGCTACTCCCTC 59.311 57.143 0.00 0.00 0.00 4.30
5946 6108 1.692762 CCACCCACATAGCTACTCCCT 60.693 57.143 0.00 0.00 0.00 4.20
5947 6109 0.759346 CCACCCACATAGCTACTCCC 59.241 60.000 0.00 0.00 0.00 4.30
5948 6110 1.413077 GTCCACCCACATAGCTACTCC 59.587 57.143 0.00 0.00 0.00 3.85
5949 6111 1.067212 CGTCCACCCACATAGCTACTC 59.933 57.143 0.00 0.00 0.00 2.59
5950 6112 1.112113 CGTCCACCCACATAGCTACT 58.888 55.000 0.00 0.00 0.00 2.57
5951 6113 0.822164 ACGTCCACCCACATAGCTAC 59.178 55.000 0.00 0.00 0.00 3.58
6250 6415 2.029003 CGTAGACGACTCGGTAACTGAG 59.971 54.545 2.98 0.00 43.02 3.35
6258 6423 1.012889 GCGTACGTAGACGACTCGG 60.013 63.158 17.90 0.00 45.82 4.63
6262 6427 1.012889 CCGAGCGTACGTAGACGAC 60.013 63.158 17.90 6.19 45.82 4.34
6271 6436 0.104304 ACCATTCATCCCGAGCGTAC 59.896 55.000 0.00 0.00 0.00 3.67
6279 6444 2.189499 GCGCCTGACCATTCATCCC 61.189 63.158 0.00 0.00 0.00 3.85
6353 6518 2.603110 CACAGTATTGAACGTGGATCCG 59.397 50.000 7.39 0.00 32.50 4.18
6482 6647 0.840288 TCTTCCCAACCAGCAGGCTA 60.840 55.000 0.00 0.00 39.06 3.93
6489 6654 6.607198 ACAACCAATATATTCTTCCCAACCAG 59.393 38.462 0.00 0.00 0.00 4.00
6781 6946 9.700831 AAAGCCTGGAGAACATAATTATAACTT 57.299 29.630 0.00 0.00 0.00 2.66
6800 6967 7.148755 GCAACAAAACTTGATACATAAAGCCTG 60.149 37.037 0.00 0.00 0.00 4.85
6835 7002 5.273674 TCAGCAGTCAATAAGGATGAGAG 57.726 43.478 0.00 0.00 0.00 3.20
6891 7058 8.515695 TCTCCATTTCTCGTATTTGTCTAGTA 57.484 34.615 0.00 0.00 0.00 1.82
6942 7109 0.969894 CTTCCCCTGAACTCGACTGT 59.030 55.000 0.00 0.00 0.00 3.55
7008 7175 1.080093 GGTCGCCTGAATGACGTCA 60.080 57.895 22.48 22.48 35.95 4.35
7038 7205 2.290896 GCCATCCATCCCCGATTTCATA 60.291 50.000 0.00 0.00 0.00 2.15
7062 7229 1.146957 CGTCGAACGGTTTGGACACA 61.147 55.000 19.30 0.00 39.72 3.72
7101 7268 1.486726 CCCACCACTAATCTGGAGACC 59.513 57.143 0.00 0.00 35.04 3.85
7126 7293 2.045524 AGATCATGAGGCCGAATCAGT 58.954 47.619 0.09 0.00 0.00 3.41
7152 7319 2.278661 GTCGGATCCGGCTTCGAC 60.279 66.667 31.02 22.28 43.62 4.20
7234 7403 3.730715 GTCTTTTCATCCAAAGTGTTGCG 59.269 43.478 0.00 0.00 35.56 4.85
7324 7496 1.226859 CAGCAGAAATGCATGCCCG 60.227 57.895 16.68 0.00 43.60 6.13
7360 7549 3.371380 GCCACCTCCTTCATCTTCATCTT 60.371 47.826 0.00 0.00 0.00 2.40
7428 7617 6.042638 ACATCATACATACATCTGCCTACC 57.957 41.667 0.00 0.00 0.00 3.18
7455 7644 5.300752 TCAAAGAATGAACAGACAGGAGAC 58.699 41.667 0.00 0.00 34.30 3.36
7484 7673 4.874396 ACATCACAGCACAGAGATGTTATG 59.126 41.667 8.37 8.37 46.49 1.90
7518 7707 4.742649 TCCGGAGCTCAGGCGAGT 62.743 66.667 26.32 0.00 44.37 4.18
7522 7711 3.844090 GGACTCCGGAGCTCAGGC 61.844 72.222 31.56 12.32 39.06 4.85
7533 7734 2.457366 TTTTCTTCTCAGCGGACTCC 57.543 50.000 0.00 0.00 0.00 3.85
7575 7777 2.520741 GCGGAGAGGGAGAGGAGG 60.521 72.222 0.00 0.00 0.00 4.30
7626 7829 2.884012 TGCATCAAAAGTTCCACGATGT 59.116 40.909 0.00 0.00 36.64 3.06
7664 7867 0.738389 AAAGACACACGCCCAGTTTG 59.262 50.000 0.00 0.00 36.63 2.93
7732 7935 2.094182 TCGATTTTCAGAGGGAGGAACG 60.094 50.000 0.00 0.00 0.00 3.95
7736 7939 2.028112 TGTGTCGATTTTCAGAGGGAGG 60.028 50.000 0.00 0.00 0.00 4.30
7738 7941 3.981071 ATGTGTCGATTTTCAGAGGGA 57.019 42.857 0.00 0.00 0.00 4.20
7746 7950 3.311106 CAGCAGCAAATGTGTCGATTTT 58.689 40.909 0.00 0.00 0.00 1.82
7751 7955 1.443194 GCCAGCAGCAAATGTGTCG 60.443 57.895 0.00 0.00 42.97 4.35
7783 7987 1.876799 TCGACATGCACCAATTCGTTT 59.123 42.857 0.00 0.00 0.00 3.60
7796 8000 1.202222 GCTGCCCAGAAAATCGACATG 60.202 52.381 0.00 0.00 0.00 3.21
7878 8173 4.497006 GCATCAGCAATACAGACATCCAAC 60.497 45.833 0.00 0.00 41.58 3.77
7889 8184 8.101654 ACTAGTAGTAGTAGCATCAGCAATAC 57.898 38.462 8.55 0.00 37.76 1.89
7909 8204 9.973450 CTGCATTTCATATCAAGTACTACTAGT 57.027 33.333 0.00 0.00 0.00 2.57
7910 8205 9.416794 CCTGCATTTCATATCAAGTACTACTAG 57.583 37.037 0.00 0.00 0.00 2.57
7911 8206 8.367911 CCCTGCATTTCATATCAAGTACTACTA 58.632 37.037 0.00 0.00 0.00 1.82
7912 8207 7.220030 CCCTGCATTTCATATCAAGTACTACT 58.780 38.462 0.00 0.00 0.00 2.57
7913 8208 6.073003 GCCCTGCATTTCATATCAAGTACTAC 60.073 42.308 0.00 0.00 0.00 2.73
7914 8209 5.997746 GCCCTGCATTTCATATCAAGTACTA 59.002 40.000 0.00 0.00 0.00 1.82
7915 8210 4.823989 GCCCTGCATTTCATATCAAGTACT 59.176 41.667 0.00 0.00 0.00 2.73
7916 8211 4.580167 TGCCCTGCATTTCATATCAAGTAC 59.420 41.667 0.00 0.00 31.71 2.73
7917 8212 4.790937 TGCCCTGCATTTCATATCAAGTA 58.209 39.130 0.00 0.00 31.71 2.24
7918 8213 3.634504 TGCCCTGCATTTCATATCAAGT 58.365 40.909 0.00 0.00 31.71 3.16
7919 8214 3.552273 GCTGCCCTGCATTTCATATCAAG 60.552 47.826 0.00 0.00 38.13 3.02
7920 8215 2.363038 GCTGCCCTGCATTTCATATCAA 59.637 45.455 0.00 0.00 38.13 2.57
7921 8216 1.958579 GCTGCCCTGCATTTCATATCA 59.041 47.619 0.00 0.00 38.13 2.15
7979 8288 0.995728 CGCCGCGGCAAAATAAAAAT 59.004 45.000 45.26 0.00 42.06 1.82
7980 8289 1.009389 CCGCCGCGGCAAAATAAAAA 61.009 50.000 45.26 0.00 41.17 1.94
8014 8324 1.641123 CGGACCAATTAAACGCGCCT 61.641 55.000 5.73 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.